Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancFindRequestHandler.cpp @ 4936:8422e4f99a18 more-tags
Handling RequestedTags in ExpandResource -> read parent main dicom tags if required. Not yet getting missing tags from file. Integration tests ok
author | Alain Mazy <am@osimis.io> |
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date | Fri, 11 Mar 2022 17:38:16 +0100 |
parents | 6eff25f70121 |
children | 304514ce84ee |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
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7 * |
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8 * This program is free software: you can redistribute it and/or |
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9 * modify it under the terms of the GNU General Public License as |
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10 * published by the Free Software Foundation, either version 3 of the |
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11 * License, or (at your option) any later version. |
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12 * |
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13 * This program is distributed in the hope that it will be useful, but |
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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16 * General Public License for more details. |
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17 * |
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18 * You should have received a copy of the GNU General Public License |
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "PrecompiledHeadersServer.h" |
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24 #include "OrthancFindRequestHandler.h" |
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25 |
4045 | 26 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
27 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
28 #include "../../OrthancFramework/Sources/Logging.h" | |
29 #include "../../OrthancFramework/Sources/Lua/LuaFunctionCall.h" | |
30 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
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31 #include "OrthancConfiguration.h" |
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32 #include "Search/DatabaseLookup.h" |
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33 #include "ServerContext.h" |
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34 #include "ServerToolbox.h" |
608 | 35 |
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36 #include <boost/regex.hpp> |
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37 |
608 | 38 |
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39 namespace Orthanc |
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40 { |
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41 static void GetChildren(std::list<std::string>& target, |
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42 ServerIndex& index, |
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43 const std::list<std::string>& source) |
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44 { |
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45 target.clear(); |
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46 |
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47 for (std::list<std::string>::const_iterator |
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48 it = source.begin(); it != source.end(); ++it) |
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49 { |
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50 std::list<std::string> tmp; |
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51 index.GetChildren(tmp, *it); |
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52 target.splice(target.end(), tmp); |
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53 } |
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54 } |
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55 |
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56 |
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57 static void StoreSetOfStrings(DicomMap& result, |
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58 const DicomTag& tag, |
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59 const std::set<std::string>& values) |
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60 { |
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61 bool isFirst = true; |
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62 |
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63 std::string s; |
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64 for (std::set<std::string>::const_iterator |
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65 it = values.begin(); it != values.end(); ++it) |
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66 { |
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67 if (isFirst) |
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68 { |
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69 isFirst = false; |
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70 } |
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71 else |
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72 { |
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73 s += "\\"; |
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74 } |
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75 |
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76 s += *it; |
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77 } |
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78 |
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79 result.SetValue(tag, s, false); |
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80 } |
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81 |
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82 |
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83 static void ComputePatientCounters(DicomMap& result, |
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84 ServerIndex& index, |
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85 const std::string& patient, |
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86 const DicomMap& query) |
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87 { |
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88 std::list<std::string> studies; |
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89 index.GetChildren(studies, patient); |
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90 |
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91 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES)) |
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92 { |
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93 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES, |
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94 boost::lexical_cast<std::string>(studies.size()), false); |
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95 } |
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96 |
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97 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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98 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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99 { |
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100 return; |
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101 } |
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102 |
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103 std::list<std::string> series; |
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104 GetChildren(series, index, studies); |
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105 studies.clear(); // This information is useless below |
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106 |
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107 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES)) |
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108 { |
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109 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES, |
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110 boost::lexical_cast<std::string>(series.size()), false); |
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111 } |
