Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancInitialization.cpp @ 4504:7d1eabfac6e0
removed cached dicom-as-json from DicomInstanceToStore
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Wed, 10 Feb 2021 11:29:53 +0100 |
parents | 7b99e8bb8246 |
children | 3badc205cb4c |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
0 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
136 | 11 * |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
0 | 23 * |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "PrecompiledHeadersServer.h" |
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35 |
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36 #if defined(_WIN32) |
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37 // "Please include winsock2.h before windows.h" |
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38 # include <winsock2.h> |
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39 #endif |
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40 |
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41 #if !defined(HAVE_MALLOPT) |
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42 # error Macro HAVE_MALLOPT must be defined |
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43 #endif |
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44 |
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45 #if HAVE_MALLOPT == 1 |
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46 # include <malloc.h> |
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47 #endif |
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48 |
62 | 49 #include "OrthancInitialization.h" |
0 | 50 |
4045 | 51 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
52 #include "../../OrthancFramework/Sources/FileStorage/FilesystemStorage.h" | |
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53 #include "../../OrthancFramework/Sources/HttpClient.h" |
4045 | 54 #include "../../OrthancFramework/Sources/Logging.h" |
55 #include "../../OrthancFramework/Sources/OrthancException.h" | |
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56 |
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57 #include "Database/SQLiteDatabaseWrapper.h" |
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58 #include "OrthancConfiguration.h" |
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60 #include <OrthancServerResources.h> |
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61 |
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62 #include <dcmtk/dcmnet/dul.h> // For dcmDisableGethostbyaddr() |
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63 #include <dcmtk/dcmnet/diutil.h> // For DCM_dcmnetLogger |
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64 |
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65 |
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66 |
62 | 67 namespace Orthanc |
0 | 68 { |
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69 static void RegisterUserMetadata(const Json::Value& config) |
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70 { |
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71 if (config.isMember("UserMetadata")) |
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72 { |
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73 const Json::Value& parameter = config["UserMetadata"]; |
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74 |
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75 Json::Value::Members members = parameter.getMemberNames(); |
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76 for (size_t i = 0; i < members.size(); i++) |
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77 { |
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78 const std::string& name = members[i]; |
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79 |
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80 if (!parameter[name].isInt()) |
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81 { |
2955 | 82 throw OrthancException(ErrorCode_BadParameterType, |
83 "Not a number in this user-defined metadata: " + name); | |
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84 } |
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85 |
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86 int metadata = parameter[name].asInt(); |
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87 |
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88 LOG(INFO) << "Registering user-defined metadata: " << name << " (index " |
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89 << metadata << ")"; |
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90 |
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91 try |
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92 { |
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93 RegisterUserMetadata(metadata, name); |
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94 } |
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95 catch (OrthancException&) |
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96 { |
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97 LOG(ERROR) << "Cannot register this user-defined metadata: " << name; |
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98 throw; |
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99 } |
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100 } |
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101 } |
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102 } |
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103 |
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104 |
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105 static void RegisterUserContentType(const Json::Value& config) |
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106 { |
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107 if (config.isMember("UserContentType")) |
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108 { |
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109 const Json::Value& parameter = config["UserContentType"]; |
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110 |
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111 Json::Value::Members members = parameter.getMemberNames(); |
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112 for (size_t i = 0; i < members.size(); i++) |
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113 { |
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114 const std::string& name = members[i]; |
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115 std::string mime = MIME_BINARY; |
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116 |
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117 const Json::Value& value = parameter[name]; |
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118 int contentType; |
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119 |
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120 if (value.isArray() && |
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121 value.size() == 2 && |
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122 value[0].isInt() && |
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123 value[1].isString()) |
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124 { |
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125 contentType = value[0].asInt(); |
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126 mime = value[1].asString(); |
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127 } |
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128 else if (value.isInt()) |
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129 { |
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130 contentType = value.asInt(); |
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131 } |
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132 else |
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133 { |
2955 | 134 throw OrthancException(ErrorCode_BadParameterType, |
