Mercurial > hg > orthanc
annotate OrthancServer/ServerToolbox.cpp @ 2161:7219cdce7bba
spelling: negociate -> negotiate
author | Sebastien Jodogne <s.jodogne@gmail.com> |
---|---|
date | Mon, 21 Nov 2016 09:19:53 +0100 |
parents | 0c09d1af22f3 |
children | e3fd5bc429a2 |
rev | line source |
---|---|
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
1 /** |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
1288
6e7e5ed91c2d
upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
4 * Department, University Hospital of Liege, Belgium |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
5 * |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
6 * This program is free software: you can redistribute it and/or |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
7 * modify it under the terms of the GNU General Public License as |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
8 * published by the Free Software Foundation, either version 3 of the |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
9 * License, or (at your option) any later version. |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
10 * |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
11 * In addition, as a special exception, the copyright holders of this |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
12 * program give permission to link the code of its release with the |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
14 * that use the same license as the "OpenSSL" library), and distribute |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
15 * the linked executables. You must obey the GNU General Public License |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
16 * in all respects for all of the code used other than "OpenSSL". If you |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
17 * modify file(s) with this exception, you may extend this exception to |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
18 * your version of the file(s), but you are not obligated to do so. If |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
19 * you do not wish to do so, delete this exception statement from your |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
20 * version. If you delete this exception statement from all source files |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
21 * in the program, then also delete it here. |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
22 * |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
23 * This program is distributed in the hope that it will be useful, but |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
26 * General Public License for more details. |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
27 * |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
28 * You should have received a copy of the GNU General Public License |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
30 **/ |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
31 |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
32 |
831
84513f2ee1f3
pch for unit tests and server
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
824
diff
changeset
|
33 #include "PrecompiledHeadersServer.h" |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
34 #include "ServerToolbox.h" |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
35 |
1673
0bbcfd9695e5
UpgradeDatabase in the sample plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1669
diff
changeset
|
36 #include "../Core/DicomFormat/DicomArray.h" |
0bbcfd9695e5
UpgradeDatabase in the sample plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1669
diff
changeset
|
37 #include "../Core/FileStorage/StorageAccessor.h" |
1486
f967bdf8534e
refactoring to Logging.h
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1288
diff
changeset
|
38 #include "../Core/Logging.h" |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
39 #include "../Core/OrthancException.h" |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
40 #include "ParsedDicomFile.h" |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
41 |
234 | 42 #include <cassert> |
43 | |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
44 namespace Orthanc |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
45 { |
2120 | 46 namespace ServerToolbox |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
47 { |
2121 | 48 static const DicomTag patientIdentifiers[] = |
49 { | |
50 DICOM_TAG_PATIENT_ID, | |
51 DICOM_TAG_PATIENT_NAME, | |
52 DICOM_TAG_PATIENT_BIRTH_DATE | |
53 }; | |
54 | |
55 static const DicomTag studyIdentifiers[] = | |
56 { | |
57 DICOM_TAG_PATIENT_ID, | |
58 DICOM_TAG_PATIENT_NAME, | |
59 DICOM_TAG_PATIENT_BIRTH_DATE, | |
60 DICOM_TAG_STUDY_INSTANCE_UID, | |
61 DICOM_TAG_ACCESSION_NUMBER, | |
62 DICOM_TAG_STUDY_DESCRIPTION, | |
63 DICOM_TAG_STUDY_DATE | |
64 }; | |
65 | |
66 static const DicomTag seriesIdentifiers[] = | |
67 { | |
68 DICOM_TAG_SERIES_INSTANCE_UID | |
69 }; | |
70 | |
71 static const DicomTag instanceIdentifiers[] = | |
72 { | |
73 DICOM_TAG_SOP_INSTANCE_UID | |
74 }; | |
75 | |
76 | |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
77 void SimplifyTags(Json::Value& target, |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
78 const Json::Value& source, |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
79 DicomToJsonFormat format) |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
80 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
81 assert(source.isObject()); |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
82 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
83 target = Json::objectValue; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
84 Json::Value::Members members = source.getMemberNames(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
85 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
86 for (size_t i = 0; i < members.size(); i++) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
87 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
88 const Json::Value& v = source[members[i]]; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
89 const std::string& type = v["Type"].asString(); |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
90 |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
91 std::string name; |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
92 switch (format) |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
93 { |
1860
c7d70f659190
DicomToJsonFormat_Simple -> DicomToJsonFormat_Human
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1859
diff
changeset
|
94 case DicomToJsonFormat_Human: |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
95 name = v["Name"].asString(); |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
96 break; |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
97 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
98 case DicomToJsonFormat_Short: |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
99 name = members[i]; |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
100 break; |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
101 |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
102 default: |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
103 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
104 } |
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
105 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
106 if (type == "String") |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
107 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
108 target[name] = v["Value"].asString(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
109 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
110 else if (type == "TooLong" || |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
111 type == "Null") |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
112 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
113 target[name] = Json::nullValue; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
114 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
115 else if (type == "Sequence") |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
116 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
