Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 489:6ad76c3f0efd Orthanc-0.6.0
set version
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 16 Jul 2013 15:13:36 +0200 |
| parents | 23e5b35e3c5c |
| children | 3b735fdf320b |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 399 | 3 * Copyright (C) 2012-2013 Medical Physics Department, CHU of Liege, |
| 0 | 4 * Belgium |
| 5 * | |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
| 33 #include "ServerIndex.h" | |
| 34 | |
| 6 | 35 #ifndef NOMINMAX |
| 2 | 36 #define NOMINMAX |
| 6 | 37 #endif |
| 38 | |
| 8 | 39 #include "EmbeddedResources.h" |
| 0 | 40 #include "../Core/Toolbox.h" |
| 41 #include "../Core/Uuid.h" | |
| 42 #include "../Core/DicomFormat/DicomArray.h" | |
| 43 #include "../Core/SQLite/Transaction.h" | |
| 44 #include "FromDcmtkBridge.h" | |
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45 #include "ServerContext.h" |
| 0 | 46 |
| 47 #include <boost/lexical_cast.hpp> | |
| 48 #include <stdio.h> | |
| 108 | 49 #include <glog/logging.h> |
| 0 | 50 |
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51 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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52 |
| 62 | 53 namespace Orthanc |
| 0 | 54 { |
| 55 namespace Internals | |
| 56 { | |
| 202 | 57 class ServerIndexListener : public IServerIndexListener |
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58 { |
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59 private: |
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60 ServerContext& context_; |
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61 bool hasRemainingLevel_; |
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62 ResourceType remainingType_; |
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63 std::string remainingPublicId_; |
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64 std::list<std::string> pendingFilesToRemove_; |
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65 uint64_t sizeOfFilesToRemove_; |
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66 |
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67 public: |
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68 ServerIndexListener(ServerContext& context) : |
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69 context_(context) |
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70 { |
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71 Reset(); |
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72 assert(ResourceType_Patient < ResourceType_Study && |
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73 ResourceType_Study < ResourceType_Series && |
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74 ResourceType_Series < ResourceType_Instance); |
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75 } |
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76 |
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77 void Reset() |
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78 { |
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79 sizeOfFilesToRemove_ = 0; |
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80 hasRemainingLevel_ = false; |
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81 pendingFilesToRemove_.clear(); |
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82 } |
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83 |
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84 uint64_t GetSizeOfFilesToRemove() |
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85 { |
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86 return sizeOfFilesToRemove_; |
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87 } |
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88 |
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89 void CommitFilesToRemove() |
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90 { |
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91 for (std::list<std::string>::iterator |
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92 it = pendingFilesToRemove_.begin(); |
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93 it != pendingFilesToRemove_.end(); it++) |
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94 { |
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95 context_.RemoveFile(*it); |
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96 } |
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97 } |
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98 |
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99 virtual void SignalRemainingAncestor(ResourceType parentType, |
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100 const std::string& publicId) |
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101 { |
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102 LOG(INFO) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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103 |
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104 if (hasRemainingLevel_) |
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105 { |
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106 if (parentType < remainingType_) |
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107 { |
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108 remainingType_ = parentType; |
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109 remainingPublicId_ = publicId; |
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110 } |
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111 } |
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112 else |
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113 { |
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114 hasRemainingLevel_ = true; |
