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annotate Core/DicomFormat/DicomMap.cpp @ 2771:87a3a8c04d8a worklists
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| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 17 Jul 2018 09:45:17 +0200 |
| parents | 39c37a994b2f |
| children | 5d8134e54c03 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 59 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "../PrecompiledHeaders.h" |
| 0 | 34 #include "DicomMap.h" |
| 35 | |
| 36 #include <stdio.h> | |
| 37 #include <memory> | |
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38 #include "DicomArray.h" |
| 59 | 39 #include "../OrthancException.h" |
| 0 | 40 |
| 41 | |
| 59 | 42 namespace Orthanc |
| 0 | 43 { |
| 44 static DicomTag patientTags[] = | |
| 45 { | |
| 38 | 46 //DicomTag(0x0010, 0x1010), // PatientAge |
| 47 //DicomTag(0x0010, 0x1040) // PatientAddress | |
| 77 | 48 DicomTag(0x0010, 0x0010), // PatientName |
| 49 DicomTag(0x0010, 0x0030), // PatientBirthDate | |
| 50 DicomTag(0x0010, 0x0040), // PatientSex | |
| 51 DicomTag(0x0010, 0x1000), // OtherPatientIDs | |
| 80 | 52 DICOM_TAG_PATIENT_ID |
| 0 | 53 }; |
| 54 | |
| 55 static DicomTag studyTags[] = | |
| 56 { | |
| 38 | 57 //DicomTag(0x0010, 0x1020), // PatientSize |
| 58 //DicomTag(0x0010, 0x1030) // PatientWeight | |
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59 DICOM_TAG_STUDY_DATE, |
| 77 | 60 DicomTag(0x0008, 0x0030), // StudyTime |
| 61 DicomTag(0x0020, 0x0010), // StudyID | |
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62 DICOM_TAG_STUDY_DESCRIPTION, |
| 80 | 63 DICOM_TAG_ACCESSION_NUMBER, |
| 64 DICOM_TAG_STUDY_INSTANCE_UID | |
| 0 | 65 }; |
| 66 | |
| 67 static DicomTag seriesTags[] = | |
| 68 { | |
| 38 | 69 //DicomTag(0x0010, 0x1080), // MilitaryRank |
| 77 | 70 DicomTag(0x0008, 0x0021), // SeriesDate |
| 71 DicomTag(0x0008, 0x0031), // SeriesTime | |
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72 DICOM_TAG_MODALITY, |
| 77 | 73 DicomTag(0x0008, 0x0070), // Manufacturer |
| 74 DicomTag(0x0008, 0x1010), // StationName | |
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75 DICOM_TAG_SERIES_DESCRIPTION, |
| 77 | 76 DicomTag(0x0018, 0x0015), // BodyPartExamined |
| 77 DicomTag(0x0018, 0x0024), // SequenceName | |
| 78 DicomTag(0x0018, 0x1030), // ProtocolName | |
| 79 DicomTag(0x0020, 0x0011), // SeriesNumber | |
| 433 | 80 DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES, |
| 80 | 81 DICOM_TAG_IMAGES_IN_ACQUISITION, |
| 433 | 82 DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, |
| 80 | 83 DICOM_TAG_NUMBER_OF_SLICES, |
| 433 | 84 DICOM_TAG_NUMBER_OF_TIME_SLICES, |
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85 DICOM_TAG_SERIES_INSTANCE_UID, |
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86 DICOM_TAG_IMAGE_ORIENTATION_PATIENT // New in db v6 |
| 0 | 87 }; |
| 88 | |
| 89 static DicomTag instanceTags[] = | |
| 90 { | |
| 77 | 91 DicomTag(0x0008, 0x0012), // InstanceCreationDate |
| 92 DicomTag(0x0008, 0x0013), // InstanceCreationTime | |
| 93 DicomTag(0x0020, 0x0012), // AcquisitionNumber | |
| 80 | 94 DICOM_TAG_IMAGE_INDEX, |
| 95 DICOM_TAG_INSTANCE_NUMBER, | |
| 84 | 96 DICOM_TAG_NUMBER_OF_FRAMES, |
| 433 | 97 DICOM_TAG_TEMPORAL_POSITION_IDENTIFIER, |
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98 DICOM_TAG_SOP_INSTANCE_UID, |
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99 DICOM_TAG_IMAGE_POSITION_PATIENT // New in db v6 |
| 0 | 100 }; |
| 101 | |
| 102 | |
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103 void DicomMap::LoadMainDicomTags(const DicomTag*& tags, |
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104 size_t& size, |
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105 ResourceType level) |
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106 { |
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107 switch (level) |
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108 { |
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109 case ResourceType_Patient: |
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110 tags = patientTags; |
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111 size = sizeof(patientTags) / sizeof(DicomTag); |
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112 break; |
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113 |
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114 case ResourceType_Study: |
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115 tags = studyTags; |
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116 size = sizeof(studyTags) / sizeof(DicomTag); |
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117 break; |
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118 |
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119 case ResourceType_Series: |