117 const Json::Value& array = v["Value"]; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
118 assert(array.isArray()); |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
119 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
120 Json::Value children = Json::arrayValue; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
121 for (Json::Value::ArrayIndex i = 0; i < array.size(); i++) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
122 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
123 Json::Value c; |
1859
4e7c318a3f69
C-FIND SCP will return tags with sequence value representation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1847
diff
changeset
|
124 SimplifyTags(c, array[i], format); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
125 children.append(c); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
126 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
127 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
128 target[name] = children; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
129 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
130 else |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
131 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
132 assert(0); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
133 } |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
134 } |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
135 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
136 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
137 |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
138 static std::string ValueAsString(const DicomMap& summary, |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
139 const DicomTag& tag) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
140 { |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
141 const DicomValue& value = summary.GetValue(tag); |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
142 if (value.IsNull()) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
143 { |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
144 return "(null)"; |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
145 } |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
146 else |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
147 { |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
148 return value.GetContent(); |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
149 } |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
150 } |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
151 |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
152 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
153 void LogMissingRequiredTag(const DicomMap& summary) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
154 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
155 std::string s, t; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
156 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
157 if (summary.HasTag(DICOM_TAG_PATIENT_ID)) |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
158 { |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
159 if (t.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
160 t += ", "; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
161 t += "PatientID=" + ValueAsString(summary, DICOM_TAG_PATIENT_ID); |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
162 } |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
163 else |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
164 { |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
165 if (s.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
166 s += ", "; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
167 s += "PatientID"; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
168 } |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
169 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
170 if (summary.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
171 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
172 if (t.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
173 t += ", "; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
174 t += "StudyInstanceUID=" + ValueAsString(summary, DICOM_TAG_STUDY_INSTANCE_UID); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
175 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
176 else |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
177 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
178 if (s.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
179 s += ", "; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
180 s += "StudyInstanceUID"; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
181 } |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
182 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
183 if (summary.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
184 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
185 if (t.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
186 t += ", "; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
187 t += "SeriesInstanceUID=" + ValueAsString(summary, DICOM_TAG_SERIES_INSTANCE_UID); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
188 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
189 else |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
190 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
191 if (s.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
192 s += ", "; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
193 s += "SeriesInstanceUID"; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
194 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
195 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
196 if (summary.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
197 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
198 if (t.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
199 t += ", "; |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
200 t += "SOPInstanceUID=" + ValueAsString(summary, DICOM_TAG_SOP_INSTANCE_UID); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
201 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
202 else |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
203 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
204 if (s.size() > 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
205 s += ", "; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
206 s += "SOPInstanceUID"; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
207 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
208 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
209 if (t.size() == 0) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
210 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
211 LOG(ERROR) << "Store has failed because all the required tags (" << s << ") are missing (is it a DICOMDIR file?)"; |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
212 } |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
213 else |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
214 { |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
215 LOG(ERROR) << "Store has failed because required tags (" << s << ") are missing for the following instance: " << t; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
216 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
217 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
218 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
219 |
2120 | 220 static void StoreMainDicomTagsInternal(IDatabaseWrapper& database, |
221 int64_t resource, | |
222 const DicomMap& tags) | |
1716
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
223 { |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
224 DicomArray flattened(tags); |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
225 |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
226 for (size_t i = 0; i < flattened.GetSize(); i++) |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
227 { |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
228 const DicomElement& element = flattened.GetElement(i); |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
229 const DicomTag& tag = element.GetTag(); |
1737
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
