Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1294:910478b2d4e4
refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 06 Feb 2015 13:48:05 +0100 |
parents | 6e7e5ed91c2d |
children | 501432928727 |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
0 | 43 #include "../Core/Toolbox.h" |
44 #include "../Core/Uuid.h" | |
45 #include "../Core/DicomFormat/DicomArray.h" | |
46 #include "FromDcmtkBridge.h" | |
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47 #include "ServerContext.h" |
0 | 48 |
49 #include <boost/lexical_cast.hpp> | |
50 #include <stdio.h> | |
108 | 51 #include <glog/logging.h> |
0 | 52 |
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53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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54 |
62 | 55 namespace Orthanc |
0 | 56 { |
57 namespace Internals | |
58 { | |
202 | 59 class ServerIndexListener : public IServerIndexListener |
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60 { |
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61 private: |
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62 struct FileToRemove |
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63 { |
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64 private: |
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65 std::string uuid_; |
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66 FileContentType type_; |
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67 |
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68 public: |
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69 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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70 type_(info.GetContentType()) |
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71 { |
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72 } |
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73 |
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74 const std::string& GetUuid() const |
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75 { |
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76 return uuid_; |
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77 } |
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78 |
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79 FileContentType GetContentType() const |
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80 { |
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81 return type_; |
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82 } |
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83 }; |
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84 |
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85 ServerContext& context_; |
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86 bool hasRemainingLevel_; |
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87 ResourceType remainingType_; |
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88 std::string remainingPublicId_; |
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89 std::list<FileToRemove> pendingFilesToRemove_; |
1196 | 90 std::list<ServerIndexChange> pendingChanges_; |
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91 uint64_t sizeOfFilesToRemove_; |
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92 bool insideTransaction_; |
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93 |
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94 void Reset() |
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95 { |
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96 sizeOfFilesToRemove_ = 0; |
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97 hasRemainingLevel_ = false; |
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98 pendingFilesToRemove_.clear(); |
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99 pendingChanges_.clear(); |
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100 } |
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101 |
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102 public: |
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103 ServerIndexListener(ServerContext& context) : context_(context), |
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104 insideTransaction_(false) |
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105 { |
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106 Reset(); |
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107 assert(ResourceType_Patient < ResourceType_Study && |
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108 ResourceType_Study < ResourceType_Series && |
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109 ResourceType_Series < ResourceType_Instance); |
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110 } |
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111 |
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112 void StartTransaction() |
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113 { |
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114 Reset(); |
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115 insideTransaction_ = true; |
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116 } |
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117 |
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118 void EndTransaction() |
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119 { |
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120 insideTransaction_ = false; |
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121 } |
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122 |
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123 uint64_t GetSizeOfFilesToRemove() |
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124 { |
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125 return sizeOfFilesToRemove_; |
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126 } |
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127 |
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128 void CommitFilesToRemove() |
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129 { |
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130 for (std::list<FileToRemove>::const_iterator |
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131 it = pendingFilesToRemove_.begin(); |
656 | 132 it != pendingFilesToRemove_.end(); ++it) |
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133 { |
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134 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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135 } |
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136 } |
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137 |
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138 void CommitChanges() |
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139 { |
1196 | 140 for (std::list<ServerIndexChange>::const_iterator |
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141 it = pendingChanges_.begin(); |
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142 it != pendingChanges_.end(); it++) |
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143 { |
1198 | 144 context_.SignalChange(*it); |
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145 } |
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146 } |
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147 |
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148 virtual void SignalRemainingAncestor(ResourceType parentType, |
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149 const std::string& publicId) |
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150 { |
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151 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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152 |
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153 if (hasRemainingLevel_) |
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154 { |
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155 if (parentType < remainingType_) |
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156 { |
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157 remainingType_ = parentType; |
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158 remainingPublicId_ = publicId; |
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159 } |
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160 } |
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161 else |
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162 { |
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163 hasRemainingLevel_ = true; |
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164 remainingType_ = parentType; |
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165 remainingPublicId_ = publicId; |
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166 } |
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167 } |
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168 |
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169 virtual void SignalFileDeleted(const FileInfo& info) |
201
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170 { |
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171 assert(Toolbox::IsUuid(info.GetUuid())); |
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172 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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173 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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174 } |
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175 |
1198 | 176 virtual void SignalChange(const ServerIndexChange& change) |
1158 | 177 { |
1198 | 178 LOG(INFO) << "Change related to resource " << change.GetPublicId() << " of type " |
179 << EnumerationToString(change.GetResourceType()) << ": " | |
180 << EnumerationToString(change.GetChangeType()); | |
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181 |
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182 if (insideTransaction_) |
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183 { |
1198 | 184 pendingChanges_.push_back(change); |
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185 } |
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186 else |
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187 { |
1198 | 188 context_.SignalChange(change); |
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189 } |
1158 | 190 } |
191 | |
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192 bool HasRemainingLevel() const |
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193 { |
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194 return hasRemainingLevel_; |
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195 } |
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196 |
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197 ResourceType GetRemainingType() const |
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198 { |
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199 assert(HasRemainingLevel()); |
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200 return remainingType_; |
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201 } |
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202 |
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203 const std::string& GetRemainingPublicId() const |
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204 { |
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205 assert(HasRemainingLevel()); |
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206 return remainingPublicId_; |
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207 } |
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208 }; |
0 | 209 } |
210 | |
211 | |
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212 class ServerIndex::Transaction |
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213 { |
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214 private: |
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215 ServerIndex& index_; |
1235 | 216 std::auto_ptr<SQLite::ITransaction> transaction_; |
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217 bool isCommitted_; |
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218 |
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219 public: |
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220 Transaction(ServerIndex& index) : |
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221 index_(index), |
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222 isCommitted_(false) |
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223 { |
1247 | 224 transaction_.reset(index_.db_.StartTransaction()); |
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225 transaction_->Begin(); |
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226 |
1270 | 227 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
228 | |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 } |
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236 |
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237 void Commit(uint64_t sizeOfAddedFiles) |
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238 { |
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239 if (!isCommitted_) |
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240 { |
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241 transaction_->Commit(); |
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242 |
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243 // We can remove the files once the SQLite transaction has |
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244 // been successfully committed. Some files might have to be |