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120 tags = seriesTags; |
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121 size = sizeof(seriesTags) / sizeof(DicomTag); |
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122 break; |
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123 |
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124 case ResourceType_Instance: |
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125 tags = instanceTags; |
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126 size = sizeof(instanceTags) / sizeof(DicomTag); |
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127 break; |
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128 |
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129 default: |
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130 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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131 } |
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132 } |
| 0 | 133 |
| 134 | |
| 135 void DicomMap::SetValue(uint16_t group, | |
| 136 uint16_t element, | |
| 137 DicomValue* value) | |
| 138 { | |
| 139 DicomTag tag(group, element); | |
| 140 Map::iterator it = map_.find(tag); | |
| 141 | |
| 142 if (it != map_.end()) | |
| 143 { | |
| 144 delete it->second; | |
| 145 it->second = value; | |
| 146 } | |
| 147 else | |
| 148 { | |
| 149 map_.insert(std::make_pair(tag, value)); | |
| 150 } | |
| 151 } | |
| 152 | |
| 153 void DicomMap::SetValue(DicomTag tag, | |
| 154 DicomValue* value) | |
| 155 { | |
| 156 SetValue(tag.GetGroup(), tag.GetElement(), value); | |
| 157 } | |
| 158 | |
| 159 | |
| 160 | |
| 161 | |
| 162 void DicomMap::Clear() | |
| 163 { | |
| 656 | 164 for (Map::iterator it = map_.begin(); it != map_.end(); ++it) |
| 0 | 165 { |
| 166 delete it->second; | |
| 167 } | |
| 168 | |
| 169 map_.clear(); | |
| 170 } | |
| 171 | |
| 172 | |
| 173 void DicomMap::ExtractTags(DicomMap& result, | |
| 174 const DicomTag* tags, | |
| 175 size_t count) const | |
| 176 { | |
| 177 result.Clear(); | |
| 178 | |
| 179 for (unsigned int i = 0; i < count; i++) | |
| 180 { | |
| 181 Map::const_iterator it = map_.find(tags[i]); | |
| 182 if (it != map_.end()) | |
| 183 { | |
| 184 result.SetValue(it->first, it->second->Clone()); | |
| 185 } | |
| 186 } | |
| 187 } | |
| 188 | |
| 189 | |
| 190 void DicomMap::ExtractPatientInformation(DicomMap& result) const | |
| 191 { | |
| 192 ExtractTags(result, patientTags, sizeof(patientTags) / sizeof(DicomTag)); | |
| 193 } | |
| 194 | |
| 195 void DicomMap::ExtractStudyInformation(DicomMap& result) const | |
| 196 { | |
| 197 ExtractTags(result, studyTags, sizeof(studyTags) / sizeof(DicomTag)); | |
| 198 } | |
| 199 | |
| 200 void DicomMap::ExtractSeriesInformation(DicomMap& result) const | |
| 201 { | |
| 202 ExtractTags(result, seriesTags, sizeof(seriesTags) / sizeof(DicomTag)); | |
| 203 } | |
| 204 | |
| 205 void DicomMap::ExtractInstanceInformation(DicomMap& result) const | |
| 206 { | |
| 207 ExtractTags(result, instanceTags, sizeof(instanceTags) / sizeof(DicomTag)); | |
| 208 } | |
| 209 | |
| 210 | |
| 80 | 211 |
| 0 | 212 DicomMap* DicomMap::Clone() const |
| 213 { | |
| 214 std::auto_ptr<DicomMap> result(new DicomMap); | |
| 215 | |
| 656 | 216 for (Map::const_iterator it = map_.begin(); it != map_.end(); ++it) |
| 0 | 217 { |
| 218 result->map_.insert(std::make_pair(it->first, it->second->Clone())); | |
| 219 } | |
| 220 | |
| 221 return result.release(); | |
| 222 } | |
| 223 | |
| 224 | |
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225 void DicomMap::Assign(const DicomMap& other) |
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226 { |
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227 Clear(); |
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228 |
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229 for (Map::const_iterator it = other.map_.begin(); it != other.map_.end(); ++it) |
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230 { |
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231 map_.insert(std::make_pair(it->first, it->second->Clone())); |
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232 } |
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233 } |
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234 |
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235 |
| 0 | 236 const DicomValue& DicomMap::GetValue(const DicomTag& tag) const |
| 237 { | |
| 80 | 238 const DicomValue* value = TestAndGetValue(tag); |
| 239 | |
| 240 if (value) | |
| 241 { | |
| 242 return *value; | |
| 243 } | |
| 244 else | |
| 245 { | |
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246 throw OrthancException(ErrorCode_InexistentTag); |
| 80 | 247 } |
| 248 } | |
