Mercurial > hg > orthanc

annotate OrthancServer/Sources/OrthancFindRequestHandler.cpp @ 5215:8b6da4fdf9fe db-protobuf

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cleaning ResourcesContent::TagValue and ResourcesContent::Metadata
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 03 Apr 2023 14:17:39 +0200
parents 0ea402b4d901
children 3a61fd50f804
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "PrecompiledHeadersServer.h"
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24 #include "OrthancFindRequestHandler.h"
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25
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26 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h"
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27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h"
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28 #include "../../OrthancFramework/Sources/Logging.h"
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29 #include "../../OrthancFramework/Sources/Lua/LuaFunctionCall.h"
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30 #include "../../OrthancFramework/Sources/MetricsRegistry.h"
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31 #include "OrthancConfiguration.h"
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32 #include "Search/DatabaseLookup.h"
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33 #include "ServerContext.h"
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34 #include "ServerToolbox.h"
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35
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36 #include <boost/regex.hpp>
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37
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39 namespace Orthanc
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40 {
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41 static void AddAnswer(DicomFindAnswers& answers,
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42 ServerContext& context,
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43 const std::string& publicId,
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44 const std::string& instanceId,
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45 const DicomMap& mainDicomTags,
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46 const Json::Value* dicomAsJson,
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47 ResourceType level,
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48 const DicomArray& query,
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49 const std::list<DicomTag>& sequencesToReturn,
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50 const std::string& defaultPrivateCreator,
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51 const std::map<uint16_t, std::string>& privateCreators,
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52 const std::string& retrieveAet,
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53 bool allowStorageAccess)
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54 {
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55 ExpandedResource resource;
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56 std::set<DicomTag> requestedTags;
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57
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58 query.GetTags(requestedTags);
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59 requestedTags.erase(DICOM_TAG_QUERY_RETRIEVE_LEVEL); // this is not part of the answer
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60
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61 // reuse ExpandResource to get missing tags and computed tags (ModalitiesInStudy ...). This code is therefore shared between C-Find, tools/find, list-resources and QIDO-RS
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62 context.ExpandResource(resource, publicId, mainDicomTags, instanceId, dicomAsJson, level, requestedTags, ExpandResourceDbFlags_IncludeMainDicomTags, allowStorageAccess);
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63
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64 DicomMap result;
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65
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66 /**
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67 * Add the mandatory "Retrieve AE Title (0008,0054)" tag, which was missing in Orthanc <= 1.7.2.
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68 * http://dicom.nema.org/medical/dicom/current/output/html/part04.html#sect_C.4.1.1.3.2
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69 * https://groups.google.com/g/orthanc-users/c/-7zNTKR_PMU/m/kfjwzEVNAgAJ
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70 **/
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71 result.SetValue(DICOM_TAG_RETRIEVE_AE_TITLE, retrieveAet, false /* not binary */);
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72
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73 for (size_t i = 0; i < query.GetSize(); i++)
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74 {
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75 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL)
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76 {
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77 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052))
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78 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue());
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79 }
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80 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET)
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81 {
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82 // Do not include the encoding, this is handled by class ParsedDicomFile
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83 }
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84 else
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85 {
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86 const DicomTag& tag = query.GetElement(i).GetTag();
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87 const DicomValue* value = resource.tags_.TestAndGetValue(tag);
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88
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89 if (value != NULL &&
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90 !value->IsNull() &&
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91 !value->IsBinary())
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92 {
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93 result.SetValue(tag, value->GetContent(), false);
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94 }
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95 else
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96 {
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97 result.SetValue(tag, "", false);
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98 }
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99 }
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100 }
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101
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102 if (result.GetSize() == 0 &&
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103 sequencesToReturn.empty())
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104 {
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105 CLOG(WARNING, DICOM) << "The C-FIND request does not return any DICOM tag";
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106 }
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107 else if (sequencesToReturn.empty())
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108 {
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109 answers.Add(result);
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110 }
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111 else if (dicomAsJson == NULL)
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112 {
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113 CLOG(WARNING, DICOM) << "C-FIND query requesting a sequence, but reading JSON from disk is disabled";
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114 answers.Add(result);
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115 }
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116 else
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117 {
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118 ParsedDicomFile dicom(result, GetDefaultDicomEncoding(),
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119 true /* be permissive, cf. issue #136 */, defaultPrivateCreator, privateCreators);
1859
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120
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diff changeset
121 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin();
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diff changeset
122 tag != sequencesToReturn.end(); ++tag)
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diff changeset
123 {
3012
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124 assert(dicomAsJson != NULL);
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125 const Json::Value& source = (*dicomAsJson) [tag->Format()];
1859
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126
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127 if (source.type() == Json::objectValue &&
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128 source.isMember("Type") &&