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245 // deleted because of recycling. |
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246 index_.listener_->CommitFilesToRemove(); |
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247 |
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248 index_.currentStorageSize_ += sizeOfAddedFiles; |
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249 |
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250 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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251 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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252 |
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253 // Send all the pending changes to the Orthanc plugins |
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254 index_.listener_->CommitChanges(); |
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255 |
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256 isCommitted_ = true; |
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257 } |
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258 } |
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259 }; |
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260 |
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261 |
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262 class ServerIndex::UnstableResourcePayload |
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263 { |
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264 private: |
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265 ResourceType type_; |
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266 std::string publicId_; |
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267 boost::posix_time::ptime time_; |
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268 |
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269 public: |
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270 UnstableResourcePayload() : type_(ResourceType_Instance) |
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271 { |
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272 } |
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273 |
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274 UnstableResourcePayload(Orthanc::ResourceType type, |
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275 const std::string& publicId) : |
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276 type_(type), |
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277 publicId_(publicId) |
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278 { |
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279 time_ = boost::posix_time::second_clock::local_time(); |
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280 } |
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281 |
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282 unsigned int GetAge() const |
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283 { |
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284 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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285 } |
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286 |
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287 ResourceType GetResourceType() const |
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288 { |
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289 return type_; |
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290 } |
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291 |
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292 const std::string& GetPublicId() const |
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293 { |
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294 return publicId_; |
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295 } |
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296 }; |
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297 |
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298 |
212 | 299 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 300 const std::string& uuid, |
202 | 301 ResourceType expectedType) |
0 | 302 { |
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303 boost::mutex::scoped_lock lock(mutex_); |
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304 |
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305 Transaction t(*this); |
201
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306 |
202 | 307 int64_t id; |
308 ResourceType type; | |
1294 | 309 if (!db_.LookupResource(id, type, uuid) || |
202 | 310 expectedType != type) |
0 | 311 { |
312 return false; | |
313 } | |
202 | 314 |
1247 | 315 db_.DeleteResource(id); |
0 | 316 |
202 | 317 if (listener_->HasRemainingLevel()) |
0 | 318 { |
202 | 319 ResourceType type = listener_->GetRemainingType(); |
320 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 321 |
322 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 323 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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324 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 325 target["RemainingAncestor"]["ID"] = uuid; |
326 } | |
327 else | |
328 { | |
329 target["RemainingAncestor"] = Json::nullValue; | |
330 } | |
331 | |
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332 t.Commit(0); |
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333 |
0 | 334 return true; |
335 } | |
336 | |
337 | |
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338 void ServerIndex::FlushThread(ServerIndex* that) |
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339 { |
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340 // By default, wait for 10 seconds before flushing |
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341 unsigned int sleep = 10; |
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342 |
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343 try |
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344 { |
744 | 345 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 346 std::string sleepString; |
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347 |
1247 | 348 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 349 Toolbox::IsInteger(sleepString)) |
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350 { |
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351 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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352 } |
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353 } |
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354 catch (boost::bad_lexical_cast&) |
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355 { |
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356 } |
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357 |
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358 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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359 |
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360 unsigned int count = 0; |
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361 |
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362 while (!that->done_) |
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363 { |
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364 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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365 count++; |
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366 if (count < sleep) |
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367 { |
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368 continue; |
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369 } |
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370 |
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371 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 372 that->db_.FlushToDisk(); |
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373 count = 0; |
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374 } |
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375 |
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376 LOG(INFO) << "Stopping the database flushing thread"; |
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377 } |
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378 |
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379 |
1247 | 380 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 381 int64_t series, |
382 const DicomMap& dicomSummary) | |
383 { | |
384 try | |
385 { | |
656 | 386 const DicomValue* value; |
387 const DicomValue* value2; | |
388 | |
433 | 389 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
390 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
391 { | |
392 // Patch for series with temporal positions thanks to Will Ryder | |
393 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
394 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
395 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
396 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
397 } | |
398 | |
399 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
401 { | |
402 // Support of Cardio-PET images | |
403 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
404 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
405 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
410 { | |
411 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
412 } | |
413 } | |
414 catch (boost::bad_lexical_cast) | |
415 { | |
416 } | |
417 } | |
418 | |
419 | |
1237 | 420 |
421 | |
1238 | 422 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 423 int64_t id, |
424 MetadataType type) | |
425 { | |
1238 | 426 std::string s; |
1247 | 427 if (!db_.LookupMetadata(s, id, type)) |
1237 | 428 { |
429 return false; | |
430 } | |
431 | |
432 try | |
433 { | |
1238 | 434 result = boost::lexical_cast<int64_t>(s); |
1237 | 435 return true; |
436 } | |
437 catch (boost::bad_lexical_cast&) | |
438 { | |
439 return false; | |
440 } | |
441 } | |
442 | |
443 | |
444 | |
445 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
446 { | |
447 std::string oldValue; | |
448 | |
1247 | 449 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 450 { |
451 uint64_t oldNumber; | |
452 | |
453 try | |
454 { | |
455 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 456 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 457 return oldNumber + 1; |
458 } | |
459 catch (boost::bad_lexical_cast&) | |
460 { | |
461 throw OrthancException(ErrorCode_InternalError); | |
462 } | |
463 } | |
464 else | |
465 { | |
466 // Initialize the sequence at "1" | |
1247 | 467 db_.SetGlobalProperty(property, "1"); |
1237 | 468 return 1; |
469 } | |
470 } | |
471 | |
472 | |
473 | |
1286 | 474 void ServerIndex::SetMainDicomTags(int64_t resource, |
475 const DicomMap& tags) | |
476 { | |
477 DicomArray flattened(tags); | |
478 for (size_t i = 0; i < flattened.GetSize(); i++) | |
479 { | |
480 const DicomElement& element = flattened.GetElement(i); | |
481 db_.SetMainDicomTag(resource, element.GetTag(), element.GetValue().AsString()); | |
482 } | |
483 } | |
484 | |
485 | |
486 | |
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487 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 488 IDatabaseWrapper& db) : |
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489 done_(false), |
1247 | 490 db_(db), |
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491 maximumStorageSize_(0), |
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492 maximumPatients_(0) |
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493 { |
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494 listener_.reset(new Internals::ServerIndexListener(context)); |
1247 | 495 db_.SetListener(*listener_); |
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496 |
1247 | 497 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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498 |
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499 // Initial recycling if the parameters have changed since the last |
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500 // execution of Orthanc |
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501 StandaloneRecycling(); |
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502 |
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503 flushThread_ = boost::thread(FlushThread, this); |
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504 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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505 } |
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506 |
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507 |
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508 ServerIndex::~ServerIndex() |
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509 { |
511
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510 done_ = true; |
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511 |
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512 if (flushThread_.joinable()) |
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513 { |
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514 flushThread_.join(); |
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515 } |
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516 |
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517 if (unstableResourcesMonitorThread_.joinable()) |
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518 { |
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519 unstableResourcesMonitorThread_.join(); |
