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annotate OrthancServer/DatabaseWrapper.h @ 2312:8700dcaa02e5 issue-46-anonymization

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GenerateAnonymizationProfile.py
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 12 Jul 2017 16:44:33 +0200
parents a3a65de1840f
children 878b59270859
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "IDatabaseWrapper.h"
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37
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38 #include "../Core/SQLite/Connection.h"
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39 #include "../Core/SQLite/Transaction.h"
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40 #include "DatabaseWrapperBase.h"
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41
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42 namespace Orthanc
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43 {
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44 namespace Internals
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45 {
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46 class SignalRemainingAncestor;
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47 }
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48
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49 /**
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50 * This class manages an instance of the Orthanc SQLite database. It
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51 * translates low-level requests into SQL statements. Mutual
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52 * exclusion MUST be implemented at a higher level.
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53 **/
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54 class DatabaseWrapper : public IDatabaseWrapper
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55 {
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56 private:
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57 IDatabaseListener* listener_;
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58 SQLite::Connection db_;
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59 DatabaseWrapperBase base_;
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60 Internals::SignalRemainingAncestor* signalRemainingAncestor_;
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61 unsigned int version_;
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62
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63 void ClearTable(const std::string& tableName);
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64
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65 public:
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66 DatabaseWrapper(const std::string& path);
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67
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68 DatabaseWrapper();
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69
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70 virtual void Open();
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71
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72 virtual void Close()
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73 {
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74 db_.Close();
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75 }
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76
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77 virtual void SetListener(IDatabaseListener& listener);
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78
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79 virtual void SetGlobalProperty(GlobalProperty property,
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80 const std::string& value)
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81 {
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82 base_.SetGlobalProperty(property, value);
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83 }
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84
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85 virtual bool LookupGlobalProperty(std::string& target,
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86 GlobalProperty property)
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87 {
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88 return base_.LookupGlobalProperty(target, property);
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89 }
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90
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91 virtual int64_t CreateResource(const std::string& publicId,
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92 ResourceType type)
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93 {
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94 return base_.CreateResource(publicId, type);
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95 }
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96
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97 virtual bool LookupResource(int64_t& id,
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98 ResourceType& type,
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99 const std::string& publicId)
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100 {
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101 return base_.LookupResource(id, type, publicId);
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102 }
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103
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104 virtual bool LookupParent(int64_t& parentId,
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105 int64_t resourceId);
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106
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107 virtual std::string GetPublicId(int64_t resourceId);
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108
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109 virtual ResourceType GetResourceType(int64_t resourceId);
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110
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111 virtual void AttachChild(int64_t parent,
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112 int64_t child)
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113 {
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114 base_.AttachChild(parent, child);
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115 }
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116
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117 virtual void DeleteResource(int64_t id);
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118
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119 virtual void SetMetadata(int64_t id,
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120 MetadataType type,
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121 const std::string& value)
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122 {
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123 base_.SetMetadata(id, type, value);
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124 }
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125
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126 virtual void DeleteMetadata(int64_t id,
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127 MetadataType type)
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128 {
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129 base_.DeleteMetadata(id, type);
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130 }
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131
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132 virtual bool LookupMetadata(std::string& target,
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133 int64_t id,
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134 MetadataType type)
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135 {
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136 return base_.LookupMetadata(target, id, type);
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137 }
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138
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139 virtual void ListAvailableMetadata(std::list<MetadataType>& target,
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140 int64_t id)
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141 {
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142 base_.ListAvailableMetadata(target, id);
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143 }
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144
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145 virtual void AddAttachment(int64_t id,
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146 const FileInfo& attachment)
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147 {
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148 base_.AddAttachment(id, attachment);
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149 }
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150
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151 virtual void DeleteAttachment(int64_t id,
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152 FileContentType attachment)
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153 {
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154 base_.DeleteAttachment(id, attachment);
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155 }
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156
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157 virtual void ListAvailableAttachments(std::list<FileContentType>& target,
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158 int64_t id)
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159 {
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160 return base_.ListAvailableAttachments(target, id);
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161 }
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162
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163 virtual bool LookupAttachment(FileInfo& attachment,
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164 int64_t id,
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165 FileContentType contentType)
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166 {
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167 return base_.LookupAttachment(attachment, id, contentType);
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168 }
183
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169
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170 virtual void ClearMainDicomTags(int64_t id)
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171 {
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172 base_.ClearMainDicomTags(id);
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173 }
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174
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175 virtual void SetMainDicomTag(int64_t id,
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176 const DicomTag& tag,
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177 const std::string& value)
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178 {
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179 base_.SetMainDicomTag(id, tag, value);
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180 }
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181
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182 virtual void SetIdentifierTag(int64_t id,
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183 const DicomTag& tag,
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184 const std::string& value)
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185 {
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186 base_.SetIdentifierTag(id, tag, value);
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187 }
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188
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189 virtual void GetMainDicomTags(DicomMap& map,
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190 int64_t id)
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191 {
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192 base_.GetMainDicomTags(map, id);
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193 }
440
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194
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195 virtual void GetChildrenPublicId(std::list<std::string>& target,
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196 int64_t id)
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197 {
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198 base_.GetChildrenPublicId(target, id);
