Mercurial > hg > orthanc
annotate Core/DicomParsing/ParsedDicomFile.h @ 3011:8a15bb3576c2
make "/tools/create-dicom" more tolerant to invalid specific character set
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 13 Dec 2018 17:17:51 +0100 |
parents | 9d277f8ad698 |
children | 4e43e67f8ecf |
rev | line source |
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790 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
790 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 #pragma once | |
35 | |
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36 #if !defined(ORTHANC_ENABLE_JPEG) |
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37 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file |
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38 #endif |
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39 |
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40 #if !defined(ORTHANC_ENABLE_PNG) |
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41 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file |
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42 #endif |
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43 |
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44 #if !defined(ORTHANC_ENABLE_CIVETWEB) |
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45 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file |
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46 #endif |
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47 |
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48 #if !defined(ORTHANC_ENABLE_MONGOOSE) |
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49 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file |
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50 #endif |
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51 |
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52 #if !defined(ORTHANC_SANDBOXED) |
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53 # error The macro ORTHANC_SANDBOXED must be defined |
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54 #endif |
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55 |
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56 #include "ITagVisitor.h" |
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57 #include "../DicomFormat/DicomInstanceHasher.h" |
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58 #include "../Images/ImageAccessor.h" |
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59 #include "../IDynamicObject.h" |
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60 #include "../Toolbox.h" |
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61 |
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62 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
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63 # include "../RestApi/RestApiOutput.h" |
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64 #endif |
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65 |
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66 #include <boost/shared_ptr.hpp> |
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67 |
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68 |
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69 class DcmDataset; |
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70 class DcmFileFormat; |
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71 |
790 | 72 namespace Orthanc |
73 { | |
74 class ParsedDicomFile : public IDynamicObject | |
75 { | |
76 private: | |
794 | 77 struct PImpl; |
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78 boost::shared_ptr<PImpl> pimpl_; |
790 | 79 |
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80 ParsedDicomFile(ParsedDicomFile& other, |
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81 bool keepSopInstanceUid); |
790 | 82 |
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83 void CreateFromDicomMap(const DicomMap& source, |
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84 Encoding defaultEncoding); |
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85 |
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86 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep); |
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87 |
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88 void UpdateStorageUid(const DicomTag& tag, |
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89 const std::string& value, |
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90 bool decodeDataUriScheme); |
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91 |
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92 void InvalidateCache(); |
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93 |
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94 bool EmbedContentInternal(const std::string& dataUriScheme); |
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95 |
790 | 96 public: |
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97 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance |
790 | 98 |
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99 ParsedDicomFile(const DicomMap& map, |
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100 Encoding defaultEncoding); |
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101 |
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102 ParsedDicomFile(const DicomMap& map); |
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103 |
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104 ParsedDicomFile(const void* content, |
791 | 105 size_t size); |
790 | 106 |
791 | 107 ParsedDicomFile(const std::string& content); |
790 | 108 |
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109 ParsedDicomFile(DcmDataset& dicom); |
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110 |
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111 ParsedDicomFile(DcmFileFormat& dicom); |
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112 |
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113 DcmFileFormat& GetDcmtkObject() const; |
790 | 114 |
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115 ParsedDicomFile* Clone(bool keepSopInstanceUid); |
790 | 116 |
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117 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1 |
790 | 118 void SendPathValue(RestApiOutput& output, |
119 const UriComponents& uri); | |
120 | |
121 void Answer(RestApiOutput& output); | |
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122 #endif |
790 | 123 |
124 void Remove(const DicomTag& tag); | |
125 | |
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126 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization) |
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DicomModification::Clear()
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127 void Clear(const DicomTag& tag, |
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128 bool onlyIfExists); |
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129 |
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130 void Replace(const DicomTag& tag, |
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131 const std::string& utf8Value, |
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132 bool decodeDataUriScheme, |
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133 DicomReplaceMode mode); |
1695 | 134 |
135 void Replace(const DicomTag& tag, | |
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136 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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137 bool decodeDataUriScheme, |
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138 DicomReplaceMode mode); |