230 const DicomValue& value = element.GetValue(); |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
231 if (!value.IsNull() && |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
232 !value.IsBinary()) |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
233 { |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
234 database.SetMainDicomTag(resource, tag, element.GetValue().GetContent()); |
ec66a16aa398
removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1725
diff
changeset
|
235 } |
1716
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
236 } |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
237 } |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
238 |
2ca7888f8600
refactoring DicomIdentifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1713
diff
changeset
|
239 |
2123 | 240 static void StoreIdentifiers(IDatabaseWrapper& database, |
241 int64_t resource, | |
242 ResourceType level, | |
243 const DicomMap& map) | |
244 { | |
245 const DicomTag* tags; | |
246 size_t size; | |
247 | |
248 LoadIdentifiers(tags, size, level); | |
249 | |
250 for (size_t i = 0; i < size; i++) | |
251 { | |
252 const DicomValue* value = map.TestAndGetValue(tags[i]); | |
253 if (value != NULL && | |
254 !value->IsNull() && | |
255 !value->IsBinary()) | |
256 { | |
257 std::string s = NormalizeIdentifier(value->GetContent()); | |
258 database.SetIdentifierTag(resource, tags[i], s); | |
259 } | |
260 } | |
261 } | |
262 | |
263 | |
2120 | 264 void StoreMainDicomTags(IDatabaseWrapper& database, |
265 int64_t resource, | |
266 ResourceType level, | |
267 const DicomMap& dicomSummary) | |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
268 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
269 // WARNING: The database should be locked with a transaction! |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
270 |
2121 | 271 StoreIdentifiers(database, resource, level, dicomSummary); |
1745
38dda23c7d7d
LookupIdentifierQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1744
diff
changeset
|
272 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
273 DicomMap tags; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
274 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
275 switch (level) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
276 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
277 case ResourceType_Patient: |
1745
38dda23c7d7d
LookupIdentifierQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1744
diff
changeset
|
278 dicomSummary.ExtractPatientInformation(tags); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
279 break; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
280 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
281 case ResourceType_Study: |
1717
3926e6317a43
SetIdentifierTagInternal
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1716
diff
changeset
|
282 // Duplicate the patient tags at the study level (new in Orthanc 0.9.5 - db v6) |
1745
38dda23c7d7d
LookupIdentifierQuery
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1744
diff
changeset
|
283 dicomSummary.ExtractPatientInformation(tags); |
2120 | 284 StoreMainDicomTagsInternal(database, resource, tags); |
1717
3926e6317a43
SetIdentifierTagInternal
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1716
diff
changeset
|
285 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
286 dicomSummary.ExtractStudyInformation(tags); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
287 break; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
288 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
289 case ResourceType_Series: |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
290 dicomSummary.ExtractSeriesInformation(tags); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
291 break; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
292 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
293 case ResourceType_Instance: |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
294 dicomSummary.ExtractInstanceInformation(tags); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
295 break; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
296 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
297 default: |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
298 throw OrthancException(ErrorCode_InternalError); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
299 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
300 |
2120 | 301 StoreMainDicomTagsInternal(database, resource, tags); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
302 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
303 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
304 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
305 bool FindOneChildInstance(int64_t& result, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
306 IDatabaseWrapper& database, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
307 int64_t resource, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
308 ResourceType type) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
309 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
310 for (;;) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
311 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
312 if (type == ResourceType_Instance) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
313 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
314 result = resource; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
315 return true; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
316 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
317 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
318 std::list<int64_t> children; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
319 database.GetChildrenInternalId(children, resource); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
320 if (children.empty()) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
321 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
322 return false; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
323 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
324 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
325 resource = children.front(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
326 type = GetChildResourceType(type); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
327 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
328 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
329 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
330 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
331 void ReconstructMainDicomTags(IDatabaseWrapper& database, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
332 IStorageArea& storageArea, |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
333 ResourceType level) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
334 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
335 // WARNING: The database should be locked with a transaction! |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
336 |
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
337 // TODO: This function might consume much memory if level == |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
338 // ResourceType_Instance. To improve this, first download the |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
339 // list of studies, then remove the instances for each single |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
340 // study (check out OrthancRestApi::InvalidateTags for an |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
341 // example). Take this improvement into consideration for the |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
342 // next upgrade of the database schema. |
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2123
diff
changeset
|
343 |
1669
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
344 const char* plural = NULL; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
345 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
346 switch (level) |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
347 { |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
348 case ResourceType_Patient: |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
