Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 3912:7610af1532c3 transcoding
prototyping automated transcoding of incoming DICOM files
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 08 May 2020 13:43:50 +0200 |
parents | 1f71c2f20e16 |
children | 6ddad3e0b569 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
2642 | 37 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../../Core/Logging.h" |
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39 #include "../../Core/SerializationToolbox.h" |
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40 #include "../OrthancConfiguration.h" |
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41 #include "../ServerContext.h" |
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42 #include "../ServerJobs/MergeStudyJob.h" |
2642 | 43 #include "../ServerJobs/ResourceModificationJob.h" |
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44 #include "../ServerJobs/SplitStudyJob.h" |
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45 |
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46 #include <boost/lexical_cast.hpp> |
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47 #include <boost/algorithm/string/predicate.hpp> |
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48 |
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49 namespace Orthanc |
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50 { |
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51 // Modification of DICOM instances ------------------------------------------ |
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52 |
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53 |
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54 static std::string GeneratePatientName(ServerContext& context) |
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55 { |
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56 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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57 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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58 } |
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59 |
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60 |
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61 static void ParseModifyRequest(Json::Value& request, |
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62 DicomModification& target, |
2517 | 63 const RestApiPostCall& call) |
64 { | |
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65 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}' |
2517 | 66 |
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67 { |
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68 OrthancConfiguration::ReaderLock lock; |
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69 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator()); |
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70 } |
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71 |
2517 | 72 if (call.ParseJsonRequest(request)) |
73 { | |
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74 target.ParseModifyRequest(request); |
2517 | 75 } |
76 else | |
77 { | |
78 throw OrthancException(ErrorCode_BadFileFormat); | |
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79 } |
2517 | 80 } |
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81 |
2517 | 82 |
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83 static void ParseAnonymizationRequest(Json::Value& request, |
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84 DicomModification& target, |
2517 | 85 RestApiPostCall& call) |
86 { | |
87 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
88 | |
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89 { |
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90 OrthancConfiguration::ReaderLock lock; |
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91 target.SetPrivateCreator(lock.GetConfiguration().GetDefaultPrivateCreator()); |
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92 } |
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93 |
2517 | 94 if (call.ParseJsonRequest(request) && |
95 request.isObject()) | |
96 { | |
2518 | 97 bool patientNameReplaced; |
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98 target.ParseAnonymizationRequest(patientNameReplaced, request); |
2518 | 99 |
100 if (patientNameReplaced) | |
101 { | |
102 // Overwrite the random Patient's Name by one that is more | |
103 // user-friendly (provided none was specified by the user) | |
104 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); | |
105 } | |
2517 | 106 } |
107 else | |
108 { | |
109 throw OrthancException(ErrorCode_BadFileFormat); | |
110 } | |
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111 } |
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112 |
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113 |
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114 static void AnonymizeOrModifyInstance(DicomModification& modification, |
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115 RestApiPostCall& call, |
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116 bool transcode, |
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117 DicomTransferSyntax targetSyntax) |
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118 { |
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119 ServerContext& context = OrthancRestApi::GetContext(call); |
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120 std::string id = call.GetUriComponent("id", ""); |
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121 |
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122 std::unique_ptr<ParsedDicomFile> modified; |
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123 |
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124 { |
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125 ServerContext::DicomCacheLocker locker(context, id); |
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126 modified.reset(locker.GetDicom().Clone(true)); |
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127 } |
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128 |
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129 modification.Apply(*modified); |
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130 |
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131 if (transcode) |
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132 { |
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133 std::string transcoded; |
3910 | 134 DicomTransferSyntax sourceSyntax; |
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135 bool hasSopInstanceUidChanged; |
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136 |
3910 | 137 if (context.Transcode(transcoded, sourceSyntax, hasSopInstanceUidChanged, |
138 *modified, targetSyntax, true)) | |
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139 { |
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140 call.GetOutput().AnswerBuffer(transcoded, MimeType_Dicom); |
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141 } |
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142 else |
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143 { |
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144 throw OrthancException(ErrorCode_InternalError, |
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145 "Cannot transcode to transfer syntax: " + |
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146 std::string(GetTransferSyntaxUid(targetSyntax))); |
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147 } |
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148 } |
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149 else |
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150 { |
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151 modified->Answer(call.GetOutput()); |
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152 } |
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153 } |
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154 |
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155 |
974 | 156 static void ModifyInstance(RestApiPostCall& call) |
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157 { |
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158 DicomModification modification; |
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159 modification.SetAllowManualIdentifiers(true); |
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160 |
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161 Json::Value request; |
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162 ParseModifyRequest(request, modification, call); |
2517 | 163 |
164 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
165 { | |
166 modification.SetLevel(ResourceType_Patient); | |
167 } | |