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115 remainingType_ = parentType; |
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116 remainingPublicId_ = publicId; |
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117 } |
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118 } |
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119 |
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120 virtual void SignalFileDeleted(const FileInfo& info) |
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121 { |
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122 assert(Toolbox::IsUuid(info.GetUuid())); |
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123 pendingFilesToRemove_.push_back(info.GetUuid()); |
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124 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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125 } |
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126 |
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127 bool HasRemainingLevel() const |
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128 { |
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129 return hasRemainingLevel_; |
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130 } |
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131 |
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132 ResourceType GetRemainingType() const |
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133 { |
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134 assert(HasRemainingLevel()); |
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135 return remainingType_; |
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136 } |
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137 |
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138 const std::string& GetRemainingPublicId() const |
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139 { |
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140 assert(HasRemainingLevel()); |
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141 return remainingPublicId_; |
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142 } |
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143 }; |
| 0 | 144 } |
| 145 | |
| 146 | |
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147 class ServerIndex::Transaction |
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148 { |
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149 private: |
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150 ServerIndex& index_; |
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151 std::auto_ptr<SQLite::Transaction> transaction_; |
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152 bool isCommitted_; |
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153 |
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154 public: |
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155 Transaction(ServerIndex& index) : |
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156 index_(index), |
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157 isCommitted_(false) |
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158 { |
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159 assert(index_.currentStorageSize_ == index_.db_->GetTotalCompressedSize()); |
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160 |
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161 index_.listener_->Reset(); |
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162 transaction_.reset(index_.db_->StartTransaction()); |
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163 transaction_->Begin(); |
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164 } |
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165 |
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166 void Commit(uint64_t sizeOfAddedFiles) |
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167 { |
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168 if (!isCommitted_) |
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169 { |
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170 transaction_->Commit(); |
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171 |
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172 // We can remove the files once the SQLite transaction has |
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173 // been successfully committed. Some files might have to be |
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174 // deleted because of recycling. |
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175 index_.listener_->CommitFilesToRemove(); |
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176 |
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177 index_.currentStorageSize_ += sizeOfAddedFiles; |
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178 |
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179 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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180 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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181 |
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182 assert(index_.currentStorageSize_ == index_.db_->GetTotalCompressedSize()); |
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183 |
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184 isCommitted_ = true; |
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185 } |
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186 } |
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187 }; |
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188 |
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189 |
