Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1306:8cd5784a6d80
IDatabaseWrapper::HasFlushToDisk()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Tue, 10 Feb 2015 17:17:25 +0100 |
parents | 536515f87cb4 |
children | 61ce8147f30d |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
0 | 43 #include "../Core/Toolbox.h" |
44 #include "../Core/Uuid.h" | |
45 #include "../Core/DicomFormat/DicomArray.h" | |
46 #include "FromDcmtkBridge.h" | |
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47 #include "ServerContext.h" |
0 | 48 |
49 #include <boost/lexical_cast.hpp> | |
50 #include <stdio.h> | |
108 | 51 #include <glog/logging.h> |
0 | 52 |
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53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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54 |
62 | 55 namespace Orthanc |
0 | 56 { |
57 namespace Internals | |
58 { | |
202 | 59 class ServerIndexListener : public IServerIndexListener |
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60 { |
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61 private: |
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62 struct FileToRemove |
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63 { |
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64 private: |
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65 std::string uuid_; |
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66 FileContentType type_; |
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67 |
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68 public: |
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69 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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70 type_(info.GetContentType()) |
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71 { |
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72 } |
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73 |
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74 const std::string& GetUuid() const |
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75 { |
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76 return uuid_; |
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77 } |
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78 |
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79 FileContentType GetContentType() const |
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80 { |
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81 return type_; |
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82 } |
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83 }; |
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84 |
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85 ServerContext& context_; |
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86 bool hasRemainingLevel_; |
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87 ResourceType remainingType_; |
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88 std::string remainingPublicId_; |
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89 std::list<FileToRemove> pendingFilesToRemove_; |
1196 | 90 std::list<ServerIndexChange> pendingChanges_; |
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91 uint64_t sizeOfFilesToRemove_; |
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92 bool insideTransaction_; |
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93 |
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94 void Reset() |
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95 { |
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96 sizeOfFilesToRemove_ = 0; |
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97 hasRemainingLevel_ = false; |
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98 pendingFilesToRemove_.clear(); |
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99 pendingChanges_.clear(); |
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100 } |
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101 |
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102 public: |
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103 ServerIndexListener(ServerContext& context) : context_(context), |
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104 insideTransaction_(false) |
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105 { |
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106 Reset(); |
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107 assert(ResourceType_Patient < ResourceType_Study && |
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108 ResourceType_Study < ResourceType_Series && |
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109 ResourceType_Series < ResourceType_Instance); |
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110 } |
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111 |
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112 void StartTransaction() |
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113 { |
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114 Reset(); |
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115 insideTransaction_ = true; |
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116 } |
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117 |
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118 void EndTransaction() |
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119 { |
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120 insideTransaction_ = false; |
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121 } |
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122 |
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123 uint64_t GetSizeOfFilesToRemove() |
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124 { |
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125 return sizeOfFilesToRemove_; |
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126 } |
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127 |
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128 void CommitFilesToRemove() |
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129 { |
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130 for (std::list<FileToRemove>::const_iterator |
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131 it = pendingFilesToRemove_.begin(); |
656 | 132 it != pendingFilesToRemove_.end(); ++it) |
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133 { |
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134 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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135 } |
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136 } |
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137 |
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138 void CommitChanges() |
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139 { |
1196 | 140 for (std::list<ServerIndexChange>::const_iterator |
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141 it = pendingChanges_.begin(); |
1304 | 142 it != pendingChanges_.end(); ++it) |
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143 { |
1198 | 144 context_.SignalChange(*it); |
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145 } |
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146 } |
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147 |
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148 virtual void SignalRemainingAncestor(ResourceType parentType, |
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149 const std::string& publicId) |
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150 { |
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151 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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152 |
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153 if (hasRemainingLevel_) |
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154 { |
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155 if (parentType < remainingType_) |
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156 { |
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157 remainingType_ = parentType; |
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158 remainingPublicId_ = publicId; |
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159 } |
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160 } |
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161 else |
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162 { |
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163 hasRemainingLevel_ = true; |
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164 remainingType_ = parentType; |
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165 remainingPublicId_ = publicId; |
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166 } |
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167 } |
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168 |
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169 virtual void SignalFileDeleted(const FileInfo& info) |
201
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170 { |
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171 assert(Toolbox::IsUuid(info.GetUuid())); |
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172 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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173 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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174 } |
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175 |
1198 | 176 virtual void SignalChange(const ServerIndexChange& change) |
1158 | 177 { |
1198 | 178 LOG(INFO) << "Change related to resource " << change.GetPublicId() << " of type " |
179 << EnumerationToString(change.GetResourceType()) << ": " | |
180 << EnumerationToString(change.GetChangeType()); | |
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181 |
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182 if (insideTransaction_) |
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183 { |
1198 | 184 pendingChanges_.push_back(change); |
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185 } |
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186 else |
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187 { |
1198 | 188 context_.SignalChange(change); |
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189 } |
1158 | 190 } |
191 | |
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192 bool HasRemainingLevel() const |
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193 { |
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194 return hasRemainingLevel_; |
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195 } |
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196 |
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197 ResourceType GetRemainingType() const |
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198 { |
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199 assert(HasRemainingLevel()); |
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200 return remainingType_; |
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201 } |
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202 |
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203 const std::string& GetRemainingPublicId() const |
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204 { |
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205 assert(HasRemainingLevel()); |
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206 return remainingPublicId_; |
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207 } |
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208 }; |
0 | 209 } |
210 | |
211 | |
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212 class ServerIndex::Transaction |
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213 { |
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214 private: |
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215 ServerIndex& index_; |
1235 | 216 std::auto_ptr<SQLite::ITransaction> transaction_; |
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217 bool isCommitted_; |
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218 |
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219 public: |
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220 Transaction(ServerIndex& index) : |
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221 index_(index), |
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222 isCommitted_(false) |
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223 { |
1247 | 224 transaction_.reset(index_.db_.StartTransaction()); |
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225 transaction_->Begin(); |
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226 |
1270 | 227 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
228 | |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 } |
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236 |
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237 void Commit(uint64_t sizeOfAddedFiles) |
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238 { |
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239 if (!isCommitted_) |
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240 { |
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241 transaction_->Commit(); |
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242 |
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243 // We can remove the files once the SQLite transaction has |
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244 // been successfully committed. Some files might have to be |
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245 // deleted because of recycling. |
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246 index_.listener_->CommitFilesToRemove(); |
