Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1271:83d8b3eacf49
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 09 Jan 2015 17:23:02 +0100 |
parents | cf5bd2dc3b7a |
children | b4acdb37e43b |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
689 | 3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
0 | 4 * Belgium |
5 * | |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
0 | 43 #include "../Core/Toolbox.h" |
44 #include "../Core/Uuid.h" | |
45 #include "../Core/DicomFormat/DicomArray.h" | |
46 #include "FromDcmtkBridge.h" | |
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47 #include "ServerContext.h" |
0 | 48 |
49 #include <boost/lexical_cast.hpp> | |
50 #include <stdio.h> | |
108 | 51 #include <glog/logging.h> |
0 | 52 |
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53 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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54 |
62 | 55 namespace Orthanc |
0 | 56 { |
57 namespace Internals | |
58 { | |
202 | 59 class ServerIndexListener : public IServerIndexListener |
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60 { |
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61 private: |
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62 struct FileToRemove |
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63 { |
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64 private: |
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65 std::string uuid_; |
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66 FileContentType type_; |
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67 |
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68 public: |
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69 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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70 type_(info.GetContentType()) |
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71 { |
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72 } |
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73 |
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74 const std::string& GetUuid() const |
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75 { |
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76 return uuid_; |
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77 } |
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78 |
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79 FileContentType GetContentType() const |
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80 { |
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81 return type_; |
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82 } |
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83 }; |
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84 |
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85 ServerContext& context_; |
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86 bool hasRemainingLevel_; |
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87 ResourceType remainingType_; |
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88 std::string remainingPublicId_; |
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89 std::list<FileToRemove> pendingFilesToRemove_; |
1196 | 90 std::list<ServerIndexChange> pendingChanges_; |
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91 uint64_t sizeOfFilesToRemove_; |
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92 bool insideTransaction_; |
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93 |
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94 void Reset() |
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95 { |
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96 sizeOfFilesToRemove_ = 0; |
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97 hasRemainingLevel_ = false; |
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98 pendingFilesToRemove_.clear(); |
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99 pendingChanges_.clear(); |
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100 } |
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101 |
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102 public: |
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103 ServerIndexListener(ServerContext& context) : context_(context), |
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104 insideTransaction_(false) |
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105 { |
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106 Reset(); |
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107 assert(ResourceType_Patient < ResourceType_Study && |
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108 ResourceType_Study < ResourceType_Series && |
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109 ResourceType_Series < ResourceType_Instance); |
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110 } |
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111 |
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112 void StartTransaction() |
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113 { |
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114 Reset(); |
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115 insideTransaction_ = true; |
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116 } |
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117 |
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118 void EndTransaction() |
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119 { |
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120 insideTransaction_ = false; |
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121 } |
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122 |
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123 uint64_t GetSizeOfFilesToRemove() |
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124 { |
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125 return sizeOfFilesToRemove_; |
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126 } |
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127 |
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128 void CommitFilesToRemove() |
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129 { |
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130 for (std::list<FileToRemove>::const_iterator |
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131 it = pendingFilesToRemove_.begin(); |
656 | 132 it != pendingFilesToRemove_.end(); ++it) |
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133 { |
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134 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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135 } |
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136 } |
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137 |
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138 void CommitChanges() |
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139 { |
1196 | 140 for (std::list<ServerIndexChange>::const_iterator |
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141 it = pendingChanges_.begin(); |
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142 it != pendingChanges_.end(); it++) |
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143 { |
1198 | 144 context_.SignalChange(*it); |
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145 } |
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146 } |
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147 |
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148 virtual void SignalRemainingAncestor(ResourceType parentType, |
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149 const std::string& publicId) |
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150 { |
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151 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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152 |
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153 if (hasRemainingLevel_) |
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154 { |
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155 if (parentType < remainingType_) |
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156 { |
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157 remainingType_ = parentType; |
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158 remainingPublicId_ = publicId; |
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159 } |
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160 } |
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161 else |
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162 { |
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163 hasRemainingLevel_ = true; |
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164 remainingType_ = parentType; |
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165 remainingPublicId_ = publicId; |
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166 } |
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167 } |
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168 |
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169 virtual void SignalFileDeleted(const FileInfo& info) |
201
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170 { |
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171 assert(Toolbox::IsUuid(info.GetUuid())); |
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172 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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173 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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174 } |
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175 |
1198 | 176 virtual void SignalChange(const ServerIndexChange& change) |
1158 | 177 { |
1198 | 178 LOG(INFO) << "Change related to resource " << change.GetPublicId() << " of type " |
179 << EnumerationToString(change.GetResourceType()) << ": " | |
180 << EnumerationToString(change.GetChangeType()); | |
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181 |
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182 if (insideTransaction_) |
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183 { |
1198 | 184 pendingChanges_.push_back(change); |
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185 } |
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186 else |
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187 { |
1198 | 188 context_.SignalChange(change); |
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189 } |
1158 | 190 } |
191 | |
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192 bool HasRemainingLevel() const |
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193 { |
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194 return hasRemainingLevel_; |
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195 } |
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196 |
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197 ResourceType GetRemainingType() const |
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198 { |
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199 assert(HasRemainingLevel()); |
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200 return remainingType_; |
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201 } |
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202 |
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203 const std::string& GetRemainingPublicId() const |
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204 { |
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205 assert(HasRemainingLevel()); |
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206 return remainingPublicId_; |
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207 } |
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208 }; |
0 | 209 } |
210 | |
211 | |
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212 class ServerIndex::Transaction |
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213 { |
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214 private: |
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215 ServerIndex& index_; |
1235 | 216 std::auto_ptr<SQLite::ITransaction> transaction_; |
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217 bool isCommitted_; |
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218 |
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219 public: |
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220 Transaction(ServerIndex& index) : |
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221 index_(index), |
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222 isCommitted_(false) |
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223 { |
1247 | 224 transaction_.reset(index_.db_.StartTransaction()); |
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225 transaction_->Begin(); |
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226 |
1270 | 227 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
228 | |
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229 index_.listener_->StartTransaction(); |
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230 } |
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231 |
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232 ~Transaction() |
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233 { |
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234 index_.listener_->EndTransaction(); |
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235 } |
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236 |
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237 void Commit(uint64_t sizeOfAddedFiles) |
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238 { |
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239 if (!isCommitted_) |
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240 { |
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241 transaction_->Commit(); |
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242 |
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243 // We can remove the files once the SQLite transaction has |