| 212 | 190 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 191 const std::string& uuid, |
| 202 | 192 ResourceType expectedType) |
| 0 | 193 { |
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194 boost::mutex::scoped_lock lock(mutex_); |
| 202 | 195 listener_->Reset(); |
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196 |
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197 Transaction t(*this); |
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198 |
| 202 | 199 int64_t id; |
| 200 ResourceType type; | |
| 201 if (!db_->LookupResource(uuid, id, type) || | |
| 202 expectedType != type) | |
| 0 | 203 { |
| 204 return false; | |
| 205 } | |
| 202 | 206 |
| 207 db_->DeleteResource(id); | |
| 0 | 208 |
| 202 | 209 if (listener_->HasRemainingLevel()) |
| 0 | 210 { |
| 202 | 211 ResourceType type = listener_->GetRemainingType(); |
| 212 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 213 |
| 214 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 215 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
|
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216 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 217 target["RemainingAncestor"]["ID"] = uuid; |
| 218 } | |
| 219 else | |
| 220 { | |
| 221 target["RemainingAncestor"] = Json::nullValue; | |
| 222 } | |
| 223 | |
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224 t.Commit(0); |
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225 |
| 0 | 226 return true; |
| 227 } | |
| 228 | |
| 229 | |
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230 static void FlushThread(DatabaseWrapper* db, |
| 220 | 231 boost::mutex* mutex, |
| 232 unsigned int sleep) | |
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233 { |
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234 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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235 |
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236 while (1) |
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237 { |
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238 boost::this_thread::sleep(boost::posix_time::seconds(sleep)); |
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239 boost::mutex::scoped_lock lock(*mutex); |
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240 db->FlushToDisk(); |
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241 } |
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242 } |
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243 |
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244 |
| 433 | 245 static void ComputeExpectedNumberOfInstances(DatabaseWrapper& db, |
| 246 int64_t series, | |
| 247 const DicomMap& dicomSummary) | |
| 248 { | |
| 249 const DicomValue* value; | |
| 250 const DicomValue* value2; | |
| 251 | |
| 252 try | |
| 253 { | |
| 254 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && | |
| 255 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 256 { | |
| 257 // Patch for series with temporal positions thanks to Will Ryder | |
| 258 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
| 259 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 260 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
| 261 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 262 } | |
| 263 | |
| 264 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 265 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 266 { | |
| 267 // Support of Cardio-PET images | |
| 268 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
| 269 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 270 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
| 271 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 272 } | |
| 273 | |
| 274 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 275 { | |
| 276 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
| 277 } | |
| 278 } | |
| 279 catch (boost::bad_lexical_cast) | |
| 280 { | |
| 281 } | |
| 282 } | |
| 283 | |
| 284 | |
|
226
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285 ServerIndex::ServerIndex(ServerContext& context, |
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286 const std::string& dbPath) : |
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287 maximumStorageSize_(0), |
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288 maximumPatients_(0) |
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289 { |
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290 listener_.reset(new Internals::ServerIndexListener(context)); |
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291 |
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292 if (dbPath == ":memory:") |
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293 { |
| 202 | 294 db_.reset(new DatabaseWrapper(*listener_)); |
|
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295 } |
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296 else |
| 0 | 297 { |
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298 boost::filesystem::path p = dbPath; |
|
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299 |
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300 try |
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301 { |
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302 boost::filesystem::create_directories(p); |
|
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303 } |
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304 catch (boost::filesystem::filesystem_error) |
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305 { |
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306 } |
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307 |
| 202 | 308 db_.reset(new DatabaseWrapper(p.string() + "/index", *listener_)); |
| 0 | 309 } |
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310 |