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112 |
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113 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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114 { |
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115 return; |
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116 } |
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117 |
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118 std::list<std::string> instances; |
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119 GetChildren(instances, index, series); |
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120 |
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121 if (query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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122 { |
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123 result.SetValue(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES, |
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124 boost::lexical_cast<std::string>(instances.size()), false); |
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125 } |
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126 } |
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127 |
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128 |
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129 static void ComputeStudyCounters(DicomMap& result, |
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130 ServerContext& context, |
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131 const std::string& study, |
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132 const DicomMap& query) |
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133 { |
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134 ServerIndex& index = context.GetIndex(); |
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135 |
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136 std::list<std::string> series; |
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137 index.GetChildren(series, study); |
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138 |
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139 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES)) |
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140 { |
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141 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES, |
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142 boost::lexical_cast<std::string>(series.size()), false); |
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143 } |
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144 |
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145 if (query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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146 { |
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147 std::set<std::string> values; |
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148 |
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149 for (std::list<std::string>::const_iterator |
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150 it = series.begin(); it != series.end(); ++it) |
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151 { |
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152 DicomMap tags; |
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153 if (index.GetMainDicomTags(tags, *it, ResourceType_Series, ResourceType_Series)) |
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154 { |
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155 const DicomValue* value = tags.TestAndGetValue(DICOM_TAG_MODALITY); |
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156 |
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157 if (value != NULL && |
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158 !value->IsNull() && |
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159 !value->IsBinary()) |
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160 { |
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161 values.insert(value->GetContent()); |
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162 } |
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163 } |
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164 } |
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165 |
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166 StoreSetOfStrings(result, DICOM_TAG_MODALITIES_IN_STUDY, values); |
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167 } |
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168 |
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169 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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170 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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171 { |
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172 return; |
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173 } |
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174 |
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175 std::list<std::string> instances; |
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176 GetChildren(instances, index, series); |
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177 |
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178 if (query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES)) |
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179 { |
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180 result.SetValue(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES, |
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181 boost::lexical_cast<std::string>(instances.size()), false); |
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182 } |
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183 |
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184 if (query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY)) |
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185 { |
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186 std::set<std::string> values; |
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187 |
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188 for (std::list<std::string>::const_iterator |
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189 it = instances.begin(); it != instances.end(); ++it) |
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190 { |
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191 std::string value; |
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192 if (context.LookupOrReconstructMetadata(value, *it, ResourceType_Instance, MetadataType_Instance_SopClassUid)) |
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193 { |
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194 values.insert(value); |
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195 } |
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196 } |
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197 |
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198 StoreSetOfStrings(result, DICOM_TAG_SOP_CLASSES_IN_STUDY, values); |
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199 } |
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200 } |
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201 |
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202 |
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203 static void ComputeSeriesCounters(DicomMap& result, |
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204 ServerIndex& index, |
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205 const std::string& series, |
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206 const DicomMap& query) |
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207 { |
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208 std::list<std::string> instances; |
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209 index.GetChildren(instances, series); |
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210 |
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211 if (query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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212 { |