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244 // been successfully committed. Some files might have to be |
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245 // deleted because of recycling. |
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246 index_.listener_->CommitFilesToRemove(); |
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247 |
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248 index_.currentStorageSize_ += sizeOfAddedFiles; |
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249 |
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250 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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251 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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252 |
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253 // Send all the pending changes to the Orthanc plugins |
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254 index_.listener_->CommitChanges(); |
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255 |
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256 isCommitted_ = true; |
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257 } |
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258 } |
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259 }; |
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260 |
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261 |
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262 class ServerIndex::UnstableResourcePayload |
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263 { |
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264 private: |
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265 ResourceType type_; |
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266 std::string publicId_; |
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267 boost::posix_time::ptime time_; |
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268 |
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269 public: |
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270 UnstableResourcePayload() : type_(ResourceType_Instance) |
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271 { |
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272 } |
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273 |
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274 UnstableResourcePayload(Orthanc::ResourceType type, |
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275 const std::string& publicId) : |
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276 type_(type), |
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277 publicId_(publicId) |
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278 { |
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279 time_ = boost::posix_time::second_clock::local_time(); |
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280 } |
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281 |
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282 unsigned int GetAge() const |
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283 { |
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284 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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285 } |
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286 |
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287 ResourceType GetResourceType() const |
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288 { |
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289 return type_; |
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290 } |
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291 |
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292 const std::string& GetPublicId() const |
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293 { |
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294 return publicId_; |
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295 } |
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296 }; |
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297 |
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298 |
212 | 299 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 300 const std::string& uuid, |
202 | 301 ResourceType expectedType) |
0 | 302 { |
206
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303 boost::mutex::scoped_lock lock(mutex_); |
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304 |
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305 Transaction t(*this); |
201
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306 |
202 | 307 int64_t id; |
308 ResourceType type; | |
1247 | 309 if (!db_.LookupResource(uuid, id, type) || |
202 | 310 expectedType != type) |
0 | 311 { |
312 return false; | |
313 } | |
202 | 314 |
1247 | 315 db_.DeleteResource(id); |
0 | 316 |
202 | 317 if (listener_->HasRemainingLevel()) |
0 | 318 { |
202 | 319 ResourceType type = listener_->GetRemainingType(); |
320 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 321 |
322 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 323 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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324 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 325 target["RemainingAncestor"]["ID"] = uuid; |
326 } | |
327 else | |
328 { | |
329 target["RemainingAncestor"] = Json::nullValue; | |
330 } | |
331 | |
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332 t.Commit(0); |
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333 |
0 | 334 return true; |
335 } | |
336 | |
337 | |
511
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338 void ServerIndex::FlushThread(ServerIndex* that) |
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339 { |
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340 // By default, wait for 10 seconds before flushing |
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341 unsigned int sleep = 10; |
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342 |
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343 try |
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344 { |
744 | 345 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 346 std::string sleepString; |
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347 |
1247 | 348 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 349 Toolbox::IsInteger(sleepString)) |
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350 { |
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351 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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352 } |
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353 } |
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354 catch (boost::bad_lexical_cast&) |
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355 { |
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356 } |
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357 |
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358 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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359 |
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360 unsigned int count = 0; |
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361 |
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362 while (!that->done_) |
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363 { |
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364 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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365 count++; |
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366 if (count < sleep) |
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367 { |
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368 continue; |
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369 } |
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370 |
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371 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 372 that->db_.FlushToDisk(); |
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373 count = 0; |
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374 } |
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375 |
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376 LOG(INFO) << "Stopping the database flushing thread"; |
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377 } |
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378 |
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379 |
1247 | 380 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 381 int64_t series, |
382 const DicomMap& dicomSummary) | |
383 { | |
384 try | |
385 { | |
656 | 386 const DicomValue* value; |
387 const DicomValue* value2; | |
388 | |
433 | 389 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
390 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
391 { | |
392 // Patch for series with temporal positions thanks to Will Ryder | |
393 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
394 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
395 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
396 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
397 } | |
398 | |
399 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
400 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
401 { | |
402 // Support of Cardio-PET images | |
403 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
404 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
405 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
406 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
407 } | |
408 | |
409 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
410 { | |
411 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
412 } | |
413 } | |
414 catch (boost::bad_lexical_cast) | |
415 { | |
416 } | |
417 } | |
418 | |
419 | |
1237 | 420 |
421 | |
1238 | 422 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 423 int64_t id, |
424 MetadataType type) | |
425 { | |
1238 | 426 std::string s; |
1247 | 427 if (!db_.LookupMetadata(s, id, type)) |
1237 | 428 { |
429 return false; | |
430 } | |
431 | |
432 try | |
433 { | |
1238 | 434 result = boost::lexical_cast<int64_t>(s); |
1237 | 435 return true; |
436 } | |
437 catch (boost::bad_lexical_cast&) | |
438 { | |
439 return false; | |
440 } | |
441 } | |
442 | |
443 | |
444 | |
445 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
446 { | |
447 std::string oldValue; | |
448 | |
1247 | 449 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 450 { |
451 uint64_t oldNumber; | |
452 | |
453 try | |
454 { | |
455 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 456 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 457 return oldNumber + 1; |
458 } | |
459 catch (boost::bad_lexical_cast&) | |
460 { | |
461 throw OrthancException(ErrorCode_InternalError); | |
462 } | |
463 } | |
464 else | |
465 { | |
466 // Initialize the sequence at "1" | |
1247 | 467 db_.SetGlobalProperty(property, "1"); |
1237 | 468 return 1; |
469 } | |
470 } | |
471 | |
472 | |
473 | |
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474 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 475 IDatabaseWrapper& db) : |
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476 done_(false), |
1247 | 477 db_(db), |
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478 maximumStorageSize_(0), |
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479 maximumPatients_(0) |
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480 { |
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481 listener_.reset(new Internals::ServerIndexListener(context)); |
1247 | 482 db_.SetListener(*listener_); |
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483 |
1247 | 484 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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485 |
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486 // Initial recycling if the parameters have changed since the last |
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487 // execution of Orthanc |
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488 StandaloneRecycling(); |
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489 |
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490 flushThread_ = boost::thread(FlushThread, this); |
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491 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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492 } |
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493 |
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494 |
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495 ServerIndex::~ServerIndex() |
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496 { |
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497 done_ = true; |
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498 |
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499 if (flushThread_.joinable()) |
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500 { |
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501 flushThread_.join(); |
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502 } |
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503 |
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504 if (unstableResourcesMonitorThread_.joinable()) |
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505 { |
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506 unstableResourcesMonitorThread_.join(); |
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507 } |
0 | 508 } |
509 | |
510 | |
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511 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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512 const DicomMap& dicomSummary, |
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513 const Attachments& attachments, |
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514 const std::string& remoteAet, |
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515 const MetadataMap& metadata) |
0 | 516 { |
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517 boost::mutex::scoped_lock lock(mutex_); |