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129 source.isMember("Value") &&
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diff changeset
130 source["Type"].asString() == "Sequence" &&
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diff changeset
131 source["Value"].type() == Json::arrayValue)
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132 {
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diff changeset
133 Json::Value content = Json::arrayValue;
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diff changeset
134
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diff changeset
135 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++)
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parents: 1856
diff changeset
136 {
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diff changeset
137 Json::Value item;
4055
9214e3a7b0a2 moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
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138 Toolbox::SimplifyDicomAsJson(item, source["Value"][i], DicomToJsonFormat_Short);
1859
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139 content.append(item);
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140 }
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diff changeset
141
4011
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142 if (tag->IsPrivate())
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parents: 4007
diff changeset
143 {
4028
1ac958787c01 fix for msvc2008
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diff changeset
144 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(tag->GetGroup());
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145
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diff changeset
146 if (found != privateCreators.end())
4020
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147 {
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148 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, found->second.c_str());
4020
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149 }
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150 else
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151 {
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
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152 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator);
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
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153 }
4011
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154 }
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diff changeset
155 else
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diff changeset
156 {
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157 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, "" /* no private creator */);
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158 }
1859
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159 }
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160 }
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161
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diff changeset
162 answers.Add(dicom);
1331
77e129ba64e4 Prevent freeze on C-FIND if no DICOM tag is to be returned
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163 }
608
0bedf8ff9288 basic find scp
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164 }
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165
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166
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167
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168 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */,
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169 ResourceType level,
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170 const DicomTag& tag,
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171 ModalityManufacturer manufacturer)
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172 {
2335
174c3616ab6d code review
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173 // Whatever the manufacturer, remove the GenericGroupLength tags
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174 // http://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.2.html
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175 // https://bugs.orthanc-server.com/show_bug.cgi?id=31
2434
63194107e61b fix issue 31 for good: removing group length correctly
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176 if (tag.GetElement() == 0x0000)
2317
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177 {
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178 return false;
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179 }
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180
1853
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181 switch (manufacturer)
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diff changeset
182 {
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diff changeset
183 case ModalityManufacturer_Vitrea:
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184 // Following Denis Nesterov's mail on 2015-11-30
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diff changeset
185 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4"
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diff changeset
186 {
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187 return false;
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diff changeset
188 }
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
189
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
190 break;
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diff changeset
191
b7d3d3b182cf two patches for manufacturers Efilm and Vitrea
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
192 default:
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193 break;
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diff changeset
194 }
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diff changeset
195
1851
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diff changeset
196 return true;
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
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diff changeset
197 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
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diff changeset
198
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
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diff changeset
199
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff changeset
200 bool OrthancFindRequestHandler::ApplyLuaFilter(DicomMap& target,
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diff changeset
201 const DicomMap& source,
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diff changeset
202 const std::string& remoteIp,
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diff changeset
203 const std::string& remoteAet,
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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diff changeset
204 const std::string& calledAet,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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diff changeset
205 ModalityManufacturer manufacturer)
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff changeset
206 {
2221
e7beca979562 fix Windows build due to overwriting a macro
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diff changeset
207 static const char* LUA_CALLBACK = "IncomingFindRequestFilter";
2616
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parents: 2612
diff changeset
208
2617
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diff changeset
209 LuaScripting::Lock lock(context_.GetLuaScripting());
912a767911b0 back to a single Lua context
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diff changeset
210
2616
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parents: 2612
diff changeset
211 if (!lock.GetLua().IsExistingFunction(LUA_CALLBACK))
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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diff changeset
212 {
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diff changeset
213 return false;
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diff changeset
214 }
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parents: 2208
diff changeset
215 else
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2208
diff changeset
216 {
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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parents: 2617
diff changeset
217 Json::Value origin;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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parents: 2617
diff changeset
218 FormatOrigin(origin, remoteIp, remoteAet, calledAet, manufacturer);
1888
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diff changeset
219
2616
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diff changeset
220 LuaFunctionCall call(lock.GetLua(), LUA_CALLBACK);
2218
3eefb84ac0bd dynamically fix outgoing C-Find requests using "OutgoingFindRequestFilter()"
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parents: 2208
diff changeset
221 call.PushDicom(source);
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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parents: 1859
diff changeset
222 call.PushJson(origin);
4105
c02a2d9efbc2 move FromDcmtkBridge::ExecuteToDicom() to LuaFunctionCall, to remove dependency of DCMTK on Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4055
diff changeset
223 call.ExecuteToDicom(target);