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213 result.SetValue(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES, |
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214 boost::lexical_cast<std::string>(instances.size()), false); |
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215 } |
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216 } |
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217 |
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218 |
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219 static DicomMap* ComputeCounters(ServerContext& context, |
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220 const std::string& instanceId, |
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221 ResourceType level, |
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222 const DicomMap& query) |
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223 { |
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224 switch (level) |
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225 { |
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226 case ResourceType_Patient: |
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227 if (!query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES) && |
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228 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES) && |
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229 !query.HasTag(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES)) |
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230 { |
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231 return NULL; |
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232 } |
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233 |
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234 break; |
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235 |
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236 case ResourceType_Study: |
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237 if (!query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES) && |
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238 !query.HasTag(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES) && |
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239 !query.HasTag(DICOM_TAG_SOP_CLASSES_IN_STUDY) && |
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240 !query.HasTag(DICOM_TAG_MODALITIES_IN_STUDY)) |
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241 { |
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242 return NULL; |
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243 } |
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244 |
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245 break; |
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246 |
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247 case ResourceType_Series: |
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248 if (!query.HasTag(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES)) |
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249 { |
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250 return NULL; |
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251 } |
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252 |
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253 break; |
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254 |
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255 default: |
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256 return NULL; |
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257 } |
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258 |
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259 std::string parent; |
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260 if (!context.GetIndex().LookupParent(parent, instanceId, level)) |
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261 { |
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262 throw OrthancException(ErrorCode_UnknownResource); // The resource was deleted in between |
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263 } |
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264 |
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265 std::unique_ptr<DicomMap> result(new DicomMap); |
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266 |
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267 switch (level) |
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268 { |
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269 case ResourceType_Patient: |
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270 ComputePatientCounters(*result, context.GetIndex(), parent, query); |
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271 break; |
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272 |
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273 case ResourceType_Study: |
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274 ComputeStudyCounters(*result, context, parent, query); |
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275 break; |
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276 |
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277 case ResourceType_Series: |
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278 ComputeSeriesCounters(*result, context.GetIndex(), parent, query); |
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279 break; |
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280 |
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281 default: |
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282 throw OrthancException(ErrorCode_InternalError); |
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283 } |
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284 |
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285 return result.release(); |
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286 } |
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287 |
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288 |
608 | 289 static void AddAnswer(DicomFindAnswers& answers, |
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290 const DicomMap& mainDicomTags, |
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291 const Json::Value* dicomAsJson, |
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292 const DicomArray& query, |
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293 const std::list<DicomTag>& sequencesToReturn, |
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294 const DicomMap* counters, |
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295 const std::string& defaultPrivateCreator, |
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296 const std::map<uint16_t, std::string>& privateCreators, |
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297 const std::string& retrieveAet) |
608 | 298 { |
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299 DicomMap match; |
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300 |
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301 if (dicomAsJson != NULL) |
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302 { |
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303 match.FromDicomAsJson(*dicomAsJson); |
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304 } |
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305 else |
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306 { |
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307 match.Assign(mainDicomTags); |
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308 } |
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309 |
608 | 310 DicomMap result; |
311 | |
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312 /** |
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313 * Add the mandatory "Retrieve AE Title (0008,0054)" tag, which was missing in Orthanc <= 1.7.2. |
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314 * http://dicom.nema.org/medical/dicom/current/output/html/part04.html#sect_C.4.1.1.3.2 |
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315 * https://groups.google.com/g/orthanc-users/c/-7zNTKR_PMU/m/kfjwzEVNAgAJ |
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316 **/ |