| 249 | |
| 250 | |
| 251 const DicomValue* DicomMap::TestAndGetValue(const DicomTag& tag) const | |
| 252 { | |
| 0 | 253 Map::const_iterator it = map_.find(tag); |
| 254 | |
| 255 if (it == map_.end()) | |
| 256 { | |
| 80 | 257 return NULL; |
| 0 | 258 } |
| 259 else | |
| 260 { | |
| 80 | 261 return it->second; |
| 0 | 262 } |
| 263 } | |
| 264 | |
| 265 | |
| 266 void DicomMap::Remove(const DicomTag& tag) | |
| 267 { | |
| 268 Map::iterator it = map_.find(tag); | |
| 269 if (it != map_.end()) | |
| 270 { | |
| 271 delete it->second; | |
| 272 map_.erase(it); | |
| 273 } | |
| 274 } | |
| 275 | |
| 276 | |
| 277 static void SetupFindTemplate(DicomMap& result, | |
| 278 const DicomTag* tags, | |
| 279 size_t count) | |
| 280 { | |
| 281 result.Clear(); | |
| 282 | |
| 283 for (size_t i = 0; i < count; i++) | |
| 284 { | |
| 285 result.SetValue(tags[i], ""); | |
| 286 } | |
| 287 } | |
| 288 | |
| 289 void DicomMap::SetupFindPatientTemplate(DicomMap& result) | |
| 290 { | |
| 291 SetupFindTemplate(result, patientTags, sizeof(patientTags) / sizeof(DicomTag)); | |
| 292 } | |
| 293 | |
| 294 void DicomMap::SetupFindStudyTemplate(DicomMap& result) | |
| 295 { | |
| 296 SetupFindTemplate(result, studyTags, sizeof(studyTags) / sizeof(DicomTag)); | |
| 80 | 297 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 298 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 0 | 299 } |
| 300 | |
| 301 void DicomMap::SetupFindSeriesTemplate(DicomMap& result) | |
| 302 { | |
| 303 SetupFindTemplate(result, seriesTags, sizeof(seriesTags) / sizeof(DicomTag)); | |
| 80 | 304 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 305 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 306 result.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, ""); | |
| 1372 | 307 |
| 308 // These tags are considered as "main" by Orthanc, but are not in the Series module | |
| 309 result.Remove(DicomTag(0x0008, 0x0070)); // Manufacturer | |
| 310 result.Remove(DicomTag(0x0008, 0x1010)); // Station name | |
| 311 result.Remove(DicomTag(0x0018, 0x0024)); // Sequence name | |
| 312 result.Remove(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES); | |
| 313 result.Remove(DICOM_TAG_IMAGES_IN_ACQUISITION); | |
| 314 result.Remove(DICOM_TAG_NUMBER_OF_SLICES); | |
| 315 result.Remove(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS); | |
| 316 result.Remove(DICOM_TAG_NUMBER_OF_TIME_SLICES); | |
| 1706 | 317 result.Remove(DICOM_TAG_IMAGE_ORIENTATION_PATIENT); |
| 0 | 318 } |
| 319 | |
| 320 void DicomMap::SetupFindInstanceTemplate(DicomMap& result) | |
| 321 { | |
| 322 SetupFindTemplate(result, instanceTags, sizeof(instanceTags) / sizeof(DicomTag)); | |
| 80 | 323 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 324 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 325 result.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, ""); | |
| 326 result.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, ""); | |
| 0 | 327 } |
| 328 | |
| 329 | |
| 330 void DicomMap::CopyTagIfExists(const DicomMap& source, | |
| 331 const DicomTag& tag) | |
| 332 { | |
| 333 if (source.HasTag(tag)) | |
| 334 { | |
| 335 SetValue(tag, source.GetValue(tag)); | |
| 336 } | |
| 337 } | |
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338 |
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339 |
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340 bool DicomMap::IsMainDicomTag(const DicomTag& tag, ResourceType level) |
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341 { |
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342 DicomTag *tags = NULL; |
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343 size_t size; |
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344 |
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345 switch (level) |
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346 { |
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347 case ResourceType_Patient: |
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348 tags = patientTags; |
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349 size = sizeof(patientTags) / sizeof(DicomTag); |
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350 break; |
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351 |
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352 case ResourceType_Study: |
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353 tags = studyTags; |
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354 size = sizeof(studyTags) / sizeof(DicomTag); |
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355 break; |
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356 |
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357 case ResourceType_Series: |
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358 tags = seriesTags; |
