annotate OrthancFramework/Sources/Images/NumpyWriter.h @ 5169:8b74aa4f3515

enforce the existence of the patient/study/instance while creating its archive
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 24 Feb 2023 18:07:35 +0100
parents 43e613a7756b
children 0ea402b4d901
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
4834
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
4870
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4859
diff changeset
5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
43e613a7756b upgrade to year 2022
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4859
diff changeset
6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
4834
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU Lesser General Public License
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * as published by the Free Software Foundation, either version 3 of
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * the License, or (at your option) any later version.
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * Lesser General Public License for more details.
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU Lesser General Public
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * License along with this program. If not, see
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * <http://www.gnu.org/licenses/>.
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 **/
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #pragma once
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 #if !defined(ORTHANC_ENABLE_ZLIB)
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 # error The macro ORTHANC_ENABLE_ZLIB must be defined
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 #endif
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 #include "IImageWriter.h"
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 #include "../ChunkedBuffer.h"
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 #include "../Compatibility.h" // For ORTHANC_OVERRIDE
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 namespace Orthanc
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35 {
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 class ORTHANC_PUBLIC NumpyWriter : public IImageWriter
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 {
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 protected:
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 #if ORTHANC_SANDBOXED == 0
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 virtual void WriteToFileInternal(const std::string& filename,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 unsigned int width,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 unsigned int height,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 unsigned int pitch,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 PixelFormat format,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 const void* buffer) ORTHANC_OVERRIDE;
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 #endif
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 virtual void WriteToMemoryInternal(std::string& content,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 unsigned int width,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 unsigned int height,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 unsigned int pitch,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 PixelFormat format,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 const void* buffer) ORTHANC_OVERRIDE;
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 private:
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 bool compressed_;
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 public:
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 NumpyWriter();
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 void SetCompressed(bool compressed);
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62
4859
6f780611fc03 fix orthanc framework abi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4834
diff changeset
63 bool IsCompressed() const;
4834
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 static void WriteHeader(ChunkedBuffer& target,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 unsigned int depth, // Must be "0" for 2D images
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67 unsigned int width,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68 unsigned int height,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 PixelFormat format);
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 static void WritePixels(ChunkedBuffer& target,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 const ImageAccessor& image);
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 static void Finalize(std::string& target,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75 ChunkedBuffer& source,
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 bool compress);
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
77 };
bec432ee1094 download of numpy arrays from the REST API
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
78 }