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311 currentStorageSize_ = db_->GetTotalCompressedSize(); |
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312 |
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313 // Initial recycling if the parameters have changed since the last |
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314 // execution of Orthanc |
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315 StandaloneRecycling(); |
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316 |
| 220 | 317 unsigned int sleep; |
| 318 try | |
| 319 { | |
| 320 std::string sleepString = db_->GetGlobalProperty(GlobalProperty_FlushSleep); | |
| 321 sleep = boost::lexical_cast<unsigned int>(sleepString); | |
| 322 } | |
| 323 catch (boost::bad_lexical_cast&) | |
| 324 { | |
| 325 // By default, wait for 10 seconds before flushing | |
| 326 sleep = 10; | |
| 327 } | |
| 328 | |
| 329 flushThread_ = boost::thread(FlushThread, db_.get(), &mutex_, sleep); | |
|
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330 } |
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331 |
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332 |
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333 ServerIndex::~ServerIndex() |
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334 { |
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335 LOG(INFO) << "Stopping the database flushing thread"; |
| 0 | 336 } |
| 337 | |
| 338 | |
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339 StoreStatus ServerIndex::Store(const DicomMap& dicomSummary, |
|
232
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340 const Attachments& attachments, |
|
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341 const std::string& remoteAet) |
| 0 | 342 { |
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343 boost::mutex::scoped_lock lock(mutex_); |
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344 listener_->Reset(); |
| 0 | 345 |
| 178 | 346 DicomInstanceHasher hasher(dicomSummary); |
| 0 | 347 |
| 348 try | |
| 349 { | |
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350 Transaction t(*this); |
| 0 | 351 |
| 202 | 352 // Do nothing if the instance already exists |
| 0 | 353 { |
| 432 | 354 ResourceType type; |
| 355 int64_t tmp; | |
| 356 if (db_->LookupResource(hasher.HashInstance(), tmp, type)) | |
| 357 { | |
| 358 assert(type == ResourceType_Instance); | |
| 359 return StoreStatus_AlreadyStored; | |
| 360 } | |
| 0 | 361 } |
| 362 | |
|
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363 // Ensure there is enough room in the storage for the new instance |
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364 uint64_t instanceSize = 0; |
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365 for (Attachments::const_iterator it = attachments.begin(); |
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366 it != attachments.end(); it++) |
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367 { |
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368 instanceSize += it->GetCompressedSize(); |
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369 } |
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370 |
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371 Recycle(instanceSize, hasher.HashPatient()); |
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372 |
| 202 | 373 // Create the instance |
| 432 | 374 int64_t instance = db_->CreateResource(hasher.HashInstance(), ResourceType_Instance); |
| 202 | 375 |
| 376 DicomMap dicom; | |
| 377 dicomSummary.ExtractInstanceInformation(dicom); | |
| 378 db_->SetMainDicomTags(instance, dicom); | |
| 379 | |
| 432 | 380 // Detect up to which level the patient/study/series/instance |
| 381 // hierarchy must be created | |
| 382 int64_t patient = -1, study = -1, series = -1; | |
| 383 bool isNewPatient = false; | |
| 384 bool isNewStudy = false; | |
| 385 bool isNewSeries = false; | |
| 386 | |
| 0 | 387 { |
| 432 | 388 ResourceType dummy; |
| 389 | |
| 390 if (db_->LookupResource(hasher.HashSeries(), series, dummy)) | |
| 391 { | |
| 392 assert(dummy == ResourceType_Series); | |
| 393 // The patient, the study and the series already exist | |
| 394 | |
| 395 bool ok = (db_->LookupResource(hasher.HashPatient(), patient, dummy) && | |
| 396 db_->LookupResource(hasher.HashStudy(), study, dummy)); | |
| 397 assert(ok); | |
| 398 } | |
| 399 else if (db_->LookupResource(hasher.HashStudy(), study, dummy)) | |
| 400 { | |
| 401 assert(dummy == ResourceType_Study); | |
| 402 | |
| 403 // New series: The patient and the study already exist | |
| 404 isNewSeries = true; | |
| 405 | |
| 406 bool ok = db_->LookupResource(hasher.HashPatient(), patient, dummy); | |
| 407 assert(ok); | |
| 408 } | |
| 409 else if (db_->LookupResource(hasher.HashPatient(), patient, dummy)) | |
| 410 { | |
| 411 assert(dummy == ResourceType_Patient); | |
| 412 | |
| 413 // New study and series: The patient already exist | |
| 414 isNewStudy = true; | |
| 415 isNewSeries = true; | |
| 416 } | |
| 417 else | |
| 418 { | |
| 419 // New patient, study and series: Nothing exists | |
| 420 isNewPatient = true; | |
| 421 isNewStudy = true; | |
| 422 isNewSeries = true; | |
| 423 } | |
| 424 } | |
| 425 | |
| 426 // Create the series if needed | |
| 427 if (isNewSeries) | |
| 428 { | |
| 202 | 429 series = db_->CreateResource(hasher.HashSeries(), ResourceType_Series); |
| 430 dicomSummary.ExtractSeriesInformation(dicom); | |
| 431 db_->SetMainDicomTags(series, dicom); | |
| 432 | 432 } |
| 202 | 433 |
| 432 | 434 // Create the study if needed |
| 435 if (isNewStudy) | |
| 436 { | |
| 437 study = db_->CreateResource(hasher.HashStudy(), ResourceType_Study); | |
| 438 dicomSummary.ExtractStudyInformation(dicom); | |