135 "Not a number in this user-defined attachment type: " + name); | |
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136 } |
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137 |
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138 LOG(INFO) << "Registering user-defined attachment type: " << name << " (index " |
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139 << contentType << ") with MIME type \"" << mime << "\""; |
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140 |
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141 try |
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142 { |
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143 RegisterUserContentType(contentType, name, mime); |
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144 } |
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145 catch (OrthancException&) |
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146 { |
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147 throw; |
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148 } |
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149 } |
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150 } |
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151 } |
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152 |
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153 |
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154 static void LoadCustomDictionary(const Json::Value& configuration) |
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155 { |
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156 if (configuration.type() != Json::objectValue || |
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157 !configuration.isMember("Dictionary") || |
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158 configuration["Dictionary"].type() != Json::objectValue) |
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159 { |
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160 return; |
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161 } |
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162 |
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163 Json::Value::Members tags(configuration["Dictionary"].getMemberNames()); |
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164 |
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165 for (Json::Value::ArrayIndex i = 0; i < tags.size(); i++) |
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166 { |
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167 const Json::Value& content = configuration["Dictionary"][tags[i]]; |
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168 if (content.type() != Json::arrayValue || |
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169 content.size() < 2 || |
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170 content.size() > 5 || |
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171 content[0].type() != Json::stringValue || |
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172 content[1].type() != Json::stringValue || |
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173 (content.size() >= 3 && content[2].type() != Json::intValue) || |
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174 (content.size() >= 4 && content[3].type() != Json::intValue) || |
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175 (content.size() >= 5 && content[4].type() != Json::stringValue)) |
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176 { |
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177 throw OrthancException(ErrorCode_BadFileFormat, "The definition of the '" + tags[i] + "' dictionary entry is invalid."); |
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178 } |
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179 |
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180 DicomTag tag(FromDcmtkBridge::ParseTag(tags[i])); |
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181 ValueRepresentation vr = StringToValueRepresentation(content[0].asString(), true); |
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182 std::string name = content[1].asString(); |
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183 unsigned int minMultiplicity = (content.size() >= 2) ? content[2].asUInt() : 1; |
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184 unsigned int maxMultiplicity = (content.size() >= 3) ? content[3].asUInt() : 1; |
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185 std::string privateCreator = (content.size() >= 4) ? content[4].asString() : ""; |
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186 |
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187 FromDcmtkBridge::RegisterDictionaryTag(tag, vr, name, minMultiplicity, maxMultiplicity, privateCreator); |
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188 } |
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189 } |
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190 |
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191 |
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192 static void ConfigurePkcs11(const Json::Value& config) |
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193 { |
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194 if (config.type() != Json::objectValue || |
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195 !config.isMember("Module") || |
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196 config["Module"].type() != Json::stringValue) |
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197 { |
2955 | 198 throw OrthancException(ErrorCode_BadFileFormat, |
199 "No path to the PKCS#11 module (DLL or .so) is provided " | |
200 "for HTTPS client authentication"); | |
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201 } |
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202 |
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203 std::string pin; |
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204 if (config.isMember("Pin")) |
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205 { |
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206 if (config["Pin"].type() == Json::stringValue) |
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207 { |
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208 pin = config["Pin"].asString(); |
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209 } |
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210 else |
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211 { |
2955 | 212 throw OrthancException(ErrorCode_BadFileFormat, |
213 "The PIN number in the PKCS#11 configuration must be a string"); | |
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214 } |
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215 } |
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216 |
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217 bool verbose = false; |
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218 if (config.isMember("Verbose")) |
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219 { |
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220 if (config["Verbose"].type() == Json::booleanValue) |
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221 { |
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222 verbose = config["Verbose"].asBool(); |
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223 } |
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224 else |
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225 { |
2955 | 226 throw OrthancException(ErrorCode_BadFileFormat, |
227 "The Verbose option in the PKCS#11 configuration must be a Boolean"); | |
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228 } |
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229 } |
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230 |
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231 HttpClient::InitializePkcs11(config["Module"].asString(), pin, verbose); |
