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annotate Core/DicomFormat/DicomMap.h @ 3912:7610af1532c3 transcoding

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prototyping automated transcoding of incoming DICOM files
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 08 May 2020 13:43:50 +0200
parents e7003b2203a7
children f9863630ec7f
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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33
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34 #pragma once
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35
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36 #include "DicomTag.h"
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37 #include "DicomValue.h"
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38 #include "../Enumerations.h"
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39
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40 #include <set>
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41 #include <map>
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42 #include <json/json.h>
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43
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44 namespace Orthanc
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45 {
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46 class DicomMap : public boost::noncopyable
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47 {
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48 public:
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49 typedef std::map<DicomTag, DicomValue*> Content;
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50
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51 private:
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52 friend class DicomArray;
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53 friend class FromDcmtkBridge;
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54 friend class ParsedDicomFile;
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56 Content content_;
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58 // Warning: This takes the ownership of "value"
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59 void SetValueInternal(uint16_t group,
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60 uint16_t element,
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61 DicomValue* value);
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62
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63 static void GetMainDicomTagsInternal(std::set<DicomTag>& result,
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64 ResourceType level);
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66 public:
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67 DicomMap()
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68 {
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69 }
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71 ~DicomMap()
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72 {
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73 Clear();
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74 }
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76 size_t GetSize() const
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77 {
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78 return content_.size();
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79 }
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80
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81 DicomMap* Clone() const;
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82
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83 void Assign(const DicomMap& other);
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85 void Clear();
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86
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87 void SetNullValue(uint16_t group,
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88 uint16_t element)
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89 {
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90 SetValueInternal(group, element, new DicomValue);
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91 }
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92
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93 void SetNullValue(const DicomTag& tag)
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94 {
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95 SetValueInternal(tag.GetGroup(), tag.GetElement(), new DicomValue);
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96 }
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97
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98 void SetValue(uint16_t group,
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99 uint16_t element,
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100 const DicomValue& value)
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101 {
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102 SetValueInternal(group, element, value.Clone());
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103 }
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104
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105 void SetValue(const DicomTag& tag,
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106 const DicomValue& value)
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107 {
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108 SetValueInternal(tag.GetGroup(), tag.GetElement(), value.Clone());
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109 }
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110
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111 void SetValue(const DicomTag& tag,
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112 const std::string& str,
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113 bool isBinary)
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114 {
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115 SetValueInternal(tag.GetGroup(), tag.GetElement(), new DicomValue(str, isBinary));
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116 }
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117
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118 void SetValue(uint16_t group,
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119 uint16_t element,
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120 const std::string& str,
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121 bool isBinary)
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122 {
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123 SetValueInternal(group, element, new DicomValue(str, isBinary));
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124 }
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125
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126 bool HasTag(uint16_t group, uint16_t element) const
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127 {
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128 return HasTag(DicomTag(group, element));
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129 }
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130
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131 bool HasTag(const DicomTag& tag) const
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132 {
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133 return content_.find(tag) != content_.end();
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134 }
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135
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136 const DicomValue& GetValue(uint16_t group, uint16_t element) const
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137 {
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138 return GetValue(DicomTag(group, element));
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139 }
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140
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141 const DicomValue& GetValue(const DicomTag& tag) const;
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142
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143 // DO NOT delete the returned value!
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144 const DicomValue* TestAndGetValue(uint16_t group, uint16_t element) const
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145 {
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146 return TestAndGetValue(DicomTag(group, element));
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147 }
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148
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149 // DO NOT delete the returned value!
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150 const DicomValue* TestAndGetValue(const DicomTag& tag) const;
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151
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152 void Remove(const DicomTag& tag);
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153
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154 void ExtractPatientInformation(DicomMap& result) const;
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155
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156 void ExtractStudyInformation(DicomMap& result) const;
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157
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158 void ExtractSeriesInformation(DicomMap& result) const;
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159
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160 void ExtractInstanceInformation(DicomMap& result) const;
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161
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162 static void SetupFindPatientTemplate(DicomMap& result);
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163
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164 static void SetupFindStudyTemplate(DicomMap& result);
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165
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166 static void SetupFindSeriesTemplate(DicomMap& result);
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167
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168 static void SetupFindInstanceTemplate(DicomMap& result);
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169
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170 void CopyTagIfExists(const DicomMap& source,
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171 const DicomTag& tag);
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172
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173 static bool IsMainDicomTag(const DicomTag& tag, ResourceType level);
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174
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175 static bool IsMainDicomTag(const DicomTag& tag);
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176
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177 static void GetMainDicomTags(std::set<DicomTag>& result, ResourceType level);
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178
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179 static void GetMainDicomTags(std::set<DicomTag>& result);
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180
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181 void GetTags(std::set<DicomTag>& tags) const;
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182
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183 static bool IsDicomFile(const void* dicom,
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184 size_t size);
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185
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186 static bool ParseDicomMetaInformation(DicomMap& result,
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187 const void* dicom,
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188 size_t size);
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189
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190 void LogMissingTagsForStore() const;
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191
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192 bool LookupStringValue(std::string& result,
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193 const DicomTag& tag,
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194 bool allowBinary) const;
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195
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196 bool ParseInteger32(int32_t& result,
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197 const DicomTag& tag) const;
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198
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199 bool ParseInteger64(int64_t& result,
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200 const DicomTag& tag) const;
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201
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202 bool ParseUnsignedInteger32(uint32_t& result,
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203 const DicomTag& tag) const;
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204
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205 bool ParseUnsignedInteger64(uint64_t& result,
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206 const DicomTag& tag) const;
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207
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208 bool ParseFloat(float& result,
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209 const DicomTag& tag) const;
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210
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211 bool ParseFirstFloat(float& result,
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212 const DicomTag& tag) const;
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213
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214 bool ParseDouble(double& result,
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215 const DicomTag& tag) const;
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216
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217 void FromDicomAsJson(const Json::Value& dicomAsJson);
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218
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219 void Merge(const DicomMap& other);
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220
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221 void MergeMainDicomTags(const DicomMap& other,
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222 ResourceType level);
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223
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224 void ExtractMainDicomTags(const DicomMap& other);
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225
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226 bool HasOnlyMainDicomTags() const;
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227
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228 void Serialize(Json::Value& target) const;
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229
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230 void Unserialize(const Json::Value& source);
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231
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232 void FromDicomWeb(const Json::Value& source);
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233
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234 std::string GetStringValue(const DicomTag& tag,
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235 const std::string& defaultValue,
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236 bool allowBinary) const;
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237
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238 void RemoveBinaryTags();
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239
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240 void DumpMainDicomTags(Json::Value& target,
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241 ResourceType level) const;
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242
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243 void ParseMainDicomTags(const Json::Value& source,
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244 ResourceType level);
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245
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246 void Print(FILE* fp) const; // For debugging only
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247 };
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248 }