| 439 db_->SetMainDicomTags(study, dicom); | |
| 440 } | |
| 441 | |
| 442 // Create the patient if needed | |
| 443 if (isNewPatient) | |
| 444 { | |
| 445 patient = db_->CreateResource(hasher.HashPatient(), ResourceType_Patient); | |
| 446 dicomSummary.ExtractPatientInformation(dicom); | |
| 447 db_->SetMainDicomTags(patient, dicom); | |
| 448 } | |
| 202 | 449 |
| 432 | 450 // Create the parent-to-child links |
| 451 db_->AttachChild(series, instance); | |
| 452 | |
| 453 if (isNewSeries) | |
| 454 { | |
| 455 db_->AttachChild(study, series); | |
| 0 | 456 } |
| 432 | 457 |
| 458 if (isNewStudy) | |
| 0 | 459 { |
| 432 | 460 db_->AttachChild(patient, study); |
| 0 | 461 } |
| 462 | |
| 432 | 463 // Sanity checks |
| 464 assert(patient != -1); | |
| 465 assert(study != -1); | |
| 466 assert(series != -1); | |
| 467 assert(instance != -1); | |
| 468 | |
| 202 | 469 // Attach the files to the newly created instance |
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470 for (Attachments::const_iterator it = attachments.begin(); |
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471 it != attachments.end(); it++) |
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472 { |
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473 db_->AddAttachment(instance, *it); |
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474 } |
| 202 | 475 |
| 476 // Attach the metadata | |
| 432 | 477 std::string now = Toolbox::GetNowIsoString(); |
| 478 db_->SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); | |
| 479 db_->SetMetadata(series, MetadataType_LastUpdate, now); | |
| 480 db_->SetMetadata(study, MetadataType_LastUpdate, now); | |
| 481 db_->SetMetadata(patient, MetadataType_LastUpdate, now); | |
| 482 | |
| 202 | 483 db_->SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
| 484 | |
| 485 const DicomValue* value; | |
| 486 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 487 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 488 { |
| 202 | 489 db_->SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
| 0 | 490 } |
| 491 | |
| 202 | 492 if (isNewSeries) |
| 493 { | |
| 433 | 494 ComputeExpectedNumberOfInstances(*db_, series, dicomSummary); |
| 202 | 495 } |
| 496 | |
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497 // Check whether the series of this new instance is now completed |
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498 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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499 if (seriesStatus == SeriesStatus_Complete) |
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500 { |
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501 db_->LogChange(ChangeType_CompletedSeries, series, ResourceType_Series); |
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502 } |
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503 |
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504 t.Commit(instanceSize); |
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505 |
| 0 | 506 return StoreStatus_Success; |
| 507 } | |
| 62 | 508 catch (OrthancException& e) |
| 0 | 509 { |
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510 LOG(ERROR) << "EXCEPTION [" << e.What() << "]" |
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511 << " (SQLite status: " << db_->GetErrorMessage() << ")"; |
| 0 | 512 } |
| 513 | |
| 514 return StoreStatus_Failure; | |
| 515 } | |
| 516 | |
| 517 | |
| 238 | 518 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 519 { |
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520 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 521 target = Json::objectValue; |
| 0 | 522 |
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523 uint64_t cs = currentStorageSize_; |
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524 assert(cs == db_->GetTotalCompressedSize()); |
| 238 | 525 uint64_t us = db_->GetTotalUncompressedSize(); |
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526 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 527 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
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528 target["TotalDiskSizeMB"] = boost::lexical_cast<unsigned int>(cs / MEGA_BYTES); |
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529 target["TotalUncompressedSizeMB"] = boost::lexical_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 530 |
| 531 target["CountPatients"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Patient)); | |
| 532 target["CountStudies"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Study)); | |
| 533 target["CountSeries"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Series)); | |
| 534 target["CountInstances"] = static_cast<unsigned int>(db_->GetResourceCount(ResourceType_Instance)); | |
| 535 } | |
| 536 | |
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537 |
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538 |
| 199 | 539 SeriesStatus ServerIndex::GetSeriesStatus(int id) |
| 540 { | |
| 541 // Get the expected number of instances in this series (from the metadata) | |
| 202 | 542 std::string s = db_->GetMetadata(id, MetadataType_Series_ExpectedNumberOfInstances); |
| 199 | 543 |
| 544 size_t expected; | |
| 545 try | |
| 546 { | |
| 547 expected = boost::lexical_cast<size_t>(s); | |
| 548 if (expected < 0) | |
| 549 { | |
| 550 return SeriesStatus_Unknown; | |
| 551 } | |
| 552 } | |
| 553 catch (boost::bad_lexical_cast&) | |
| 554 { | |
| 555 return SeriesStatus_Unknown; | |
| 556 } | |
| 557 | |
| 558 // Loop over the instances of this series | |
| 559 std::list<int64_t> children; | |
| 202 | 560 db_->GetChildrenInternalId(children, id); |
| 199 | 561 |
| 562 std::set<size_t> instances; | |
| 563 for (std::list<int64_t>::const_iterator | |