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359 size = sizeof(seriesTags) / sizeof(DicomTag); |
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360 break; |
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361 |
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362 case ResourceType_Instance: |
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363 tags = instanceTags; |
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364 size = sizeof(instanceTags) / sizeof(DicomTag); |
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365 break; |
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366 |
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367 default: |
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368 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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369 } |
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370 |
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371 for (size_t i = 0; i < size; i++) |
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372 { |
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373 if (tags[i] == tag) |
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374 { |
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375 return true; |
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376 } |
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377 } |
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378 |
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379 return false; |
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380 } |
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381 |
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382 bool DicomMap::IsMainDicomTag(const DicomTag& tag) |
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383 { |
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384 return (IsMainDicomTag(tag, ResourceType_Patient) || |
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385 IsMainDicomTag(tag, ResourceType_Study) || |
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386 IsMainDicomTag(tag, ResourceType_Series) || |
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387 IsMainDicomTag(tag, ResourceType_Instance)); |
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388 } |
| 567 | 389 |
| 390 | |
| 391 void DicomMap::GetMainDicomTagsInternal(std::set<DicomTag>& result, ResourceType level) | |
| 392 { | |
| 393 DicomTag *tags = NULL; | |
| 394 size_t size; | |
| 395 | |
| 396 switch (level) | |
| 397 { | |
| 398 case ResourceType_Patient: | |
| 399 tags = patientTags; | |
| 400 size = sizeof(patientTags) / sizeof(DicomTag); | |
| 401 break; | |
| 402 | |
| 403 case ResourceType_Study: | |
| 404 tags = studyTags; | |
| 405 size = sizeof(studyTags) / sizeof(DicomTag); | |
| 406 break; | |
| 407 | |
| 408 case ResourceType_Series: | |
| 409 tags = seriesTags; | |
| 410 size = sizeof(seriesTags) / sizeof(DicomTag); | |
| 411 break; | |
| 412 | |
| 413 case ResourceType_Instance: | |
| 414 tags = instanceTags; | |
| 415 size = sizeof(instanceTags) / sizeof(DicomTag); | |
| 416 break; | |
| 417 | |
| 418 default: | |
| 419 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 420 } | |
| 421 | |
| 422 for (size_t i = 0; i < size; i++) | |
| 423 { | |
| 424 result.insert(tags[i]); | |
| 425 } | |
| 426 } | |
| 427 | |
| 428 | |
| 429 void DicomMap::GetMainDicomTags(std::set<DicomTag>& result, ResourceType level) | |
| 430 { | |
| 431 result.clear(); | |
| 432 GetMainDicomTagsInternal(result, level); | |
| 433 } | |
| 434 | |
| 435 | |
| 436 void DicomMap::GetMainDicomTags(std::set<DicomTag>& result) | |
| 437 { | |
| 438 result.clear(); | |
| 439 GetMainDicomTagsInternal(result, ResourceType_Patient); | |
| 440 GetMainDicomTagsInternal(result, ResourceType_Study); | |
| 441 GetMainDicomTagsInternal(result, ResourceType_Series); | |
| 442 GetMainDicomTagsInternal(result, ResourceType_Instance); | |
| 443 } | |
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444 |
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445 |
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446 void DicomMap::Print(FILE* fp) const |
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447 { |
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448 DicomArray a(*this); |
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449 a.Print(fp); |
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450 } |
| 1360 | 451 |
| 452 | |
| 453 void DicomMap::GetTags(std::set<DicomTag>& tags) const | |
| 454 { | |
| 455 tags.clear(); | |
| 456 | |
| 457 for (Map::const_iterator it = map_.begin(); | |
| 458 it != map_.end(); ++it) | |
| 459 { | |
| 460 tags.insert(it->first); | |
| 461 } | |
| 462 } | |
| 0 | 463 } |