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247 |
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248 index_.currentStorageSize_ += sizeOfAddedFiles; |
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249 |
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250 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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251 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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252 |
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253 // Send all the pending changes to the Orthanc plugins |
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254 index_.listener_->CommitChanges(); |
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255 |
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256 isCommitted_ = true; |
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257 } |
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258 } |
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259 }; |
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260 |
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261 |
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262 class ServerIndex::UnstableResourcePayload |
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263 { |
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264 private: |
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265 ResourceType type_; |
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266 std::string publicId_; |
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267 boost::posix_time::ptime time_; |
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268 |
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269 public: |
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270 UnstableResourcePayload() : type_(ResourceType_Instance) |
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271 { |
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272 } |
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273 |
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274 UnstableResourcePayload(Orthanc::ResourceType type, |
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275 const std::string& publicId) : |
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276 type_(type), |
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277 publicId_(publicId) |
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278 { |
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279 time_ = boost::posix_time::second_clock::local_time(); |
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280 } |
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281 |
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282 unsigned int GetAge() const |
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283 { |
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284 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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285 } |
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286 |
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287 ResourceType GetResourceType() const |
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288 { |
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289 return type_; |
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290 } |
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291 |
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292 const std::string& GetPublicId() const |
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293 { |
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294 return publicId_; |
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295 } |
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296 }; |
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297 |
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298 |
212 | 299 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 300 const std::string& uuid, |
202 | 301 ResourceType expectedType) |
0 | 302 { |
206
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303 boost::mutex::scoped_lock lock(mutex_); |
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304 |
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305 Transaction t(*this); |
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306 |
202 | 307 int64_t id; |
308 ResourceType type; | |
1294 | 309 if (!db_.LookupResource(id, type, uuid) || |
202 | 310 expectedType != type) |
0 | 311 { |
312 return false; | |
313 } | |
202 | 314 |
1247 | 315 db_.DeleteResource(id); |
0 | 316 |
202 | 317 if (listener_->HasRemainingLevel()) |
0 | 318 { |
202 | 319 ResourceType type = listener_->GetRemainingType(); |
320 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 321 |
322 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 323 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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324 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 325 target["RemainingAncestor"]["ID"] = uuid; |
326 } | |
327 else | |
328 { | |
329 target["RemainingAncestor"] = Json::nullValue; | |
330 } | |
331 | |
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332 t.Commit(0); |
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333 |
0 | 334 return true; |
335 } | |
336 | |
337 | |
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338 void ServerIndex::FlushThread(ServerIndex* that) |
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339 { |
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340 // By default, wait for 10 seconds before flushing |
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341 unsigned int sleep = 10; |
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342 |
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343 try |
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344 { |
744 | 345 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 346 std::string sleepString; |
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347 |
1247 | 348 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 349 Toolbox::IsInteger(sleepString)) |
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350 { |
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351 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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352 } |
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353 } |
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354 catch (boost::bad_lexical_cast&) |
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355 { |
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356 } |
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357 |
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358 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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359 |
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360 unsigned int count = 0; |
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361 |
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362 while (!that->done_) |
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363 { |
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364 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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365 count++; |
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366 if (count < sleep) |
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367 { |
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368 continue; |
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369 } |
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370 |
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371 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 372 that->db_.FlushToDisk(); |
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373 count = 0; |
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374 } |
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375 |
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376 LOG(INFO) << "Stopping the database flushing thread"; |
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377 } |
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378 |
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379 |
1247 | 380 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 381 int64_t series, |
382 const DicomMap& dicomSummary) | |
383 { | |
384 try | |
385 { | |
656 | 386 const DicomValue* value; |
387 const DicomValue* value2; | |
388 | |
433 | 389 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
390 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
391 { | |
392 // Patch for series with temporal positions thanks to Will Ryder | |
393 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
394 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
395 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
396 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
397 } | |
398 | |
399 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
401 { | |
402 // Support of Cardio-PET images | |
403 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
404 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
405 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
410 { | |
411 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
412 } | |
413 } | |
414 catch (boost::bad_lexical_cast) | |
415 { | |
416 } | |
417 } | |
418 | |
419 | |
1237 | 420 |
421 | |
1238 | 422 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 423 int64_t id, |
424 MetadataType type) | |
425 { | |
1238 | 426 std::string s; |
1247 | 427 if (!db_.LookupMetadata(s, id, type)) |
1237 | 428 { |
429 return false; | |
430 } | |
431 | |
432 try | |
433 { | |
1238 | 434 result = boost::lexical_cast<int64_t>(s); |
1237 | 435 return true; |
436 } | |
437 catch (boost::bad_lexical_cast&) | |
438 { | |
439 return false; | |
440 } | |
441 } | |
442 | |
443 | |
1297 | 444 void ServerIndex::LogChange(int64_t internalId, |
445 ChangeType changeType, | |
446 ResourceType resourceType, | |
447 const std::string& publicId) | |
448 { | |
449 ServerIndexChange change(changeType, resourceType, publicId); | |
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450 |
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451 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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452 { |
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453 db_.LogChange(internalId, change); |
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454 } |
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455 |
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456 assert(listener_.get() != NULL); |
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457 listener_->SignalChange(change); |
1297 | 458 } |
459 | |
1237 | 460 |
461 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
462 { | |
463 std::string oldValue; | |
464 | |
1247 | 465 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 466 { |
467 uint64_t oldNumber; | |
468 | |
469 try | |
470 { | |
471 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 472 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 473 return oldNumber + 1; |
474 } | |
475 catch (boost::bad_lexical_cast&) | |
476 { | |
477 throw OrthancException(ErrorCode_InternalError); | |
478 } | |
479 } | |
480 else | |
481 { | |
482 // Initialize the sequence at "1" | |
1247 | 483 db_.SetGlobalProperty(property, "1"); |
1237 | 484 return 1; |
485 } | |
486 } | |
487 | |
488 | |
489 | |
1286 | 490 void ServerIndex::SetMainDicomTags(int64_t resource, |
491 const DicomMap& tags) | |
492 { | |
493 DicomArray flattened(tags); | |
494 for (size_t i = 0; i < flattened.GetSize(); i++) | |
495 { | |
496 const DicomElement& element = flattened.GetElement(i); | |
497 db_.SetMainDicomTag(resource, element.GetTag(), element.GetValue().AsString()); | |
498 } | |
499 } | |
500 | |
501 | |
1299 | 502 int64_t ServerIndex::CreateResource(const std::string& publicId, |
503 ResourceType type) | |
504 { | |
505 int64_t id = db_.CreateResource(publicId, type); | |
506 | |
507 ChangeType changeType; | |
508 switch (type) | |
509 { | |
510 case ResourceType_Patient: | |
511 changeType = ChangeType_NewPatient; | |
512 break; | |
513 | |
514 case ResourceType_Study: | |
515 changeType = ChangeType_NewStudy; | |
516 break; | |
517 | |
518 case ResourceType_Series: | |
519 changeType = ChangeType_NewSeries; | |
520 break; | |
521 | |
522 case ResourceType_Instance: | |
523 changeType = ChangeType_NewInstance; | |
524 break; | |
525 | |
526 default: | |
527 throw OrthancException(ErrorCode_InternalError); | |
528 } | |
529 | |
530 ServerIndexChange change(changeType, type, publicId); | |
531 db_.LogChange(id, change); | |
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532 |
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533 assert(listener_.get() != NULL); |
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534 listener_->SignalChange(change); |
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535 |
1299 | 536 return id; |
537 } | |
538 | |
1286 | 539 |
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540 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 541 IDatabaseWrapper& db) : |
511
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542 done_(false), |
1247 | 543 db_(db), |
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544 maximumStorageSize_(0), |
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545 maximumPatients_(0) |
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546 { |
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547 listener_.reset(new Internals::ServerIndexListener(context)); |
1247 | 548 db_.SetListener(*listener_); |
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549 |
1247 | 550 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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551 |