790 | 139 |
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140 void Insert(const DicomTag& tag, |
1695 | 141 const Json::Value& value, // Assumed to be encoded with UTF-8 |
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142 bool decodeDataUriScheme); |
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143 |
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144 void ReplacePlainString(const DicomTag& tag, |
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145 const std::string& utf8Value) |
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146 { |
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147 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent); |
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148 } |
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149 |
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150 void SetIfAbsent(const DicomTag& tag, |
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151 const std::string& utf8Value) |
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152 { |
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153 std::string currentValue; |
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154 if (!GetTagValue(currentValue, tag)) |
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155 { |
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156 ReplacePlainString(tag, utf8Value); |
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157 } |
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158 } |
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159 |
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160 void RemovePrivateTags() |
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161 { |
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162 RemovePrivateTagsInternal(NULL); |
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163 } |
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164 |
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165 void RemovePrivateTags(const std::set<DicomTag>& toKeep) |
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166 { |
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167 RemovePrivateTagsInternal(&toKeep); |
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168 } |
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170 // WARNING: This function handles the decoding of strings to UTF8 |
790 | 171 bool GetTagValue(std::string& value, |
172 const DicomTag& tag); | |
173 | |
174 DicomInstanceHasher GetHasher(); | |
175 | |
176 void SaveToMemoryBuffer(std::string& buffer); | |
177 | |
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178 #if ORTHANC_SANDBOXED == 0 |
790 | 179 void SaveToFile(const std::string& path); |
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180 #endif |
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181 |
1562 | 182 void EmbedContent(const std::string& dataUriScheme); |
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183 |
1562 | 184 void EmbedImage(const ImageAccessor& accessor); |
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185 |
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186 void EmbedImage(MimeType mime, |
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187 const std::string& content); |
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188 |
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189 Encoding GetEncoding() const; |
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190 |
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191 // WARNING: This function only sets the encoding, it will not |
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192 // convert the encoding of the tags. Use "ChangeEncoding()" if need be. |
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193 void SetEncoding(Encoding encoding); |
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194 |
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195 void DatasetToJson(Json::Value& target, |
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196 DicomToJsonFormat format, |
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197 DicomToJsonFlags flags, |
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198 unsigned int maxStringLength); |
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199 |
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200 void DatasetToJson(Json::Value& target, |
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201 DicomToJsonFormat format, |
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202 DicomToJsonFlags flags, |
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203 unsigned int maxStringLength, |
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204 const std::set<DicomTag>& ignoreTagLength); |
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205 |
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206 // This version uses the default parameters for |
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207 // FileContentType_DicomAsJson |
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208 void DatasetToJson(Json::Value& target, |
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209 const std::set<DicomTag>& ignoreTagLength); |
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210 |
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211 void DatasetToJson(Json::Value& target); |
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212 |
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213 void HeaderToJson(Json::Value& target, |
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214 DicomToJsonFormat format); |
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215 |
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216 bool HasTag(const DicomTag& tag) const; |
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217 |
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218 void EmbedPdf(const std::string& pdf); |
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219 |
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220 bool ExtractPdf(std::string& pdf); |
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221 |
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222 void GetRawFrame(std::string& target, // OUT |
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223 MimeType& mime, // OUT |
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224 unsigned int frameId); // IN |
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225 |
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226 unsigned int GetFramesCount() const; |
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227 |
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228 static ParsedDicomFile* CreateFromJson(const Json::Value& value, |
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229 DicomFromJsonFlags flags); |
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230 |
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231 void ChangeEncoding(Encoding target); |
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232 |
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233 void ExtractDicomSummary(DicomMap& target) const; |
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234 |
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235 bool LookupTransferSyntax(std::string& result); |
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236 |
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237 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const; |
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238 |
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239 void Apply(ITagVisitor& visitor); |
790 | 240 }; |
241 } |