0 | 518 |
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519 instanceMetadata.clear(); |
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520 |
178 | 521 DicomInstanceHasher hasher(dicomSummary); |
0 | 522 |
523 try | |
524 { | |
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525 Transaction t(*this); |
0 | 526 |
202 | 527 // Do nothing if the instance already exists |
0 | 528 { |
432 | 529 ResourceType type; |
530 int64_t tmp; | |
1247 | 531 if (db_.LookupResource(hasher.HashInstance(), tmp, type)) |
432 | 532 { |
533 assert(type == ResourceType_Instance); | |
1247 | 534 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 535 return StoreStatus_AlreadyStored; |
536 } | |
0 | 537 } |
538 | |
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539 // Ensure there is enough room in the storage for the new instance |
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540 uint64_t instanceSize = 0; |
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541 for (Attachments::const_iterator it = attachments.begin(); |
656 | 542 it != attachments.end(); ++it) |
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543 { |
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544 instanceSize += it->GetCompressedSize(); |
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545 } |
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546 |
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547 Recycle(instanceSize, hasher.HashPatient()); |
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548 |
202 | 549 // Create the instance |
1247 | 550 int64_t instance = db_.CreateResource(hasher.HashInstance(), ResourceType_Instance); |
202 | 551 |
552 DicomMap dicom; | |
553 dicomSummary.ExtractInstanceInformation(dicom); | |
1247 | 554 db_.SetMainDicomTags(instance, dicom); |
202 | 555 |
432 | 556 // Detect up to which level the patient/study/series/instance |
557 // hierarchy must be created | |
558 int64_t patient = -1, study = -1, series = -1; | |
559 bool isNewPatient = false; | |
560 bool isNewStudy = false; | |
561 bool isNewSeries = false; | |
562 | |
0 | 563 { |
432 | 564 ResourceType dummy; |
565 | |
1247 | 566 if (db_.LookupResource(hasher.HashSeries(), series, dummy)) |
432 | 567 { |
568 assert(dummy == ResourceType_Series); | |
569 // The patient, the study and the series already exist | |
570 | |
1247 | 571 bool ok = (db_.LookupResource(hasher.HashPatient(), patient, dummy) && |
572 db_.LookupResource(hasher.HashStudy(), study, dummy)); | |
432 | 573 assert(ok); |
574 } | |
1247 | 575 else if (db_.LookupResource(hasher.HashStudy(), study, dummy)) |
432 | 576 { |
577 assert(dummy == ResourceType_Study); | |
578 | |
579 // New series: The patient and the study already exist | |
580 isNewSeries = true; | |
581 | |
1247 | 582 bool ok = db_.LookupResource(hasher.HashPatient(), patient, dummy); |
432 | 583 assert(ok); |
584 } | |
1247 | 585 else if (db_.LookupResource(hasher.HashPatient(), patient, dummy)) |
432 | 586 { |
587 assert(dummy == ResourceType_Patient); | |
588 | |
589 // New study and series: The patient already exist | |
590 isNewStudy = true; | |
591 isNewSeries = true; | |
592 } | |
593 else | |
594 { | |
595 // New patient, study and series: Nothing exists | |
596 isNewPatient = true; | |
597 isNewStudy = true; | |
598 isNewSeries = true; | |
599 } | |
600 } | |
601 | |
602 // Create the series if needed | |
603 if (isNewSeries) | |
604 { | |
1247 | 605 series = db_.CreateResource(hasher.HashSeries(), ResourceType_Series); |
202 | 606 dicomSummary.ExtractSeriesInformation(dicom); |
1247 | 607 db_.SetMainDicomTags(series, dicom); |
432 | 608 } |
202 | 609 |
432 | 610 // Create the study if needed |
611 if (isNewStudy) | |
612 { | |
1247 | 613 study = db_.CreateResource(hasher.HashStudy(), ResourceType_Study); |
432 | 614 dicomSummary.ExtractStudyInformation(dicom); |
1247 | 615 db_.SetMainDicomTags(study, dicom); |
432 | 616 } |
617 | |
618 // Create the patient if needed | |
619 if (isNewPatient) | |
620 { | |
1247 | 621 patient = db_.CreateResource(hasher.HashPatient(), ResourceType_Patient); |
432 | 622 dicomSummary.ExtractPatientInformation(dicom); |
1247 | 623 db_.SetMainDicomTags(patient, dicom); |
432 | 624 } |
202 | 625 |
432 | 626 // Create the parent-to-child links |
1247 | 627 db_.AttachChild(series, instance); |
432 | 628 |
629 if (isNewSeries) | |
630 { | |
1247 | 631 db_.AttachChild(study, series); |
0 | 632 } |
432 | 633 |
634 if (isNewStudy) | |
0 | 635 { |
1247 | 636 db_.AttachChild(patient, study); |
0 | 637 } |
638 | |
432 | 639 // Sanity checks |
640 assert(patient != -1); | |
641 assert(study != -1); | |
642 assert(series != -1); | |
643 assert(instance != -1); | |
644 | |
202 | 645 // Attach the files to the newly created instance |
232
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646 for (Attachments::const_iterator it = attachments.begin(); |
656 | 647 it != attachments.end(); ++it) |
232
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648 { |
1247 | 649 db_.AddAttachment(instance, *it); |
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650 } |
202 | 651 |
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652 // Attach the user-specified metadata |
1006
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653 for (MetadataMap::const_iterator |
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654 it = metadata.begin(); it != metadata.end(); ++it) |
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655 { |
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656 switch (it->first.first) |
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657 { |
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658 case ResourceType_Patient: |
1247 | 659 db_.SetMetadata(patient, it->first.second, it->second); |
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660 break; |
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661 |
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662 case ResourceType_Study: |
1247 | 663 db_.SetMetadata(study, it->first.second, it->second); |
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664 break; |
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665 |
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666 case ResourceType_Series: |
1247 | 667 db_.SetMetadata(series, it->first.second, it->second); |
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668 break; |
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669 |
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670 case ResourceType_Instance: |
1247 | 671 db_.SetMetadata(instance, it->first.second, it->second); |
1006
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672 instanceMetadata[it->first.second] = it->second; |
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673 break; |
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674 |
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675 default: |
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676 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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677 } |
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678 } |
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679 |
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680 // Attach the auto-computed metadata for the patient/study/series levels |
432 | 681 std::string now = Toolbox::GetNowIsoString(); |
1247 | 682 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
683 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
684 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
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685 |
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686 // Attach the auto-computed metadata for the instance level, |
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687 // reflecting these additions into the input metadata map |
1247 | 688 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
1006
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689 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
202 | 690 |
1247 | 691 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
1006
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692 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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693 |
202 | 694 const DicomValue* value; |
695 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
696 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 697 { |
1247 | 698 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
1006
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699 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
0 | 700 } |
701 | |
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702 // Check whether the series of this new instance is now completed |
202 | 703 if (isNewSeries) |
704 { | |
1247 | 705 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 706 } |
707 | |
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708 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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709 if (seriesStatus == SeriesStatus_Complete) |
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710 { |
1237 | 711 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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712 } |
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713 |
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714 // Mark the parent resources of this instance as unstable |
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715 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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716 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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717 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
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718 |
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719 t.Commit(instanceSize); |
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720 |
0 | 721 return StoreStatus_Success; |
722 } | |
62 | 723 catch (OrthancException& e) |
0 | 724 { |
1247 | 725 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 726 } |
727 | |
728 return StoreStatus_Failure; | |
729 } | |
730 | |
731 | |
238 | 732 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 733 { |
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734 boost::mutex::scoped_lock lock(mutex_); |
238 | 735 target = Json::objectValue; |
0 | 736 |
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737 uint64_t cs = currentStorageSize_; |
1247 | 738 assert(cs == db_.GetTotalCompressedSize()); |
739 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
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740 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 741 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
440
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742 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
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743 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
238 | 744 |
1247 | 745 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
746 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
747 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
748 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 749 } |
750 | |
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751 |
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752 |
585 | 753 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 754 { |
755 // Get the expected number of instances in this series (from the metadata) | |
1238 | 756 int64_t expected; |
757 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 758 { |
759 return SeriesStatus_Unknown; | |
760 } | |
761 | |
762 // Loop over the instances of this series | |
763 std::list<int64_t> children; | |
1247 | 764 db_.GetChildrenInternalId(children, id); |
199 | 765 |
1238 | 766 std::set<int64_t> instances; |
199 | 767 for (std::list<int64_t>::const_iterator |
656 | 768 it = children.begin(); it != children.end(); ++it) |
199 | 769 { |
770 // Get the index of this instance in the series | |
1238 | 771 int64_t index; |
772 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 773 { |
774 return SeriesStatus_Unknown; | |
775 } | |
776 | |
656 | 777 if (!(index > 0 && index <= expected)) |
199 | 778 { |
779 // Out-of-range instance index | |
780 return SeriesStatus_Inconsistent; | |
781 } | |
782 | |
783 if (instances.find(index) != instances.end()) | |
784 { | |
785 // Twice the same instance index | |
786 return SeriesStatus_Inconsistent; | |
787 } | |
788 | |
789 instances.insert(index); | |
790 } | |
791 | |
1238 | 792 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 793 { |
794 return SeriesStatus_Complete; | |
795 } | |
796 else | |
797 { | |
798 return SeriesStatus_Missing; | |
799 } | |
800 } | |
801 | |
802 | |
803 | |
202 | 804 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
805 int64_t resourceId) | |
198
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806 { |
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807 DicomMap tags; |
1247 | 808 db_.GetMainDicomTags(tags, resourceId); |
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809 target["MainDicomTags"] = Json::objectValue; |
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810 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
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811 } |
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812 |
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813 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 814 const std::string& publicId, |
815 ResourceType expectedType) | |
198
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816 { |
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817 result = Json::objectValue; |
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818 |
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819 boost::mutex::scoped_lock lock(mutex_); |
199 | 820 |
198
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821 // Lookup for the requested resource |
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822 int64_t id; |