168 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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169 { |
2517 | 170 modification.SetLevel(ResourceType_Study); |
171 } | |
172 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
173 { | |
174 modification.SetLevel(ResourceType_Series); | |
175 } | |
176 else | |
177 { | |
178 modification.SetLevel(ResourceType_Instance); | |
179 } | |
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180 |
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181 if (request.isMember("Transcode")) |
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182 { |
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183 std::string s = SerializationToolbox::ReadString(request, "Transcode"); |
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184 |
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185 DicomTransferSyntax syntax; |
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186 if (LookupTransferSyntax(syntax, s)) |
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187 { |
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188 AnonymizeOrModifyInstance(modification, call, true, syntax); |
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189 } |
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190 else |
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191 { |
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192 throw OrthancException(ErrorCode_ParameterOutOfRange, "Unknown transfer syntax: " + s); |
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193 } |
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194 } |
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195 else |
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196 { |
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197 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */, |
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198 DicomTransferSyntax_LittleEndianImplicit /* unused */); |
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199 } |
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200 } |
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201 |
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202 |
974 | 203 static void AnonymizeInstance(RestApiPostCall& call) |
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204 { |
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205 DicomModification modification; |
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206 modification.SetAllowManualIdentifiers(true); |
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207 |
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208 Json::Value request; |
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209 ParseAnonymizationRequest(request, modification, call); |
2517 | 210 |
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211 AnonymizeOrModifyInstance(modification, call, false /* no transcoding */, |
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212 DicomTransferSyntax_LittleEndianImplicit /* unused */); |
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213 } |
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214 |
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215 |
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216 static void SubmitModificationJob(std::unique_ptr<DicomModification>& modification, |
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217 bool isAnonymization, |
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218 RestApiPostCall& call, |
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219 const Json::Value& body, |
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220 ResourceType level) |
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221 { |
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222 ServerContext& context = OrthancRestApi::GetContext(call); |
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223 |
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224 std::unique_ptr<ResourceModificationJob> job(new ResourceModificationJob(context)); |
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225 |
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226 job->SetModification(modification.release(), level, isAnonymization); |
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227 job->SetOrigin(call); |
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228 |
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229 context.AddChildInstances(*job, call.GetUriComponent("id", "")); |
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230 |
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231 OrthancRestApi::GetApi(call).SubmitCommandsJob |
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232 (call, job.release(), true /* synchronous by default */, body); |
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233 } |
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234 |
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235 |
2639 | 236 template <enum ResourceType resourceType> |
974 | 237 static void ModifyResource(RestApiPostCall& call) |
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238 { |
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239 std::unique_ptr<DicomModification> modification(new DicomModification); |
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240 |
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241 Json::Value body; |
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242 ParseModifyRequest(body, *modification, call); |
2517 | 243 |
2639 | 244 modification->SetLevel(resourceType); |
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245 |
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246 SubmitModificationJob(modification, false /* not an anonymization */, |
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247 call, body, resourceType); |
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248 } |
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249 |
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250 |
2639 | 251 template <enum ResourceType resourceType> |
974 | 252 static void AnonymizeResource(RestApiPostCall& call) |
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253 { |
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254 std::unique_ptr<DicomModification> modification(new DicomModification); |
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255 |
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256 Json::Value body; |
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257 ParseAnonymizationRequest(body, *modification, call); |
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258 |
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259 SubmitModificationJob(modification, true /* anonymization */, |
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260 call, body, resourceType); |
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261 } |
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262 |
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263 |
1569 | 264 static void StoreCreatedInstance(std::string& id /* out */, |
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265 RestApiPostCall& call, |
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266 ParsedDicomFile& dicom, |
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267 bool sendAnswer) |
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268 { |
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269 DicomInstanceToStore toStore; |
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270 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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271 toStore.SetParsedDicomFile(dicom); |
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272 |
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273 ServerContext& context = OrthancRestApi::GetContext(call); |
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274 StoreStatus status = context.Store(id, toStore, StoreInstanceMode_Default); |
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275 |
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276 if (status == StoreStatus_Failure) |
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277 { |
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278 throw OrthancException(ErrorCode_CannotStoreInstance); |
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279 } |
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280 |
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281 if (sendAnswer) |
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282 { |
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283 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, toStore, status, id); |
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284 } |
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285 } |
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286 |
