Mercurial > hg > orthanc
annotate Core/DicomFormat/DicomMap.cpp @ 1511:7962563129c9
starting support of deflate/gzip content types
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Mon, 10 Aug 2015 14:18:24 +0200 |
| parents | 1412ec22ee0b |
| children | 9980875edc7c |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 59 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "../PrecompiledHeaders.h" |
| 0 | 34 #include "DicomMap.h" |
| 35 | |
| 36 #include <stdio.h> | |
| 37 #include <memory> | |
| 38 #include "DicomString.h" | |
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39 #include "DicomArray.h" |
| 59 | 40 #include "../OrthancException.h" |
| 0 | 41 |
| 42 | |
| 59 | 43 namespace Orthanc |
| 0 | 44 { |
| 45 static DicomTag patientTags[] = | |
| 46 { | |
| 38 | 47 //DicomTag(0x0010, 0x1010), // PatientAge |
| 48 //DicomTag(0x0010, 0x1040) // PatientAddress | |
| 77 | 49 DicomTag(0x0010, 0x0010), // PatientName |
| 50 DicomTag(0x0010, 0x0030), // PatientBirthDate | |
| 51 DicomTag(0x0010, 0x0040), // PatientSex | |
| 52 DicomTag(0x0010, 0x1000), // OtherPatientIDs | |
| 80 | 53 DICOM_TAG_PATIENT_ID |
| 0 | 54 }; |
| 55 | |
| 56 static DicomTag studyTags[] = | |
| 57 { | |
| 38 | 58 //DicomTag(0x0010, 0x1020), // PatientSize |
| 59 //DicomTag(0x0010, 0x1030) // PatientWeight | |
| 77 | 60 DicomTag(0x0008, 0x0020), // StudyDate |
| 61 DicomTag(0x0008, 0x0030), // StudyTime | |
| 62 DicomTag(0x0008, 0x1030), // StudyDescription | |
| 63 DicomTag(0x0020, 0x0010), // StudyID | |
| 80 | 64 DICOM_TAG_ACCESSION_NUMBER, |
| 65 DICOM_TAG_STUDY_INSTANCE_UID | |
| 0 | 66 }; |
| 67 | |
| 68 static DicomTag seriesTags[] = | |
| 69 { | |
| 38 | 70 //DicomTag(0x0010, 0x1080), // MilitaryRank |
| 77 | 71 DicomTag(0x0008, 0x0021), // SeriesDate |
| 72 DicomTag(0x0008, 0x0031), // SeriesTime | |
| 73 DicomTag(0x0008, 0x0060), // Modality | |
| 74 DicomTag(0x0008, 0x0070), // Manufacturer | |
| 75 DicomTag(0x0008, 0x1010), // StationName | |
| 76 DicomTag(0x0008, 0x103e), // SeriesDescription | |
| 77 DicomTag(0x0018, 0x0015), // BodyPartExamined | |
| 78 DicomTag(0x0018, 0x0024), // SequenceName | |
| 79 DicomTag(0x0018, 0x1030), // ProtocolName | |
| 80 DicomTag(0x0020, 0x0011), // SeriesNumber | |
| 433 | 81 DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES, |
| 80 | 82 DICOM_TAG_IMAGES_IN_ACQUISITION, |
| 433 | 83 DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, |
| 80 | 84 DICOM_TAG_NUMBER_OF_SLICES, |
| 433 | 85 DICOM_TAG_NUMBER_OF_TIME_SLICES, |
| 80 | 86 DICOM_TAG_SERIES_INSTANCE_UID |
| 0 | 87 }; |
| 88 | |
| 89 static DicomTag instanceTags[] = | |
| 90 { | |
| 77 | 91 DicomTag(0x0008, 0x0012), // InstanceCreationDate |
| 92 DicomTag(0x0008, 0x0013), // InstanceCreationTime | |
| 93 DicomTag(0x0020, 0x0012), // AcquisitionNumber | |
| 80 | 94 DICOM_TAG_IMAGE_INDEX, |
| 95 DICOM_TAG_INSTANCE_NUMBER, | |
| 84 | 96 DICOM_TAG_NUMBER_OF_FRAMES, |
| 433 | 97 DICOM_TAG_TEMPORAL_POSITION_IDENTIFIER, |
| 80 | 98 DICOM_TAG_SOP_INSTANCE_UID |
| 0 | 99 }; |
| 100 | |
| 101 | |
| 102 | |
| 103 | |
| 104 void DicomMap::SetValue(uint16_t group, | |
| 105 uint16_t element, | |
| 106 DicomValue* value) | |
| 107 { | |
| 108 DicomTag tag(group, element); | |
| 109 Map::iterator it = map_.find(tag); | |
| 110 | |
| 111 if (it != map_.end()) | |
| 112 { | |
| 113 delete it->second; | |
| 114 it->second = value; | |
| 115 } | |
| 116 else | |
| 117 { | |
| 118 map_.insert(std::make_pair(tag, value)); | |
| 119 } | |
| 120 } | |
| 121 | |
| 122 void DicomMap::SetValue(DicomTag tag, | |
| 123 DicomValue* value) | |
| 124 { | |
| 125 SetValue(tag.GetGroup(), tag.GetElement(), value); | |
| 126 } | |
| 127 | |
| 128 | |
| 129 | |
| 130 | |
| 131 void DicomMap::Clear() | |
| 132 { | |
| 656 | 133 for (Map::iterator it = map_.begin(); it != map_.end(); ++it) |
| 0 | 134 { |
| 135 delete it->second; | |
| 136 } | |
| 137 | |
| 138 map_.clear(); | |
| 139 } | |
| 140 | |
| 141 | |
| 142 void DicomMap::ExtractTags(DicomMap& result, | |
| 143 const DicomTag* tags, | |
| 144 size_t count) const | |
| 145 { | |