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823 ResourceType type; |
1247 | 824 if (!db_.LookupResource(publicId, id, type) || |
199 | 825 type != expectedType) |
198
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826 { |
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827 return false; |
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828 } |
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829 |
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830 // Find the parent resource (if it exists) |
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831 if (type != ResourceType_Patient) |
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832 { |
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833 int64_t parentId; |
1247 | 834 if (!db_.LookupParent(parentId, id)) |
198
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835 { |
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|
836 throw OrthancException(ErrorCode_InternalError); |
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|
837 } |
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838 |
1247 | 839 std::string parent = db_.GetPublicId(parentId); |
198
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840 |
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841 switch (type) |
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|
842 { |
269
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|
843 case ResourceType_Study: |
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844 result["ParentPatient"] = parent; |
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845 break; |
198
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|
846 |
269
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847 case ResourceType_Series: |
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848 result["ParentStudy"] = parent; |
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849 break; |
198
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|
850 |
269
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851 case ResourceType_Instance: |
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852 result["ParentSeries"] = parent; |
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853 break; |
198
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changeset
|
854 |
269
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|
855 default: |
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|
856 throw OrthancException(ErrorCode_InternalError); |
198
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|
857 } |
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|
858 } |
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|
859 |
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|
860 // List the children resources |
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|
861 std::list<std::string> children; |
1247 | 862 db_.GetChildrenPublicId(children, id); |
198
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|
863 |
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|
864 if (type != ResourceType_Instance) |
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|
865 { |
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diff
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|
866 Json::Value c = Json::arrayValue; |
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diff
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|
867 |
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diff
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|
868 for (std::list<std::string>::const_iterator |
656 | 869 it = children.begin(); it != children.end(); ++it) |
198
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|
870 { |
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diff
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|
871 c.append(*it); |
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|
872 } |
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|
873 |
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diff
changeset
|
874 switch (type) |
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diff
changeset
|
875 { |
269
f6fdf5abe751
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diff
changeset
|
876 case ResourceType_Patient: |
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diff
changeset
|
877 result["Studies"] = c; |
f6fdf5abe751
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diff
changeset
|
878 break; |
198
663cc6c46d0a
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diff
changeset
|
879 |
269
f6fdf5abe751
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diff
changeset
|
880 case ResourceType_Study: |
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diff
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|
881 result["Series"] = c; |
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diff
changeset
|
882 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
883 |
269
f6fdf5abe751
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diff
changeset
|
884 case ResourceType_Series: |
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diff
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|
885 result["Instances"] = c; |
f6fdf5abe751
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diff
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|
886 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
887 |
269
f6fdf5abe751
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diff
changeset
|
888 default: |
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diff
changeset
|
889 throw OrthancException(ErrorCode_InternalError); |
198
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diff
changeset
|
890 } |
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diff
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|
891 } |
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|
892 |
663cc6c46d0a
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diff
changeset
|
893 // Set the resource type |
663cc6c46d0a
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diff
changeset
|
894 switch (type) |
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diff
changeset
|
895 { |
269
f6fdf5abe751
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diff
changeset
|
896 case ResourceType_Patient: |
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diff
changeset
|
897 result["Type"] = "Patient"; |
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diff
changeset
|
898 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
899 |
269
f6fdf5abe751
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diff
changeset
|
900 case ResourceType_Study: |
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diff
changeset
|
901 result["Type"] = "Study"; |
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diff
changeset
|
902 break; |
199 | 903 |
269
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diff
changeset
|
904 case ResourceType_Series: |
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diff
changeset
|
905 { |
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diff
changeset
|
906 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
907 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
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diff
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|
908 |
1238 | 909 int64_t i; |
1237 | 910 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 911 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
f6fdf5abe751
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268
diff
changeset
|
912 else |
f6fdf5abe751
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268
diff
changeset
|
913 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
914 |
269
f6fdf5abe751
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268
diff
changeset
|
915 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
916 } |
9c58b2b03cf0
refactoring of read operations
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199
diff
changeset
|
917 |
269
f6fdf5abe751
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268
diff
changeset
|
918 case ResourceType_Instance: |
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268
diff
changeset
|
919 { |
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diff
changeset
|
920 result["Type"] = "Instance"; |
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diff
changeset
|
921 |
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268
diff
changeset
|
922 FileInfo attachment; |
1247 | 923 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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diff
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|
924 { |
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diff
changeset
|
925 throw OrthancException(ErrorCode_InternalError); |
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268
diff
changeset
|
926 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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199
diff
changeset
|
927 |
269
f6fdf5abe751
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diff
changeset
|
928 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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268
diff
changeset
|
929 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
930 |
1238 | 931 int64_t i; |
1237 | 932 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 933 result["IndexInSeries"] = static_cast<int>(i); |
269
f6fdf5abe751
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diff
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|
934 else |
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268
diff
changeset
|
935 result["IndexInSeries"] = Json::nullValue; |
198
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|
936 |
269
f6fdf5abe751
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diff
changeset
|
937 break; |
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|
938 } |
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changeset
|
939 |
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changeset
|
940 default: |
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changeset
|
941 throw OrthancException(ErrorCode_InternalError); |
198
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|
942 } |
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|
943 |
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|
944 // Record the remaining information |
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diff
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|
945 result["ID"] = publicId; |
202 | 946 MainDicomTagsToJson(result, id); |
198
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|
947 |
315 | 948 std::string tmp; |
949 | |
1247 | 950 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 951 { |
315 | 952 result["AnonymizedFrom"] = tmp; |
1236 | 953 } |
315 | 954 |
1247 | 955 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 956 { |
315 | 957 result["ModifiedFrom"] = tmp; |
1236 | 958 } |
315 | 959 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
960 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
961 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
962 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
963 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
964 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
965 |
1247 | 966 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 967 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
968 result["LastUpdate"] = tmp; |
1236 | 969 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
970 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
971 |
198
663cc6c46d0a
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diff
changeset
|
972 return true; |
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diff
changeset
|
973 } |
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diff
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974 |
0 | 975 |
232
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976 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
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977 const std::string& instanceUuid, |
233 | 978 FileContentType contentType) |
0 | 979 { |
206
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980 boost::mutex::scoped_lock lock(mutex_); |
0 | 981 |
193
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982 int64_t id; |
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983 ResourceType type; |
1247 | 984 if (!db_.LookupResource(instanceUuid, id, type)) |
192
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985 { |
1113
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986 throw OrthancException(ErrorCode_UnknownResource); |
192
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987 } |
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988 |
1247 | 989 if (db_.LookupAttachment(attachment, id, contentType)) |
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990 { |
233 | 991 assert(attachment.GetContentType() == contentType); |
232
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992 return true; |
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993 } |
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994 else |
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995 { |
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996 return false; |
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997 } |
192
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998 } |
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999 |
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1000 |
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1001 |
0 | 1002 void ServerIndex::GetAllUuids(Json::Value& target, |
190 | 1003 ResourceType resourceType) |
0 | 1004 { |
1241 | 1005 std::list<std::string> lst; |
1006 | |
1007 { | |
1008 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1009 db_.GetAllPublicIds(lst, resourceType); |
1241 | 1010 } |
1011 | |
1012 target = Json::arrayValue; | |
1013 for (std::list<std::string>::const_iterator | |
1014 it = lst.begin(); it != lst.end(); it++) | |
1015 { | |
1016 target.append(*it); | |
1017 } | |
0 | 1018 } |
1019 | |
1020 | |
1244 | 1021 template <typename T> |