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232 } |
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233 |
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234 |
1656 | 235 |
62 | 236 void OrthancInitialize(const char* configurationFile) |
0 | 237 { |
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238 static const char* LOCALE = "Locale"; |
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239 static const char* PKCS11 = "Pkcs11"; |
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240 static const char* DEFAULT_ENCODING = "DefaultEncoding"; |
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241 static const char* MALLOC_ARENA_MAX = "MallocArenaMax"; |
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242 |
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243 OrthancConfiguration::WriterLock lock; |
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244 |
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245 InitializeServerEnumerations(); |
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246 |
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247 // Read the user-provided configuration |
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248 lock.GetConfiguration().Read(configurationFile); |
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249 |
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250 { |
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251 std::string locale; |
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252 |
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253 if (lock.GetJson().isMember(LOCALE)) |
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254 { |
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255 locale = lock.GetConfiguration().GetStringParameter(LOCALE, ""); |
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256 } |
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257 |
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258 bool loadPrivate = lock.GetConfiguration().GetBooleanParameter("LoadPrivateDictionary", true); |
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259 Orthanc::InitializeFramework(locale, loadPrivate); |
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260 } |
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261 |
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262 // The Orthanc framework is now initialized |
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263 |
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264 if (lock.GetJson().isMember(DEFAULT_ENCODING)) |
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265 { |
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266 std::string encoding = lock.GetConfiguration().GetStringParameter(DEFAULT_ENCODING, ""); |
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267 SetDefaultDicomEncoding(StringToEncoding(encoding.c_str())); |
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268 } |
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269 else |
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270 { |
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271 SetDefaultDicomEncoding(ORTHANC_DEFAULT_DICOM_ENCODING); |
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272 } |
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273 |
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274 if (lock.GetJson().isMember(PKCS11)) |
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275 { |
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276 ConfigurePkcs11(lock.GetJson()[PKCS11]); |
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277 } |
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278 |
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279 RegisterUserMetadata(lock.GetJson()); |
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280 RegisterUserContentType(lock.GetJson()); |
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281 |
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282 LoadCustomDictionary(lock.GetJson()); |
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283 |
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284 lock.GetConfiguration().RegisterFont(ServerResources::FONT_UBUNTU_MONO_BOLD_16); |
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285 |
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286 #if HAVE_MALLOPT == 1 |
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287 // New in Orthanc 1.8.2 |
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288 // https://book.orthanc-server.com/faq/scalability.html#controlling-memory-usage |
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289 unsigned int maxArena = lock.GetConfiguration().GetUnsignedIntegerParameter(MALLOC_ARENA_MAX, 5); |
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290 if (maxArena != 0) |
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291 { |
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292 // https://man7.org/linux/man-pages/man3/mallopt.3.html |
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293 LOG(INFO) << "Calling mallopt(M_ARENA_MAX, " << maxArena << ")"; |
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294 if (mallopt(M_ARENA_MAX, maxArena) != 1 /* success */) |
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295 { |
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296 throw OrthancException(ErrorCode_InternalError, "The call to mallopt(M_ARENA_MAX, " + |
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297 boost::lexical_cast<std::string>(maxArena) + ") has failed"); |
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298 } |
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299 } |
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300 #else |
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301 if (lock.GetJson().isMember(MALLOC_ARENA_MAX)) |
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302 { |
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303 LOG(INFO) << "Your platform does not support mallopt(), ignoring configuration option \"" |
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304 << MALLOC_ARENA_MAX << "\""; |
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305 } |
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306 #endif |
0 | 307 } |
308 | |
309 | |
310 | |
62 | 311 void OrthancFinalize() |
0 | 312 { |
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313 OrthancConfiguration::WriterLock lock; |
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314 Orthanc::FinalizeFramework(); |
0 | 315 } |
316 | |
317 | |
1274 | 318 static IDatabaseWrapper* CreateSQLiteWrapper() |
319 { | |
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320 OrthancConfiguration::ReaderLock lock; |
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321 |
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322 std::string storageDirectoryStr = |
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323 lock.GetConfiguration().GetStringParameter("StorageDirectory", "OrthancStorage"); |
1274 | 324 |
325 // Open the database | |
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326 boost::filesystem::path indexDirectory = lock.GetConfiguration().InterpretStringParameterAsPath( |
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327 lock.GetConfiguration().GetStringParameter("IndexDirectory", storageDirectoryStr)); |
1274 | 328 |
329 LOG(WARNING) << "SQLite index directory: " << indexDirectory; | |
330 | |
331 try | |
332 { | |
333 boost::filesystem::create_directories(indexDirectory); | |
334 } | |
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335 catch (boost::filesystem::filesystem_error&) |
1274 | 336 { |
337 } | |
338 | |
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339 return new SQLiteDatabaseWrapper(indexDirectory.string() + "/index"); |
1274 | 340 } |
341 | |
342 | |
343 namespace | |
344 { | |