| 146 result.Clear(); | |
| 147 | |
| 148 for (unsigned int i = 0; i < count; i++) | |
| 149 { | |
| 150 Map::const_iterator it = map_.find(tags[i]); | |
| 151 if (it != map_.end()) | |
| 152 { | |
| 153 result.SetValue(it->first, it->second->Clone()); | |
| 154 } | |
| 155 } | |
| 156 } | |
| 157 | |
| 158 | |
| 159 void DicomMap::ExtractPatientInformation(DicomMap& result) const | |
| 160 { | |
| 161 ExtractTags(result, patientTags, sizeof(patientTags) / sizeof(DicomTag)); | |
| 162 } | |
| 163 | |
| 164 void DicomMap::ExtractStudyInformation(DicomMap& result) const | |
| 165 { | |
| 166 ExtractTags(result, studyTags, sizeof(studyTags) / sizeof(DicomTag)); | |
| 167 } | |
| 168 | |
| 169 void DicomMap::ExtractSeriesInformation(DicomMap& result) const | |
| 170 { | |
| 171 ExtractTags(result, seriesTags, sizeof(seriesTags) / sizeof(DicomTag)); | |
| 172 } | |
| 173 | |
| 174 void DicomMap::ExtractInstanceInformation(DicomMap& result) const | |
| 175 { | |
| 176 ExtractTags(result, instanceTags, sizeof(instanceTags) / sizeof(DicomTag)); | |
| 177 } | |
| 178 | |
| 179 | |
| 80 | 180 |
| 0 | 181 DicomMap* DicomMap::Clone() const |
| 182 { | |
| 183 std::auto_ptr<DicomMap> result(new DicomMap); | |
| 184 | |
| 656 | 185 for (Map::const_iterator it = map_.begin(); it != map_.end(); ++it) |
| 0 | 186 { |
| 187 result->map_.insert(std::make_pair(it->first, it->second->Clone())); | |
| 188 } | |
| 189 | |
| 190 return result.release(); | |
| 191 } | |
| 192 | |
| 193 | |
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194 void DicomMap::Assign(const DicomMap& other) |
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195 { |
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196 Clear(); |
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197 |
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198 for (Map::const_iterator it = other.map_.begin(); it != other.map_.end(); ++it) |
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199 { |
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200 map_.insert(std::make_pair(it->first, it->second->Clone())); |
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201 } |
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202 } |
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203 |
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204 |
| 0 | 205 const DicomValue& DicomMap::GetValue(const DicomTag& tag) const |
| 206 { | |
| 80 | 207 const DicomValue* value = TestAndGetValue(tag); |
| 208 | |
| 209 if (value) | |
| 210 { | |
| 211 return *value; | |
| 212 } | |
| 213 else | |
| 214 { | |
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215 throw OrthancException(ErrorCode_InexistentTag); |
| 80 | 216 } |
| 217 } | |
| 218 | |
| 219 | |
| 220 const DicomValue* DicomMap::TestAndGetValue(const DicomTag& tag) const | |
| 221 { | |
| 0 | 222 Map::const_iterator it = map_.find(tag); |
| 223 | |
| 224 if (it == map_.end()) | |
| 225 { | |
| 80 | 226 return NULL; |
| 0 | 227 } |
| 228 else | |
| 229 { | |
| 80 | 230 return it->second; |
| 0 | 231 } |
| 232 } | |
| 233 | |
| 234 | |
| 235 void DicomMap::Remove(const DicomTag& tag) | |
| 236 { | |
| 237 Map::iterator it = map_.find(tag); | |
| 238 if (it != map_.end()) | |
| 239 { | |
| 240 delete it->second; | |
| 241 map_.erase(it); | |
| 242 } | |
| 243 } | |
| 244 | |
| 245 | |
| 246 static void SetupFindTemplate(DicomMap& result, | |
| 247 const DicomTag* tags, | |
| 248 size_t count) | |
| 249 { | |
| 250 result.Clear(); | |
| 251 | |
| 252 for (size_t i = 0; i < count; i++) | |
| 253 { | |
| 254 result.SetValue(tags[i], ""); | |
| 255 } | |
| 256 } | |
| 257 | |
| 258 void DicomMap::SetupFindPatientTemplate(DicomMap& result) | |
| 259 { | |
| 260 SetupFindTemplate(result, patientTags, sizeof(patientTags) / sizeof(DicomTag)); | |
| 261 } | |
| 262 | |
| 263 void DicomMap::SetupFindStudyTemplate(DicomMap& result) | |
| 264 { | |
| 265 SetupFindTemplate(result, studyTags, sizeof(studyTags) / sizeof(DicomTag)); | |
| 80 | 266 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 267 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 0 | 268 } |