1022 static void FormatLog(Json::Value& target, | |
1023 const std::list<T>& log, | |
1024 const std::string& name, | |
1025 bool done, | |
1026 int64_t since) | |
1240 | 1027 { |
1028 Json::Value items = Json::arrayValue; | |
1244 | 1029 for (typename std::list<T>::const_iterator |
1030 it = log.begin(); it != log.end(); it++) | |
1240 | 1031 { |
1032 Json::Value item; | |
1033 it->Format(item); | |
1034 items.append(item); | |
1035 } | |
1036 | |
1037 target = Json::objectValue; | |
1244 | 1038 target[name] = items; |
1240 | 1039 target["Done"] = done; |
1040 | |
1244 | 1041 int64_t last = (log.size() == 0 ? since : log.back().GetSeq()); |
1240 | 1042 target["Last"] = static_cast<int>(last); |
1043 } | |
1044 | |
1045 | |
1247 | 1046 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1047 int64_t since, |
0 | 1048 unsigned int maxResults) |
1049 { | |
1240 | 1050 std::list<ServerIndexChange> changes; |
1051 bool done; | |
1052 | |
1053 { | |
1054 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1055 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1056 } |
1057 | |
1244 | 1058 FormatLog(target, changes, "Changes", done, since); |
237
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1059 } |
0 | 1060 |
1240 | 1061 |
1247 | 1062 void ServerIndex::GetLastChange(Json::Value& target) |
237
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1063 { |
1240 | 1064 std::list<ServerIndexChange> changes; |
1065 | |
1066 { | |
1067 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1068 db_.GetLastChange(changes); |
1240 | 1069 } |
1070 | |
1244 | 1071 FormatLog(target, changes, "Changes", true, 0); |
0 | 1072 } |
231 | 1073 |
1240 | 1074 |
231 | 1075 void ServerIndex::LogExportedResource(const std::string& publicId, |
1076 const std::string& remoteModality) | |
1077 { | |
1078 boost::mutex::scoped_lock lock(mutex_); | |
1079 | |
1080 int64_t id; | |
1081 ResourceType type; | |
1247 | 1082 if (!db_.LookupResource(publicId, id, type)) |
231 | 1083 { |
1084 throw OrthancException(ErrorCode_InternalError); | |
1085 } | |
1086 | |
1087 std::string patientId; | |
1088 std::string studyInstanceUid; | |
1089 std::string seriesInstanceUid; | |
1090 std::string sopInstanceUid; | |
1091 | |
1092 int64_t currentId = id; | |
1093 ResourceType currentType = type; | |
1094 | |
1095 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1096 bool done = false; | |
1097 while (!done) | |
1098 { | |
1099 DicomMap map; | |
1247 | 1100 db_.GetMainDicomTags(map, currentId); |
231 | 1101 |
1102 switch (currentType) | |
1103 { | |
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1104 case ResourceType_Patient: |
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1105 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1106 done = true; |
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1107 break; |
231 | 1108 |
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1109 case ResourceType_Study: |
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1110 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1111 currentType = ResourceType_Patient; |
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1112 break; |
231 | 1113 |
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1114 case ResourceType_Series: |
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1115 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1116 currentType = ResourceType_Study; |
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1117 break; |
231 | 1118 |
269
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1119 case ResourceType_Instance: |
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1120 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1121 currentType = ResourceType_Series; |
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1122 break; |
231 | 1123 |
269
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1124 default: |
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1125 throw OrthancException(ErrorCode_InternalError); |
231 | 1126 } |
1127 | |
1128 // If we have not reached the Patient level, find the parent of | |
1129 // the current resource | |
1130 if (!done) | |
1131 { | |
1247 | 1132 bool ok = db_.LookupParent(currentId, currentId); |
375
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1133 assert(ok); |
231 | 1134 } |
1135 } | |
1136 | |
1235 | 1137 // No need for a SQLite::ITransaction here, as we only insert 1 record |
1246 | 1138 ExportedResource resource(-1, |
1139 type, | |
1140 publicId, | |
1141 remoteModality, | |
1142 Toolbox::GetNowIsoString(), | |
1143 patientId, | |
1144 studyInstanceUid, | |
1145 seriesInstanceUid, | |
1146 sopInstanceUid); | |
1247 | 1147 db_.LogExportedResource(resource); |
231 | 1148 } |
1149 | |
1150 | |
1247 | 1151 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1152 int64_t since, |
1153 unsigned int maxResults) | |
1154 { | |
1244 | 1155 std::list<ExportedResource> exported; |
1156 bool done; | |
1157 | |
1158 { | |
1159 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1160 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1161 } |
1162 | |
1163 FormatLog(target, exported, "Exports", done, since); | |
231 | 1164 } |
237
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1165 |
1244 | 1166 |
1247 | 1167 void ServerIndex::GetLastExportedResource(Json::Value& target) |
237
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1168 { |
1244 | 1169 std::list<ExportedResource> exported; |
1170 | |
1171 { | |
1172 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1173 db_.GetLastExportedResource(exported); |
1244 | 1174 } |
1175 | |
1176 FormatLog(target, exported, "Exports", true, 0); | |
237
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1177 } |
268
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1178 |
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1179 |
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1180 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1181 { |
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1182 if (maximumStorageSize_ != 0) |
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1183 { |
278
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1184 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1185 assert(db_.GetTotalCompressedSize() == currentSize); |
278
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1186 |
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1187 if (currentSize + instanceSize > maximumStorageSize_) |
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1188 { |
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1189 return true; |
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1190 } |
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1191 } |
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1192 |
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1193 if (maximumPatients_ != 0) |
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1194 { |
1247 | 1195 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
269
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1196 if (patientCount > maximumPatients_) |
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1197 { |
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1198 return true; |
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1199 } |
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1200 } |
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1201 |
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1202 return false; |
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1203 } |
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1204 |
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1205 |
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1206 void ServerIndex::Recycle(uint64_t instanceSize, |
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1207 const std::string& newPatientId) |
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1208 { |
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1209 if (!IsRecyclingNeeded(instanceSize)) |
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1210 { |
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1211 return; |
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1212 } |
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1213 |
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1214 // Check whether other DICOM instances from this patient are |
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1215 // already stored |
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1216 int64_t patientToAvoid; |
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1217 ResourceType type; |
1247 | 1218 bool hasPatientToAvoid = db_.LookupResource(newPatientId, patientToAvoid, type); |
268
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1219 |
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1220 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1221 { |
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1222 throw OrthancException(ErrorCode_InternalError); |
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1223 } |
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1224 |
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1225 // Iteratively select patient to remove until there is enough |
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1226 // space in the DICOM store |
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1227 int64_t patientToRecycle; |
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1228 while (true) |
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1229 { |
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1230 // If other instances of this patient are already in the store, |
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1231 // we must avoid to recycle them |
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1232 bool ok = hasPatientToAvoid ? |
1247 | 1233 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1234 db_.SelectPatientToRecycle(patientToRecycle); | |
269
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1235 |
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1236 if (!ok) |
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1237 { |
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1238 throw OrthancException(ErrorCode_FullStorage); |
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1239 } |
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1240 |
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1241 LOG(INFO) << "Recycling one patient"; |
1247 | 1242 db_.DeleteResource(patientToRecycle); |
269
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1243 |
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1244 if (!IsRecyclingNeeded(instanceSize)) |
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1245 { |
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1246 // OK, we're done |
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1247 break; |
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1248 } |
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1249 } |
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1250 } |
269
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1251 |
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1252 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1253 { |
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1254 boost::mutex::scoped_lock lock(mutex_); |
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1255 maximumPatients_ = count; |
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1256 |
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1257 if (count == 0) |
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1258 { |
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1259 LOG(WARNING) << "No limit on the number of stored patients"; |
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1260 } |
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1261 else |
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1262 { |
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1263 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1264 } |
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1265 |
269
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1266 StandaloneRecycling(); |
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1267 } |
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1268 |
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1269 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1270 { |
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1271 boost::mutex::scoped_lock lock(mutex_); |
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1272 maximumStorageSize_ = size; |
270
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1273 |
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1274 if (size == 0) |
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1275 { |
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1276 LOG(WARNING) << "No limit on the size of the storage area"; |
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1277 } |
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1278 else |
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1279 { |
440
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1280 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1281 } |
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1282 |
269
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1283 StandaloneRecycling(); |
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1284 } |
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1285 |
272
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1286 void ServerIndex::StandaloneRecycling() |
269
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1287 { |
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1288 // WARNING: No mutex here, do not include this as a public method |
278
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1289 Transaction t(*this); |
269
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1290 Recycle(0, ""); |
278
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1291 t.Commit(0); |
269
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1292 } |