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317 result.SetValue(DICOM_TAG_RETRIEVE_AE_TITLE, retrieveAet, false /* not binary */); |
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318 |
608 | 319 for (size_t i = 0; i < query.GetSize(); i++) |
320 { | |
1346 | 321 if (query.GetElement(i).GetTag() == DICOM_TAG_QUERY_RETRIEVE_LEVEL) |
322 { | |
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323 // Fix issue 30 on Google Code (QR response missing "Query/Retrieve Level" (008,0052)) |
1346 | 324 result.SetValue(query.GetElement(i).GetTag(), query.GetElement(i).GetValue()); |
325 } | |
326 else if (query.GetElement(i).GetTag() == DICOM_TAG_SPECIFIC_CHARACTER_SET) | |
327 { | |
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328 // Do not include the encoding, this is handled by class ParsedDicomFile |
1346 | 329 } |
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330 else |
608 | 331 { |
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332 const DicomTag& tag = query.GetElement(i).GetTag(); |
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333 const DicomValue* value = match.TestAndGetValue(tag); |
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334 |
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335 if (value != NULL && |
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336 !value->IsNull() && |
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337 !value->IsBinary()) |
608 | 338 { |
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339 result.SetValue(tag, value->GetContent(), false); |
608 | 340 } |
722 | 341 else |
342 { | |
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|
343 result.SetValue(tag, "", false); |
722 | 344 } |
608 | 345 } |
346 } | |
347 | |
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Support of optional tags for counting resources in C-Find
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348 if (counters != NULL) |
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349 { |
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350 DicomArray tmp(*counters); |
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351 for (size_t i = 0; i < tmp.GetSize(); i++) |
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Support of optional tags for counting resources in C-Find
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352 { |
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
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353 result.SetValue(tmp.GetElement(i).GetTag(), tmp.GetElement(i).GetValue().GetContent(), false); |
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354 } |
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355 } |
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356 |
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357 if (result.GetSize() == 0 && |
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358 sequencesToReturn.empty()) |
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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359 { |
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using CLOG in Orthanc DICOM handlers
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360 CLOG(WARNING, DICOM) << "The C-FIND request does not return any DICOM tag"; |
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361 } |
3015
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362 else if (sequencesToReturn.empty()) |
1859
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363 { |
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364 answers.Add(result); |
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365 } |
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On C-FIND, avoid accessing the storage area whenever possible
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366 else if (dicomAsJson == NULL) |
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On C-FIND, avoid accessing the storage area whenever possible
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367 { |
4287
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using CLOG in Orthanc DICOM handlers
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368 CLOG(WARNING, DICOM) << "C-FIND query requesting a sequence, but reading JSON from disk is disabled"; |
3015
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369 answers.Add(result); |
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370 } |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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371 else |
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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372 { |
4007
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Private tags returned by C-FIND SCP
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373 ParsedDicomFile dicom(result, GetDefaultDicomEncoding(), |
4035
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added contextual privateCreators dico to ParsedDicomFile -> this allows you not to have to define a DefaultPrivateCreator. This was tested only in the scope of C-Find requests but should not have impact on other parts since it is not used out of C-Find right now
Alain Mazy <alain@mazy.be>
parents:
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374 true /* be permissive, cf. issue #136 */, defaultPrivateCreator, privateCreators); |
1859
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375 |
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C-FIND SCP will return tags with sequence value representation
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376 for (std::list<DicomTag>::const_iterator tag = sequencesToReturn.begin(); |
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377 tag != sequencesToReturn.end(); ++tag) |
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378 { |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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379 assert(dicomAsJson != NULL); |
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Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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diff
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380 const Json::Value& source = (*dicomAsJson) [tag->Format()]; |
1859
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381 |
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C-FIND SCP will return tags with sequence value representation
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382 if (source.type() == Json::objectValue && |
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C-FIND SCP will return tags with sequence value representation
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383 source.isMember("Type") && |
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C-FIND SCP will return tags with sequence value representation
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changeset
|
384 source.isMember("Value") && |
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|
385 source["Type"].asString() == "Sequence" && |
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C-FIND SCP will return tags with sequence value representation
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386 source["Value"].type() == Json::arrayValue) |
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C-FIND SCP will return tags with sequence value representation
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387 { |
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388 Json::Value content = Json::arrayValue; |
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C-FIND SCP will return tags with sequence value representation
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diff
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|
389 |
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C-FIND SCP will return tags with sequence value representation
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390 for (Json::Value::ArrayIndex i = 0; i < source["Value"].size(); i++) |
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C-FIND SCP will return tags with sequence value representation
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391 { |
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C-FIND SCP will return tags with sequence value representation