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287 |
1569 | 288 static void CreateDicomV1(ParsedDicomFile& dicom, |
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289 RestApiPostCall& call, |
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290 const Json::Value& request) |
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291 { |
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292 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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293 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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294 |
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295 assert(request.isObject()); |
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296 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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297 |
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298 Json::Value::Members members = request.getMemberNames(); |
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299 for (size_t i = 0; i < members.size(); i++) |
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300 { |
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301 const std::string& name = members[i]; |
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302 if (request[name].type() != Json::stringValue) |
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303 { |
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304 throw OrthancException(ErrorCode_CreateDicomNotString); |
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305 } |
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306 |
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307 std::string value = request[name].asString(); |
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308 |
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309 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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310 if (tag == DICOM_TAG_PIXEL_DATA) |
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311 { |
1562 | 312 dicom.EmbedContent(value); |
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313 } |
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314 else |
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315 { |
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316 // This is V1, don't try and decode data URI scheme |
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317 dicom.ReplacePlainString(tag, value); |
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318 } |
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319 } |
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320 } |
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321 |
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322 |
1569 | 323 static void InjectTags(ParsedDicomFile& dicom, |
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324 const Json::Value& tags, |
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325 bool decodeBinaryTags, |
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326 const std::string& privateCreator) |
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327 { |
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328 if (tags.type() != Json::objectValue) |
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329 { |
2955 | 330 throw OrthancException(ErrorCode_BadRequest, "Tags field is not an array"); |
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331 } |
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332 |
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333 // Inject the user-specified tags |
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334 Json::Value::Members members = tags.getMemberNames(); |
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335 for (size_t i = 0; i < members.size(); i++) |
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336 { |
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337 const std::string& name = members[i]; |
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338 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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339 |
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340 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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341 { |
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342 if (tag != DICOM_TAG_PATIENT_ID && |
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343 tag != DICOM_TAG_ACQUISITION_DATE && |
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344 tag != DICOM_TAG_ACQUISITION_TIME && |
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345 tag != DICOM_TAG_CONTENT_DATE && |
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346 tag != DICOM_TAG_CONTENT_TIME && |
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347 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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348 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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349 tag != DICOM_TAG_SERIES_DATE && |
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350 tag != DICOM_TAG_SERIES_TIME && |
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351 tag != DICOM_TAG_STUDY_DATE && |
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352 tag != DICOM_TAG_STUDY_TIME && |
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353 dicom.HasTag(tag)) |
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354 { |
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355 throw OrthancException(ErrorCode_CreateDicomOverrideTag, name); |
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356 } |
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357 |
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358 if (tag == DICOM_TAG_PIXEL_DATA) |
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359 { |
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360 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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361 } |
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362 else |
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363 { |
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364 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent, privateCreator); |
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365 } |
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366 } |
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367 } |
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368 } |
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369 |
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370 |
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371 static void CreateSeries(RestApiPostCall& call, |
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372 ParsedDicomFile& base /* in */, |
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373 const Json::Value& content, |
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374 bool decodeBinaryTags, |
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375 const std::string& privateCreator) |
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376 { |
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377 assert(content.isArray()); |
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378 assert(content.size() > 0); |
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379 ServerContext& context = OrthancRestApi::GetContext(call); |
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380 |
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381 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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382 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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383 |
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384 std::string someInstance; |
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385 |
1566 | 386 try |
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387 { |
1569 | 388 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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389 { |
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390 std::unique_ptr<ParsedDicomFile> dicom(base.Clone(false)); |
1566 | 391 const Json::Value* payload = NULL; |
392 | |
393 if (content[i].type() == Json::stringValue) | |
394 { | |
395 payload = &content[i]; | |
396 } | |
397 else if (content[i].type() == Json::objectValue) | |
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398 { |
1566 | 399 if (!content[i].isMember("Content")) |
400 { | |
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401 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 402 } |
403 | |
404 payload = &content[i]["Content"]; | |
405 | |
1569 | 406 if (content[i].isMember("Tags")) |