272
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1293 |
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1294 |
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1295 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1296 { |
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1297 boost::mutex::scoped_lock lock(mutex_); |
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1298 |
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1299 // Lookup for the requested resource |
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1300 int64_t id; |
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1301 ResourceType type; |
1247 | 1302 if (!db_.LookupResource(publicId, id, type) || |
272
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1303 type != ResourceType_Patient) |
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1304 { |
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1305 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1306 } |
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1307 |
1247 | 1308 return db_.IsProtectedPatient(id); |
272
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1309 } |
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1310 |
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1311 |
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1312 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1313 bool isProtected) |
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1314 { |
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1315 boost::mutex::scoped_lock lock(mutex_); |
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1316 |
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1317 // Lookup for the requested resource |
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1318 int64_t id; |
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1319 ResourceType type; |
1247 | 1320 if (!db_.LookupResource(publicId, id, type) || |
272
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1321 type != ResourceType_Patient) |
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1322 { |
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1323 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1324 } |
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1325 |
1235 | 1326 // No need for a SQLite::ITransaction here, as we only make 1 write to the DB |
1247 | 1327 db_.SetProtectedPatient(id, isProtected); |
272
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1328 |
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1329 if (isProtected) |
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1330 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1331 else |
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1332 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1333 } |
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1334 |
304 | 1335 |
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1336 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1337 const std::string& publicId) |
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1338 { |
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1339 result.clear(); |
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1340 |
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1341 boost::mutex::scoped_lock lock(mutex_); |
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1342 |
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1343 ResourceType type; |
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1344 int64_t resource; |
1247 | 1345 if (!db_.LookupResource(publicId, resource, type)) |
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1346 { |
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1347 throw OrthancException(ErrorCode_UnknownResource); |
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1348 } |
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1349 |
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1350 if (type == ResourceType_Instance) |
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1351 { |
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1352 // An instance cannot have a child |
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1353 throw OrthancException(ErrorCode_BadParameterType); |
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1354 } |
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1355 |
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1356 std::list<int64_t> tmp; |
1247 | 1357 db_.GetChildrenInternalId(tmp, resource); |
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1358 |
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1359 for (std::list<int64_t>::const_iterator |
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1360 it = tmp.begin(); it != tmp.end(); ++it) |
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1361 { |
1247 | 1362 result.push_back(db_.GetPublicId(*it)); |
714
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1363 } |
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1364 } |
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1365 |
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1366 |
304 | 1367 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1368 const std::string& publicId) | |
1369 { | |
1370 result.clear(); | |
1371 | |
1372 boost::mutex::scoped_lock lock(mutex_); | |
1373 | |
1374 ResourceType type; | |
1375 int64_t top; | |
1247 | 1376 if (!db_.LookupResource(publicId, top, type)) |
304 | 1377 { |
1378 throw OrthancException(ErrorCode_UnknownResource); | |
1379 } | |
1380 | |
1381 if (type == ResourceType_Instance) | |
1382 { | |
1383 // The resource is already an instance: Do not go down the hierarchy | |
1384 result.push_back(publicId); | |
1385 return; | |
1386 } | |
1387 | |
1388 std::stack<int64_t> toExplore; | |
1389 toExplore.push(top); | |
1390 | |
1391 std::list<int64_t> tmp; | |
1392 | |
1393 while (!toExplore.empty()) | |
1394 { | |
1395 // Get the internal ID of the current resource | |
1396 int64_t resource = toExplore.top(); | |
1397 toExplore.pop(); | |
1398 | |
1247 | 1399 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1400 { |
1247 | 1401 result.push_back(db_.GetPublicId(resource)); |
304 | 1402 } |
1403 else | |
1404 { | |
1405 // Tag all the children of this resource as to be explored | |
1247 | 1406 db_.GetChildrenInternalId(tmp, resource); |
304 | 1407 for (std::list<int64_t>::const_iterator |
656 | 1408 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1409 { |
1410 toExplore.push(*it); | |
1411 } | |
1412 } | |
1413 } | |
1414 } | |
1415 | |
306
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1416 |
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1417 void ServerIndex::SetMetadata(const std::string& publicId, |
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1418 MetadataType type, |
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1419 const std::string& value) |
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1420 { |
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1421 boost::mutex::scoped_lock lock(mutex_); |
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1422 |
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1423 ResourceType rtype; |
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1424 int64_t id; |
1247 | 1425 if (!db_.LookupResource(publicId, id, rtype)) |
306
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1426 { |
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1427 throw OrthancException(ErrorCode_UnknownResource); |
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1428 } |
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1429 |
1247 | 1430 db_.SetMetadata(id, type, value); |
306
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1431 } |
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1432 |
438 | 1433 |
1434 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1435 MetadataType type) | |
1436 { | |
1437 boost::mutex::scoped_lock lock(mutex_); | |
1438 | |
1439 ResourceType rtype; | |
1440 int64_t id; | |
1247 | 1441 if (!db_.LookupResource(publicId, id, rtype)) |
438 | 1442 { |
1443 throw OrthancException(ErrorCode_UnknownResource); | |
1444 } | |
1445 | |
1247 | 1446 db_.DeleteMetadata(id, type); |
438 | 1447 } |
1448 | |
1449 | |
306
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1450 bool ServerIndex::LookupMetadata(std::string& target, |
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1451 const std::string& publicId, |
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1452 MetadataType type) |
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1453 { |
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1454 boost::mutex::scoped_lock lock(mutex_); |
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1455 |
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1456 ResourceType rtype; |
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1457 int64_t id; |
1247 | 1458 if (!db_.LookupResource(publicId, id, rtype)) |
306
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1459 { |
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1460 throw OrthancException(ErrorCode_UnknownResource); |
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1461 } |
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1462 |
1247 | 1463 return db_.LookupMetadata(target, id, type); |
306
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1464 } |
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1465 |
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1466 |
739 | 1467 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1468 const std::string& publicId) |
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1469 { |
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1470 boost::mutex::scoped_lock lock(mutex_); |
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1471 |
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1472 ResourceType rtype; |
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1473 int64_t id; |
1247 | 1474 if (!db_.LookupResource(publicId, id, rtype)) |
436
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1475 { |
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1476 throw OrthancException(ErrorCode_UnknownResource); |
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1477 } |
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1478 |
1247 | 1479 db_.ListAvailableMetadata(target, id); |
436
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1480 } |
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1481 |
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1482 |
697
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|
1483 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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1484 const std::string& publicId, |
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|
1485 ResourceType expectedType) |
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1486 { |
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1487 boost::mutex::scoped_lock lock(mutex_); |
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1488 |
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1489 ResourceType type; |
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1490 int64_t id; |
1247 | 1491 if (!db_.LookupResource(publicId, id, type) || |
697
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|
1492 expectedType != type) |
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1493 { |
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1494 throw OrthancException(ErrorCode_UnknownResource); |
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1495 } |
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1496 |
1247 | 1497 db_.ListAvailableAttachments(target, id); |
697
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1498 } |
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1499 |
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1500 |
306
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1501 bool ServerIndex::LookupParent(std::string& target, |
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1502 const std::string& publicId) |
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1503 { |
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1504 boost::mutex::scoped_lock lock(mutex_); |
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1505 |
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1506 ResourceType type; |
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1507 int64_t id; |
1247 | 1508 if (!db_.LookupResource(publicId, id, type)) |
306
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1509 { |
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1510 throw OrthancException(ErrorCode_UnknownResource); |
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1511 } |
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1512 |
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1513 int64_t parentId; |
1247 | 1514 if (db_.LookupParent(parentId, id)) |
306
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1515 { |
1247 | 1516 target = db_.GetPublicId(parentId); |
306
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1517 return true; |
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1518 } |
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1519 else |
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1520 { |
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1521 return false; |
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1522 } |
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1523 } |
310 | 1524 |
1525 | |
1526 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1527 { | |
1528 boost::mutex::scoped_lock lock(mutex_); | |
311 | 1529 |
1247 | 1530 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
311 | 1531 |
1532 transaction->Begin(); | |
1237 | 1533 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
311 | 1534 transaction->Commit(); |
1535 | |
1536 return seq; | |
310 | 1537 } |
315 | 1538 |
1539 | |
1540 | |
1541 void ServerIndex::LogChange(ChangeType changeType, | |
1542 const std::string& publicId) | |
1543 { | |