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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parents: 1859
diff changeset
224
2218
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diff changeset
225 return true;
1888
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diff changeset
226 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff changeset
227 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff changeset
228
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff changeset
229
2616
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diff changeset
230 OrthancFindRequestHandler::OrthancFindRequestHandler(ServerContext& context) :
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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diff changeset
231 context_(context),
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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diff changeset
232 maxResults_(0),
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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parents: 2612
diff changeset
233 maxInstances_(0)
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parents: 2612
diff changeset
234 {
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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diff changeset
235 }
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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parents: 2612
diff changeset
236
2f3007bf0708 event queues in Lua, serialization of sequence of operations
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diff changeset
237
3021
2cbafb5d5a62 renamed LookupResource::IVisitor as ServerContext::ILookupVisitor
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parents: 3015
diff changeset
238 class OrthancFindRequestHandler::LookupVisitor : public ServerContext::ILookupVisitor
3003
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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parents: 3001
diff changeset
239 {
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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parents: 3001
diff changeset
240 private:
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
241 DicomFindAnswers& answers_;
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3001
diff changeset
242 ServerContext& context_;
5ae3ff2398e9 refactoring OrthancFindRequestHandler using LookupResource::IVisitor
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parents: 3001
diff changeset
243 ResourceType level_;
3015
abe49ca61cd5 On C-FIND, avoid accessing the storage area whenever possible
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parents: 3012
diff changeset
244 const DicomMap& query_;
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245 DicomArray queryAsArray_;
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246 const std::list<DicomTag>& sequencesToReturn_;
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247 std::string defaultPrivateCreator_; // the private creator to use if the group is not defined in the query itself
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248 const std::map<uint16_t, std::string>& privateCreators_; // the private creators defined in the query itself
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249 std::string retrieveAet_;
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250 FindStorageAccessMode findStorageAccessMode_;
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251
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252 public:
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253 LookupVisitor(DicomFindAnswers& answers,
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254 ServerContext& context,
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255 ResourceType level,
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256 const DicomMap& query,
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257 const std::list<DicomTag>& sequencesToReturn,
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258 const std::map<uint16_t, std::string>& privateCreators,
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259 FindStorageAccessMode findStorageAccessMode) :
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260 answers_(answers),
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261 context_(context),
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262 level_(level),
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263 query_(query),
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264 queryAsArray_(query),
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265 sequencesToReturn_(sequencesToReturn),
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266 privateCreators_(privateCreators),
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267 findStorageAccessMode_(findStorageAccessMode)
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268 {
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269 answers_.SetComplete(false);
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270
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271 {
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272 OrthancConfiguration::ReaderLock lock;
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273 defaultPrivateCreator_ = lock.GetConfiguration().GetDefaultPrivateCreator();
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274 retrieveAet_ = lock.GetConfiguration().GetOrthancAET();
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275 }
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276 }
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277
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278 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE
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279 {
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280 // Ask the "DICOM-as-JSON" attachment only if sequences are to
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281 // be returned OR if "query_" contains non-main DICOM tags!
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282
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283 DicomMap withoutSpecialTags;
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284 withoutSpecialTags.Assign(query_);
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285
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286 // Check out "ComputeCounters()"
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287 withoutSpecialTags.Remove(DICOM_TAG_MODALITIES_IN_STUDY);
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288 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES);
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289 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES);
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290 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES);
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291 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES);
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292 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES);
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293 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES);
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294 withoutSpecialTags.Remove(DICOM_TAG_SOP_CLASSES_IN_STUDY);
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295
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296 // Check out "AddAnswer()"
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297 withoutSpecialTags.Remove(DICOM_TAG_SPECIFIC_CHARACTER_SET);
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298 withoutSpecialTags.Remove(DICOM_TAG_QUERY_RETRIEVE_LEVEL);
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299
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300 return (!sequencesToReturn_.empty() ||
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301 !withoutSpecialTags.HasOnlyMainDicomTags());
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302 }
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303
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304 virtual void MarkAsComplete() ORTHANC_OVERRIDE
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305 {
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306 answers_.SetComplete(true);
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307 }
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308
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309 virtual void Visit(const std::string& publicId,
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310 const std::string& instanceId,
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311 const DicomMap& mainDicomTags,
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312 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE
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313 {
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314 AddAnswer(answers_, context_, publicId, instanceId, mainDicomTags, dicomAsJson, level_, queryAsArray_, sequencesToReturn_,
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315 defaultPrivateCreator_, privateCreators_, retrieveAet_, IsStorageAccessAllowedForAnswers(findStorageAccessMode_));
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316 }
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317 };
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318
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319
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320 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers,