1570 | 407 { |
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408 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags, privateCreator); |
1570 | 409 } |
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410 } |
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411 |
1566 | 412 if (payload == NULL || |
413 payload->type() != Json::stringValue) | |
414 { | |
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415 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 416 } |
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417 |
1566 | 418 dicom->EmbedContent(payload->asString()); |
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419 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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420 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 421 |
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422 StoreCreatedInstance(someInstance, call, *dicom, false); |
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423 } |
1566 | 424 } |
1616 | 425 catch (OrthancException&) |
1566 | 426 { |
1569 | 427 // Error: Remove the newly-created series |
428 | |
429 std::string series; | |
430 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 431 { |
1569 | 432 Json::Value dummy; |
433 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 434 } |
1569 | 435 |
1616 | 436 throw; |
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437 } |
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438 |
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439 std::string series; |
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440 if (context.GetIndex().LookupParent(series, someInstance)) |
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441 { |
1569 | 442 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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443 } |
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444 } |
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445 |
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446 |
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447 static void CreateDicomV2(RestApiPostCall& call, |
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448 const Json::Value& request) |
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449 { |
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450 assert(request.isObject()); |
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451 ServerContext& context = OrthancRestApi::GetContext(call); |
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452 |
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453 if (!request.isMember("Tags") || |
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454 request["Tags"].type() != Json::objectValue) |
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455 { |
1569 | 456 throw OrthancException(ErrorCode_BadRequest); |
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457 } |
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458 |
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459 ParsedDicomFile dicom(true); |
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460 |
1557 | 461 { |
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462 Encoding encoding; |
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463 |
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464 if (request["Tags"].isMember("SpecificCharacterSet")) |
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465 { |
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466 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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467 if (!GetDicomEncoding(encoding, tmp)) |
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468 { |
2955 | 469 throw OrthancException(ErrorCode_ParameterOutOfRange, |
470 "Unknown specific character set: " + std::string(tmp)); | |
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471 } |
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472 } |
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473 else |
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474 { |
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475 encoding = GetDefaultDicomEncoding(); |
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476 } |
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477 |
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478 dicom.SetEncoding(encoding); |
1557 | 479 } |
480 | |
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481 ResourceType parentType = ResourceType_Instance; |
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482 |
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483 if (request.isMember("Parent")) |
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484 { |
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485 // Locate the parent tags |
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486 std::string parent = request["Parent"].asString(); |
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487 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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488 { |
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489 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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490 } |
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491 |
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492 if (parentType == ResourceType_Instance) |
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493 { |
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494 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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495 } |
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496 |
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497 // Select one existing child instance of the parent resource, to |
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498 // retrieve all its tags |
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499 Json::Value siblingTags; |
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500 std::string siblingInstanceId; |
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501 |
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502 { |
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503 // Retrieve all the instances of the parent resource |
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504 std::list<std::string> siblingInstances; |
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505 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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506 |
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507 if (siblingInstances.empty()) |
1569 | 508 { |
509 // Error: No instance (should never happen) | |
510 throw OrthancException(ErrorCode_InternalError); | |
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511 } |
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512 |
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513 siblingInstanceId = siblingInstances.front(); |
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514 context.ReadDicomAsJson(siblingTags, siblingInstanceId); |
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515 } |
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516 |
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517 |
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518 // Choose the same encoding as the parent resource |
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519 { |
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520 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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521 |
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522 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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523 { |
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524 Encoding encoding; |
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525 |
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526 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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527 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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528 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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529 { |
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530 LOG(WARNING) << "Instance with an incorrect Specific Character Set, " |
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531 << "using the default Orthanc encoding: " << siblingInstanceId; |
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532 encoding = GetDefaultDicomEncoding(); |
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533 } |
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534 |