1544 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1545 std::auto_ptr<SQLite::ITransaction> transaction(db_.StartTransaction()); |
315 | 1546 transaction->Begin(); |
1547 | |
1548 int64_t id; | |
1549 ResourceType type; | |
1247 | 1550 if (!db_.LookupResource(publicId, id, type)) |
315 | 1551 { |
1552 throw OrthancException(ErrorCode_UnknownResource); | |
1553 } | |
1554 | |
1237 | 1555 LogChange(id, changeType, type, publicId); |
315 | 1556 |
1557 transaction->Commit(); | |
1558 } | |
413
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1559 |
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1560 |
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1561 void ServerIndex::DeleteChanges() |
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1562 { |
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1563 boost::mutex::scoped_lock lock(mutex_); |
1247 | 1564 db_.ClearTable("Changes"); |
413
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1565 } |
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1566 |
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1567 void ServerIndex::DeleteExportedResources() |
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1568 { |
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1569 boost::mutex::scoped_lock lock(mutex_); |
1247 | 1570 db_.ClearTable("ExportedResources"); |
413
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1571 } |
440
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1572 |
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1573 |
646 | 1574 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1575 /* out */ uint64_t& uncompressedSize, | |
1576 /* out */ unsigned int& countStudies, | |
1577 /* out */ unsigned int& countSeries, | |
1578 /* out */ unsigned int& countInstances, | |
1579 /* in */ int64_t id, | |
1580 /* in */ ResourceType type) | |
440
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|
1581 { |
646 | 1582 std::stack<int64_t> toExplore; |
1583 toExplore.push(id); | |
440
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diff
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|
1584 |
646 | 1585 countInstances = 0; |
1586 countSeries = 0; | |
1587 countStudies = 0; | |
1588 compressedSize = 0; | |
1589 uncompressedSize = 0; | |
440
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diff
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|
1590 |
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diff
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|
1591 while (!toExplore.empty()) |
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diff
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|
1592 { |
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diff
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|
1593 // Get the internal ID of the current resource |
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|
1594 int64_t resource = toExplore.top(); |
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diff
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|
1595 toExplore.pop(); |
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diff
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|
1596 |
1247 | 1597 ResourceType thisType = db_.GetResourceType(resource); |
440
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|
1598 |
702
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delete custom attachment
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diff
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|
1599 std::list<FileContentType> f; |
1247 | 1600 db_.ListAvailableAttachments(f, resource); |
702
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|
1601 |
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diff
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|
1602 for (std::list<FileContentType>::const_iterator |
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diff
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|
1603 it = f.begin(); it != f.end(); ++it) |
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diff
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|
1604 { |
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diff
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|
1605 FileInfo attachment; |
1247 | 1606 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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|
1607 { |
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|
1608 compressedSize += attachment.GetCompressedSize(); |
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diff
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|
1609 uncompressedSize += attachment.GetUncompressedSize(); |
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diff
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|
1610 } |
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diff
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|
1611 } |
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|
1612 |
440
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diff
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|
1613 if (thisType == ResourceType_Instance) |
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diff
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|
1614 { |
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|
1615 countInstances++; |
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|
1616 } |
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diff
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|
1617 else |
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diff
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|
1618 { |
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diff
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|
1619 switch (thisType) |
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diff
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|
1620 { |
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diff
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|
1621 case ResourceType_Study: |
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1622 countStudies++; |
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diff
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|
1623 break; |
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diff
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|
1624 |
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diff
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|
1625 case ResourceType_Series: |
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|
1626 countSeries++; |
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diff
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|
1627 break; |
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diff
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|
1628 |
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diff
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|
1629 default: |
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diff
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|
1630 break; |
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diff
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|
1631 } |
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diff
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|
1632 |
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|
1633 // Tag all the children of this resource as to be explored |
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|
1634 std::list<int64_t> tmp; |
1247 | 1635 db_.GetChildrenInternalId(tmp, resource); |
440
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diff
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|
1636 for (std::list<int64_t>::const_iterator |
656 | 1637 it = tmp.begin(); it != tmp.end(); ++it) |
440
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diff
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|
1638 { |
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|
1639 toExplore.push(*it); |
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|
1640 } |
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diff
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|
1641 } |
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|
1642 } |
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|
1643 |
646 | 1644 if (countStudies == 0) |
1645 { | |
1646 countStudies = 1; | |
1647 } | |
1648 | |
1649 if (countSeries == 0) | |
1650 { | |
1651 countSeries = 1; | |
1652 } | |
1653 } | |
1654 | |
1655 | |
1656 | |
1657 void ServerIndex::GetStatistics(Json::Value& target, | |
1658 const std::string& publicId) | |
1659 { | |
1660 boost::mutex::scoped_lock lock(mutex_); | |
1661 | |
1662 ResourceType type; | |
1663 int64_t top; | |
1247 | 1664 if (!db_.LookupResource(publicId, top, type)) |
646 | 1665 { |
1666 throw OrthancException(ErrorCode_UnknownResource); | |
1667 } | |
1668 | |
1669 uint64_t uncompressedSize; | |
1670 uint64_t compressedSize; | |
1671 unsigned int countStudies; | |
1672 unsigned int countSeries; | |
1673 unsigned int countInstances; | |
1674 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1675 countSeries, countInstances, top, type); | |
1676 | |
440
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diff
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|
1677 target = Json::objectValue; |
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|
1678 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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diff
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|
1679 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
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diff
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|
1680 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
23e5b35e3c5c
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diff
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|
1681 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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diff
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|
1682 |
23e5b35e3c5c
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diff
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|
1683 switch (type) |
23e5b35e3c5c
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diff
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|
1684 { |
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diff
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|
1685 // Do NOT add "break" below this point! |
23e5b35e3c5c
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diff
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|
1686 case ResourceType_Patient: |
23e5b35e3c5c
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diff
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|
1687 target["CountStudies"] = countStudies; |
23e5b35e3c5c
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diff
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|
1688 |
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diff
changeset
|
1689 case ResourceType_Study: |
23e5b35e3c5c
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diff
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|
1690 target["CountSeries"] = countSeries; |
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diff
changeset
|
1691 |
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diff
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|
1692 case ResourceType_Series: |
23e5b35e3c5c
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diff
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|
1693 target["CountInstances"] = countInstances; |
23e5b35e3c5c
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diff
changeset
|
1694 |
23e5b35e3c5c
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diff
changeset
|
1695 case ResourceType_Instance: |
23e5b35e3c5c
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diff
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|
1696 default: |
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diff
changeset
|
1697 break; |
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diff
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|
1698 } |
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diff
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|
1699 } |
511
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diff
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|
1700 |
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|
1701 |
646 | 1702 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1703 /* out */ uint64_t& uncompressedSize, | |
1704 /* out */ unsigned int& countStudies, | |
1705 /* out */ unsigned int& countSeries, | |
1706 /* out */ unsigned int& countInstances, | |
1707 const std::string& publicId) | |
1708 { | |
1709 boost::mutex::scoped_lock lock(mutex_); | |
1710 | |
1711 ResourceType type; | |
1712 int64_t top; | |
1247 | 1713 if (!db_.LookupResource(publicId, top, type)) |
646 | 1714 { |
1715 throw OrthancException(ErrorCode_UnknownResource); | |
1716 } | |
1717 | |
1718 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1719 countSeries, countInstances, top, type); | |
1720 } | |
1721 | |
1722 | |
511
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|
1723 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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|
1724 { |
810
401a9633e492
configuration into a namespace
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diff
changeset
|
1725 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
511
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1726 if (stableAge <= 0) |
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1727 { |
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|
1728 stableAge = 60; |
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1729 } |
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|
1730 |
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|
1731 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1732 |
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changeset
|
1733 while (!that->done_) |
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1734 { |