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changeset
|
392 Json::Value item; |
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
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4045
diff
changeset
|
393 Toolbox::SimplifyDicomAsJson(item, source["Value"][i], DicomToJsonFormat_Short); |
1859
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394 content.append(item); |
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C-FIND SCP will return tags with sequence value representation
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|
395 } |
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
396 |
4011
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
397 if (tag->IsPrivate()) |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
398 { |
4028 | 399 std::map<uint16_t, std::string>::const_iterator found = privateCreators.find(tag->GetGroup()); |
400 | |
401 if (found != privateCreators.end()) | |
4020
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collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
402 { |
4028 | 403 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, found->second.c_str()); |
4020
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collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
404 } |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
405 else |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
406 { |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
407 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, defaultPrivateCreator); |
320cde762fd9
collect private creators from the C-Find query itself; use DefaultPrivateCreator otherwise
Alain Mazy <alain@mazy.be>
parents:
4011
diff
changeset
|
408 } |
4011
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
409 } |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
410 else |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
411 { |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
412 dicom.Replace(*tag, content, false, DicomReplaceMode_InsertIfAbsent, "" /* no private creator */); |
914b15dedae3
fix for non private sequence tags in C-Find
Alain Mazy <alain@mazy.be>
parents:
4007
diff
changeset
|
413 } |
1859
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C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
414 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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parents:
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diff
changeset
|
415 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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diff
changeset
|
416 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
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changeset
|
417 answers.Add(dicom); |
1331
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Prevent freeze on C-FIND if no DICOM tag is to be returned
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parents:
1288
diff
changeset
|
418 } |
608 | 419 } |
420 | |
421 | |
1851
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OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
422 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
423 bool OrthancFindRequestHandler::FilterQueryTag(std::string& value /* can be modified */, |
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OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
424 ResourceType level, |
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OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
425 const DicomTag& tag, |
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OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
426 ModalityManufacturer manufacturer) |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
427 { |
2335 | 428 // Whatever the manufacturer, remove the GenericGroupLength tags |
429 // http://dicom.nema.org/medical/dicom/current/output/chtml/part05/sect_7.2.html | |
4476
c1f36fd13730
migrate remaining links to issues in bitbucket to mercurial server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
430 // https://bugs.orthanc-server.com/show_bug.cgi?id=31 |
2434
63194107e61b
fix issue 31 for good: removing group length correctly
amazy
parents:
2382
diff
changeset
|
431 if (tag.GetElement() == 0x0000) |
2317
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
432 { |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
433 return false; |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
434 } |
5b7556568fa4
Incoming C-Find request: removing group-length for all manufacturer -> removed EFilm2 manufacturer that is now useless
amazy
parents:
2256
diff
changeset
|
435 |
1853
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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1851
diff
changeset
|
436 switch (manufacturer) |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
437 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
438 case ModalityManufacturer_Vitrea: |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
439 // Following Denis Nesterov's mail on 2015-11-30 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
440 if (tag == DicomTag(0x5653, 0x0010)) // "PrivateCreator = Vital Images SW 3.4" |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
441 { |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
442 return false; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
443 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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1851
diff
changeset
|
444 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
445 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
446 |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
447 default: |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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diff
changeset
|
448 break; |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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parents:
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diff
changeset
|
449 } |
b7d3d3b182cf
two patches for manufacturers Efilm and Vitrea
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1851
diff
changeset
|
450 |
1851
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
451 return true; |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
452 } |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
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diff
changeset
|
453 |
d364926389e0
OrthancFindRequestHandler::FilterQueryTag
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1800
diff
changeset
|
454 |
1888
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
455 bool OrthancFindRequestHandler::ApplyLuaFilter(DicomMap& target, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
456 const DicomMap& source, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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diff
changeset
|
457 const std::string& remoteIp, |
512b6e76f531
Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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parents:
1859
diff
changeset
|
458 const std::string& remoteAet, |
2827
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2617
diff
changeset
|
459 const std::string& calledAet, |
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2617
diff
changeset
|
460 ModalityManufacturer manufacturer) |
1888
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Lua: "IncomingFindRequestFilter()" to apply filters to incoming C-Find requests
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461 { |
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462 static const char* LUA_CALLBACK = "IncomingFindRequestFilter"; |
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463 |
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464 LuaScripting::Lock lock(context_.GetLuaScripting()); |
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465 |
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466 if (!lock.GetLua().IsExistingFunction(LUA_CALLBACK)) |
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467 { |
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468 return false; |
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469 } |
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470 else |
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471 { |