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535 dicom.SetEncoding(encoding); |
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536 } |
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537 } |
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538 |
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539 |
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540 // Retrieve the tags for all the parent modules |
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541 typedef std::set<DicomTag> ModuleTags; |
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542 ModuleTags moduleTags; |
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543 |
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544 ResourceType type = parentType; |
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545 for (;;) |
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546 { |
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547 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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548 |
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549 if (type == ResourceType_Patient) |
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550 { |
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551 break; // We're done |
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552 } |
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553 |
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554 // Go up |
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555 std::string tmp; |
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556 if (!context.GetIndex().LookupParent(tmp, parent)) |
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557 { |
1569 | 558 throw OrthancException(ErrorCode_InternalError); |
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559 } |
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560 |
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561 parent = tmp; |
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562 type = GetParentResourceType(type); |
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563 } |
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564 |
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565 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 566 it != moduleTags.end(); ++it) |
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567 { |
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568 std::string t = it->Format(); |
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569 if (siblingTags.isMember(t)) |
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570 { |
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571 const Json::Value& tag = siblingTags[t]; |
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572 if (tag["Type"] == "Null") |
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573 { |
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574 dicom.ReplacePlainString(*it, ""); |
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575 } |
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576 else if (tag["Type"] == "String") |
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577 { |
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578 std::string value = tag["Value"].asString(); // This is an UTF-8 value (as it comes from JSON) |
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579 dicom.ReplacePlainString(*it, value); |
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580 } |
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581 } |
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582 } |
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583 } |
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584 |
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585 |
1689 | 586 bool decodeBinaryTags = true; |
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587 if (request.isMember("InterpretBinaryTags")) |
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588 { |
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589 const Json::Value& v = request["InterpretBinaryTags"]; |
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590 if (v.type() != Json::booleanValue) |
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591 { |
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592 throw OrthancException(ErrorCode_BadRequest); |
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593 } |
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594 |
1689 | 595 decodeBinaryTags = v.asBool(); |
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596 } |
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597 |
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598 |
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599 // New argument in Orthanc 1.6.0 |
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600 std::string privateCreator; |
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601 if (request.isMember("PrivateCreator")) |
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602 { |
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603 const Json::Value& v = request["PrivateCreator"]; |
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604 if (v.type() != Json::stringValue) |
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605 { |
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606 throw OrthancException(ErrorCode_BadRequest); |
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607 } |
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608 |
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609 privateCreator = v.asString(); |
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610 } |
3709
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611 else |
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612 { |
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613 OrthancConfiguration::ReaderLock lock; |
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614 privateCreator = lock.GetConfiguration().GetDefaultPrivateCreator(); |
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615 } |
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616 |
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617 |
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618 // Inject time-related information |
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619 std::string date, time; |
2475
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Orthanc now uses UTC (universal time) instead of local time in its database
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620 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
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621 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
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622 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
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623 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
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624 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
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625 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
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|
626 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
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627 |
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628 if (parentType == ResourceType_Patient || |
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629 parentType == ResourceType_Study || |
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630 parentType == ResourceType_Instance /* no parent */) |
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631 { |
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632 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
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633 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
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634 } |
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635 |
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636 if (parentType == ResourceType_Patient || |
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637 parentType == ResourceType_Instance /* no parent */) |
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638 { |
1982
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diff
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639 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
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diff
changeset
|
640 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
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641 } |
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Creation of DICOM files with encapsulated PDF
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642 |