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520 } |
0 | 521 } |
522 | |
523 | |
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524 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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525 const DicomMap& dicomSummary, |
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526 const Attachments& attachments, |
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527 const std::string& remoteAet, |
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528 const MetadataMap& metadata) |
0 | 529 { |
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530 boost::mutex::scoped_lock lock(mutex_); |
0 | 531 |
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532 instanceMetadata.clear(); |
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533 |
178 | 534 DicomInstanceHasher hasher(dicomSummary); |
0 | 535 |
536 try | |
537 { | |
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538 Transaction t(*this); |
0 | 539 |
202 | 540 // Do nothing if the instance already exists |
0 | 541 { |
432 | 542 ResourceType type; |
543 int64_t tmp; | |
1294 | 544 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 545 { |
546 assert(type == ResourceType_Instance); | |
1247 | 547 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 548 return StoreStatus_AlreadyStored; |
549 } | |
0 | 550 } |
551 | |
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552 // Ensure there is enough room in the storage for the new instance |
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553 uint64_t instanceSize = 0; |
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554 for (Attachments::const_iterator it = attachments.begin(); |
656 | 555 it != attachments.end(); ++it) |
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556 { |
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557 instanceSize += it->GetCompressedSize(); |
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558 } |
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559 |
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560 Recycle(instanceSize, hasher.HashPatient()); |
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561 |
202 | 562 // Create the instance |
1247 | 563 int64_t instance = db_.CreateResource(hasher.HashInstance(), ResourceType_Instance); |
202 | 564 |
565 DicomMap dicom; | |
566 dicomSummary.ExtractInstanceInformation(dicom); | |
1286 | 567 SetMainDicomTags(instance, dicom); |
202 | 568 |
432 | 569 // Detect up to which level the patient/study/series/instance |
570 // hierarchy must be created | |
571 int64_t patient = -1, study = -1, series = -1; | |
572 bool isNewPatient = false; | |
573 bool isNewStudy = false; | |
574 bool isNewSeries = false; | |
575 | |
0 | 576 { |
432 | 577 ResourceType dummy; |
578 | |
1294 | 579 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 580 { |
581 assert(dummy == ResourceType_Series); | |
582 // The patient, the study and the series already exist | |
583 | |
1294 | 584 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
585 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 586 assert(ok); |
587 } | |
1294 | 588 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 589 { |
590 assert(dummy == ResourceType_Study); | |
591 | |
592 // New series: The patient and the study already exist | |
593 isNewSeries = true; | |
594 | |
1294 | 595 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 596 assert(ok); |
597 } | |
1294 | 598 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 599 { |
600 assert(dummy == ResourceType_Patient); | |
601 | |
602 // New study and series: The patient already exist | |
603 isNewStudy = true; | |
604 isNewSeries = true; | |
605 } | |
606 else | |
607 { | |
608 // New patient, study and series: Nothing exists | |
609 isNewPatient = true; | |
610 isNewStudy = true; | |
611 isNewSeries = true; | |
612 } | |
613 } | |
614 | |
615 // Create the series if needed | |
616 if (isNewSeries) | |
617 { | |
1247 | 618 series = db_.CreateResource(hasher.HashSeries(), ResourceType_Series); |
202 | 619 dicomSummary.ExtractSeriesInformation(dicom); |
1286 | 620 SetMainDicomTags(series, dicom); |
432 | 621 } |
202 | 622 |
432 | 623 // Create the study if needed |
624 if (isNewStudy) | |
625 { | |
1247 | 626 study = db_.CreateResource(hasher.HashStudy(), ResourceType_Study); |
432 | 627 dicomSummary.ExtractStudyInformation(dicom); |
1286 | 628 SetMainDicomTags(study, dicom); |
432 | 629 } |
630 | |
631 // Create the patient if needed | |
632 if (isNewPatient) | |
633 { | |
1247 | 634 patient = db_.CreateResource(hasher.HashPatient(), ResourceType_Patient); |
432 | 635 dicomSummary.ExtractPatientInformation(dicom); |
1286 | 636 SetMainDicomTags(patient, dicom); |
432 | 637 } |
202 | 638 |
432 | 639 // Create the parent-to-child links |
1247 | 640 db_.AttachChild(series, instance); |
432 | 641 |
642 if (isNewSeries) | |
643 { | |
1247 | 644 db_.AttachChild(study, series); |
0 | 645 } |
432 | 646 |
647 if (isNewStudy) | |
0 | 648 { |
1247 | 649 db_.AttachChild(patient, study); |
0 | 650 } |
651 | |
432 | 652 // Sanity checks |
653 assert(patient != -1); | |
654 assert(study != -1); | |
655 assert(series != -1); | |
656 assert(instance != -1); | |
657 | |
202 | 658 // Attach the files to the newly created instance |
232
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659 for (Attachments::const_iterator it = attachments.begin(); |
656 | 660 it != attachments.end(); ++it) |
232
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661 { |
1247 | 662 db_.AddAttachment(instance, *it); |
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663 } |
202 | 664 |
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665 // Attach the user-specified metadata |
1006
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666 for (MetadataMap::const_iterator |
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667 it = metadata.begin(); it != metadata.end(); ++it) |
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668 { |
1006
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669 switch (it->first.first) |
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670 { |
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671 case ResourceType_Patient: |
1247 | 672 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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673 break; |
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674 |
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675 case ResourceType_Study: |
1247 | 676 db_.SetMetadata(study, it->first.second, it->second); |
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677 break; |
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678 |
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679 case ResourceType_Series: |
1247 | 680 db_.SetMetadata(series, it->first.second, it->second); |
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681 break; |
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682 |
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683 case ResourceType_Instance: |
1247 | 684 db_.SetMetadata(instance, it->first.second, it->second); |
1006
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685 instanceMetadata[it->first.second] = it->second; |
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686 break; |
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687 |
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688 default: |
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689 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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690 } |
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691 } |
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692 |
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693 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 694 std::string now = Toolbox::GetNowIsoString(); |
1247 | 695 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
696 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
697 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
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698 |
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699 // Attach the auto-computed metadata for the instance level, |
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700 // reflecting these additions into the input metadata map |
1247 | 701 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
1006
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702 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
202 | 703 |
1247 | 704 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
1006
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705 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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706 |
202 | 707 const DicomValue* value; |
708 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
709 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 710 { |
1247 | 711 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
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712 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
0 | 713 } |
714 | |
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715 // Check whether the series of this new instance is now completed |
202 | 716 if (isNewSeries) |
717 { | |
1247 | 718 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 719 } |
720 | |
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721 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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722 if (seriesStatus == SeriesStatus_Complete) |
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723 { |
1237 | 724 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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725 } |
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726 |
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727 // Mark the parent resources of this instance as unstable |
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728 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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729 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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730 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
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731 |
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732 t.Commit(instanceSize); |
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733 |
0 | 734 return StoreStatus_Success; |
735 } | |
62 | 736 catch (OrthancException& e) |
0 | 737 { |
1247 | 738 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 739 } |
740 | |
741 return StoreStatus_Failure; | |
742 } | |
743 | |
744 | |
238 | 745 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 746 { |
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747 boost::mutex::scoped_lock lock(mutex_); |
238 | 748 target = Json::objectValue; |
0 | 749 |
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750 uint64_t cs = currentStorageSize_; |
1247 | 751 assert(cs == db_.GetTotalCompressedSize()); |
752 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
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753 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 754 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
440
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755 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
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756 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
238 | 757 |
1247 | 758 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
759 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
760 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
761 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 762 } |
763 | |
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764 |
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765 |
585 | 766 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 767 { |
768 // Get the expected number of instances in this series (from the metadata) | |
1238 | 769 int64_t expected; |
770 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 771 { |
772 return SeriesStatus_Unknown; | |
773 } | |
774 | |
775 // Loop over the instances of this series | |
776 std::list<int64_t> children; | |
1247 | 777 db_.GetChildrenInternalId(children, id); |
199 | 778 |
1238 | 779 std::set<int64_t> instances; |
199 | 780 for (std::list<int64_t>::const_iterator |
656 | 781 it = children.begin(); it != children.end(); ++it) |
199 | 782 { |
783 // Get the index of this instance in the series | |
1238 | 784 int64_t index; |
785 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 786 { |
787 return SeriesStatus_Unknown; | |
788 } | |
789 | |
656 | 790 if (!(index > 0 && index <= expected)) |
199 | 791 { |
792 // Out-of-range instance index | |
793 return SeriesStatus_Inconsistent; | |
794 } | |
795 | |
796 if (instances.find(index) != instances.end()) | |
797 { | |
798 // Twice the same instance index | |
799 return SeriesStatus_Inconsistent; | |
800 } | |
801 | |
802 instances.insert(index); | |
803 } | |
804 | |
1238 | 805 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 806 { |
807 return SeriesStatus_Complete; | |
808 } | |
809 else | |
810 { | |
811 return SeriesStatus_Missing; | |
812 } | |
813 } | |
814 | |
815 | |
816 | |
202 | 817 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
818 int64_t resourceId) | |
198
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819 { |
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820 DicomMap tags; |
1247 | 821 db_.GetMainDicomTags(tags, resourceId); |