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321 const DicomMap& input,
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322 const std::list<DicomTag>& sequencesToReturn,
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323 const std::string& remoteIp,
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324 const std::string& remoteAet,
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325 const std::string& calledAet,
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326 ModalityManufacturer manufacturer)
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327 {
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328 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_find_scp_duration_ms");
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329
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330
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331 /**
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332 * Deal with global configuration
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333 **/
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334
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335 bool caseSensitivePN;
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336
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337 {
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338 OrthancConfiguration::ReaderLock lock;
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339 caseSensitivePN = lock.GetConfiguration().GetBooleanParameter("CaseSensitivePN", false);
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340
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341 RemoteModalityParameters remote;
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342 if (!lock.GetConfiguration().LookupDicomModalityUsingAETitle(remote, remoteAet))
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343 {
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344 if (lock.GetConfiguration().GetBooleanParameter("DicomAlwaysAllowFind", false))
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345 {
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346 CLOG(INFO, DICOM) << "C-FIND: Allowing SCU request from unknown modality with AET: " << remoteAet;
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347 }
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348 else
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349 {
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350 // This should never happen, given the test at bottom of
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351 // "OrthancApplicationEntityFilter::IsAllowedRequest()"
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352 throw OrthancException(ErrorCode_InexistentItem,
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353 "C-FIND: Rejecting SCU request from unknown modality with AET: " + remoteAet);
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354 }
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355 }
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356 }
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
357
8efeaba1b7f9 new configuration options: "DicomAlwaysAllowFind" and "DicomAlwaysAllowGet"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
358
8efeaba1b7f9 new configuration options: "DicomAlwaysAllowFind" and "DicomAlwaysAllowGet"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4476
diff changeset
359
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 /**
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
361 * Possibly apply the user-supplied Lua filter.
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
362 **/
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
363
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
364 DicomMap lua;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
365 const DicomMap* filteredInput = &input;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
366
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
367 if (ApplyLuaFilter(lua, input, remoteIp, remoteAet, calledAet, manufacturer))
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
368 {
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
369 filteredInput = &lua;
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
370 }
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
371
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
372
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
373 /**
565
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parents:
diff changeset
374 * Retrieve the query level.
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375 **/
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
377 assert(filteredInput != NULL);
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
378 const DicomValue* levelTmp = filteredInput->TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL);
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
379 if (levelTmp == NULL ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
380 levelTmp->IsNull() ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
381 levelTmp->IsBinary())
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
382 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
383 throw OrthancException(ErrorCode_BadRequest,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2940
diff changeset
384 "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)");
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
385 }
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1582
diff changeset
387 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str());
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
389 if (level != ResourceType_Patient &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
390 level != ResourceType_Study &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
391 level != ResourceType_Series &&
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
392 level != ResourceType_Instance)
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 {
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
394 throw OrthancException(ErrorCode_NotImplemented);
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
395 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
396
665
41b3e5ccb291 fix for medInria
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 656
diff changeset
397
1888
512b6e76f531 Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1859
diff changeset
398 DicomArray query(*filteredInput);
4287
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
399 CLOG(INFO, DICOM) << "DICOM C-Find request at level: " << EnumerationToString(level);
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
400
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
401 for (size_t i = 0; i < query.GetSize(); i++)
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
402 {
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
403 if (!query.GetElement(i).GetValue().IsNull())
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
404 {
4313
91554aecff9a removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4287
diff changeset
405 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format()
91554aecff9a removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4287
diff changeset
406 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i))
4376
b002f9abe802 review of changeset 4375:208029732d51
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4375
diff changeset
407 << " = " << context_.GetDeidentifiedContent(query.GetElement(i));
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
408 }
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 }
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
411 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin();
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
412 it != sequencesToReturn.end(); ++it)
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
413 {
4287
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
414 CLOG(INFO, DICOM) << " (" << it->Format()
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
415 << ") " << FromDcmtkBridge::GetTagName(*it, "")
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
416 << " : sequence tag whose content will be copied";
1859
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
417 }
4e7c318a3f69 C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1856
diff changeset
418
4020
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
419 // collect the private creators from the query itself
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
420 std::map<uint16_t, std::string> privateCreators;
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
421 for (size_t i = 0; i < query.GetSize(); i++)
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
422 {
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
423 const DicomElement& element = query.GetElement(i);
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
424 if (element.GetTag().IsPrivate() && element.GetTag().GetElement() == 0x10)
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
425 {
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
426 privateCreators[element.GetTag().GetGroup()] = element.GetValue().GetContent();
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
427 }
320cde762fd9 collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents: 4011
diff changeset
428 }
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
429
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
430 /**
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
431 * Build up the query object.