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Creation of DICOM files with encapsulated PDF
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643 |
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644 InjectTags(dicom, request["Tags"], decodeBinaryTags, privateCreator); |
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Creation of DICOM files with encapsulated PDF
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645 |
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Creation of DICOM files with encapsulated PDF
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646 |
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Creation of DICOM files with encapsulated PDF
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647 // Inject the content (either an image, or a PDF file) |
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Creation of DICOM files with encapsulated PDF
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648 if (request.isMember("Content")) |
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649 { |
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650 const Json::Value& content = request["Content"]; |
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651 |
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652 if (content.type() == Json::stringValue) |
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653 { |
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654 dicom.EmbedContent(request["Content"].asString()); |
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655 |
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656 } |
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657 else if (content.type() == Json::arrayValue) |
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658 { |
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659 if (content.size() > 0) |
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660 { |
1565
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661 // Let's create a series instead of a single instance |
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662 CreateSeries(call, dicom, content, decodeBinaryTags, privateCreator); |
1564
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663 return; |
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664 } |
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665 } |
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666 else |
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667 { |
1582
bd1889029cbb
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668 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
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669 } |
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Creation of DICOM files with encapsulated PDF
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670 } |
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Creation of DICOM files with encapsulated PDF
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671 |
1564
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672 std::string id; |
2899
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673 StoreCreatedInstance(id, call, dicom, true); |
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Creation of DICOM files with encapsulated PDF
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674 } |
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Creation of DICOM files with encapsulated PDF
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|
675 |
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Creation of DICOM files with encapsulated PDF
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676 |
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677 static void CreateDicom(RestApiPostCall& call) |
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678 { |
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679 Json::Value request; |
1569 | 680 if (!call.ParseJsonRequest(request) || |
681 !request.isObject()) | |
1570 | 682 { |
683 throw OrthancException(ErrorCode_BadRequest); | |
684 } | |
1569 | 685 |
686 if (request.isMember("Tags")) | |
1570 | 687 { |
688 CreateDicomV2(call, request); | |
689 } | |
1569 | 690 else |
1570 | 691 { |
692 // Compatibility with Orthanc <= 0.9.3 | |
1805
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693 ParsedDicomFile dicom(true); |
1572
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694 CreateDicomV1(dicom, call, request); |
1569 | 695 |
1570 | 696 std::string id; |
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697 StoreCreatedInstance(id, call, dicom, true); |
1570 | 698 } |
796
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699 } |
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|
700 |
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|
701 |
2844
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702 static void SplitStudy(RestApiPostCall& call) |
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703 { |
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704 ServerContext& context = OrthancRestApi::GetContext(call); |
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705 |
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706 Json::Value request; |
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707 if (!call.ParseJsonRequest(request)) |
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708 { |
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709 // Bad JSON request |
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710 throw OrthancException(ErrorCode_BadFileFormat); |
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711 } |
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712 |
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713 const std::string study = call.GetUriComponent("id", ""); |
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changeset
|
714 |
3712
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replacing std::auto_ptr by std::unique_ptr
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3709
diff
changeset
|
715 std::unique_ptr<SplitStudyJob> job(new SplitStudyJob(context, study)); |
2844
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716 job->SetOrigin(call); |
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717 |
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718 std::vector<std::string> series; |
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diff
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|
719 SerializationToolbox::ReadArrayOfStrings(series, request, "Series"); |
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720 |
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diff
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721 for (size_t i = 0; i < series.size(); i++) |
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722 { |
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diff
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723 job->AddSourceSeries(series[i]); |
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|
724 } |
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New URI: "/studies/.../split" to split a study
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|
725 |
2860 | 726 job->AddTrailingStep(); |
727 | |
2844
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New URI: "/studies/.../split" to split a study
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|
728 static const char* KEEP_SOURCE = "KeepSource"; |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
729 if (request.isMember(KEEP_SOURCE)) |
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diff
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|
730 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
731 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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732 } |
99863d6245b2
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|
733 |
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diff
changeset
|
734 static const char* REMOVE = "Remove"; |
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diff
changeset
|
735 if (request.isMember(REMOVE)) |
99863d6245b2
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diff
changeset
|
736 { |
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New URI: "/studies/.../split" to split a study
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737 if (request[REMOVE].type() != Json::arrayValue) |
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parents:
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|
738 { |
99863d6245b2
New URI: "/studies/.../split" to split a study
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739 throw OrthancException(ErrorCode_BadFileFormat); |
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diff
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|
740 } |
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diff