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552 // Initial recycling if the parameters have changed since the last |
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553 // execution of Orthanc |
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554 StandaloneRecycling(); |
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555 |
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556 if (db.HasFlushToDisk()) |
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557 { |
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558 flushThread_ = boost::thread(FlushThread, this); |
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559 } |
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560 |
511
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561 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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562 } |
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563 |
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564 |
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565 ServerIndex::~ServerIndex() |
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566 { |
511
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567 done_ = true; |
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568 |
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569 if (db_.HasFlushToDisk() && |
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570 flushThread_.joinable()) |
511
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571 { |
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572 flushThread_.join(); |
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573 } |
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574 |
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575 if (unstableResourcesMonitorThread_.joinable()) |
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576 { |
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577 unstableResourcesMonitorThread_.join(); |
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578 } |
0 | 579 } |
580 | |
581 | |
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582 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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583 const DicomMap& dicomSummary, |
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584 const Attachments& attachments, |
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585 const std::string& remoteAet, |
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586 const MetadataMap& metadata) |
0 | 587 { |
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588 boost::mutex::scoped_lock lock(mutex_); |
0 | 589 |
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590 instanceMetadata.clear(); |
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591 |
178 | 592 DicomInstanceHasher hasher(dicomSummary); |
0 | 593 |
594 try | |
595 { | |
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596 Transaction t(*this); |
0 | 597 |
202 | 598 // Do nothing if the instance already exists |
0 | 599 { |
432 | 600 ResourceType type; |
601 int64_t tmp; | |
1294 | 602 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 603 { |
604 assert(type == ResourceType_Instance); | |
1247 | 605 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 606 return StoreStatus_AlreadyStored; |
607 } | |
0 | 608 } |
609 | |
268
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610 // Ensure there is enough room in the storage for the new instance |
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611 uint64_t instanceSize = 0; |
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612 for (Attachments::const_iterator it = attachments.begin(); |
656 | 613 it != attachments.end(); ++it) |
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614 { |
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615 instanceSize += it->GetCompressedSize(); |
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616 } |
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617 |
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618 Recycle(instanceSize, hasher.HashPatient()); |
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619 |
202 | 620 // Create the instance |
1299 | 621 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
202 | 622 |
623 DicomMap dicom; | |
624 dicomSummary.ExtractInstanceInformation(dicom); | |
1286 | 625 SetMainDicomTags(instance, dicom); |
202 | 626 |
432 | 627 // Detect up to which level the patient/study/series/instance |
628 // hierarchy must be created | |
629 int64_t patient = -1, study = -1, series = -1; | |
630 bool isNewPatient = false; | |
631 bool isNewStudy = false; | |
632 bool isNewSeries = false; | |
633 | |
0 | 634 { |
432 | 635 ResourceType dummy; |
636 | |
1294 | 637 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 638 { |
639 assert(dummy == ResourceType_Series); | |
640 // The patient, the study and the series already exist | |
641 | |
1294 | 642 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
643 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 644 assert(ok); |
645 } | |
1294 | 646 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 647 { |
648 assert(dummy == ResourceType_Study); | |
649 | |
650 // New series: The patient and the study already exist | |
651 isNewSeries = true; | |
652 | |
1294 | 653 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 654 assert(ok); |
655 } | |
1294 | 656 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 657 { |
658 assert(dummy == ResourceType_Patient); | |
659 | |
660 // New study and series: The patient already exist | |
661 isNewStudy = true; | |
662 isNewSeries = true; | |
663 } | |
664 else | |
665 { | |
666 // New patient, study and series: Nothing exists | |
667 isNewPatient = true; | |
668 isNewStudy = true; | |
669 isNewSeries = true; | |
670 } | |
671 } | |
672 | |
673 // Create the series if needed | |
674 if (isNewSeries) | |
675 { | |
1299 | 676 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
202 | 677 dicomSummary.ExtractSeriesInformation(dicom); |
1286 | 678 SetMainDicomTags(series, dicom); |
432 | 679 } |
202 | 680 |
432 | 681 // Create the study if needed |
682 if (isNewStudy) | |
683 { | |
1299 | 684 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
432 | 685 dicomSummary.ExtractStudyInformation(dicom); |
1286 | 686 SetMainDicomTags(study, dicom); |
432 | 687 } |
688 | |
689 // Create the patient if needed | |
690 if (isNewPatient) | |
691 { | |
1299 | 692 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
432 | 693 dicomSummary.ExtractPatientInformation(dicom); |
1286 | 694 SetMainDicomTags(patient, dicom); |
432 | 695 } |
202 | 696 |
432 | 697 // Create the parent-to-child links |
1247 | 698 db_.AttachChild(series, instance); |
432 | 699 |
700 if (isNewSeries) | |
701 { | |
1247 | 702 db_.AttachChild(study, series); |
0 | 703 } |
432 | 704 |
705 if (isNewStudy) | |
0 | 706 { |
1247 | 707 db_.AttachChild(patient, study); |
0 | 708 } |
709 | |
432 | 710 // Sanity checks |
711 assert(patient != -1); | |
712 assert(study != -1); | |
713 assert(series != -1); | |
714 assert(instance != -1); | |
715 | |
202 | 716 // Attach the files to the newly created instance |
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717 for (Attachments::const_iterator it = attachments.begin(); |
656 | 718 it != attachments.end(); ++it) |
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719 { |
1247 | 720 db_.AddAttachment(instance, *it); |
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721 } |
202 | 722 |
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723 // Attach the user-specified metadata |
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724 for (MetadataMap::const_iterator |
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725 it = metadata.begin(); it != metadata.end(); ++it) |
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726 { |
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727 switch (it->first.first) |
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728 { |
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729 case ResourceType_Patient: |
1247 | 730 db_.SetMetadata(patient, it->first.second, it->second); |
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731 break; |
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732 |
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733 case ResourceType_Study: |
1247 | 734 db_.SetMetadata(study, it->first.second, it->second); |
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735 break; |
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736 |
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737 case ResourceType_Series: |
1247 | 738 db_.SetMetadata(series, it->first.second, it->second); |
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739 break; |
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740 |
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741 case ResourceType_Instance: |
1247 | 742 db_.SetMetadata(instance, it->first.second, it->second); |
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743 instanceMetadata[it->first.second] = it->second; |
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744 break; |
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745 |
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746 default: |
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747 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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748 } |
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749 } |
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750 |
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751 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 752 std::string now = Toolbox::GetNowIsoString(); |
1247 | 753 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
754 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
755 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
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756 |
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757 // Attach the auto-computed metadata for the instance level, |
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758 // reflecting these additions into the input metadata map |
1247 | 759 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
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760 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
202 | 761 |
1247 | 762 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
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763 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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764 |
202 | 765 const DicomValue* value; |
766 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
767 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 768 { |
1247 | 769 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
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770 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
0 | 771 } |
772 | |
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773 // Check whether the series of this new instance is now completed |
202 | 774 if (isNewSeries) |
775 { | |
1247 | 776 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 777 } |
778 | |
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779 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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780 if (seriesStatus == SeriesStatus_Complete) |
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781 { |
1237 | 782 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
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783 } |
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784 |
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785 // Mark the parent resources of this instance as unstable |
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786 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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787 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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788 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
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789 |
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790 t.Commit(instanceSize); |
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791 |
0 | 792 return StoreStatus_Success; |
793 } | |
62 | 794 catch (OrthancException& e) |
0 | 795 { |
1247 | 796 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 797 } |
798 | |
799 return StoreStatus_Failure; | |
800 } | |
801 | |
802 | |
238 | 803 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 804 { |
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805 boost::mutex::scoped_lock lock(mutex_); |
238 | 806 target = Json::objectValue; |
0 | 807 |
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808 uint64_t cs = currentStorageSize_; |
1247 | 809 assert(cs == db_.GetTotalCompressedSize()); |
810 uint64_t us = db_.GetTotalUncompressedSize(); | |
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811 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 812 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
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813 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
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814 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
238 | 815 |
1247 | 816 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
817 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
818 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
819 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 820 } |
821 | |
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822 |
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823 |