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822 target["MainDicomTags"] = Json::objectValue; |
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823 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
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824 } |
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825 |
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826 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 827 const std::string& publicId, |
828 ResourceType expectedType) | |
198
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829 { |
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830 result = Json::objectValue; |
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831 |
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832 boost::mutex::scoped_lock lock(mutex_); |
199 | 833 |
198
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834 // Lookup for the requested resource |
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835 int64_t id; |
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836 ResourceType type; |
1294 | 837 if (!db_.LookupResource(id, type, publicId) || |
199 | 838 type != expectedType) |
198
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839 { |
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840 return false; |
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841 } |
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|
842 |
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|
843 // Find the parent resource (if it exists) |
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|
844 if (type != ResourceType_Patient) |
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|
845 { |
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diff
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|
846 int64_t parentId; |
1247 | 847 if (!db_.LookupParent(parentId, id)) |
198
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diff
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|
848 { |
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diff
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|
849 throw OrthancException(ErrorCode_InternalError); |
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|
850 } |
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before refactoring of ServerIndex::GetXXX
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diff
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|
851 |
1247 | 852 std::string parent = db_.GetPublicId(parentId); |
198
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diff
changeset
|
853 |
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diff
changeset
|
854 switch (type) |
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diff
changeset
|
855 { |
269
f6fdf5abe751
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diff
changeset
|
856 case ResourceType_Study: |
f6fdf5abe751
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diff
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|
857 result["ParentPatient"] = parent; |
f6fdf5abe751
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diff
changeset
|
858 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
859 |
269
f6fdf5abe751
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diff
changeset
|
860 case ResourceType_Series: |
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diff
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|
861 result["ParentStudy"] = parent; |
f6fdf5abe751
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diff
changeset
|
862 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
863 |
269
f6fdf5abe751
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diff
changeset
|
864 case ResourceType_Instance: |
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diff
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|
865 result["ParentSeries"] = parent; |
f6fdf5abe751
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diff
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|
866 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
867 |
269
f6fdf5abe751
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diff
changeset
|
868 default: |
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diff
changeset
|
869 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
870 } |
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diff
changeset
|
871 } |
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before refactoring of ServerIndex::GetXXX
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parents:
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diff
changeset
|
872 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
873 // List the children resources |
663cc6c46d0a
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diff
changeset
|
874 std::list<std::string> children; |
1247 | 875 db_.GetChildrenPublicId(children, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
876 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
877 if (type != ResourceType_Instance) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
878 { |
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before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
879 Json::Value c = Json::arrayValue; |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
880 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
881 for (std::list<std::string>::const_iterator |
656 | 882 it = children.begin(); it != children.end(); ++it) |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
883 { |
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diff
changeset
|
884 c.append(*it); |
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
885 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
886 |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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parents:
197
diff
changeset
|
887 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
888 { |
269
f6fdf5abe751
recycling up and running
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diff
changeset
|
889 case ResourceType_Patient: |
f6fdf5abe751
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268
diff
changeset
|
890 result["Studies"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
891 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
892 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
893 case ResourceType_Study: |
f6fdf5abe751
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parents:
268
diff
changeset
|
894 result["Series"] = c; |
f6fdf5abe751
recycling up and running
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parents:
268
diff
changeset
|
895 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
896 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
897 case ResourceType_Series: |
f6fdf5abe751
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parents:
268
diff
changeset
|
898 result["Instances"] = c; |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
899 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
900 |
269
f6fdf5abe751
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parents:
268
diff
changeset
|
901 default: |
f6fdf5abe751
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268
diff
changeset
|
902 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
903 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
904 } |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
905 |
663cc6c46d0a
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197
diff
changeset
|
906 // Set the resource type |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
changeset
|
907 switch (type) |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
908 { |
269
f6fdf5abe751
recycling up and running
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268
diff
changeset
|
909 case ResourceType_Patient: |
f6fdf5abe751
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268
diff
changeset
|
910 result["Type"] = "Patient"; |
f6fdf5abe751
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268
diff
changeset
|
911 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
912 |
269
f6fdf5abe751
recycling up and running
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parents:
268
diff
changeset
|
913 case ResourceType_Study: |
f6fdf5abe751
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268
diff
changeset
|
914 result["Type"] = "Study"; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
915 break; |
199 | 916 |
269
f6fdf5abe751
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268
diff
changeset
|
917 case ResourceType_Series: |
f6fdf5abe751
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268
diff
changeset
|
918 { |
f6fdf5abe751
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268
diff
changeset
|
919 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
920 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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197
diff
changeset
|
921 |
1238 | 922 int64_t i; |
1237 | 923 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 924 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
925 else |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
926 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
927 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
928 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
929 } |
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
930 |
269
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
931 case ResourceType_Instance: |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
932 { |
f6fdf5abe751
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268
diff
changeset
|
933 result["Type"] = "Instance"; |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
934 |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
935 FileInfo attachment; |
1247 | 936 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
937 { |
f6fdf5abe751
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parents:
268
diff
changeset
|
938 throw OrthancException(ErrorCode_InternalError); |
f6fdf5abe751
recycling up and running
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
268
diff
changeset
|
939 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
940 |
269
f6fdf5abe751
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268
diff
changeset
|
941 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
942 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
943 |
1238 | 944 int64_t i; |
1237 | 945 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 946 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
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268
diff
changeset
|
947 else |
f6fdf5abe751
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
948 result["IndexInSeries"] = Json::nullValue; |
198
663cc6c46d0a
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diff
changeset
|
949 |
269
f6fdf5abe751
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268
diff
changeset
|
950 break; |
f6fdf5abe751
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268
diff
changeset
|
951 } |
f6fdf5abe751
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268
diff
changeset
|
952 |
f6fdf5abe751
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268
diff
changeset
|
953 default: |
f6fdf5abe751
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268
diff
changeset
|
954 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
197
diff
changeset
|
955 } |
663cc6c46d0a
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diff
changeset
|
956 |
663cc6c46d0a
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diff
changeset
|
957 // Record the remaining information |
663cc6c46d0a
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diff
changeset
|
958 result["ID"] = publicId; |
202 | 959 MainDicomTagsToJson(result, id); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
960 |
315 | 961 std::string tmp; |
962 | |
1247 | 963 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 964 { |
315 | 965 result["AnonymizedFrom"] = tmp; |
1236 | 966 } |
315 | 967 |
1247 | 968 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 969 { |
315 | 970 result["ModifiedFrom"] = tmp; |
1236 | 971 } |
315 | 972 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
973 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
974 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
975 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
976 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
977 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
978 |
1247 | 979 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 980 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
981 result["LastUpdate"] = tmp; |
1236 | 982 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
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983 } |
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984 |
198
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985 return true; |
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986 } |
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987 |
0 | 988 |
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989 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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990 const std::string& instanceUuid, |
233 | 991 FileContentType contentType) |
0 | 992 { |
206
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993 boost::mutex::scoped_lock lock(mutex_); |
0 | 994 |
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995 int64_t id; |
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996 ResourceType type; |
1294 | 997 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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998 { |
1113