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|
741 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
742 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++) |
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743 { |
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diff
changeset
|
744 if (request[REMOVE][i].type() != Json::stringValue) |
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745 { |
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changeset
|
746 throw OrthancException(ErrorCode_BadFileFormat); |
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747 } |
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748 else |
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New URI: "/studies/.../split" to split a study
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|
749 { |
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New URI: "/studies/.../split" to split a study
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diff
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750 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString())); |
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New URI: "/studies/.../split" to split a study
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751 } |
99863d6245b2
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752 } |
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New URI: "/studies/.../split" to split a study
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diff
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|
753 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
754 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
755 static const char* REPLACE = "Replace"; |
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New URI: "/studies/.../split" to split a study
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|
756 if (request.isMember(REPLACE)) |
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New URI: "/studies/.../split" to split a study
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|
757 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
758 if (request[REPLACE].type() != Json::objectValue) |
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diff
changeset
|
759 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
760 throw OrthancException(ErrorCode_BadFileFormat); |
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New URI: "/studies/.../split" to split a study
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|
761 } |
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diff
changeset
|
762 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
763 Json::Value::Members tags = request[REPLACE].getMemberNames(); |
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New URI: "/studies/.../split" to split a study
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changeset
|
764 |
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765 for (size_t i = 0; i < tags.size(); i++) |
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766 { |
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767 const Json::Value& value = request[REPLACE][tags[i]]; |
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768 |
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769 if (value.type() != Json::stringValue) |
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770 { |
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771 throw OrthancException(ErrorCode_BadFileFormat); |
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772 } |
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773 else |
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774 { |
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775 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString()); |
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776 } |
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777 } |
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778 } |
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779 |
2869 | 780 OrthancRestApi::GetApi(call).SubmitCommandsJob |
781 (call, job.release(), true /* synchronous by default */, request); | |
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782 } |
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783 |
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784 |
2853
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785 static void MergeStudy(RestApiPostCall& call) |
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786 { |
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New URI: "/studies/.../merge" to merge a study
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787 ServerContext& context = OrthancRestApi::GetContext(call); |
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788 |
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789 Json::Value request; |
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790 if (!call.ParseJsonRequest(request)) |
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791 { |
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792 // Bad JSON request |
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793 throw OrthancException(ErrorCode_BadFileFormat); |
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794 } |
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795 |
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796 const std::string study = call.GetUriComponent("id", ""); |
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797 |
3712
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798 std::unique_ptr<MergeStudyJob> job(new MergeStudyJob(context, study)); |
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799 job->SetOrigin(call); |
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800 |
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801 std::vector<std::string> resources; |
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802 SerializationToolbox::ReadArrayOfStrings(resources, request, "Resources"); |
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803 |
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804 for (size_t i = 0; i < resources.size(); i++) |
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805 { |
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806 job->AddSource(resources[i]); |
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807 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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808 |
2860 | 809 job->AddTrailingStep(); |
810 | |
2853
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811 static const char* KEEP_SOURCE = "KeepSource"; |
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812 if (request.isMember(KEEP_SOURCE)) |
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813 { |
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814 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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815 } |
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816 |
2869 | 817 OrthancRestApi::GetApi(call).SubmitCommandsJob |
818 (call, job.release(), true /* synchronous by default */, request); | |
2853
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819 } |
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820 |
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821 |
751
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822 void OrthancRestApi::RegisterAnonymizeModify() |
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823 { |
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824 Register("/instances/{id}/modify", ModifyInstance); |
2639 | 825 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>); |
826 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>); | |
827 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>); | |
751
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828 |
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829 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2639 | 830 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>); |
831 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>); | |
832 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>); | |
796
e7b1ca0f1e04
creation of dicom files
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833 |
1120
009dce4ea2f6
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834 Register("/tools/create-dicom", CreateDicom); |
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835 |
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836 Register("/studies/{id}/split", SplitStudy); |
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837 Register("/studies/{id}/merge", MergeStudy); |
751
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838 } |
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diff
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839 } |