585 | 824 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 825 { |
826 // Get the expected number of instances in this series (from the metadata) | |
1238 | 827 int64_t expected; |
828 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 829 { |
830 return SeriesStatus_Unknown; | |
831 } | |
832 | |
833 // Loop over the instances of this series | |
834 std::list<int64_t> children; | |
1247 | 835 db_.GetChildrenInternalId(children, id); |
199 | 836 |
1238 | 837 std::set<int64_t> instances; |
199 | 838 for (std::list<int64_t>::const_iterator |
656 | 839 it = children.begin(); it != children.end(); ++it) |
199 | 840 { |
841 // Get the index of this instance in the series | |
1238 | 842 int64_t index; |
843 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 844 { |
845 return SeriesStatus_Unknown; | |
846 } | |
847 | |
656 | 848 if (!(index > 0 && index <= expected)) |
199 | 849 { |
850 // Out-of-range instance index | |
851 return SeriesStatus_Inconsistent; | |
852 } | |
853 | |
854 if (instances.find(index) != instances.end()) | |
855 { | |
856 // Twice the same instance index | |
857 return SeriesStatus_Inconsistent; | |
858 } | |
859 | |
860 instances.insert(index); | |
861 } | |
862 | |
1238 | 863 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 864 { |
865 return SeriesStatus_Complete; | |
866 } | |
867 else | |
868 { | |
869 return SeriesStatus_Missing; | |
870 } | |
871 } | |
872 | |
873 | |
874 | |
202 | 875 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
876 int64_t resourceId) | |
198
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877 { |
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878 DicomMap tags; |
1247 | 879 db_.GetMainDicomTags(tags, resourceId); |
198
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880 target["MainDicomTags"] = Json::objectValue; |
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881 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
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882 } |
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883 |
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884 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 885 const std::string& publicId, |
886 ResourceType expectedType) | |
198
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887 { |
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888 result = Json::objectValue; |
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889 |
206
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|
890 boost::mutex::scoped_lock lock(mutex_); |
199 | 891 |
198
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892 // Lookup for the requested resource |
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893 int64_t id; |
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894 ResourceType type; |
1294 | 895 if (!db_.LookupResource(id, type, publicId) || |
199 | 896 type != expectedType) |
198
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897 { |
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898 return false; |
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899 } |
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900 |
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901 // Find the parent resource (if it exists) |
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902 if (type != ResourceType_Patient) |
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903 { |
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904 int64_t parentId; |
1247 | 905 if (!db_.LookupParent(parentId, id)) |
198
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906 { |
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907 throw OrthancException(ErrorCode_InternalError); |
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908 } |
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909 |
1247 | 910 std::string parent = db_.GetPublicId(parentId); |
198
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911 |
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912 switch (type) |
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913 { |
269
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|
914 case ResourceType_Study: |
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915 result["ParentPatient"] = parent; |
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916 break; |
198
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917 |
269
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918 case ResourceType_Series: |
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919 result["ParentStudy"] = parent; |
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920 break; |
198
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921 |
269
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922 case ResourceType_Instance: |
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923 result["ParentSeries"] = parent; |
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924 break; |
198
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|
925 |
269
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926 default: |
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927 throw OrthancException(ErrorCode_InternalError); |
198
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928 } |
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929 } |
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930 |
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931 // List the children resources |
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932 std::list<std::string> children; |
1247 | 933 db_.GetChildrenPublicId(children, id); |
198
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934 |
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935 if (type != ResourceType_Instance) |
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936 { |
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|
937 Json::Value c = Json::arrayValue; |
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938 |
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|
939 for (std::list<std::string>::const_iterator |
656 | 940 it = children.begin(); it != children.end(); ++it) |
198
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941 { |
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|
942 c.append(*it); |
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943 } |
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|
944 |
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|
945 switch (type) |
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|
946 { |
269
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|
947 case ResourceType_Patient: |
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|
948 result["Studies"] = c; |
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|
949 break; |
198
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|
950 |
269
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|
951 case ResourceType_Study: |
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952 result["Series"] = c; |
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|
953 break; |
198
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|
954 |
269
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|
955 case ResourceType_Series: |
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956 result["Instances"] = c; |
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|
957 break; |
198
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|
958 |
269
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|
959 default: |
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960 throw OrthancException(ErrorCode_InternalError); |
198
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|
961 } |
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962 } |
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963 |
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964 // Set the resource type |
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965 switch (type) |
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|
966 { |
269
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|
967 case ResourceType_Patient: |
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968 result["Type"] = "Patient"; |
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969 break; |
198
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|
970 |
269
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changeset
|
971 case ResourceType_Study: |
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|
972 result["Type"] = "Study"; |
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|
973 break; |
199 | 974 |
269
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|
975 case ResourceType_Series: |
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|
976 { |
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|
977 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
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diff
changeset
|
978 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
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979 |
1238 | 980 int64_t i; |
1237 | 981 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 982 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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|
983 else |
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|
984 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
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diff
changeset
|
985 |
269
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|
986 break; |
200
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diff
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|
987 } |
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diff
changeset
|
988 |
269
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|
989 case ResourceType_Instance: |
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|
990 { |
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|
991 result["Type"] = "Instance"; |
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992 |
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993 FileInfo attachment; |
1247 | 994 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
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995 { |
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|
996 throw OrthancException(ErrorCode_InternalError); |
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997 } |
200
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diff
changeset
|
998 |
269
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|
999 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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|
1000 result["FileUuid"] = attachment.GetUuid(); |
200
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|
1001 |
1238 | 1002 int64_t i; |
1237 | 1003 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1004 result["IndexInSeries"] = static_cast<int>(i); |
269
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1005 else |
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1006 result["IndexInSeries"] = Json::nullValue; |
198
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1007 |
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1008 break; |
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1009 } |
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1010 |
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1011 default: |
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1012 throw OrthancException(ErrorCode_InternalError); |
198
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1013 } |
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1014 |
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1015 // Record the remaining information |
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1016 result["ID"] = publicId; |
202 | 1017 MainDicomTagsToJson(result, id); |
198
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1018 |
315 | 1019 std::string tmp; |
1020 | |
1247 | 1021 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1022 { |
315 | 1023 result["AnonymizedFrom"] = tmp; |
1236 | 1024 } |
315 | 1025 |
1247 | 1026 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1027 { |
315 | 1028 result["ModifiedFrom"] = tmp; |
1236 | 1029 } |
315 | 1030 |
511
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1031 if (type == ResourceType_Patient || |
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1032 type == ResourceType_Study || |
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1033 type == ResourceType_Series) |
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1034 { |
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1035 result["IsStable"] = !unstableResources_.Contains(id); |
1148
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1036 |
1247 | 1037 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1038 { |
1148
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1039 result["LastUpdate"] = tmp; |
1236 | 1040 } |
511
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1041 } |
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1042 |
198
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1043 return true; |
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1044 } |
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1045 |
0 | 1046 |
232
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1047 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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1048 const std::string& instanceUuid, |
233 | 1049 FileContentType contentType) |
0 | 1050 { |
206
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1051 boost::mutex::scoped_lock lock(mutex_); |
0 | 1052 |
193
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1053 int64_t id; |
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1054 ResourceType type; |