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472 Json::Value origin; |
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473 FormatOrigin(origin, remoteIp, remoteAet, calledAet, manufacturer); |
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474 |
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475 LuaFunctionCall call(lock.GetLua(), LUA_CALLBACK); |
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476 call.PushDicom(source); |
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477 call.PushJson(origin); |
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478 call.ExecuteToDicom(target); |
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479 |
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480 return true; |
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481 } |
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482 } |
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483 |
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484 |
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485 OrthancFindRequestHandler::OrthancFindRequestHandler(ServerContext& context) : |
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486 context_(context), |
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487 maxResults_(0), |
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488 maxInstances_(0) |
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489 { |
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490 } |
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491 |
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492 |
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493 class OrthancFindRequestHandler::LookupVisitor : public ServerContext::ILookupVisitor |
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494 { |
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495 private: |
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496 DicomFindAnswers& answers_; |
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497 ServerContext& context_; |
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498 ResourceType level_; |
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499 const DicomMap& query_; |
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500 DicomArray queryAsArray_; |
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501 const std::list<DicomTag>& sequencesToReturn_; |
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502 std::string defaultPrivateCreator_; // the private creator to use if the group is not defined in the query itself |
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503 const std::map<uint16_t, std::string>& privateCreators_; // the private creators defined in the query itself |
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504 std::string retrieveAet_; |
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505 |
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506 public: |
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507 LookupVisitor(DicomFindAnswers& answers, |
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508 ServerContext& context, |
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509 ResourceType level, |
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510 const DicomMap& query, |
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511 const std::list<DicomTag>& sequencesToReturn, |
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512 const std::map<uint16_t, std::string>& privateCreators) : |
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513 answers_(answers), |
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514 context_(context), |
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515 level_(level), |
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516 query_(query), |
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517 queryAsArray_(query), |
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518 sequencesToReturn_(sequencesToReturn), |
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519 privateCreators_(privateCreators) |
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520 { |
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521 answers_.SetComplete(false); |
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522 |
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523 { |
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524 OrthancConfiguration::ReaderLock lock; |
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525 defaultPrivateCreator_ = lock.GetConfiguration().GetDefaultPrivateCreator(); |
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526 retrieveAet_ = lock.GetConfiguration().GetOrthancAET(); |
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527 } |
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528 } |
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529 |
4204 | 530 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE |
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531 { |
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532 // Ask the "DICOM-as-JSON" attachment only if sequences are to |
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533 // be returned OR if "query_" contains non-main DICOM tags! |
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534 |
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535 DicomMap withoutSpecialTags; |
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536 withoutSpecialTags.Assign(query_); |
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537 |
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538 // Check out "ComputeCounters()" |
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539 withoutSpecialTags.Remove(DICOM_TAG_MODALITIES_IN_STUDY); |
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540 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_INSTANCES); |
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541 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_SERIES); |
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542 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_PATIENT_RELATED_STUDIES); |
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543 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_SERIES_RELATED_INSTANCES); |
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544 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_INSTANCES); |
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545 withoutSpecialTags.Remove(DICOM_TAG_NUMBER_OF_STUDY_RELATED_SERIES); |
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546 withoutSpecialTags.Remove(DICOM_TAG_SOP_CLASSES_IN_STUDY); |
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547 |
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548 // Check out "AddAnswer()" |
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549 withoutSpecialTags.Remove(DICOM_TAG_SPECIFIC_CHARACTER_SET); |
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550 withoutSpecialTags.Remove(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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551 |
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552 return (!sequencesToReturn_.empty() || |
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553 !withoutSpecialTags.HasOnlyMainDicomTags()); |
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554 } |
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555 |
4204 | 556 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
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557 { |
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558 answers_.SetComplete(true); |
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559 } |
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560 |
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561 virtual void Visit(const std::string& publicId, |
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562 const std::string& instanceId, |
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563 const DicomMap& mainDicomTags, |
4204 | 564 const Json::Value* dicomAsJson) ORTHANC_OVERRIDE |
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565 { |
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566 std::unique_ptr<DicomMap> counters(ComputeCounters(context_, instanceId, level_, query_)); |
