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annotate Plugins/Samples/AutomatedJpeg2kCompression/Plugin.cpp @ 3508:70524b4acc72

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Name of temporary files now include the process ID to ease design of scripts cleaning /tmp
author Sebastien Jodogne <s.jodogne@gmail.com>
date Thu, 29 Aug 2019 11:41:26 +0200
parents 4e43e67f8ecf
children 94f4a18a79cc
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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4e43e67f8ecf preparing for 2019
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * This program is distributed in the hope that it will be useful, but
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 * General Public License for more details.
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16 *
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17 * You should have received a copy of the GNU General Public License
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18 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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19 **/
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20
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21
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22 #include <orthanc/OrthancCPlugin.h>
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23
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24 #include <string>
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25
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26 static OrthancPluginContext* context_ = NULL;
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27
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28
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29 static bool ReadFile(std::string& result,
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30 const std::string& path)
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31 {
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32 OrthancPluginMemoryBuffer tmp;
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33 if (OrthancPluginReadFile(context_, &tmp, path.c_str()) == OrthancPluginErrorCode_Success)
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34 {
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35 result.assign(reinterpret_cast<const char*>(tmp.data), tmp.size);
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36 OrthancPluginFreeMemoryBuffer(context_, &tmp);
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37 return true;
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38 }
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39 else
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40 {
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41 return false;
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42 }
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43 }
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44
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45
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46 OrthancPluginErrorCode OnStoredCallback(OrthancPluginDicomInstance* instance,
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47 const char* instanceId)
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48 {
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49 char buffer[1024];
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50 sprintf(buffer, "Just received a DICOM instance of size %d and ID %s from origin %d (AET %s)",
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51 (int) OrthancPluginGetInstanceSize(context_, instance), instanceId,
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52 OrthancPluginGetInstanceOrigin(context_, instance),
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53 OrthancPluginGetInstanceRemoteAet(context_, instance));
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54 OrthancPluginLogInfo(context_, buffer);
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55
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56 if (OrthancPluginGetInstanceOrigin(context_, instance) == OrthancPluginInstanceOrigin_Plugin)
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57 {
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58 // Do not compress twice the same file
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59 return OrthancPluginErrorCode_Success;
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60 }
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61
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62 // Write the uncompressed DICOM content to some temporary file
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63 std::string uncompressed = "uncompressed-" + std::string(instanceId) + ".dcm";
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64 OrthancPluginErrorCode error = OrthancPluginWriteFile(context_, uncompressed.c_str(),
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65 OrthancPluginGetInstanceData(context_, instance),
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66 OrthancPluginGetInstanceSize(context_, instance));
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67 if (error)
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68 {
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69 return error;
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70 }
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71
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72 // Remove the original DICOM instance
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73 std::string uri = "/instances/" + std::string(instanceId);
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74 error = OrthancPluginRestApiDelete(context_, uri.c_str());
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75 if (error)
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76 {
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77 return error;
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78 }
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79
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80 // Path to the temporary file that will contain the compressed DICOM content
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81 std::string compressed = "compressed-" + std::string(instanceId) + ".dcm";
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82
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83 // Compress to JPEG2000 using gdcm
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84 std::string command1 = "gdcmconv --j2k " + uncompressed + " " + compressed;
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85
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86 // Generate a new SOPInstanceUID for the JPEG2000 file, as gdcmconv
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87 // does not do this by itself
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88 std::string command2 = "dcmodify --no-backup -gin " + compressed;
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89
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90 // Make the required system calls
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91 system(command1.c_str());
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92 system(command2.c_str());
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93
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94 // Read the result of the JPEG2000 compression
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95 std::string j2k;
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96 bool ok = ReadFile(j2k, compressed);
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97
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98 // Remove the two temporary files
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99 remove(compressed.c_str());
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100 remove(uncompressed.c_str());
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101
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102 if (!ok)
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103 {
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104 return OrthancPluginErrorCode_Plugin;
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105 }
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106
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107 // Upload the JPEG2000 file through the REST API
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108 OrthancPluginMemoryBuffer tmp;
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109 if (OrthancPluginRestApiPost(context_, &tmp, "/instances", j2k.c_str(), j2k.size()))
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110 {
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111 ok = false;
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112 }
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113
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114 if (ok)
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115 {
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116 OrthancPluginFreeMemoryBuffer(context_, &tmp);
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117 }
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118
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119 return ok ? OrthancPluginErrorCode_Success : OrthancPluginErrorCode_Plugin;
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120 }
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121
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122
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123 extern "C"
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124 {
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125 ORTHANC_PLUGINS_API int32_t OrthancPluginInitialize(OrthancPluginContext* c)
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126 {
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127 context_ = c;
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128
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129 /* Check the version of the Orthanc core */
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130 if (OrthancPluginCheckVersion(c) == 0)
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131 {
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132 char info[1024];
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133 sprintf(info, "Your version of Orthanc (%s) must be above %d.%d.%d to run this plugin",
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134 context_->orthancVersion,
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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135 ORTHANC_PLUGINS_MINIMAL_MAJOR_NUMBER,
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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136 ORTHANC_PLUGINS_MINIMAL_MINOR_NUMBER,
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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137 ORTHANC_PLUGINS_MINIMAL_REVISION_NUMBER);
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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138 OrthancPluginLogError(context_, info);
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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139 return -1;
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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140 }
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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141
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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142 OrthancPluginRegisterOnStoredInstanceCallback(context_, OnStoredCallback);
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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143
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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144 return 0;
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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145 }
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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146
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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147
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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148 ORTHANC_PLUGINS_API void OrthancPluginFinalize()
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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149 {
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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150 }
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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151
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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152
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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153 ORTHANC_PLUGINS_API const char* OrthancPluginGetName()
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
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154 {
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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155 return "sample-jpeg2k";
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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156 }
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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157
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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158
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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159 ORTHANC_PLUGINS_API const char* OrthancPluginGetVersion()
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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160 {
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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161 return "0.0";
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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162 }
87c069c94ac9 plugin sample: automated jpeg2k compression
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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163 }