1294 | 1055 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1056 { |
1113
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1057 throw OrthancException(ErrorCode_UnknownResource); |
192
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1058 } |
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1059 |
1247 | 1060 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1061 { |
233 | 1062 assert(attachment.GetContentType() == contentType); |
232
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1063 return true; |
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1064 } |
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1065 else |
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1066 { |
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1067 return false; |
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1068 } |
192
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1069 } |
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1070 |
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1071 |
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1072 |
0 | 1073 void ServerIndex::GetAllUuids(Json::Value& target, |
190 | 1074 ResourceType resourceType) |
0 | 1075 { |
1241 | 1076 std::list<std::string> lst; |
1077 | |
1078 { | |
1079 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1080 db_.GetAllPublicIds(lst, resourceType); |
1241 | 1081 } |
1082 | |
1083 target = Json::arrayValue; | |
1084 for (std::list<std::string>::const_iterator | |
1304 | 1085 it = lst.begin(); it != lst.end(); ++it) |
1241 | 1086 { |
1087 target.append(*it); | |
1088 } | |
0 | 1089 } |
1090 | |
1091 | |
1244 | 1092 template <typename T> |
1093 static void FormatLog(Json::Value& target, | |
1094 const std::list<T>& log, | |
1095 const std::string& name, | |
1096 bool done, | |
1097 int64_t since) | |
1240 | 1098 { |
1099 Json::Value items = Json::arrayValue; | |
1244 | 1100 for (typename std::list<T>::const_iterator |
1304 | 1101 it = log.begin(); it != log.end(); ++it) |
1240 | 1102 { |
1103 Json::Value item; | |
1104 it->Format(item); | |
1105 items.append(item); | |
1106 } | |
1107 | |
1108 target = Json::objectValue; | |
1244 | 1109 target[name] = items; |
1240 | 1110 target["Done"] = done; |
1111 | |
1305 | 1112 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1113 target["Last"] = static_cast<int>(last); |
1114 } | |
1115 | |
1116 | |
1247 | 1117 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1118 int64_t since, |
0 | 1119 unsigned int maxResults) |
1120 { | |
1240 | 1121 std::list<ServerIndexChange> changes; |
1122 bool done; | |
1123 | |
1124 { | |
1125 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1126 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1127 } |
1128 | |
1244 | 1129 FormatLog(target, changes, "Changes", done, since); |
237
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|
1130 } |
0 | 1131 |
1240 | 1132 |
1247 | 1133 void ServerIndex::GetLastChange(Json::Value& target) |
237
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|
1134 { |
1240 | 1135 std::list<ServerIndexChange> changes; |
1136 | |
1137 { | |
1138 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1139 db_.GetLastChange(changes); |
1240 | 1140 } |
1141 | |
1244 | 1142 FormatLog(target, changes, "Changes", true, 0); |
0 | 1143 } |
231 | 1144 |
1240 | 1145 |
231 | 1146 void ServerIndex::LogExportedResource(const std::string& publicId, |
1147 const std::string& remoteModality) | |
1148 { | |
1149 boost::mutex::scoped_lock lock(mutex_); | |
1150 | |
1151 int64_t id; | |
1152 ResourceType type; | |
1294 | 1153 if (!db_.LookupResource(id, type, publicId)) |
231 | 1154 { |
1155 throw OrthancException(ErrorCode_InternalError); | |
1156 } | |
1157 | |
1158 std::string patientId; | |
1159 std::string studyInstanceUid; | |
1160 std::string seriesInstanceUid; | |
1161 std::string sopInstanceUid; | |
1162 | |
1163 int64_t currentId = id; | |
1164 ResourceType currentType = type; | |
1165 | |
1166 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1167 bool done = false; | |
1168 while (!done) | |
1169 { | |
1170 DicomMap map; | |
1247 | 1171 db_.GetMainDicomTags(map, currentId); |
231 | 1172 |
1173 switch (currentType) | |
1174 { | |
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1175 case ResourceType_Patient: |
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1176 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1177 done = true; |
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1178 break; |
231 | 1179 |
269
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1180 case ResourceType_Study: |
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1181 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1182 currentType = ResourceType_Patient; |
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1183 break; |
231 | 1184 |
269
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1185 case ResourceType_Series: |
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|
1186 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1187 currentType = ResourceType_Study; |
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|
1188 break; |
231 | 1189 |
269
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1190 case ResourceType_Instance: |
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1191 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1192 currentType = ResourceType_Series; |
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1193 break; |
231 | 1194 |
269
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1195 default: |
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1196 throw OrthancException(ErrorCode_InternalError); |
231 | 1197 } |
1198 | |
1199 // If we have not reached the Patient level, find the parent of | |
1200 // the current resource | |
1201 if (!done) | |
1202 { | |
1247 | 1203 bool ok = db_.LookupParent(currentId, currentId); |
375
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1204 assert(ok); |
231 | 1205 } |
1206 } | |
1207 | |
1235 | 1208 // No need for a SQLite::ITransaction here, as we only insert 1 record |
1246 | 1209 ExportedResource resource(-1, |
1210 type, | |
1211 publicId, | |
1212 remoteModality, | |
1213 Toolbox::GetNowIsoString(), | |
1214 patientId, | |
1215 studyInstanceUid, | |
1216 seriesInstanceUid, | |
1217 sopInstanceUid); | |
1247 | 1218 db_.LogExportedResource(resource); |
231 | 1219 } |
1220 | |
1221 | |
1247 | 1222 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1223 int64_t since, |
1224 unsigned int maxResults) | |
1225 { | |
1244 | 1226 std::list<ExportedResource> exported; |
1227 bool done; | |
1228 | |
1229 { | |
1230 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1231 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1232 } |
1233 | |
1234 FormatLog(target, exported, "Exports", done, since); | |
231 | 1235 } |
237
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1236 |
1244 | 1237 |
1247 | 1238 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1239 { |
1244 | 1240 std::list<ExportedResource> exported; |
1241 | |
1242 { | |
1243 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1244 db_.GetLastExportedResource(exported); |
1244 | 1245 } |
1246 | |
1247 FormatLog(target, exported, "Exports", true, 0); | |
237
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1248 } |
268
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1249 |
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1250 |
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1251 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1252 { |
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1253 if (maximumStorageSize_ != 0) |
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1254 { |
278
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|
1255 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1256 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1257 |
269
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1258 if (currentSize + instanceSize > maximumStorageSize_) |
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1259 { |
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1260 return true; |
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1261 } |
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1262 } |
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1263 |
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1264 if (maximumPatients_ != 0) |
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1265 { |
1247 | 1266 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1267 if (patientCount > maximumPatients_) |
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1268 { |
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1269 return true; |
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1270 } |
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1271 } |
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1272 |
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1273 return false; |
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1274 } |
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1275 |
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1276 |
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1277 void ServerIndex::Recycle(uint64_t instanceSize, |
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1278 const std::string& newPatientId) |
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1279 { |
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1280 if (!IsRecyclingNeeded(instanceSize)) |
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1281 { |
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1282 return; |
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1283 } |
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1284 |
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1285 // Check whether other DICOM instances from this patient are |
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1286 // already stored |
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1287 int64_t patientToAvoid; |
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1288 ResourceType type; |
1294 | 1289 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
268
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1290 |
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1291 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1292 { |
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1293 throw OrthancException(ErrorCode_InternalError); |
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1294 } |
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1295 |
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1296 // Iteratively select patient to remove until there is enough |
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1297 // space in the DICOM store |
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1298 int64_t patientToRecycle; |
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1299 while (true) |
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1300 { |
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1301 // If other instances of this patient are already in the store, |
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1302 // we must avoid to recycle them |
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1303 bool ok = hasPatientToAvoid ? |
1247 | 1304 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1305 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1306 |
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1307 if (!ok) |
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1308 { |
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1309 throw OrthancException(ErrorCode_FullStorage); |
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1310 } |
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1311 |
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1312 LOG(INFO) << "Recycling one patient"; |
1247 | 1313 db_.DeleteResource(patientToRecycle); |
269
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1314 |
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1315 if (!IsRecyclingNeeded(instanceSize)) |
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1316 { |
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1317 // OK, we're done |
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1318 break; |
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1319 } |
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1320 } |
268
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1321 } |
269
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1322 |
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1323 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1324 { |
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1325 boost::mutex::scoped_lock lock(mutex_); |
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1326 maximumPatients_ = count; |
270
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1327 |
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1328 if (count == 0) |
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1329 { |
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1330 LOG(WARNING) << "No limit on the number of stored patients"; |
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1331 } |
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1332 else |
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1333 { |
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1334 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1335 } |
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1336 |
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1337 StandaloneRecycling(); |
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1338 } |
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1339 |
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1340 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1341 { |