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567 |
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568 AddAnswer(answers_, mainDicomTags, dicomAsJson, queryAsArray_, sequencesToReturn_, |
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569 counters.get(), defaultPrivateCreator_, privateCreators_, retrieveAet_); |
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570 } |
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571 }; |
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572 |
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573 |
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574 void OrthancFindRequestHandler::Handle(DicomFindAnswers& answers, |
665 | 575 const DicomMap& input, |
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576 const std::list<DicomTag>& sequencesToReturn, |
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577 const std::string& remoteIp, |
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578 const std::string& remoteAet, |
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579 const std::string& calledAet, |
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580 ModalityManufacturer manufacturer) |
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581 { |
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582 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_find_scp_duration_ms"); |
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583 |
4482
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584 |
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585 /** |
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586 * Deal with global configuration |
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587 **/ |
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588 |
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589 bool caseSensitivePN; |
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590 |
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591 { |
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592 OrthancConfiguration::ReaderLock lock; |
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593 caseSensitivePN = lock.GetConfiguration().GetBooleanParameter("CaseSensitivePN", false); |
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594 |
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595 RemoteModalityParameters remote; |
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596 if (!lock.GetConfiguration().LookupDicomModalityUsingAETitle(remote, remoteAet)) |
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597 { |
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598 if (lock.GetConfiguration().GetBooleanParameter("DicomAlwaysAllowFind", false)) |
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599 { |
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600 CLOG(INFO, DICOM) << "C-FIND: Allowing SCU request from unknown modality with AET: " << remoteAet; |
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601 } |
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602 else |
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603 { |
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604 // This should never happen, given the test at bottom of |
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605 // "OrthancApplicationEntityFilter::IsAllowedRequest()" |
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606 throw OrthancException(ErrorCode_InexistentItem, |
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607 "C-FIND: Rejecting SCU request from unknown modality with AET: " + remoteAet); |
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608 } |
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609 } |
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610 } |
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611 |
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612 |
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613 |
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614 /** |
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615 * Possibly apply the user-supplied Lua filter. |
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616 **/ |
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617 |
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618 DicomMap lua; |
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619 const DicomMap* filteredInput = &input; |
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620 |
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621 if (ApplyLuaFilter(lua, input, remoteIp, remoteAet, calledAet, manufacturer)) |
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622 { |
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623 filteredInput = &lua; |
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624 } |
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625 |
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626 |
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627 /** |
565
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628 * Retrieve the query level. |
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629 **/ |
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630 |
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631 assert(filteredInput != NULL); |
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632 const DicomValue* levelTmp = filteredInput->TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); |
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633 if (levelTmp == NULL || |
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634 levelTmp->IsNull() || |
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635 levelTmp->IsBinary()) |
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636 { |
2955 | 637 throw OrthancException(ErrorCode_BadRequest, |
638 "C-FIND request without the tag 0008,0052 (QueryRetrieveLevel)"); | |
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639 } |
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640 |
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641 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); |
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642 |
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643 if (level != ResourceType_Patient && |
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644 level != ResourceType_Study && |
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645 level != ResourceType_Series && |
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646 level != ResourceType_Instance) |
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647 { |
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648 throw OrthancException(ErrorCode_NotImplemented); |
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649 } |
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650 |
665 | 651 |
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652 DicomArray query(*filteredInput); |
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653 CLOG(INFO, DICOM) << "DICOM C-Find request at level: " << EnumerationToString(level); |
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654 |
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655 for (size_t i = 0; i < query.GetSize(); i++) |
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656 { |
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657 if (!query.GetElement(i).GetValue().IsNull()) |
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658 { |
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659 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format() |
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660 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i)) |
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661 << " = " << context_.GetDeidentifiedContent(query.GetElement(i)); |
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662 } |
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663 } |
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664 |
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665 for (std::list<DicomTag>::const_iterator it = sequencesToReturn.begin(); |
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666 it != sequencesToReturn.end(); ++it) |
