annotate OrthancServer/DicomModification.h @ 2259:8233c92b8226

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date Thu, 02 Feb 2017 21:12:16 +0100
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017 Osimis, Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #include "ParsedDicomFile.h"
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37
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38 namespace Orthanc
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39 {
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40 class DicomModification : public boost::noncopyable
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41 {
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42 /**
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43 * Process:
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44 * (1) Remove private tags
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45 * (2) Remove tags specified by the user
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46 * (3) Replace tags
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47 **/
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48
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49 private:
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50 typedef std::set<DicomTag> SetOfTags;
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51 typedef std::map<DicomTag, Json::Value*> Replacements;
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52 typedef std::map< std::pair<ResourceType, std::string>, std::string> UidMap;
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53
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54 SetOfTags removals_;
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55 Replacements replacements_;
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56 bool removePrivateTags_;
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57 ResourceType level_;
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58 UidMap uidMap_;
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59 SetOfTags privateTagsToKeep_;
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60 bool allowManualIdentifiers_;
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61 bool keepStudyInstanceUid_;
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62 bool keepSeriesInstanceUid_;
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63
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64 void MapDicomIdentifier(ParsedDicomFile& dicom,
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65 ResourceType level);
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66
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67 void MarkNotOrthancAnonymization();
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68
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69 void ClearReplacements();
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70
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71 void RemoveInternal(const DicomTag& tag);
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72
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73 void ReplaceInternal(const DicomTag& tag,
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74 const Json::Value& value);
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75
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76 public:
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77 DicomModification();
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78
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79 ~DicomModification();
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80
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81 void Keep(const DicomTag& tag);
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82
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83 void Remove(const DicomTag& tag);
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84
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85 bool IsRemoved(const DicomTag& tag) const;
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86
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87 void Replace(const DicomTag& tag,
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88 const Json::Value& value, // Encoded using UTF-8
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89 bool safeForAnonymization = false);
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90
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91 bool IsReplaced(const DicomTag& tag) const;
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92
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93 const Json::Value& GetReplacement(const DicomTag& tag) const;
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95 std::string GetReplacementAsString(const DicomTag& tag) const;
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96
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97 void SetRemovePrivateTags(bool removed);
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98
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99 bool ArePrivateTagsRemoved() const
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100 {
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101 return removePrivateTags_;
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102 }
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103
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104 void SetLevel(ResourceType level);
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105
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106 ResourceType GetLevel() const
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107 {
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108 return level_;
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109 }
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110
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111 void SetupAnonymization();
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112
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113 void Apply(ParsedDicomFile& toModify);
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115 void SetAllowManualIdentifiers(bool check)
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116 {
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117 allowManualIdentifiers_ = check;
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118 }
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119
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120 bool AreAllowManualIdentifiers() const
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121 {
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122 return allowManualIdentifiers_;
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123 }
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124 };
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125 }