Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 788:7ebe4bf87196
refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 05 May 2014 18:39:36 +0200 |
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children | 381f90e2b69d |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "OrthancRestApi.h" |
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34 |
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35 #include "../DicomModification.h" |
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36 |
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37 #include <glog/logging.h> |
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38 |
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39 namespace Orthanc |
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40 { |
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41 // Modification of DICOM instances ------------------------------------------ |
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42 |
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43 enum TagOperation |
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44 { |
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45 TagOperation_Keep, |
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46 TagOperation_Remove |
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47 }; |
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48 |
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49 static void ParseListOfTags(DicomModification& target, |
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50 const Json::Value& query, |
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51 TagOperation operation) |
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52 { |
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53 if (!query.isArray()) |
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54 { |
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55 throw OrthancException(ErrorCode_BadRequest); |
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56 } |
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57 |
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58 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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59 { |
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60 std::string name = query[i].asString(); |
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61 |
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62 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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63 |
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64 switch (operation) |
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65 { |
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66 case TagOperation_Keep: |
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67 target.Keep(tag); |
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68 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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69 break; |
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70 |
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71 case TagOperation_Remove: |
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72 target.Remove(tag); |
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73 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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74 break; |
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75 |
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76 default: |
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77 throw OrthancException(ErrorCode_InternalError); |
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78 } |
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79 } |
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80 } |
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81 |
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82 |
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83 static void ParseReplacements(DicomModification& target, |
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84 const Json::Value& replacements) |
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85 { |
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86 if (!replacements.isObject()) |
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87 { |
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88 throw OrthancException(ErrorCode_BadRequest); |
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89 } |
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90 |
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91 Json::Value::Members members = replacements.getMemberNames(); |
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92 for (size_t i = 0; i < members.size(); i++) |
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93 { |
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94 const std::string& name = members[i]; |
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95 std::string value = replacements[name].asString(); |
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96 |
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97 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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98 target.Replace(tag, value); |
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99 |
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100 VLOG(1) << "Replace: " << name << " " << tag << " == " << value << std::endl; |
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101 } |
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102 } |
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103 |
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104 |
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105 static std::string GeneratePatientName(ServerContext& context) |
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106 { |
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107 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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108 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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109 } |
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110 |
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111 |
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112 static bool ParseModifyRequest(DicomModification& target, |
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113 const RestApi::PostCall& call) |
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114 { |
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115 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' |
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116 |
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117 Json::Value request; |
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118 if (call.ParseJsonRequest(request) && request.isObject()) |
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119 { |
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120 if (request.isMember("RemovePrivateTags")) |
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121 { |
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122 target.SetRemovePrivateTags(true); |
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123 } |
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124 |
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125 if (request.isMember("Remove")) |
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126 { |
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127 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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128 } |
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129 |
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130 if (request.isMember("Replace")) |
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131 { |
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132 ParseReplacements(target, request["Replace"]); |
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133 } |
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134 |
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135 return true; |
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136 } |
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137 else |
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138 { |
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139 return false; |
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140 } |
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141 } |
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142 |
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143 |
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144 static bool ParseAnonymizationRequest(DicomModification& target, |
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145 RestApi::PostCall& call) |
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146 { |
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147 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm |
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148 |
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149 target.SetupAnonymization(); |
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150 std::string patientName = target.GetReplacement(DICOM_TAG_PATIENT_NAME); |
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151 |
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152 Json::Value request; |
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153 if (call.ParseJsonRequest(request) && request.isObject()) |
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154 { |
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155 if (request.isMember("KeepPrivateTags")) |
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156 { |
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157 target.SetRemovePrivateTags(false); |
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158 } |
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159 |
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160 if (request.isMember("Remove")) |
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161 { |
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162 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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163 } |
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164 |
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165 if (request.isMember("Replace")) |
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166 { |
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167 ParseReplacements(target, request["Replace"]); |
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168 } |
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169 |
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170 if (request.isMember("Keep")) |
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171 { |
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172 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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173 } |
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174 |
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175 if (target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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176 { |
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177 // Overwrite the random Patient's Name by one that is more |
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178 // user-friendly (provided none was specified by the user) |
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179 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call))); |
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180 } |
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181 |
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182 return true; |
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183 } |
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184 else |
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185 { |
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186 return false; |
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187 } |
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188 } |
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189 |
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190 |
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191 static void AnonymizeOrModifyInstance(DicomModification& modification, |
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192 RestApi::PostCall& call) |
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193 { |
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194 std::string id = call.GetUriComponent("id", ""); |
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195 |
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196 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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197 |
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198 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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199 modification.Apply(*modified); |
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200 modified->Answer(call.GetOutput()); |
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201 } |
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202 |
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203 |
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204 static void AnonymizeOrModifyResource(DicomModification& modification, |
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205 MetadataType metadataType, |
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206 ChangeType changeType, |
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207 ResourceType resourceType, |
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208 RestApi::PostCall& call) |
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209 { |
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210 bool isFirst = true; |
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211 Json::Value result(Json::objectValue); |
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212 |
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213 ServerContext& context = OrthancRestApi::GetContext(call); |
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214 |
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215 typedef std::list<std::string> Instances; |
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216 Instances instances; |
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217 std::string id = call.GetUriComponent("id", ""); |
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218 context.GetIndex().GetChildInstances(instances, id); |
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219 |
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220 if (instances.empty()) |
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221 { |
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222 return; |