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1342 boost::mutex::scoped_lock lock(mutex_); |
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1343 maximumStorageSize_ = size; |
270
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1344 |
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1345 if (size == 0) |
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1346 { |
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1347 LOG(WARNING) << "No limit on the size of the storage area"; |
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1348 } |
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1349 else |
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1350 { |
440
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1351 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1352 } |
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1353 |
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1354 StandaloneRecycling(); |
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1355 } |
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1356 |
272
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1357 void ServerIndex::StandaloneRecycling() |
269
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1358 { |
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1359 // WARNING: No mutex here, do not include this as a public method |
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1360 Transaction t(*this); |
269
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1361 Recycle(0, ""); |
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1362 t.Commit(0); |
269
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1363 } |
272
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1364 |
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1365 |
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1366 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1367 { |
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1368 boost::mutex::scoped_lock lock(mutex_); |
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1369 |
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1370 // Lookup for the requested resource |
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1371 int64_t id; |
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1372 ResourceType type; |
1294 | 1373 if (!db_.LookupResource(id, type, publicId) || |
272
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1374 type != ResourceType_Patient) |
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1375 { |
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1376 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1377 } |
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1378 |
1247 | 1379 return db_.IsProtectedPatient(id); |
272
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1380 } |
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1381 |
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1382 |
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1383 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1384 bool isProtected) |
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1385 { |
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1386 boost::mutex::scoped_lock lock(mutex_); |
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1387 |
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1388 // Lookup for the requested resource |
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1389 int64_t id; |
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1390 ResourceType type; |
1294 | 1391 if (!db_.LookupResource(id, type, publicId) || |
272
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1392 type != ResourceType_Patient) |
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1393 { |
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1394 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1395 } |
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1396 |
1235 | 1397 // No need for a SQLite::ITransaction here, as we only make 1 write to the DB |
1247 | 1398 db_.SetProtectedPatient(id, isProtected); |
272
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1399 |
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1400 if (isProtected) |
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1401 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1402 else |
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1403 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1404 } |
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1405 |
304 | 1406 |
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1407 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1408 const std::string& publicId) |
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1409 { |
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1410 result.clear(); |
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1411 |
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1412 boost::mutex::scoped_lock lock(mutex_); |
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1413 |
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1414 ResourceType type; |
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1415 int64_t resource; |
1294 | 1416 if (!db_.LookupResource(resource, type, publicId)) |
714
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1417 { |
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1418 throw OrthancException(ErrorCode_UnknownResource); |
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1419 } |
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1420 |
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1421 if (type == ResourceType_Instance) |
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1422 { |
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1423 // An instance cannot have a child |
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1424 throw OrthancException(ErrorCode_BadParameterType); |
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1425 } |
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1426 |
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1427 std::list<int64_t> tmp; |
1247 | 1428 db_.GetChildrenInternalId(tmp, resource); |
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1429 |
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1430 for (std::list<int64_t>::const_iterator |
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1431 it = tmp.begin(); it != tmp.end(); ++it) |
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1432 { |
1247 | 1433 result.push_back(db_.GetPublicId(*it)); |
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1434 } |
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1435 } |
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1436 |
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1437 |
304 | 1438 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1439 const std::string& publicId) | |
1440 { | |
1441 result.clear(); | |
1442 | |
1443 boost::mutex::scoped_lock lock(mutex_); | |
1444 | |
1445 ResourceType type; | |
1446 int64_t top; | |
1294 | 1447 if (!db_.LookupResource(top, type, publicId)) |
304 | 1448 { |
1449 throw OrthancException(ErrorCode_UnknownResource); | |
1450 } | |
1451 | |
1452 if (type == ResourceType_Instance) | |
1453 { | |
1454 // The resource is already an instance: Do not go down the hierarchy | |
1455 result.push_back(publicId); | |
1456 return; | |
1457 } | |
1458 | |
1459 std::stack<int64_t> toExplore; | |
1460 toExplore.push(top); | |
1461 | |
1462 std::list<int64_t> tmp; | |
1463 | |
1464 while (!toExplore.empty()) | |
1465 { | |
1466 // Get the internal ID of the current resource | |
1467 int64_t resource = toExplore.top(); | |
1468 toExplore.pop(); | |
1469 | |
1247 | 1470 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1471 { |
1247 | 1472 result.push_back(db_.GetPublicId(resource)); |
304 | 1473 } |
1474 else | |
1475 { | |
1476 // Tag all the children of this resource as to be explored | |
1247 | 1477 db_.GetChildrenInternalId(tmp, resource); |
304 | 1478 for (std::list<int64_t>::const_iterator |
656 | 1479 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1480 { |
1481 toExplore.push(*it); | |
1482 } | |
1483 } | |
1484 } | |
1485 } | |
1486 | |
306
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1487 |
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1488 void ServerIndex::SetMetadata(const std::string& publicId, |
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1489 MetadataType type, |
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1490 const std::string& value) |
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1491 { |
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1492 boost::mutex::scoped_lock lock(mutex_); |
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1493 |
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1494 ResourceType rtype; |
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1495 int64_t id; |
1294 | 1496 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1497 { |
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1498 throw OrthancException(ErrorCode_UnknownResource); |
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1499 } |
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1500 |
1247 | 1501 db_.SetMetadata(id, type, value); |
306
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1502 } |
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1503 |
438 | 1504 |
1505 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1506 MetadataType type) | |
1507 { | |
1508 boost::mutex::scoped_lock lock(mutex_); | |
1509 | |
1510 ResourceType rtype; | |
1511 int64_t id; | |
1294 | 1512 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1513 { |
1514 throw OrthancException(ErrorCode_UnknownResource); | |
1515 } | |
1516 | |
1247 | 1517 db_.DeleteMetadata(id, type); |
438 | 1518 } |
1519 | |
1520 | |
306
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1521 bool ServerIndex::LookupMetadata(std::string& target, |
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1522 const std::string& publicId, |
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1523 MetadataType type) |
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1524 { |
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1525 boost::mutex::scoped_lock lock(mutex_); |
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1526 |
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1527 ResourceType rtype; |
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1528 int64_t id; |
1294 | 1529 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1530 { |
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1531 throw OrthancException(ErrorCode_UnknownResource); |
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1532 } |
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1533 |
1247 | 1534 return db_.LookupMetadata(target, id, type); |
306
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1535 } |
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1536 |
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1537 |
739 | 1538 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1539 const std::string& publicId) |
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|
1540 { |
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1541 boost::mutex::scoped_lock lock(mutex_); |
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|
1542 |
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1543 ResourceType rtype; |
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1544 int64_t id; |
1294 | 1545 if (!db_.LookupResource(id, rtype, publicId)) |
436
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|
1546 { |
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|
1547 throw OrthancException(ErrorCode_UnknownResource); |
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1548 } |
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|
1549 |
1247 | 1550 db_.ListAvailableMetadata(target, id); |
436
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1551 } |
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1552 |
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1553 |
697
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1554 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1555 const std::string& publicId, |
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1556 ResourceType expectedType) |
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1557 { |
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1558 boost::mutex::scoped_lock lock(mutex_); |
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1559 |
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1560 ResourceType type; |
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|
1561 int64_t id; |
1294 | 1562 if (!db_.LookupResource(id, type, publicId) || |
697
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1563 expectedType != type) |
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1564 { |
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1565 throw OrthancException(ErrorCode_UnknownResource); |
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1566 } |
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1567 |
1247 | 1568 db_.ListAvailableAttachments(target, id); |
697
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1569 } |
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1570 |
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1571 |
306
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1572 bool ServerIndex::LookupParent(std::string& target, |
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1573 const std::string& publicId) |
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1574 { |
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1575 boost::mutex::scoped_lock lock(mutex_); |