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|
1735 // Check for stable resources each second |
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|
1736 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1737 |
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changeset
|
1738 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1739 |
511
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|
1740 while (!that->unstableResources_.IsEmpty() && |
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changeset
|
1741 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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|
1742 { |
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|
1743 // This DICOM resource has not received any new instance for |
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|
1744 // some time. It can be considered as stable. |
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1745 |
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changeset
|
1746 UnstableResourcePayload payload; |
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changeset
|
1747 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1748 |
513 | 1749 // Ensure that the resource is still existing before logging the change |
1247 | 1750 if (that->db_.IsExistingResource(id)) |
511
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1751 { |
1177
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1752 switch (payload.GetResourceType()) |
513 | 1753 { |
1177
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1754 case ResourceType_Patient: |
1237 | 1755 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1756 break; |
511
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1757 |
1177
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1758 case ResourceType_Study: |
1237 | 1759 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1760 break; |
511
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1761 |
1177
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1762 case ResourceType_Series: |
1237 | 1763 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1764 break; |
1765 | |
1766 default: | |
1767 throw OrthancException(ErrorCode_InternalError); | |
1768 } | |
1769 | |
1770 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1771 } |
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1772 } |
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1773 } |
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1774 |
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1775 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1776 } |
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1777 |
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1778 |
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1779 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1780 Orthanc::ResourceType type, |
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1781 const std::string& publicId) |
511
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1782 { |
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1783 // WARNING: Before calling this method, "mutex_" must be locked. |
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1784 |
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1785 assert(type == Orthanc::ResourceType_Patient || |
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1786 type == Orthanc::ResourceType_Study || |
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1787 type == Orthanc::ResourceType_Series); |
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1788 |
1177
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1789 UnstableResourcePayload payload(type, publicId); |
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1790 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1791 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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1792 |
1237 | 1793 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1794 } |
521 | 1795 |
1796 | |
1797 | |
1162 | 1798 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1799 const DicomTag& tag, | |
1800 const std::string& value, | |
1801 ResourceType type) | |
615 | 1802 { |
1803 result.clear(); | |
1804 | |
1805 boost::mutex::scoped_lock lock(mutex_); | |
1806 | |
1807 std::list<int64_t> id; | |
1247 | 1808 db_.LookupIdentifier(id, tag, value); |
615 | 1809 |
1810 for (std::list<int64_t>::const_iterator | |
656 | 1811 it = id.begin(); it != id.end(); ++it) |
615 | 1812 { |
1247 | 1813 if (db_.GetResourceType(*it) == type) |
615 | 1814 { |
1247 | 1815 result.push_back(db_.GetPublicId(*it)); |
615 | 1816 } |
1817 } | |
1818 } | |
1819 | |
1820 | |
1162 | 1821 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
1822 const DicomTag& tag, | |
1823 const std::string& value) | |
521 | 1824 { |
1825 result.clear(); | |
1826 | |
1827 boost::mutex::scoped_lock lock(mutex_); | |
1828 | |
1829 std::list<int64_t> id; | |
1247 | 1830 db_.LookupIdentifier(id, tag, value); |
521 | 1831 |
1832 for (std::list<int64_t>::const_iterator | |
656 | 1833 it = id.begin(); it != id.end(); ++it) |
521 | 1834 { |
1247 | 1835 result.push_back(db_.GetPublicId(*it)); |
521 | 1836 } |
1837 } | |
1838 | |
1839 | |
1162 | 1840 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
1841 const std::string& value) | |
521 | 1842 { |
1843 result.clear(); | |
1844 | |
1845 boost::mutex::scoped_lock lock(mutex_); | |
1846 | |
1847 std::list<int64_t> id; | |
1247 | 1848 db_.LookupIdentifier(id, value); |
521 | 1849 |
1850 for (std::list<int64_t>::const_iterator | |
656 | 1851 it = id.begin(); it != id.end(); ++it) |
521 | 1852 { |
1247 | 1853 result.push_back(std::make_pair(db_.GetResourceType(*it), |
1854 db_.GetPublicId(*it))); | |
521 | 1855 } |
1856 } | |
699
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1857 |
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1858 |
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1859 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1860 const std::string& publicId) |
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1861 { |
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1862 boost::mutex::scoped_lock lock(mutex_); |
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1863 |
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1864 Transaction t(*this); |
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1865 |
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1866 ResourceType resourceType; |
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1867 int64_t resourceId; |
1247 | 1868 if (!db_.LookupResource(publicId, resourceId, resourceType)) |
699
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1869 { |
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1870 return StoreStatus_Failure; // Inexistent resource |
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1871 } |
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1872 |
704
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1873 // Remove possible previous attachment |
1247 | 1874 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1875 |
704
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1876 // Locate the patient of the target resource |
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1877 int64_t patientId = resourceId; |
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1878 for (;;) |
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1879 { |
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1880 int64_t parent; |
1247 | 1881 if (db_.LookupParent(parent, patientId)) |
704
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1882 { |
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1883 // We have not reached the patient level yet |
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1884 patientId = parent; |
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1885 } |
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1886 else |
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1887 { |
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1888 // We have reached the patient level |
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1889 break; |
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1890 } |
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1891 } |
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1892 |
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1893 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 1894 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
1895 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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1896 |
1247 | 1897 db_.AddAttachment(resourceId, attachment); |
699
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1898 |
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1899 t.Commit(attachment.GetCompressedSize()); |
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1900 |
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1901 return StoreStatus_Success; |
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1902 } |
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1903 |
702
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1904 |
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1905 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1906 FileContentType type) |
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1907 { |
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1908 boost::mutex::scoped_lock lock(mutex_); |
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1909 |
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1910 Transaction t(*this); |
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1911 |
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1912 ResourceType rtype; |
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1913 int64_t id; |
1247 | 1914 if (!db_.LookupResource(publicId, id, rtype)) |
702
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1915 { |
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1916 throw OrthancException(ErrorCode_UnknownResource); |
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1917 } |
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1918 |
1247 | 1919 db_.DeleteAttachment(id, type); |
702
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1920 |
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1921 t.Commit(0); |
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1922 } |
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1923 |
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1924 |
1002
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1925 bool ServerIndex::GetMetadata(Json::Value& target, |
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1926 const std::string& publicId) |
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1927 { |
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1928 boost::mutex::scoped_lock lock(mutex_); |
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1929 |
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1930 target = Json::objectValue; |
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1931 |
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1932 ResourceType type; |
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1933 int64_t id; |
1247 | 1934 if (!db_.LookupResource(publicId, id, type)) |
1002
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1935 { |
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1936 return false; |
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1937 } |
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1938 |
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1939 std::list<MetadataType> metadata; |
1247 | 1940 db_.ListAvailableMetadata(metadata, id); |
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1941 |
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1942 for (std::list<MetadataType>::const_iterator |
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1943 it = metadata.begin(); it != metadata.end(); it++) |
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1944 { |
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1945 std::string key = EnumerationToString(*it); |
1238 | 1946 |
1947 std::string value; | |
1247 | 1948 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 1949 { |
1950 value.clear(); | |
1951 } | |
1952 | |
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1953 target[key] = value; |
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1954 } |
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1955 |
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1956 return true; |
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1957 } |
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1958 |
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1959 |
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1960 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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1961 const std::string& value) |
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1962 { |
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1963 boost::mutex::scoped_lock lock(mutex_); |
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1964 db_.SetGlobalProperty(property, value); |
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1965 } |
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1966 |
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1967 |
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1968 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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1969 const std::string& defaultValue) |
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1970 { |
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1971 boost::mutex::scoped_lock lock(mutex_); |
1239 | 1972 |
1973 std::string value; | |
1247 | 1974 if (db_.LookupGlobalProperty(value, property)) |
1239 | 1975 { |
1976 return value; | |
1977 } | |
1978 else | |
1979 { | |
1980 return defaultValue; | |
1981 } | |
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1982 } |
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1983 |
0 | 1984 } |