345 // Anonymous namespace to avoid clashes between compilation modules | |
346 | |
347 class FilesystemStorageWithoutDicom : public IStorageArea | |
348 { | |
349 private: | |
350 FilesystemStorage storage_; | |
351 | |
352 public: | |
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353 FilesystemStorageWithoutDicom(const std::string& path, |
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354 bool fsyncOnWrite) : |
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355 storage_(path, fsyncOnWrite) |
1274 | 356 { |
357 } | |
358 | |
359 virtual void Create(const std::string& uuid, | |
360 const void* content, | |
361 size_t size, | |
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362 FileContentType type) ORTHANC_OVERRIDE |
1274 | 363 { |
364 if (type != FileContentType_Dicom) | |
365 { | |
366 storage_.Create(uuid, content, size, type); | |
367 } | |
368 } | |
369 | |
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370 virtual IMemoryBuffer* Read(const std::string& uuid, |
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371 FileContentType type) ORTHANC_OVERRIDE |
1274 | 372 { |
373 if (type != FileContentType_Dicom) | |
374 { | |
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375 return storage_.Read(uuid, type); |
1274 | 376 } |
377 else | |
378 { | |
379 throw OrthancException(ErrorCode_UnknownResource); | |
380 } | |
381 } | |
382 | |
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383 virtual IMemoryBuffer* ReadRange(const std::string& uuid, |
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384 FileContentType type, |
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385 uint64_t start /* inclusive */, |
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386 uint64_t end /* exclusive */) ORTHANC_OVERRIDE |
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387 { |
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388 if (type != FileContentType_Dicom) |
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389 { |
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390 return storage_.ReadRange(uuid, type, start, end); |
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391 } |
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392 else |
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393 { |
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394 throw OrthancException(ErrorCode_UnknownResource); |
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395 } |
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396 } |
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397 |
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398 virtual bool HasReadRange() const ORTHANC_OVERRIDE |
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399 { |
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400 return storage_.HasReadRange(); |
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401 } |
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402 |
1274 | 403 virtual void Remove(const std::string& uuid, |
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404 FileContentType type) ORTHANC_OVERRIDE |
1274 | 405 { |
406 if (type != FileContentType_Dicom) | |
407 { | |
408 storage_.Remove(uuid, type); | |
409 } | |
410 } | |
411 }; | |
412 } | |
413 | |
414 | |
415 static IStorageArea* CreateFilesystemStorage() | |
416 { | |
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417 OrthancConfiguration::ReaderLock lock; |
1274 | 418 |
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419 std::string storageDirectoryStr = |
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420 lock.GetConfiguration().GetStringParameter("StorageDirectory", "OrthancStorage"); |
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421 |
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422 boost::filesystem::path storageDirectory = |
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423 lock.GetConfiguration().InterpretStringParameterAsPath(storageDirectoryStr); |
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424 |
1274 | 425 LOG(WARNING) << "Storage directory: " << storageDirectory; |
426 | |
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427 // New in Orthanc 1.7.4 |
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428 bool fsyncOnWrite = lock.GetConfiguration().GetBooleanParameter("SyncStorageArea", true); |
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429 |
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430 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true)) |
1274 | 431 { |
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432 return new FilesystemStorage(storageDirectory.string(), fsyncOnWrite); |
1274 | 433 } |
434 else | |
435 { | |
436 LOG(WARNING) << "The DICOM files will not be stored, Orthanc running in index-only mode"; | |
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437 return new FilesystemStorageWithoutDicom(storageDirectory.string(), fsyncOnWrite); |
1274 | 438 } |
439 } | |
440 | |
441 | |
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442 IDatabaseWrapper* CreateDatabaseWrapper() |
1274 | 443 { |
444 return CreateSQLiteWrapper(); | |
445 } | |
446 | |
447 | |
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448 IStorageArea* CreateStorageArea() |
1274 | 449 { |
450 return CreateFilesystemStorage(); | |
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451 } |
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452 |
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453 |
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454 static void SetDcmtkVerbosity(Verbosity verbosity) |
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455 { |
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456 // INFO_LOG_LEVEL was the DCMTK log level in Orthanc <= 1.8.0 |
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457 // https://support.dcmtk.org/docs-dcmrt/classOFLogger.html#ae20bf2616f15313c1f089da2eefb8245 |
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458 |
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459 OFLogger::LogLevel dataLevel, networkLevel; |
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460 |
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461 switch (verbosity) |
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462 { |
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463 case Verbosity_Default: |
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464 // Turn off logging in DCMTK core |
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465 dataLevel = OFLogger::OFF_LOG_LEVEL; |
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466 networkLevel = OFLogger::OFF_LOG_LEVEL; |
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467 break; |
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468 |
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469 case Verbosity_Verbose: |
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470 dataLevel = OFLogger::INFO_LOG_LEVEL; |
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471 networkLevel = OFLogger::INFO_LOG_LEVEL; |
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472 break; |
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473 |
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474 case Verbosity_Trace: |
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475 dataLevel = OFLogger::INFO_LOG_LEVEL; // DEBUG here makes DCMTK too verbose to be useful |
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476 networkLevel = OFLogger::DEBUG_LOG_LEVEL; |
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477 break; |
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478 |
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479 default: |
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480 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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481 } |
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482 |