| 269 | |
| 270 void DicomMap::SetupFindSeriesTemplate(DicomMap& result) | |
| 271 { | |
| 272 SetupFindTemplate(result, seriesTags, sizeof(seriesTags) / sizeof(DicomTag)); | |
| 80 | 273 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 274 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 275 result.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, ""); | |
| 1372 | 276 |
| 277 // These tags are considered as "main" by Orthanc, but are not in the Series module | |
| 278 result.Remove(DicomTag(0x0008, 0x0070)); // Manufacturer | |
| 279 result.Remove(DicomTag(0x0008, 0x1010)); // Station name | |
| 280 result.Remove(DicomTag(0x0018, 0x0024)); // Sequence name | |
| 281 result.Remove(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES); | |
| 282 result.Remove(DICOM_TAG_IMAGES_IN_ACQUISITION); | |
| 283 result.Remove(DICOM_TAG_NUMBER_OF_SLICES); | |
| 284 result.Remove(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS); | |
| 285 result.Remove(DICOM_TAG_NUMBER_OF_TIME_SLICES); | |
| 0 | 286 } |
| 287 | |
| 288 void DicomMap::SetupFindInstanceTemplate(DicomMap& result) | |
| 289 { | |
| 290 SetupFindTemplate(result, instanceTags, sizeof(instanceTags) / sizeof(DicomTag)); | |
| 80 | 291 result.SetValue(DICOM_TAG_ACCESSION_NUMBER, ""); |
| 292 result.SetValue(DICOM_TAG_PATIENT_ID, ""); | |
| 293 result.SetValue(DICOM_TAG_STUDY_INSTANCE_UID, ""); | |
| 294 result.SetValue(DICOM_TAG_SERIES_INSTANCE_UID, ""); | |
| 0 | 295 } |
| 296 | |
| 297 | |
| 298 void DicomMap::CopyTagIfExists(const DicomMap& source, | |
| 299 const DicomTag& tag) | |
| 300 { | |
| 301 if (source.HasTag(tag)) | |
| 302 { | |
| 303 SetValue(tag, source.GetValue(tag)); | |
| 304 } | |
| 305 } | |
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306 |
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307 |
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308 bool DicomMap::IsMainDicomTag(const DicomTag& tag, ResourceType level) |
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309 { |
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310 DicomTag *tags = NULL; |
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311 size_t size; |
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312 |
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313 switch (level) |
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314 { |
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315 case ResourceType_Patient: |
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316 tags = patientTags; |
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317 size = sizeof(patientTags) / sizeof(DicomTag); |
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318 break; |
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319 |
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320 case ResourceType_Study: |
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321 tags = studyTags; |
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322 size = sizeof(studyTags) / sizeof(DicomTag); |
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323 break; |
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324 |
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325 case ResourceType_Series: |
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326 tags = seriesTags; |
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327 size = sizeof(seriesTags) / sizeof(DicomTag); |
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328 break; |
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329 |
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330 case ResourceType_Instance: |
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331 tags = instanceTags; |
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332 size = sizeof(instanceTags) / sizeof(DicomTag); |
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333 break; |
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334 |
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335 default: |