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
432 **/
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
433
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
434 DatabaseLookup lookup;
1759
e268412adcf1 removal of old implementation of search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
435
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
436 for (size_t i = 0; i < query.GetSize(); i++)
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
437 {
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
438 const DicomElement& element = query.GetElement(i);
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
439 const DicomTag tag = element.GetTag();
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
440
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
441 if (element.GetValue().IsNull() ||
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
442 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL ||
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
443 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET)
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
444 {
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
445 continue;
714
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
446 }
6a1dbba0cca7 new implementation of C-Find handler
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 690
diff changeset
447
2115
a657f7772e69 Handling of private tags/creators in the "Dictionary" configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2088
diff changeset
448 std::string value = element.GetValue().GetContent();
1429
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
449 if (value.size() == 0)
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
450 {
3163
cf91b6f22278 Fix issue #90 (C-Find shall match missing tags to null/empty string)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3095
diff changeset
451 // An empty string corresponds to an universal constraint, so we ignore it
1429
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
452 continue;
7366a0bdda6a attempt of fix for Syngo.Via
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1383
diff changeset
453 }
611
9924aec1d694 filtering on modalities
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 610
diff changeset
454
2256
de1ba22fd28a simplification wrt. modality manufacturers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
455 if (FilterQueryTag(value, level, tag, manufacturer))
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
456 {
2006
6301bbcbcaed more generic support of value representations
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
457 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag);
1758
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
458
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
459 // DICOM specifies that searches must be case sensitive, except
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
460 // for tags with a PN value representation
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
461 bool sensitive = true;
2007
655489d9165d DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2006
diff changeset
462 if (vr == ValueRepresentation_PersonName)
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
463 {
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
464 sensitive = caseSensitivePN;
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
465 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
466
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
467 lookup.AddDicomConstraint(tag, value, sensitive, true /* mandatory */);
1851
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
468 }
d364926389e0 OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
469 else
1758
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1757
diff changeset
470 {
4287
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
471 CLOG(INFO, DICOM) << "Because of a patch for the manufacturer of the remote modality, "
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
472 << "ignoring constraint on tag (" << tag.Format() << ") "
5a3374b6e707 using CLOG in Orthanc DICOM handlers
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4204
diff changeset
473 << FromDcmtkBridge::GetTagName(element);
1759
e268412adcf1 removal of old implementation of search
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1758
diff changeset
474 }
611
9924aec1d694 filtering on modalities
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 610
diff changeset
475 }
9924aec1d694 filtering on modalities
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 610
diff changeset
476
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
477
608
0bedf8ff9288 basic find scp
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 565
diff changeset
478 /**
1361
94ffb597d297 refactoring of C-Find SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1354
diff changeset
479 * Run the query.
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
480 **/
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
481
2876
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2827
diff changeset
482 size_t limit = (level == ResourceType_Instance) ? maxInstances_ : maxResults_;
941
83489fddd8c5 Options to limit the number of results for an incoming C-FIND query
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 831
diff changeset
483
3012
af1530b45290 Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3005
diff changeset
484
5058
d4e5ca0c9307 Fix the "Never" option of the "StorageAccessOnFind" that was sill accessing files (bug introduced in 1.11.0)
Alain Mazy <am@osimis.io>
parents: 4978
diff changeset
485 LookupVisitor visitor(answers, context_, level, *filteredInput, sequencesToReturn, privateCreators, context_.GetFindStorageAccessMode());
3033
5da6d1063d8f effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3025
diff changeset
486 context_.Apply(visitor, lookup, level, 0 /* "since" is not relevant to C-FIND */, limit);
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
487 }
2827
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
488
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
489
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
490 void OrthancFindRequestHandler::FormatOrigin(Json::Value& origin,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
491 const std::string& remoteIp,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
492 const std::string& remoteAet,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
493 const std::string& calledAet,
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
494 ModalityManufacturer manufacturer)
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
495 {
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
496 origin = Json::objectValue;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
497 origin["RemoteIp"] = remoteIp;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
498 origin["RemoteAet"] = remoteAet;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
499 origin["CalledAet"] = calledAet;
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
500 origin["Manufacturer"] = EnumerationToString(manufacturer);
d4fd4614f275 IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2617
diff changeset
501 }
565
c931ac02db82 refactoring of find class
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
502 }