349 plural = "patients"; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
350 break; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
351 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
352 case ResourceType_Study: |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
353 plural = "studies"; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
354 break; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
355 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
356 case ResourceType_Series: |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
357 plural = "series"; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
358 break; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
359 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
360 case ResourceType_Instance: |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
361 plural = "instances"; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
362 break; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
363 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
364 default: |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
365 throw OrthancException(ErrorCode_InternalError); |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
366 } |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
367 |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
368 LOG(WARNING) << "Upgrade: Reconstructing the main DICOM tags of all the " << plural << "..."; |
a412ad57f0f9
refactoring of sample plugins, OrthancPluginReconstructMainDicomTags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
369 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
370 std::list<std::string> resources; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
371 database.GetAllPublicIds(resources, level); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
372 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
373 for (std::list<std::string>::const_iterator |
1847 | 374 it = resources.begin(); it != resources.end(); ++it) |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
375 { |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
376 // Locate the resource and one of its child instances |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
377 int64_t resource, instance; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
378 ResourceType tmp; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
379 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
380 if (!database.LookupResource(resource, tmp, *it) || |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
381 tmp != level || |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
382 !FindOneChildInstance(instance, database, resource, level)) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
383 { |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
384 LOG(ERROR) << "Cannot find an instance for " << EnumerationToString(level) |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
385 << " with identifier " << *it; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
386 throw OrthancException(ErrorCode_InternalError); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
387 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
388 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
389 // Get the DICOM file attached to some instances in the resource |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
390 FileInfo attachment; |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
391 if (!database.LookupAttachment(attachment, instance, FileContentType_Dicom)) |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
392 { |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
393 LOG(ERROR) << "Cannot retrieve the DICOM file associated with instance " << database.GetPublicId(instance); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
394 throw OrthancException(ErrorCode_InternalError); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
395 } |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
396 |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
397 try |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
398 { |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
399 // Read and parse the content of the DICOM file |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
400 StorageAccessor accessor(storageArea); |
1673
0bbcfd9695e5
UpgradeDatabase in the sample plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1669
diff
changeset
|
401 |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
402 std::string content; |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
403 accessor.Read(content, attachment); |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
404 |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
405 ParsedDicomFile dicom(content); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
406 |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
407 // Update the tags of this resource |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
408 DicomMap dicomSummary; |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
409 dicom.Convert(dicomSummary); |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
410 |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
411 database.ClearMainDicomTags(resource); |
2120 | 412 StoreMainDicomTags(database, resource, level, dicomSummary); |
1870
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
413 } |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
414 catch (OrthancException&) |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
415 { |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
416 LOG(ERROR) << "Cannot decode the DICOM file with UUID " << attachment.GetUuid() |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
417 << " associated with instance " << database.GetPublicId(instance); |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
418 throw; |
a6c431193c79
Improved logging information if upgrade fails
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1860
diff
changeset
|
419 } |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
420 } |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
421 } |
2121 | 422 |
423 | |
424 void LoadIdentifiers(const DicomTag*& tags, | |
425 size_t& size, | |
426 ResourceType level) | |
427 { | |
428 switch (level) | |
429 { | |
430 case ResourceType_Patient: | |
431 tags = patientIdentifiers; | |
432 size = sizeof(patientIdentifiers) / sizeof(DicomTag); | |
433 break; | |
434 | |
435 case ResourceType_Study: | |
436 tags = studyIdentifiers; | |
437 size = sizeof(studyIdentifiers) / sizeof(DicomTag); | |
438 break; | |
439 | |
440 case ResourceType_Series: | |
441 tags = seriesIdentifiers; | |
442 size = sizeof(seriesIdentifiers) / sizeof(DicomTag); | |
443 break; | |
444 | |
445 case ResourceType_Instance: | |
446 tags = instanceIdentifiers; | |
447 size = sizeof(instanceIdentifiers) / sizeof(DicomTag); | |
448 break; | |
449 | |
450 default: | |
451 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
452 } | |
453 } | |
454 | |
455 | |
456 std::string NormalizeIdentifier(const std::string& value) | |
457 { | |
458 std::string t; | |
459 t.reserve(value.size()); | |
460 | |
461 for (size_t i = 0; i < value.size(); i++) | |
462 { | |
463 if (value[i] == '%' || | |
464 value[i] == '_') | |
465 { | |
466 t.push_back(' '); // These characters might break wildcard queries in SQL | |
467 } | |
468 else if (isascii(value[i]) && | |
469 !iscntrl(value[i]) && | |
470 (!isspace(value[i]) || value[i] == ' ')) | |
471 { | |
472 t.push_back(value[i]); | |
473 } | |
474 } | |
475 | |
476 Toolbox::ToUpperCase(t); | |
477 | |
478 return Toolbox::StripSpaces(t); | |
479 } | |
480 | |
481 | |
482 bool IsIdentifier(const DicomTag& tag, | |
483 ResourceType level) | |
484 { | |
485 const DicomTag* tags; | |
486 size_t size; | |
487 | |
488 LoadIdentifiers(tags, size, level); | |
489 | |
490 for (size_t i = 0; i < size; i++) | |
491 { | |
492 if (tag == tags[i]) | |
493 { | |
494 return true; | |
495 } | |
496 } | |
497 | |
498 return false; | |
499 } | |
213
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
500 } |
4ce7fdcc8879
access to tags, simplified-tags and file of an instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
501 } |