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999 throw OrthancException(ErrorCode_UnknownResource); |
192
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1000 } |
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1001 |
1247 | 1002 if (db_.LookupAttachment(attachment, id, contentType)) |
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1003 { |
233 | 1004 assert(attachment.GetContentType() == contentType); |
232
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1005 return true; |
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1006 } |
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1007 else |
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1008 { |
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1009 return false; |
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1010 } |
192
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1011 } |
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1012 |
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1013 |
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1014 |
0 | 1015 void ServerIndex::GetAllUuids(Json::Value& target, |
190 | 1016 ResourceType resourceType) |
0 | 1017 { |
1241 | 1018 std::list<std::string> lst; |
1019 | |
1020 { | |
1021 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1022 db_.GetAllPublicIds(lst, resourceType); |
1241 | 1023 } |
1024 | |
1025 target = Json::arrayValue; | |
1026 for (std::list<std::string>::const_iterator | |
1027 it = lst.begin(); it != lst.end(); it++) | |
1028 { | |
1029 target.append(*it); | |
1030 } | |
0 | 1031 } |
1032 | |
1033 | |
1244 | 1034 template <typename T> |
1035 static void FormatLog(Json::Value& target, | |
1036 const std::list<T>& log, | |
1037 const std::string& name, | |
1038 bool done, | |
1039 int64_t since) | |
1240 | 1040 { |
1041 Json::Value items = Json::arrayValue; | |
1244 | 1042 for (typename std::list<T>::const_iterator |
1043 it = log.begin(); it != log.end(); it++) | |
1240 | 1044 { |
1045 Json::Value item; | |
1046 it->Format(item); | |
1047 items.append(item); | |
1048 } | |
1049 | |
1050 target = Json::objectValue; | |
1244 | 1051 target[name] = items; |
1240 | 1052 target["Done"] = done; |
1053 | |
1244 | 1054 int64_t last = (log.size() == 0 ? since : log.back().GetSeq()); |
1240 | 1055 target["Last"] = static_cast<int>(last); |
1056 } | |
1057 | |
1058 | |
1247 | 1059 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1060 int64_t since, |
0 | 1061 unsigned int maxResults) |
1062 { | |
1240 | 1063 std::list<ServerIndexChange> changes; |
1064 bool done; | |
1065 | |
1066 { | |
1067 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1068 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1069 } |
1070 | |
1244 | 1071 FormatLog(target, changes, "Changes", done, since); |
237
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1072 } |
0 | 1073 |
1240 | 1074 |
1247 | 1075 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1076 { |
1240 | 1077 std::list<ServerIndexChange> changes; |
1078 | |
1079 { | |
1080 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1081 db_.GetLastChange(changes); |
1240 | 1082 } |
1083 | |
1244 | 1084 FormatLog(target, changes, "Changes", true, 0); |
0 | 1085 } |
231 | 1086 |
1240 | 1087 |
231 | 1088 void ServerIndex::LogExportedResource(const std::string& publicId, |
1089 const std::string& remoteModality) | |
1090 { | |
1091 boost::mutex::scoped_lock lock(mutex_); | |
1092 | |
1093 int64_t id; | |
1094 ResourceType type; | |
1294 | 1095 if (!db_.LookupResource(id, type, publicId)) |
231 | 1096 { |
1097 throw OrthancException(ErrorCode_InternalError); | |
1098 } | |
1099 | |
1100 std::string patientId; | |
1101 std::string studyInstanceUid; | |
1102 std::string seriesInstanceUid; | |
1103 std::string sopInstanceUid; | |
1104 | |
1105 int64_t currentId = id; | |
1106 ResourceType currentType = type; | |
1107 | |
1108 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1109 bool done = false; | |
1110 while (!done) | |
1111 { | |
1112 DicomMap map; | |
1247 | 1113 db_.GetMainDicomTags(map, currentId); |
231 | 1114 |
1115 switch (currentType) | |
1116 { | |
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1117 case ResourceType_Patient: |
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1118 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1119 done = true; |
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1120 break; |
231 | 1121 |
269
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1122 case ResourceType_Study: |
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1123 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1124 currentType = ResourceType_Patient; |
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1125 break; |
231 | 1126 |
269
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1127 case ResourceType_Series: |
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1128 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1129 currentType = ResourceType_Study; |
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1130 break; |
231 | 1131 |
269
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1132 case ResourceType_Instance: |
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1133 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1134 currentType = ResourceType_Series; |
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1135 break; |
231 | 1136 |
269
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1137 default: |
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1138 throw OrthancException(ErrorCode_InternalError); |
231 | 1139 } |
1140 | |
1141 // If we have not reached the Patient level, find the parent of | |
1142 // the current resource | |
1143 if (!done) | |
1144 { | |
1247 | 1145 bool ok = db_.LookupParent(currentId, currentId); |
375
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1146 assert(ok); |
231 | 1147 } |
1148 } | |
1149 | |
1235 | 1150 // No need for a SQLite::ITransaction here, as we only insert 1 record |
1246 | 1151 ExportedResource resource(-1, |
1152 type, | |
1153 publicId, | |
1154 remoteModality, | |
1155 Toolbox::GetNowIsoString(), | |
1156 patientId, | |
1157 studyInstanceUid, | |
1158 seriesInstanceUid, | |
1159 sopInstanceUid); | |
1247 | 1160 db_.LogExportedResource(resource); |
231 | 1161 } |
1162 | |
1163 | |
1247 | 1164 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1165 int64_t since, |
1166 unsigned int maxResults) | |
1167 { | |
1244 | 1168 std::list<ExportedResource> exported; |
1169 bool done; | |
1170 | |
1171 { | |
1172 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1173 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1174 } |
1175 | |
1176 FormatLog(target, exported, "Exports", done, since); | |
231 | 1177 } |
237
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1178 |
1244 | 1179 |
1247 | 1180 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1181 { |
1244 | 1182 std::list<ExportedResource> exported; |
1183 | |
1184 { | |
1185 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1186 db_.GetLastExportedResource(exported); |
1244 | 1187 } |
1188 | |
1189 FormatLog(target, exported, "Exports", true, 0); | |
237
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1190 } |
268
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1191 |
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1192 |
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1193 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1194 { |
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1195 if (maximumStorageSize_ != 0) |
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1196 { |
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1197 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1198 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1199 |
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1200 if (currentSize + instanceSize > maximumStorageSize_) |
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1201 { |
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1202 return true; |
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1203 } |
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1204 } |
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1205 |
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1206 if (maximumPatients_ != 0) |
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1207 { |
1247 | 1208 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1209 if (patientCount > maximumPatients_) |
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1210 { |
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1211 return true; |
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1212 } |
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1213 } |
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1214 |
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1215 return false; |
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1216 } |
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1217 |
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1218 |
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1219 void ServerIndex::Recycle(uint64_t instanceSize, |
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1220 const std::string& newPatientId) |
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1221 { |
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1222 if (!IsRecyclingNeeded(instanceSize)) |
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1223 { |
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1224 return; |
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1225 } |
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1226 |
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1227 // Check whether other DICOM instances from this patient are |
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1228 // already stored |
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1229 int64_t patientToAvoid; |
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1230 ResourceType type; |
1294 | 1231 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1232 |
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1233 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1234 { |
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1235 throw OrthancException(ErrorCode_InternalError); |
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1236 } |
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1237 |
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1238 // Iteratively select patient to remove until there is enough |
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1239 // space in the DICOM store |
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1240 int64_t patientToRecycle; |
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1241 while (true) |
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1242 { |
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1243 // If other instances of this patient are already in the store, |
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1244 // we must avoid to recycle them |
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1245 bool ok = hasPatientToAvoid ? |
1247 | 1246 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1247 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1248 |
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1249 if (!ok) |
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1250 { |
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1251 throw OrthancException(ErrorCode_FullStorage); |
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1252 } |
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1253 |
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1254 LOG(INFO) << "Recycling one patient"; |
1247 | 1255 db_.DeleteResource(patientToRecycle); |
269
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1256 |
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1257 if (!IsRecyclingNeeded(instanceSize)) |
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1258 { |
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1259 // OK, we're done |
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1260 break; |
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1261 } |
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1262 } |
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1263 } |
269
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1264 |
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1265 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1266 { |
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1267 boost::mutex::scoped_lock lock(mutex_); |
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1268 maximumPatients_ = count; |
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1269 |
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1270 if (count == 0) |
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1271 { |
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1272 LOG(WARNING) << "No limit on the number of stored patients"; |
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1273 } |
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1274 else |
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1275 { |
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1276 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1277 } |
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1278 |
269
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1279 StandaloneRecycling(); |
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1280 } |
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1281 |