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667 { |
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668 CLOG(INFO, DICOM) << " (" << it->Format() |
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669 << ") " << FromDcmtkBridge::GetTagName(*it, "") |
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670 << " : sequence tag whose content will be copied"; |
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671 } |
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672 |
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673 // collect the private creators from the query itself |
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674 std::map<uint16_t, std::string> privateCreators; |
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675 for (size_t i = 0; i < query.GetSize(); i++) |
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676 { |
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677 const DicomElement& element = query.GetElement(i); |
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678 if (element.GetTag().IsPrivate() && element.GetTag().GetElement() == 0x10) |
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679 { |
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680 privateCreators[element.GetTag().GetGroup()] = element.GetValue().GetContent(); |
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681 } |
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682 } |
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683 |
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684 /** |
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685 * Build up the query object. |
608 | 686 **/ |
687 | |
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688 DatabaseLookup lookup; |
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689 |
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690 for (size_t i = 0; i < query.GetSize(); i++) |
714
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691 { |
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692 const DicomElement& element = query.GetElement(i); |
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693 const DicomTag tag = element.GetTag(); |
714
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694 |
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695 if (element.GetValue().IsNull() || |
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696 tag == DICOM_TAG_QUERY_RETRIEVE_LEVEL || |
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697 tag == DICOM_TAG_SPECIFIC_CHARACTER_SET) |
714
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698 { |
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699 continue; |
714
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700 } |
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701 |
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702 std::string value = element.GetValue().GetContent(); |
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703 if (value.size() == 0) |
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704 { |
3163
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Fix issue #90 (C-Find shall match missing tags to null/empty string)
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705 // An empty string corresponds to an universal constraint, so we ignore it |
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706 continue; |
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707 } |
611
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708 |
2256
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709 if (FilterQueryTag(value, level, tag, manufacturer)) |
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710 { |
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711 ValueRepresentation vr = FromDcmtkBridge::LookupValueRepresentation(tag); |
1758 | 712 |
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713 // DICOM specifies that searches must be case sensitive, except |
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714 // for tags with a PN value representation |
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715 bool sensitive = true; |
2007
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DicomMap::ParseDicomMetaInformation()
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716 if (vr == ValueRepresentation_PersonName) |
1851
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717 { |
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718 sensitive = caseSensitivePN; |
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719 } |
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720 |
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721 lookup.AddDicomConstraint(tag, value, sensitive, true /* mandatory */); |
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722 } |
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723 else |
1758 | 724 { |
4287
5a3374b6e707
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diff
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|
725 CLOG(INFO, DICOM) << "Because of a patch for the manufacturer of the remote modality, " |
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726 << "ignoring constraint on tag (" << tag.Format() << ") " |
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727 << FromDcmtkBridge::GetTagName(element); |
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728 } |
611
9924aec1d694
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diff
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|
729 } |
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730 |
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731 |
608 | 732 /** |
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733 * Run the query. |
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734 **/ |
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735 |
2876 | 736 size_t limit = (level == ResourceType_Instance) ? maxInstances_ : maxResults_; |
941
83489fddd8c5
Options to limit the number of results for an incoming C-FIND query
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diff
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|
737 |
3012
af1530b45290
Optimization: On finds, do not read JSON (disk) if main DICOM tags (DB) are sufficient
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738 |
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739 LookupVisitor visitor(answers, context_, level, *filteredInput, sequencesToReturn, privateCreators); |
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740 context_.Apply(visitor, lookup, level, 0 /* "since" is not relevant to C-FIND */, limit); |
565
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741 } |
2827
d4fd4614f275
IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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diff
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|
742 |
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IncomingWorklistRequestFilter() to filter incoming C-FIND worklist queries
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|
743 |
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744 void OrthancFindRequestHandler::FormatOrigin(Json::Value& origin, |
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|
745 const std::string& remoteIp, |
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|
746 const std::string& remoteAet, |
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|
747 const std::string& calledAet, |
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|
748 ModalityManufacturer manufacturer) |
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|
749 { |
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|
750 origin = Json::objectValue; |
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|
751 origin["RemoteIp"] = remoteIp; |
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|
752 origin["RemoteAet"] = remoteAet; |
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|
753 origin["CalledAet"] = calledAet; |
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diff
changeset
|
754 origin["Manufacturer"] = EnumerationToString(manufacturer); |
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|
755 } |
565
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|
756 } |