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483 OFLog::configure(dataLevel); |
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484 assert(dcmtk::log4cplus::Logger::getRoot().getChainedLogLevel() == dataLevel); |
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485 |
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486 DCM_dcmdataLogger.setLogLevel(dataLevel); // This seems to be implied by "OFLog::configure()" |
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487 DCM_dcmnetLogger.setLogLevel(networkLevel); // This will display PDU in DICOM networking |
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488 } |
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489 |
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490 |
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491 void SetGlobalVerbosity(Verbosity verbosity) |
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492 { |
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493 SetDcmtkVerbosity(verbosity); |
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494 |
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495 switch (verbosity) |
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496 { |
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497 case Verbosity_Default: |
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498 Logging::EnableInfoLevel(false); |
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499 Logging::EnableTraceLevel(false); |
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500 break; |
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501 |
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502 case Verbosity_Verbose: |
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503 Logging::EnableInfoLevel(true); |
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504 Logging::EnableTraceLevel(false); |
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505 break; |
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506 |
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507 case Verbosity_Trace: |
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508 Logging::EnableInfoLevel(true); |
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509 Logging::EnableTraceLevel(true); |
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510 break; |
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511 |
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512 default: |
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513 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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514 } |
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515 } |
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516 |
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517 |
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518 Verbosity GetGlobalVerbosity() |
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519 { |
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520 if (Logging::IsTraceLevelEnabled()) |
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521 { |
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522 return Verbosity_Trace; |
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523 } |
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524 else if (Logging::IsInfoLevelEnabled()) |
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525 { |
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526 return Verbosity_Verbose; |
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527 } |
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528 else |
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529 { |
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530 return Verbosity_Default; |
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531 } |
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532 } |
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533 |
0034f855c023
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534 |
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535 void SetCategoryVerbosity(Logging::LogCategory category, |
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536 Verbosity verbosity) |
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537 { |
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538 switch (verbosity) |
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539 { |
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540 case Verbosity_Default: |
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541 Logging::SetCategoryEnabled(Logging::LogLevel_INFO, category, false); |
0034f855c023
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542 Logging::SetCategoryEnabled(Logging::LogLevel_TRACE, category, false); |
0034f855c023
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543 break; |
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544 |
0034f855c023
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545 case Verbosity_Verbose: |
0034f855c023
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546 Logging::SetCategoryEnabled(Logging::LogLevel_INFO, category, true); |
0034f855c023
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547 Logging::SetCategoryEnabled(Logging::LogLevel_TRACE, category, false); |
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
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548 break; |
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549 |
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550 case Verbosity_Trace: |
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551 Logging::SetCategoryEnabled(Logging::LogLevel_INFO, category, true); |
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552 Logging::SetCategoryEnabled(Logging::LogLevel_TRACE, category, true); |
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553 break; |
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554 |
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555 default: |
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556 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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557 } |
4280
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SetDcmtkVerbosity()
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558 |
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559 if (category == Logging::LogCategory_DICOM) |
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560 { |
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561 SetDcmtkVerbosity(verbosity); |
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562 } |
4273
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563 } |
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564 |
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565 |
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566 Verbosity GetCategoryVerbosity(Logging::LogCategory category) |
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567 { |
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568 if (Logging::IsCategoryEnabled(Logging::LogLevel_TRACE, category)) |
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569 { |
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570 return Verbosity_Trace; |
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571 } |
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572 else if (Logging::IsCategoryEnabled(Logging::LogLevel_INFO, category)) |
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573 { |
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574 return Verbosity_Verbose; |
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575 } |
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576 else |
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577 { |
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578 return Verbosity_Default; |
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579 } |
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580 } |
0 | 581 } |