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1282 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1283 { |
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1284 boost::mutex::scoped_lock lock(mutex_); |
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1285 maximumStorageSize_ = size; |
270
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1286 |
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1287 if (size == 0) |
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1288 { |
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1289 LOG(WARNING) << "No limit on the size of the storage area"; |
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1290 } |
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1291 else |
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1292 { |
440
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1293 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1294 } |
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1295 |
269
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1296 StandaloneRecycling(); |
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1297 } |
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1298 |
272
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1299 void ServerIndex::StandaloneRecycling() |
269
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1300 { |
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1301 // WARNING: No mutex here, do not include this as a public method |
278
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1302 Transaction t(*this); |
269
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1303 Recycle(0, ""); |
278
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1304 t.Commit(0); |
269
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1305 } |
272
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1306 |
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1307 |
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1308 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1309 { |
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1310 boost::mutex::scoped_lock lock(mutex_); |
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1311 |
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1312 // Lookup for the requested resource |
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1313 int64_t id; |
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1314 ResourceType type; |
1294 | 1315 if (!db_.LookupResource(id, type, publicId) || |
272
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1316 type != ResourceType_Patient) |
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1317 { |
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1318 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1319 } |
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1320 |
1247 | 1321 return db_.IsProtectedPatient(id); |
272
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1322 } |
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1323 |
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1324 |
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1325 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1326 bool isProtected) |
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1327 { |
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1328 boost::mutex::scoped_lock lock(mutex_); |
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1329 |
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1330 // Lookup for the requested resource |
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1331 int64_t id; |
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1332 ResourceType type; |
1294 | 1333 if (!db_.LookupResource(id, type, publicId) || |
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1334 type != ResourceType_Patient) |
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1335 { |
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1336 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1337 } |
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1338 |
1235 | 1339 // No need for a SQLite::ITransaction here, as we only make 1 write to the DB |
1247 | 1340 db_.SetProtectedPatient(id, isProtected); |
272
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1341 |
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1342 if (isProtected) |
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1343 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1344 else |
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1345 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1346 } |
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1347 |
304 | 1348 |
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1349 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1350 const std::string& publicId) |
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1351 { |
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1352 result.clear(); |
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1353 |
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1354 boost::mutex::scoped_lock lock(mutex_); |
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1355 |
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1356 ResourceType type; |
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1357 int64_t resource; |
1294 | 1358 if (!db_.LookupResource(resource, type, publicId)) |
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1359 { |
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1360 throw OrthancException(ErrorCode_UnknownResource); |
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1361 } |
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1362 |
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1363 if (type == ResourceType_Instance) |
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1364 { |
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1365 // An instance cannot have a child |
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1366 throw OrthancException(ErrorCode_BadParameterType); |
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1367 } |
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1368 |
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1369 std::list<int64_t> tmp; |
1247 | 1370 db_.GetChildrenInternalId(tmp, resource); |
714
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1371 |
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1372 for (std::list<int64_t>::const_iterator |
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1373 it = tmp.begin(); it != tmp.end(); ++it) |
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1374 { |
1247 | 1375 result.push_back(db_.GetPublicId(*it)); |
714
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1376 } |
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1377 } |
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1378 |
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1379 |
304 | 1380 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1381 const std::string& publicId) | |
1382 { | |
1383 result.clear(); | |
1384 | |
1385 boost::mutex::scoped_lock lock(mutex_); | |
1386 | |
1387 ResourceType type; | |
1388 int64_t top; | |
1294 | 1389 if (!db_.LookupResource(top, type, publicId)) |
304 | 1390 { |
1391 throw OrthancException(ErrorCode_UnknownResource); | |
1392 } | |
1393 | |
1394 if (type == ResourceType_Instance) | |
1395 { | |
1396 // The resource is already an instance: Do not go down the hierarchy | |
1397 result.push_back(publicId); | |
1398 return; | |
1399 } | |
1400 | |
1401 std::stack<int64_t> toExplore; | |
1402 toExplore.push(top); | |
1403 | |
1404 std::list<int64_t> tmp; | |
1405 | |
1406 while (!toExplore.empty()) | |
1407 { | |
1408 // Get the internal ID of the current resource | |
1409 int64_t resource = toExplore.top(); | |
1410 toExplore.pop(); | |
1411 | |
1247 | 1412 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1413 { |
1247 | 1414 result.push_back(db_.GetPublicId(resource)); |
304 | 1415 } |
1416 else | |
1417 { | |
1418 // Tag all the children of this resource as to be explored | |
1247 | 1419 db_.GetChildrenInternalId(tmp, resource); |
304 | 1420 for (std::list<int64_t>::const_iterator |
656 | 1421 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1422 { |
1423 toExplore.push(*it); | |
1424 } | |
1425 } | |
1426 } | |
1427 } | |
1428 | |
306
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1429 |
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1430 void ServerIndex::SetMetadata(const std::string& publicId, |
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1431 MetadataType type, |
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1432 const std::string& value) |
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1433 { |
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1434 boost::mutex::scoped_lock lock(mutex_); |
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1435 |
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1436 ResourceType rtype; |
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1437 int64_t id; |
1294 | 1438 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1439 { |
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1440 throw OrthancException(ErrorCode_UnknownResource); |
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1441 } |
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1442 |
1247 | 1443 db_.SetMetadata(id, type, value); |
306
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1444 } |
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1445 |
438 | 1446 |
1447 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1448 MetadataType type) | |
1449 { | |
1450 boost::mutex::scoped_lock lock(mutex_); | |
1451 | |
1452 ResourceType rtype; | |
1453 int64_t id; | |
1294 | 1454 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1455 { |
1456 throw OrthancException(ErrorCode_UnknownResource); | |
1457 } | |
1458 | |
1247 | 1459 db_.DeleteMetadata(id, type); |
438 | 1460 } |
1461 | |
1462 | |
306
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1463 bool ServerIndex::LookupMetadata(std::string& target, |
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1464 const std::string& publicId, |
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1465 MetadataType type) |
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1466 { |
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|
1467 boost::mutex::scoped_lock lock(mutex_); |
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1468 |
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|
1469 ResourceType rtype; |
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1470 int64_t id; |
1294 | 1471 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1472 { |
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1473 throw OrthancException(ErrorCode_UnknownResource); |
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1474 } |
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1475 |
1247 | 1476 return db_.LookupMetadata(target, id, type); |
306
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1477 } |
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1478 |
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1479 |
739 | 1480 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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|
1481 const std::string& publicId) |
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|
1482 { |
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1483 boost::mutex::scoped_lock lock(mutex_); |
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|
1484 |
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|
1485 ResourceType rtype; |
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|
1486 int64_t id; |
1294 | 1487 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1488 { |
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|
1489 throw OrthancException(ErrorCode_UnknownResource); |
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|
1490 } |
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|
1491 |
1247 | 1492 db_.ListAvailableMetadata(target, id); |
436
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|
1493 } |
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|
1494 |
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|
1495 |
697
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|
1496 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1497 const std::string& publicId, |
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|
1498 ResourceType expectedType) |
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|
1499 { |
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|
1500 boost::mutex::scoped_lock lock(mutex_); |
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|
1501 |
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diff
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|
1502 ResourceType type; |
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|
1503 int64_t id; |
1294 | 1504 if (!db_.LookupResource(id, type, publicId) || |
697
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|
1505 expectedType != type) |
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|
1506 { |
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|
1507 throw OrthancException(ErrorCode_UnknownResource); |
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diff
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|
1508 } |
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|
1509 |
1247 | 1510 db_.ListAvailableAttachments(target, id); |
697
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|
1511 } |
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|
1512 |