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1576 |
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1577 ResourceType type; |
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1578 int64_t id; |
1294 | 1579 if (!db_.LookupResource(id, type, publicId)) |
306
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1580 { |
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1581 throw OrthancException(ErrorCode_UnknownResource); |
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1582 } |
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1583 |
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1584 int64_t parentId; |
1247 | 1585 if (db_.LookupParent(parentId, id)) |
306
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1586 { |
1247 | 1587 target = db_.GetPublicId(parentId); |
306
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changeset
|
1588 return true; |
326d5a4a5af3
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304
diff
changeset
|
1589 } |
326d5a4a5af3
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304
diff
changeset
|
1590 else |
326d5a4a5af3
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
304
diff
changeset
|
1591 { |
326d5a4a5af3
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Sebastien Jodogne <s.jodogne@gmail.com>
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304
diff
changeset
|
1592 return false; |
326d5a4a5af3
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Sebastien Jodogne <s.jodogne@gmail.com>
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304
diff
changeset
|
1593 } |
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|
1594 } |
310 | 1595 |
1596 | |
1597 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1598 { | |
1599 boost::mutex::scoped_lock lock(mutex_); | |
311 | 1600 |
1247 | 1601 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
311 | 1602 |
1603 transaction->Begin(); | |
1237 | 1604 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
311 | 1605 transaction->Commit(); |
1606 | |
1607 return seq; | |
310 | 1608 } |
315 | 1609 |
1610 | |
1611 | |
1612 void ServerIndex::LogChange(ChangeType changeType, | |
1613 const std::string& publicId) | |
1614 { | |
1615 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1616 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
315 | 1617 transaction->Begin(); |
1618 | |
1619 int64_t id; | |
1620 ResourceType type; | |
1294 | 1621 if (!db_.LookupResource(id, type, publicId)) |
315 | 1622 { |
1623 throw OrthancException(ErrorCode_UnknownResource); | |
1624 } | |
1625 | |
1237 | 1626 LogChange(id, changeType, type, publicId); |
315 | 1627 |
1628 transaction->Commit(); | |
1629 } | |
413
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1630 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1631 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1632 void ServerIndex::DeleteChanges() |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1633 { |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1634 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1635 db_.ClearChanges(); |
413
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1636 } |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1637 |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1638 void ServerIndex::DeleteExportedResources() |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1639 { |
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1640 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1641 db_.ClearExportedResources(); |
413
47d63c941902
clearing /exports and /changes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
399
diff
changeset
|
1642 } |
440
23e5b35e3c5c
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438
diff
changeset
|
1643 |
23e5b35e3c5c
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438
diff
changeset
|
1644 |
646 | 1645 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1646 /* out */ uint64_t& uncompressedSize, | |
1647 /* out */ unsigned int& countStudies, | |
1648 /* out */ unsigned int& countSeries, | |
1649 /* out */ unsigned int& countInstances, | |
1650 /* in */ int64_t id, | |
1651 /* in */ ResourceType type) | |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1652 { |
646 | 1653 std::stack<int64_t> toExplore; |
1654 toExplore.push(id); | |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1655 |
646 | 1656 countInstances = 0; |
1657 countSeries = 0; | |
1658 countStudies = 0; | |
1659 compressedSize = 0; | |
1660 uncompressedSize = 0; | |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1661 |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1662 while (!toExplore.empty()) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1663 { |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
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438
diff
changeset
|
1664 // Get the internal ID of the current resource |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
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438
diff
changeset
|
1665 int64_t resource = toExplore.top(); |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1666 toExplore.pop(); |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
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438
diff
changeset
|
1667 |
1247 | 1668 ResourceType thisType = db_.GetResourceType(resource); |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
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438
diff
changeset
|
1669 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1670 std::list<FileContentType> f; |
1247 | 1671 db_.ListAvailableAttachments(f, resource); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1672 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1673 for (std::list<FileContentType>::const_iterator |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1674 it = f.begin(); it != f.end(); ++it) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1675 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1676 FileInfo attachment; |
1247 | 1677 if (db_.LookupAttachment(attachment, resource, *it)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1678 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1679 compressedSize += attachment.GetCompressedSize(); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1680 uncompressedSize += attachment.GetUncompressedSize(); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1681 } |
7592a48e97e4
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1682 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1683 |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1684 if (thisType == ResourceType_Instance) |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1685 { |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1686 countInstances++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1687 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1688 else |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1689 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1690 switch (thisType) |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1691 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1692 case ResourceType_Study: |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1693 countStudies++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1694 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1695 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1696 case ResourceType_Series: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1697 countSeries++; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1698 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1699 |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1700 default: |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1701 break; |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1702 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1703 |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1704 // Tag all the children of this resource as to be explored |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1705 std::list<int64_t> tmp; |
1247 | 1706 db_.GetChildrenInternalId(tmp, resource); |
440
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1707 for (std::list<int64_t>::const_iterator |
656 | 1708 it = tmp.begin(); it != tmp.end(); ++it) |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1709 { |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1710 toExplore.push(*it); |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1711 } |
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1712 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1713 } |
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
1714 |
646 | 1715 if (countStudies == 0) |
1716 { | |
1717 countStudies = 1; | |
1718 } | |
1719 | |
1720 if (countSeries == 0) | |
1721 { | |
1722 countSeries = 1; | |
1723 } | |
1724 } | |
1725 | |
1726 | |
1727 | |
1728 void ServerIndex::GetStatistics(Json::Value& target, | |
1729 const std::string& publicId) | |
1730 { | |
1731 boost::mutex::scoped_lock lock(mutex_); | |
1732 | |
1733 ResourceType type; | |
1734 int64_t top; | |
1294 | 1735 if (!db_.LookupResource(top, type, publicId)) |
646 | 1736 { |
1737 throw OrthancException(ErrorCode_UnknownResource); | |
1738 } | |
1739 | |
1740 uint64_t uncompressedSize; | |
1741 uint64_t compressedSize; | |
1742 unsigned int countStudies; | |
1743 unsigned int countSeries; | |
1744 unsigned int countInstances; | |
1745 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1746 countSeries, countInstances, top, type); | |
1747 | |
440
23e5b35e3c5c
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438
diff
changeset
|
1748 target = Json::objectValue; |
23e5b35e3c5c
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438
diff
changeset
|
1749 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
23e5b35e3c5c
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diff
changeset
|
1750 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
23e5b35e3c5c
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438
diff
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|
1751 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
23e5b35e3c5c
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diff
changeset
|
1752 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
23e5b35e3c5c
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diff
changeset
|
1753 |
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diff
changeset
|
1754 switch (type) |
23e5b35e3c5c
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diff
changeset
|
1755 { |
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diff
changeset
|
1756 // Do NOT add "break" below this point! |
23e5b35e3c5c
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diff
changeset
|
1757 case ResourceType_Patient: |
23e5b35e3c5c
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diff
changeset
|
1758 target["CountStudies"] = countStudies; |
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diff
changeset
|
1759 |
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diff
changeset
|
1760 case ResourceType_Study: |
23e5b35e3c5c
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diff
changeset
|
1761 target["CountSeries"] = countSeries; |
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diff
changeset
|
1762 |
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diff
changeset
|
1763 case ResourceType_Series: |
23e5b35e3c5c
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diff
changeset
|
1764 target["CountInstances"] = countInstances; |
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diff
changeset
|
1765 |
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diff
changeset
|
1766 case ResourceType_Instance: |
23e5b35e3c5c
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diff
changeset
|
1767 default: |
23e5b35e3c5c
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diff
changeset
|
1768 break; |
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diff
changeset
|
1769 } |
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diff
changeset
|
1770 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
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440
diff
changeset
|
1771 |
3b735fdf320b
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440
diff
changeset
|
1772 |
646 | 1773 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1774 /* out */ uint64_t& uncompressedSize, | |
1775 /* out */ unsigned int& countStudies, | |
1776 /* out */ unsigned int& countSeries, | |
1777 /* out */ unsigned int& countInstances, | |
1778 const std::string& publicId) | |
1779 { | |
1780 boost::mutex::scoped_lock lock(mutex_); | |
1781 | |
1782 ResourceType type; | |
1783 int64_t top; | |
1294 | 1784 if (!db_.LookupResource(top, type, publicId)) |
646 | 1785 { |
1786 throw OrthancException(ErrorCode_UnknownResource); | |
1787 } | |
1788 | |
1789 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1790 countSeries, countInstances, top, type); | |
1791 } | |
1792 | |
1793 | |
511
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1794 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1795 { |
810
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1796 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
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1797 if (stableAge <= 0) |
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1798 { |
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1799 stableAge = 60; |
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1800 } |
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1801 |
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1802 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1803 |
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1804 while (!that->done_) |
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1805 { |
