Mercurial > hg > orthanc

annotate OrthancFramework/Sources/DicomParsing/ParsedDicomDir.cpp @ 5311:79fa77e9fa0d am-experimental

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merge default -> am-experimental
author Alain Mazy <am@osimis.io>
date Fri, 16 Jun 2023 09:26:33 +0200
parents 0ea402b4d901
children 48b8dae6dc77
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU Lesser General Public License
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10 * as published by the Free Software Foundation, either version 3 of
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11 * the License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * Lesser General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU Lesser General Public
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19 * License along with this program. If not, see
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20 * <http://www.gnu.org/licenses/>.
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21 **/
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22
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23
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24 #include "../PrecompiledHeaders.h"
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25 #include "ParsedDicomDir.h"
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26
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27 #include "../Compatibility.h"
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28 #include "../OrthancException.h"
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29 #include "ParsedDicomFile.h"
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30 #include "FromDcmtkBridge.h"
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31
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32 #include <dcmtk/dcmdata/dcdeftag.h>
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33
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34
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35 namespace Orthanc
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36 {
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37 void ParsedDicomDir::Clear()
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38 {
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39 for (size_t i = 0; i < content_.size(); i++)
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40 {
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41 assert(content_[i] != NULL);
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42 delete content_[i];
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43 }
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44 }
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46
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47 bool ParsedDicomDir::LookupIndexOfOffset(size_t& target,
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48 unsigned int offset) const
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49 {
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50 if (offset == 0)
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51 {
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52 return false;
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53 }
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55 OffsetToIndex::const_iterator found = offsetToIndex_.find(offset);
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56 if (found == offsetToIndex_.end())
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57 {
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58 // Error in the algorithm that computes the offsets
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59 throw OrthancException(ErrorCode_InternalError);
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60 }
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61 else
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62 {
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63 target = found->second;
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64 return true;
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65 }
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66 }
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67
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68
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69 ParsedDicomDir::ParsedDicomDir(const std::string& content)
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70 {
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71 ParsedDicomFile dicom(content);
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72
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73 DcmSequenceOfItems* sequence = NULL;
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74 if (dicom.GetDcmtkObject().getDataset() == NULL ||
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75 !dicom.GetDcmtkObject().getDataset()->findAndGetSequence(DCM_DirectoryRecordSequence, sequence).good() ||
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76 sequence == NULL)
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77 {
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78 throw OrthancException(ErrorCode_BadFileFormat, "Not a DICOMDIR");
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79 }
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80
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81 content_.resize(sequence->card());
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82 nextOffsets_.resize(content_.size());
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83 lowerOffsets_.resize(content_.size());
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84
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85 // Manually reconstruct the list of all the available offsets of
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86 // "DcmItem", as "fStartPosition" is a protected member in DCMTK
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87 // API
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88 std::set<uint32_t> availableOffsets;
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89 availableOffsets.insert(0);
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90
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91
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92 for (unsigned long i = 0; i < sequence->card(); i++)
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93 {
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94 DcmItem* item = sequence->getItem(i);
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95 if (item == NULL)
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96 {
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97 Clear();
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98 throw OrthancException(ErrorCode_InternalError);
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99 }
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100
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101 Uint32 next, lower;
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102 if (!item->findAndGetUint32(DCM_OffsetOfTheNextDirectoryRecord, next).good() ||
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103 !item->findAndGetUint32(DCM_OffsetOfReferencedLowerLevelDirectoryEntity, lower).good())
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104 {
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105 item->writeXML(std::cout);
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106 throw OrthancException(ErrorCode_BadFileFormat,
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107 "Missing offsets in DICOMDIR");
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108 }
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109
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110 nextOffsets_[i] = next;
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111 lowerOffsets_[i] = lower;
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112
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113 std::unique_ptr<DicomMap> entry(new DicomMap);
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114
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115 std::set<DicomTag> ignoreTagLength;
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116 FromDcmtkBridge::ExtractDicomSummary(*entry, *item, 0 /* don't truncate tags */, ignoreTagLength);
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117
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118 if (next != 0)
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119 {
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120 availableOffsets.insert(next);
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121 }
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122
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123 if (lower != 0)
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124 {
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125 availableOffsets.insert(lower);
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126 }
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127
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128 content_[i] = entry.release();
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129 }
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130
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131 if (content_.size() != availableOffsets.size())
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132 {
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133 throw OrthancException(ErrorCode_BadFileFormat,
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134 "Inconsistent offsets in DICOMDIR");
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135 }
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136
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137 unsigned int index = 0;
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138 for (std::set<uint32_t>::const_iterator it = availableOffsets.begin();
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139 it != availableOffsets.end(); ++it)
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140 {
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141 offsetToIndex_[*it] = index;
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142 index ++;
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143 }
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144 }
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145
4297
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146 ParsedDicomDir::~ParsedDicomDir()
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147 {
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148 Clear();
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149 }
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150
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151 size_t ParsedDicomDir::GetSize() const
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152 {
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153 return content_.size();
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154 }
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155
3554
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156
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157 const DicomMap& ParsedDicomDir::GetItem(size_t i) const
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158 {
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159 if (i >= content_.size())
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160 {
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161 throw OrthancException(ErrorCode_ParameterOutOfRange);
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162 }
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163 else
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164 {
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165 assert(content_[i] != NULL);
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166 return *content_[i];
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167 }
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168 }
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169
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170
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171 bool ParsedDicomDir::LookupNext(size_t& target,
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172 size_t index) const
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173 {
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174 if (index >= nextOffsets_.size())
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175 {
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176 throw OrthancException(ErrorCode_ParameterOutOfRange);
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177 }
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178 else
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179 {
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180 return LookupIndexOfOffset(target, nextOffsets_[index]);
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181 }
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182 }
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183
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184
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185 bool ParsedDicomDir::LookupLower(size_t& target,
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186 size_t index) const
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187 {
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188 if (index >= lowerOffsets_.size())
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189 {
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190 throw OrthancException(ErrorCode_ParameterOutOfRange);
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191 }
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192 else
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193 {
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194 return LookupIndexOfOffset(target, lowerOffsets_[index]);
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195 }
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196 }
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197 }