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|
1513 |
306
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|
1514 bool ServerIndex::LookupParent(std::string& target, |
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1515 const std::string& publicId) |
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1516 { |
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|
1517 boost::mutex::scoped_lock lock(mutex_); |
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1518 |
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1519 ResourceType type; |
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1520 int64_t id; |
1294 | 1521 if (!db_.LookupResource(id, type, publicId)) |
306
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1522 { |
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1523 throw OrthancException(ErrorCode_UnknownResource); |
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1524 } |
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1525 |
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1526 int64_t parentId; |
1247 | 1527 if (db_.LookupParent(parentId, id)) |
306
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1528 { |
1247 | 1529 target = db_.GetPublicId(parentId); |
306
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1530 return true; |
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1531 } |
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1532 else |
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1533 { |
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1534 return false; |
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1535 } |
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1536 } |
310 | 1537 |
1538 | |
1539 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1540 { | |
1541 boost::mutex::scoped_lock lock(mutex_); | |
311 | 1542 |
1247 | 1543 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
311 | 1544 |
1545 transaction->Begin(); | |
1237 | 1546 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
311 | 1547 transaction->Commit(); |
1548 | |
1549 return seq; | |
310 | 1550 } |
315 | 1551 |
1552 | |
1553 | |
1554 void ServerIndex::LogChange(ChangeType changeType, | |
1555 const std::string& publicId) | |
1556 { | |
1557 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1558 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
315 | 1559 transaction->Begin(); |
1560 | |
1561 int64_t id; | |
1562 ResourceType type; | |
1294 | 1563 if (!db_.LookupResource(id, type, publicId)) |
315 | 1564 { |
1565 throw OrthancException(ErrorCode_UnknownResource); | |
1566 } | |
1567 | |
1237 | 1568 LogChange(id, changeType, type, publicId); |
315 | 1569 |
1570 transaction->Commit(); | |
1571 } | |
413
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1572 |
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1573 |
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1574 void ServerIndex::DeleteChanges() |
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1575 { |
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|
1576 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1577 db_.ClearChanges(); |
413
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1578 } |
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|
1579 |
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|
1580 void ServerIndex::DeleteExportedResources() |
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1581 { |
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|
1582 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1583 db_.ClearExportedResources(); |
413
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1584 } |
440
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|
1585 |
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|
1586 |
646 | 1587 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1588 /* out */ uint64_t& uncompressedSize, | |
1589 /* out */ unsigned int& countStudies, | |
1590 /* out */ unsigned int& countSeries, | |
1591 /* out */ unsigned int& countInstances, | |
1592 /* in */ int64_t id, | |
1593 /* in */ ResourceType type) | |
440
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|
1594 { |
646 | 1595 std::stack<int64_t> toExplore; |
1596 toExplore.push(id); | |
440
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|
1597 |
646 | 1598 countInstances = 0; |
1599 countSeries = 0; | |
1600 countStudies = 0; | |
1601 compressedSize = 0; | |
1602 uncompressedSize = 0; | |
440
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|
1603 |
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diff
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|
1604 while (!toExplore.empty()) |
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1605 { |
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|
1606 // Get the internal ID of the current resource |
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1607 int64_t resource = toExplore.top(); |
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|
1608 toExplore.pop(); |
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|
1609 |
1247 | 1610 ResourceType thisType = db_.GetResourceType(resource); |
440
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|
1611 |
702
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|
1612 std::list<FileContentType> f; |
1247 | 1613 db_.ListAvailableAttachments(f, resource); |
702
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|
1614 |
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|
1615 for (std::list<FileContentType>::const_iterator |
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|
1616 it = f.begin(); it != f.end(); ++it) |
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|
1617 { |
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1618 FileInfo attachment; |
1247 | 1619 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
1620 { |
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|
1621 compressedSize += attachment.GetCompressedSize(); |
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|
1622 uncompressedSize += attachment.GetUncompressedSize(); |
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|
1623 } |
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|
1624 } |
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|
1625 |
440
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|
1626 if (thisType == ResourceType_Instance) |
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|
1627 { |
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|
1628 countInstances++; |
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|
1629 } |
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|
1630 else |
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|
1631 { |
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|
1632 switch (thisType) |
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|
1633 { |
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|
1634 case ResourceType_Study: |
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1635 countStudies++; |
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1636 break; |
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|
1637 |
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|
1638 case ResourceType_Series: |
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|
1639 countSeries++; |
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1640 break; |
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|
1641 |
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|
1642 default: |
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|
1643 break; |
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|
1644 } |
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|
1645 |
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|
1646 // Tag all the children of this resource as to be explored |
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|
1647 std::list<int64_t> tmp; |
1247 | 1648 db_.GetChildrenInternalId(tmp, resource); |
440
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|
1649 for (std::list<int64_t>::const_iterator |
656 | 1650 it = tmp.begin(); it != tmp.end(); ++it) |
440
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|
1651 { |
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|
1652 toExplore.push(*it); |
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|
1653 } |
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|
1654 } |
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|
1655 } |
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|
1656 |
646 | 1657 if (countStudies == 0) |
1658 { | |
1659 countStudies = 1; | |
1660 } | |
1661 | |
1662 if (countSeries == 0) | |
1663 { | |
1664 countSeries = 1; | |
1665 } | |
1666 } | |
1667 | |
1668 | |
1669 | |
1670 void ServerIndex::GetStatistics(Json::Value& target, | |
1671 const std::string& publicId) | |
1672 { | |
1673 boost::mutex::scoped_lock lock(mutex_); | |
1674 | |
1675 ResourceType type; | |
1676 int64_t top; | |
1294 | 1677 if (!db_.LookupResource(top, type, publicId)) |
646 | 1678 { |
1679 throw OrthancException(ErrorCode_UnknownResource); | |
1680 } | |
1681 | |
1682 uint64_t uncompressedSize; | |
1683 uint64_t compressedSize; | |
1684 unsigned int countStudies; | |
1685 unsigned int countSeries; | |
1686 unsigned int countInstances; | |
1687 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1688 countSeries, countInstances, top, type); | |
1689 | |
440
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|
1690 target = Json::objectValue; |
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|
1691 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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|
1692 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
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|
1693 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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|
1694 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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diff
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|
1695 |
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diff
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|
1696 switch (type) |
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diff
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|
1697 { |
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diff
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|
1698 // Do NOT add "break" below this point! |
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diff
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|
1699 case ResourceType_Patient: |
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|
1700 target["CountStudies"] = countStudies; |
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diff
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|
1701 |
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diff
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|
1702 case ResourceType_Study: |
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|
1703 target["CountSeries"] = countSeries; |
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|
1704 |
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|
1705 case ResourceType_Series: |
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|
1706 target["CountInstances"] = countInstances; |
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|
1707 |
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|
1708 case ResourceType_Instance: |
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1709 default: |
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|
1710 break; |
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|
1711 } |
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|
1712 } |
511
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|
1713 |
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|
1714 |
646 | 1715 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1716 /* out */ uint64_t& uncompressedSize, | |
1717 /* out */ unsigned int& countStudies, | |
1718 /* out */ unsigned int& countSeries, | |
1719 /* out */ unsigned int& countInstances, | |
1720 const std::string& publicId) | |
1721 { | |
1722 boost::mutex::scoped_lock lock(mutex_); | |
1723 | |
1724 ResourceType type; | |
1725 int64_t top; | |
1294 | 1726 if (!db_.LookupResource(top, type, publicId)) |
646 | 1727 { |
1728 throw OrthancException(ErrorCode_UnknownResource); | |
1729 } | |
1730 | |
1731 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1732 countSeries, countInstances, top, type); | |
1733 } | |
1734 | |
1735 | |
511
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|
1736 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1737 { |
810
401a9633e492
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1738 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
511
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1739 if (stableAge <= 0) |
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1740 { |
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1741 stableAge = 60; |
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1742 } |
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1743 |
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|
1744 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1745 |
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|
1746 while (!that->done_) |
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1747 { |
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1748 // Check for stable resources each second |
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|
1749 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1750 |