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1806 // Check for stable resources each second |
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1807 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1808 |
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1809 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1810 |
511
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1811 while (!that->unstableResources_.IsEmpty() && |
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1812 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1813 { |
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1814 // This DICOM resource has not received any new instance for |
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1815 // some time. It can be considered as stable. |
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1816 |
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1817 UnstableResourcePayload payload; |
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1818 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1819 |
513 | 1820 // Ensure that the resource is still existing before logging the change |
1247 | 1821 if (that->db_.IsExistingResource(id)) |
511
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1822 { |
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1823 switch (payload.GetResourceType()) |
513 | 1824 { |
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1825 case ResourceType_Patient: |
1237 | 1826 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1827 break; |
511
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1828 |
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1829 case ResourceType_Study: |
1237 | 1830 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1831 break; |
511
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1832 |
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1833 case ResourceType_Series: |
1237 | 1834 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1835 break; |
1836 | |
1837 default: | |
1838 throw OrthancException(ErrorCode_InternalError); | |
1839 } | |
1840 | |
1841 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1842 } |
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1843 } |
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1844 } |
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1845 |
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1846 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1847 } |
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1848 |
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1849 |
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1850 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1851 Orthanc::ResourceType type, |
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1852 const std::string& publicId) |
511
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1853 { |
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1854 // WARNING: Before calling this method, "mutex_" must be locked. |
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1855 |
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1856 assert(type == Orthanc::ResourceType_Patient || |
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1857 type == Orthanc::ResourceType_Study || |
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1858 type == Orthanc::ResourceType_Series); |
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1859 |
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1860 UnstableResourcePayload payload(type, publicId); |
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1861 unstableResources_.AddOrMakeMostRecent(id, payload); |
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1862 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1863 |
1237 | 1864 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1865 } |
521 | 1866 |
1867 | |
1868 | |
1162 | 1869 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1870 const DicomTag& tag, | |
1871 const std::string& value, | |
1872 ResourceType type) | |
615 | 1873 { |
1874 result.clear(); | |
1875 | |
1876 boost::mutex::scoped_lock lock(mutex_); | |
1877 | |
1878 std::list<int64_t> id; | |
1247 | 1879 db_.LookupIdentifier(id, tag, value); |
615 | 1880 |
1881 for (std::list<int64_t>::const_iterator | |
656 | 1882 it = id.begin(); it != id.end(); ++it) |
615 | 1883 { |
1247 | 1884 if (db_.GetResourceType(*it) == type) |
615 | 1885 { |
1247 | 1886 result.push_back(db_.GetPublicId(*it)); |
615 | 1887 } |
1888 } | |
1889 } | |
1890 | |
1891 | |
1162 | 1892 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1893 const DicomTag& tag, | |
1894 const std::string& value) | |
521 | 1895 { |
1896 result.clear(); | |
1897 | |
1898 boost::mutex::scoped_lock lock(mutex_); | |
1899 | |
1900 std::list<int64_t> id; | |
1247 | 1901 db_.LookupIdentifier(id, tag, value); |
521 | 1902 |
1903 for (std::list<int64_t>::const_iterator | |
656 | 1904 it = id.begin(); it != id.end(); ++it) |
521 | 1905 { |
1247 | 1906 result.push_back(db_.GetPublicId(*it)); |
521 | 1907 } |
1908 } | |
1909 | |
1910 | |
1162 | 1911 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
1912 const std::string& value) | |
521 | 1913 { |
1914 result.clear(); | |
1915 | |
1916 boost::mutex::scoped_lock lock(mutex_); | |
1917 | |
1918 std::list<int64_t> id; | |
1247 | 1919 db_.LookupIdentifier(id, value); |
521 | 1920 |
1921 for (std::list<int64_t>::const_iterator | |
656 | 1922 it = id.begin(); it != id.end(); ++it) |
521 | 1923 { |
1247 | 1924 result.push_back(std::make_pair(db_.GetResourceType(*it), |
1925 db_.GetPublicId(*it))); | |
521 | 1926 } |
1927 } | |
699
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1928 |
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1929 |
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1930 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1931 const std::string& publicId) |
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1932 { |
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1933 boost::mutex::scoped_lock lock(mutex_); |
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1934 |
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1935 Transaction t(*this); |
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1936 |
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1937 ResourceType resourceType; |
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1938 int64_t resourceId; |
1294 | 1939 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1940 { |
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1941 return StoreStatus_Failure; // Inexistent resource |
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1942 } |
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1943 |
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1944 // Remove possible previous attachment |
1247 | 1945 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1946 |
704
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1947 // Locate the patient of the target resource |
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1948 int64_t patientId = resourceId; |
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1949 for (;;) |
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1950 { |
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1951 int64_t parent; |
1247 | 1952 if (db_.LookupParent(parent, patientId)) |
704
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1953 { |
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1954 // We have not reached the patient level yet |
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1955 patientId = parent; |
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1956 } |
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1957 else |
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1958 { |
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1959 // We have reached the patient level |
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1960 break; |
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1961 } |
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1962 } |
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1963 |
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1964 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1965 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1966 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1967 |
1247 | 1968 db_.AddAttachment(resourceId, attachment); |
699
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1969 |
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1970 t.Commit(attachment.GetCompressedSize()); |
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1971 |
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1972 return StoreStatus_Success; |
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1973 } |
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1974 |
702
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1975 |
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1976 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1977 FileContentType type) |
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1978 { |
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1979 boost::mutex::scoped_lock lock(mutex_); |
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1980 |
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1981 Transaction t(*this); |
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1982 |
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1983 ResourceType rtype; |
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1984 int64_t id; |
1294 | 1985 if (!db_.LookupResource(id, rtype, publicId)) |
702
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1986 { |
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1987 throw OrthancException(ErrorCode_UnknownResource); |
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1988 } |
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1989 |
1247 | 1990 db_.DeleteAttachment(id, type); |
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1991 |
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1992 t.Commit(0); |
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1993 } |
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1994 |
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1995 |
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1996 bool ServerIndex::GetMetadata(Json::Value& target, |
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1997 const std::string& publicId) |
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1998 { |
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1999 boost::mutex::scoped_lock lock(mutex_); |
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2000 |
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2001 target = Json::objectValue; |
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2002 |
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2003 ResourceType type; |
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2004 int64_t id; |
1294 | 2005 if (!db_.LookupResource(id, type, publicId)) |
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2006 { |
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2007 return false; |
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2008 } |
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2009 |
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2010 std::list<MetadataType> metadata; |
1247 | 2011 db_.ListAvailableMetadata(metadata, id); |
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2012 |
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2013 for (std::list<MetadataType>::const_iterator |
1304 | 2014 it = metadata.begin(); it != metadata.end(); ++it) |
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2015 { |
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2016 std::string key = EnumerationToString(*it); |
1238 | 2017 |
2018 std::string value; | |
1247 | 2019 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2020 { |
2021 value.clear(); | |
2022 } | |
2023 | |
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2024 target[key] = value; |
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2025 } |
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2026 |
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2027 return true; |
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2028 } |
1218
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2029 |
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2030 |
1249
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2031 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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2032 const std::string& value) |
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2033 { |
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2034 boost::mutex::scoped_lock lock(mutex_); |
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2035 db_.SetGlobalProperty(property, value); |
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2036 } |
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2037 |
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2038 |
1218
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2039 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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2040 const std::string& defaultValue) |
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2041 { |
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2042 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2043 |
2044 std::string value; | |
1247 | 2045 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2046 { |
2047 return value; | |
2048 } | |
2049 else | |
2050 { | |
2051 return defaultValue; | |
2052 } | |
1218
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2053 } |
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2054 |
0 | 2055 } |