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223 } |
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224 |
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225 |
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226 /** |
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227 * Loop over all the instances of the resource. |
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228 **/ |
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229 |
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230 for (Instances::const_iterator it = instances.begin(); |
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231 it != instances.end(); ++it) |
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232 { |
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233 LOG(INFO) << "Modifying instance " << *it; |
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234 |
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235 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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236 |
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237 try |
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238 { |
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239 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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240 } |
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241 catch (OrthancException&) |
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242 { |
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243 // This child instance has been removed in between |
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244 continue; |
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245 } |
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246 |
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247 ParsedDicomFile& original = locker->GetDicom(); |
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248 DicomInstanceHasher originalHasher = original.GetHasher(); |
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249 |
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250 |
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251 /** |
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252 * Compute the resulting DICOM instance and store it into the Orthanc store. |
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253 **/ |
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254 |
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255 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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256 modification.Apply(*modified); |
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257 |
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258 std::string modifiedInstance; |
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259 if (context.Store(modifiedInstance, modified->GetDicom()) != StoreStatus_Success) |
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260 { |
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261 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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262 return; |
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263 } |
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264 |
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265 |
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266 /** |
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267 * Record metadata information (AnonymizedFrom/ModifiedFrom). |
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268 **/ |
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269 |
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270 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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271 |
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272 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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273 { |
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274 context.GetIndex().SetMetadata(modifiedHasher.HashSeries(), |
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275 metadataType, originalHasher.HashSeries()); |
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276 } |
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277 |
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278 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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279 { |
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280 context.GetIndex().SetMetadata(modifiedHasher.HashStudy(), |
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281 metadataType, originalHasher.HashStudy()); |
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282 } |
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283 |
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284 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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285 { |
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286 context.GetIndex().SetMetadata(modifiedHasher.HashPatient(), |
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287 metadataType, originalHasher.HashPatient()); |
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288 } |
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289 |
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290 assert(*it == originalHasher.HashInstance()); |
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291 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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292 context.GetIndex().SetMetadata(modifiedInstance, metadataType, *it); |
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293 |
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294 |
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295 /** |
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296 * Compute the JSON object that is returned by the REST call. |
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297 **/ |
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298 |
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299 if (isFirst) |
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300 { |
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301 std::string newId; |
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302 |
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303 switch (resourceType) |
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304 { |
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305 case ResourceType_Series: |
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306 newId = modifiedHasher.HashSeries(); |
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307 break; |
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308 |
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309 case ResourceType_Study: |
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310 newId = modifiedHasher.HashStudy(); |
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311 break; |
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312 |
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313 case ResourceType_Patient: |
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314 newId = modifiedHasher.HashPatient(); |
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315 break; |
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316 |
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317 default: |
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318 throw OrthancException(ErrorCode_InternalError); |
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319 } |
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320 |
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321 result["Type"] = EnumerationToString(resourceType); |
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322 result["ID"] = newId; |
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323 result["Path"] = GetBasePath(resourceType, newId); |
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324 result["PatientID"] = modifiedHasher.HashPatient(); |
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325 isFirst = false; |
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326 } |
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327 } |
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328 |
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329 call.GetOutput().AnswerJson(result); |
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330 } |
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331 |
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332 |
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333 |
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334 static void ModifyInstance(RestApi::PostCall& call) |
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335 { |
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336 DicomModification modification; |
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337 |
788 | 338 // TODO : modification.SetLevel(ResourceType_Series); ????? |
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339 |
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340 if (ParseModifyRequest(modification, call)) |
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341 { |
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342 AnonymizeOrModifyInstance(modification, call); |
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343 } |
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344 } |
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345 |
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346 |
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347 static void AnonymizeInstance(RestApi::PostCall& call) |
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348 { |
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349 DicomModification modification; |
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350 |
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351 if (ParseAnonymizationRequest(modification, call)) |
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352 { |
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353 AnonymizeOrModifyInstance(modification, call); |
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354 } |
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355 } |
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356 |
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357 |
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358 template <enum ChangeType changeType, |
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359 enum ResourceType resourceType> |
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360 static void ModifyResource(RestApi::PostCall& call) |
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361 { |
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362 DicomModification modification; |
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363 |
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364 switch (resourceType) |
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365 { |
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366 case ResourceType_Series: |
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368 break; |
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369 |
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370 case ResourceType_Study: |
788 | 371 modification.SetLevel(ResourceType_Study); |
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372 break; |
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373 |
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374 case ResourceType_Patient: |
788 | 375 modification.SetLevel(ResourceType_Patient); |
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376 break; |
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377 |
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378 default: |
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379 throw OrthancException(ErrorCode_InternalError); |
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380 } |
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381 |
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382 if (ParseModifyRequest(modification, call)) |
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383 { |
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384 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, |
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385 changeType, resourceType, call); |
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386 } |
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387 } |
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388 |
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389 |
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390 template <enum ChangeType changeType, |
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391 enum ResourceType resourceType> |
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392 static void AnonymizeResource(RestApi::PostCall& call) |
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393 { |
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394 DicomModification modification; |
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395 |
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396 if (ParseAnonymizationRequest(modification, call)) |
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397 { |
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398 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, |
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399 changeType, resourceType, call); |
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400 } |
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401 } |
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402 |
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403 |
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404 void OrthancRestApi::RegisterAnonymizeModify() |
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405 { |
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406 Register("/instances/{id}/modify", ModifyInstance); |
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407 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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408 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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409 //Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
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410 |
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411 Register("/instances/{id}/anonymize", AnonymizeInstance); |
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412 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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413 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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414 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
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415 } |
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416 } |