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|
1751 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1752 |
511
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1753 while (!that->unstableResources_.IsEmpty() && |
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|
1754 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1755 { |
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1756 // This DICOM resource has not received any new instance for |
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1757 // some time. It can be considered as stable. |
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1758 |
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1759 UnstableResourcePayload payload; |
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1760 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1761 |
513 | 1762 // Ensure that the resource is still existing before logging the change |
1247 | 1763 if (that->db_.IsExistingResource(id)) |
511
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1764 { |
1177
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1765 switch (payload.GetResourceType()) |
513 | 1766 { |
1177
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1767 case ResourceType_Patient: |
1237 | 1768 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1769 break; |
511
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1770 |
1177
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1771 case ResourceType_Study: |
1237 | 1772 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1773 break; |
511
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1774 |
1177
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1775 case ResourceType_Series: |
1237 | 1776 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1777 break; |
1778 | |
1779 default: | |
1780 throw OrthancException(ErrorCode_InternalError); | |
1781 } | |
1782 | |
1783 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1784 } |
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1785 } |
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1786 } |
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1787 |
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1788 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1789 } |
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1790 |
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1791 |
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1792 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1793 Orthanc::ResourceType type, |
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1794 const std::string& publicId) |
511
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1795 { |
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1796 // WARNING: Before calling this method, "mutex_" must be locked. |
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1797 |
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1798 assert(type == Orthanc::ResourceType_Patient || |
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1799 type == Orthanc::ResourceType_Study || |
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1800 type == Orthanc::ResourceType_Series); |
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1801 |
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1802 UnstableResourcePayload payload(type, publicId); |
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1803 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1804 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1805 |
1237 | 1806 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1807 } |
521 | 1808 |
1809 | |
1810 | |
1162 | 1811 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1812 const DicomTag& tag, | |
1813 const std::string& value, | |
1814 ResourceType type) | |
615 | 1815 { |
1816 result.clear(); | |
1817 | |
1818 boost::mutex::scoped_lock lock(mutex_); | |
1819 | |
1820 std::list<int64_t> id; | |
1247 | 1821 db_.LookupIdentifier(id, tag, value); |
615 | 1822 |
1823 for (std::list<int64_t>::const_iterator | |
656 | 1824 it = id.begin(); it != id.end(); ++it) |
615 | 1825 { |
1247 | 1826 if (db_.GetResourceType(*it) == type) |
615 | 1827 { |
1247 | 1828 result.push_back(db_.GetPublicId(*it)); |
615 | 1829 } |
1830 } | |
1831 } | |
1832 | |
1833 | |
1162 | 1834 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1835 const DicomTag& tag, | |
1836 const std::string& value) | |
521 | 1837 { |
1838 result.clear(); | |
1839 | |
1840 boost::mutex::scoped_lock lock(mutex_); | |
1841 | |
1842 std::list<int64_t> id; | |
1247 | 1843 db_.LookupIdentifier(id, tag, value); |
521 | 1844 |
1845 for (std::list<int64_t>::const_iterator | |
656 | 1846 it = id.begin(); it != id.end(); ++it) |
521 | 1847 { |
1247 | 1848 result.push_back(db_.GetPublicId(*it)); |
521 | 1849 } |
1850 } | |
1851 | |
1852 | |
1162 | 1853 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
1854 const std::string& value) | |
521 | 1855 { |
1856 result.clear(); | |
1857 | |
1858 boost::mutex::scoped_lock lock(mutex_); | |
1859 | |
1860 std::list<int64_t> id; | |
1247 | 1861 db_.LookupIdentifier(id, value); |
521 | 1862 |
1863 for (std::list<int64_t>::const_iterator | |
656 | 1864 it = id.begin(); it != id.end(); ++it) |
521 | 1865 { |
1247 | 1866 result.push_back(std::make_pair(db_.GetResourceType(*it), |
1867 db_.GetPublicId(*it))); | |
521 | 1868 } |
1869 } | |
699
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1870 |
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1871 |
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1872 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1873 const std::string& publicId) |
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1874 { |
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1875 boost::mutex::scoped_lock lock(mutex_); |
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1876 |
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1877 Transaction t(*this); |
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1878 |
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1879 ResourceType resourceType; |
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1880 int64_t resourceId; |
1294 | 1881 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1882 { |
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1883 return StoreStatus_Failure; // Inexistent resource |
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1884 } |
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1885 |
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1886 // Remove possible previous attachment |
1247 | 1887 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1888 |
704
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1889 // Locate the patient of the target resource |
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1890 int64_t patientId = resourceId; |
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1891 for (;;) |
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1892 { |
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1893 int64_t parent; |
1247 | 1894 if (db_.LookupParent(parent, patientId)) |
704
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1895 { |
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1896 // We have not reached the patient level yet |
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1897 patientId = parent; |
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1898 } |
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1899 else |
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1900 { |
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1901 // We have reached the patient level |
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1902 break; |
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1903 } |
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1904 } |
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1905 |
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1906 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1907 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1908 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1909 |
1247 | 1910 db_.AddAttachment(resourceId, attachment); |
699
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1911 |
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1912 t.Commit(attachment.GetCompressedSize()); |
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1913 |
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1914 return StoreStatus_Success; |
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1915 } |
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1916 |
702
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1917 |
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1918 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1919 FileContentType type) |
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1920 { |
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1921 boost::mutex::scoped_lock lock(mutex_); |
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1922 |
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1923 Transaction t(*this); |
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1924 |
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1925 ResourceType rtype; |
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1926 int64_t id; |
1294 | 1927 if (!db_.LookupResource(id, rtype, publicId)) |
702
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1928 { |
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1929 throw OrthancException(ErrorCode_UnknownResource); |
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1930 } |
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1931 |
1247 | 1932 db_.DeleteAttachment(id, type); |
702
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1933 |
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1934 t.Commit(0); |
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1935 } |
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1936 |
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1937 |
1002
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1938 bool ServerIndex::GetMetadata(Json::Value& target, |
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1939 const std::string& publicId) |
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1940 { |
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1941 boost::mutex::scoped_lock lock(mutex_); |
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1942 |
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1943 target = Json::objectValue; |
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1944 |
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1945 ResourceType type; |
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1946 int64_t id; |
1294 | 1947 if (!db_.LookupResource(id, type, publicId)) |
1002
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1948 { |
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1949 return false; |
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1950 } |
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1951 |
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1952 std::list<MetadataType> metadata; |
1247 | 1953 db_.ListAvailableMetadata(metadata, id); |
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1954 |
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1955 for (std::list<MetadataType>::const_iterator |
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1956 it = metadata.begin(); it != metadata.end(); it++) |
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1957 { |
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1958 std::string key = EnumerationToString(*it); |
1238 | 1959 |
1960 std::string value; | |
1247 | 1961 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 1962 { |
1963 value.clear(); | |
1964 } | |
1965 | |
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1966 target[key] = value; |
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1967 } |
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1968 |
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1969 return true; |
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1970 } |
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1971 |
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1972 |
1249
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1973 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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1974 const std::string& value) |
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1975 { |
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1976 boost::mutex::scoped_lock lock(mutex_); |
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1977 db_.SetGlobalProperty(property, value); |
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1978 } |
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1979 |
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1980 |
1218
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1981 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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1982 const std::string& defaultValue) |
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1983 { |
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1984 boost::mutex::scoped_lock lock(mutex_); |
1239 | 1985 |
1986 std::string value; | |
1247 | 1987 if (db_.LookupGlobalProperty(value, property)) |
1239 | 1988 { |
1989 return value; | |
1990 } | |
1991 else | |
1992 { | |
1993 return defaultValue; | |
1994 } | |
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1995 } |
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1996 |
0 | 1997 } |