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336 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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337 } |
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338 |
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339 for (size_t i = 0; i < size; i++) |
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340 { |
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341 if (tags[i] == tag) |
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342 { |
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343 return true; |
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344 } |
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345 } |
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346 |
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347 return false; |
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348 } |
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349 |
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350 bool DicomMap::IsMainDicomTag(const DicomTag& tag) |
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351 { |
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352 return (IsMainDicomTag(tag, ResourceType_Patient) || |
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353 IsMainDicomTag(tag, ResourceType_Study) || |
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354 IsMainDicomTag(tag, ResourceType_Series) || |
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355 IsMainDicomTag(tag, ResourceType_Instance)); |
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356 } |
| 567 | 357 |
| 358 | |
| 359 void DicomMap::GetMainDicomTagsInternal(std::set<DicomTag>& result, ResourceType level) | |
| 360 { | |
| 361 DicomTag *tags = NULL; | |
| 362 size_t size; | |
| 363 | |
| 364 switch (level) | |
| 365 { | |
| 366 case ResourceType_Patient: | |
| 367 tags = patientTags; | |
| 368 size = sizeof(patientTags) / sizeof(DicomTag); | |
| 369 break; | |
| 370 | |
| 371 case ResourceType_Study: | |
| 372 tags = studyTags; | |
| 373 size = sizeof(studyTags) / sizeof(DicomTag); | |
| 374 break; | |
| 375 | |
| 376 case ResourceType_Series: | |
| 377 tags = seriesTags; | |
| 378 size = sizeof(seriesTags) / sizeof(DicomTag); | |
| 379 break; | |
| 380 | |
| 381 case ResourceType_Instance: | |
| 382 tags = instanceTags; | |
| 383 size = sizeof(instanceTags) / sizeof(DicomTag); | |
| 384 break; | |
| 385 | |
| 386 default: | |
| 387 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 388 } | |
| 389 | |
| 390 for (size_t i = 0; i < size; i++) | |
| 391 { | |
| 392 result.insert(tags[i]); | |
| 393 } | |
| 394 } | |
| 395 | |
| 396 | |
| 397 void DicomMap::GetMainDicomTags(std::set<DicomTag>& result, ResourceType level) | |
| 398 { | |
| 399 result.clear(); | |
| 400 GetMainDicomTagsInternal(result, level); | |
| 401 } | |
| 402 | |
| 403 | |
| 404 void DicomMap::GetMainDicomTags(std::set<DicomTag>& result) | |
| 405 { | |
| 406 result.clear(); | |
| 407 GetMainDicomTagsInternal(result, ResourceType_Patient); | |
| 408 GetMainDicomTagsInternal(result, ResourceType_Study); | |
| 409 GetMainDicomTagsInternal(result, ResourceType_Series); | |
| 410 GetMainDicomTagsInternal(result, ResourceType_Instance); | |
| 411 } | |
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412 |
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413 |
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414 void DicomMap::Print(FILE* fp) const |
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415 { |
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416 DicomArray a(*this); |
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417 a.Print(fp); |
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418 } |
| 1360 | 419 |
| 420 | |
| 421 void DicomMap::GetTags(std::set<DicomTag>& tags) const | |
| 422 { | |
| 423 tags.clear(); | |
| 424 | |
| 425 for (Map::const_iterator it = map_.begin(); | |
| 426 it != map_.end(); ++it) | |
| 427 { | |
| 428 tags.insert(it->first); | |
| 429 } | |
| 430 } | |
| 0 | 431 } |