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199 }
200
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200
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201 virtual void GetChildrenInternalId(std::list<int64_t>& target,
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202 int64_t id)
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203 {
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204 base_.GetChildrenInternalId(target, id);
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205 }
183
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206
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207 virtual void LogChange(int64_t internalId,
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208 const ServerIndexChange& change)
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209 {
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210 base_.LogChange(internalId, change);
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211 }
183
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212
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213 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/,
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214 bool& done /*out*/,
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215 int64_t since,
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216 uint32_t maxResults);
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217
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218 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/);
204
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219
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220 virtual void LogExportedResource(const ExportedResource& resource)
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221 {
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222 base_.LogExportedResource(resource);
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223 }
183
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224
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225 virtual void GetExportedResources(std::list<ExportedResource>& target /*out*/,
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226 bool& done /*out*/,
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227 int64_t since,
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228 uint32_t maxResults)
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229 {
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230 base_.GetExportedResources(target, done, since, maxResults);
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231 }
237
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232
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233 virtual void GetLastExportedResource(std::list<ExportedResource>& target /*out*/)
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234 {
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235 base_.GetLastExportedResource(target);
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236 }
183
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237
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238 virtual uint64_t GetTotalCompressedSize()
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239 {
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240 return base_.GetTotalCompressedSize();
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241 }
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242
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243 virtual uint64_t GetTotalUncompressedSize()
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244 {
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245 return base_.GetTotalUncompressedSize();
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246 }
238
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247
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248 virtual uint64_t GetResourceCount(ResourceType resourceType)
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249 {
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250 return base_.GetResourceCount(resourceType);
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251 }
190
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252
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253 virtual void GetAllInternalIds(std::list<int64_t>& target,
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254 ResourceType resourceType)
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255 {
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256 base_.GetAllInternalIds(target, resourceType);
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257 }
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258
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259 virtual void GetAllPublicIds(std::list<std::string>& target,
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260 ResourceType resourceType)
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261 {
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262 base_.GetAllPublicIds(target, resourceType);
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263 }
262
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264
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265 virtual void GetAllPublicIds(std::list<std::string>& target,
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266 ResourceType resourceType,
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267 size_t since,
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268 size_t limit)
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269 {
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270 base_.GetAllPublicIds(target, resourceType, since, limit);
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271 }
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272
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273 virtual bool SelectPatientToRecycle(int64_t& internalId)
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274 {
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275 return base_.SelectPatientToRecycle(internalId);
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276 }
262
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277
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278 virtual bool SelectPatientToRecycle(int64_t& internalId,
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279 int64_t patientIdToAvoid)
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280 {
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281 return base_.SelectPatientToRecycle(internalId, patientIdToAvoid);
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282 }
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283
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284 virtual bool IsProtectedPatient(int64_t internalId)
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285 {
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286 return base_.IsProtectedPatient(internalId);
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287 }
262
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288
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289 virtual void SetProtectedPatient(int64_t internalId,
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290 bool isProtected)
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291 {
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292 base_.SetProtectedPatient(internalId, isProtected);
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293 }
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294
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295 virtual SQLite::ITransaction* StartTransaction()
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296 {
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297 return new SQLite::Transaction(db_);
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298 }
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299
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300 virtual void FlushToDisk()
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301 {
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302 db_.FlushToDisk();
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303 }
310
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304
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305 virtual bool HasFlushToDisk() const
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306 {
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307 return true;
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308 }
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309
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310 virtual void ClearChanges()
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311 {
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312 ClearTable("Changes");
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313 }
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314
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315 virtual void ClearExportedResources()
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316 {
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317 ClearTable("ExportedResources");
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318 }
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319
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320 virtual bool IsExistingResource(int64_t internalId)
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321 {
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322 return base_.IsExistingResource(internalId);
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323 }
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324
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325 virtual void LookupIdentifier(std::list<int64_t>& result,
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326 ResourceType level,
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327 const DicomTag& tag,
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328 IdentifierConstraintType type,
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329 const std::string& value)
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330 {
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331 base_.LookupIdentifier(result, level, tag, type, value);
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332 }
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333
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334 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target,
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335 int64_t id);
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336
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337 virtual unsigned int GetDatabaseVersion()
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338 {
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339 return version_;
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340 }
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341
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342 virtual void Upgrade(unsigned int targetVersion,
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343 IStorageArea& storageArea);
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344
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345
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346
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347 /**
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348 * The methods declared below are for unit testing only!
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349 **/
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350
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351 const char* GetErrorMessage() const
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352 {
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353 return db_.GetErrorMessage();
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354 }
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355
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356 void GetChildren(std::list<std::string>& childrenPublicIds,
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357 int64_t id);
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358
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359 int64_t GetTableRecordCount(const std::string& table);
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360
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361 bool GetParentPublicId(std::string& target,
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362 int64_t id);
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363
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364 };
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365 }