| 564 it = children.begin(); it != children.end(); it++) | |
| 565 { | |
| 566 // Get the index of this instance in the series | |
| 202 | 567 s = db_->GetMetadata(*it, MetadataType_Instance_IndexInSeries); |
| 199 | 568 size_t index; |
| 569 try | |
| 570 { | |
| 571 index = boost::lexical_cast<size_t>(s); | |
| 572 } | |
| 573 catch (boost::bad_lexical_cast&) | |
| 574 { | |
| 575 return SeriesStatus_Unknown; | |
| 576 } | |
| 577 | |
| 578 if (index <= 0 || index > expected) | |
| 579 { | |
| 580 // Out-of-range instance index | |
| 581 return SeriesStatus_Inconsistent; | |
| 582 } | |
| 583 | |
| 584 if (instances.find(index) != instances.end()) | |
| 585 { | |
| 586 // Twice the same instance index | |
| 587 return SeriesStatus_Inconsistent; | |
| 588 } | |
| 589 | |
| 590 instances.insert(index); | |
| 591 } | |
| 592 | |
| 593 if (instances.size() == expected) | |
| 594 { | |
| 595 return SeriesStatus_Complete; | |
| 596 } | |
| 597 else | |
| 598 { | |
| 599 return SeriesStatus_Missing; | |
| 600 } | |
| 601 } | |
| 602 | |
| 603 | |
| 604 | |
| 202 | 605 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
| 606 int64_t resourceId) | |
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607 { |
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608 DicomMap tags; |
| 202 | 609 db_->GetMainDicomTags(tags, resourceId); |
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610 target["MainDicomTags"] = Json::objectValue; |
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611 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags); |
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612 } |
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613 |
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614 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 615 const std::string& publicId, |
| 616 ResourceType expectedType) | |
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617 { |
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618 result = Json::objectValue; |
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619 |
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620 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 621 |
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622 // Lookup for the requested resource |
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623 int64_t id; |
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624 ResourceType type; |
| 202 | 625 if (!db_->LookupResource(publicId, id, type) || |
| 199 | 626 type != expectedType) |
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627 { |
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628 return false; |
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629 } |
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630 |
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631 // Find the parent resource (if it exists) |
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632 if (type != ResourceType_Patient) |
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633 { |
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634 int64_t parentId; |
| 202 | 635 if (!db_->LookupParent(parentId, id)) |
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636 { |
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637 throw OrthancException(ErrorCode_InternalError); |
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638 } |
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639 |
| 202 | 640 std::string parent = db_->GetPublicId(parentId); |
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641 |
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642 switch (type) |
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643 { |
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644 case ResourceType_Study: |
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645 result["ParentPatient"] = parent; |
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646 break; |
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647 |
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648 case ResourceType_Series: |
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649 result["ParentStudy"] = parent; |
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650 break; |
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651 |
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652 case ResourceType_Instance: |
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653 result["ParentSeries"] = parent; |
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654 break; |
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655 |
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656 default: |
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657 throw OrthancException(ErrorCode_InternalError); |
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658 } |
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659 } |
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660 |
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661 // List the children resources |
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662 std::list<std::string> children; |
| 202 | 663 db_->GetChildrenPublicId(children, id); |
|
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664 |
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665 if (type != ResourceType_Instance) |
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666 { |
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667 Json::Value c = Json::arrayValue; |
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668 |
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669 for (std::list<std::string>::const_iterator |
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670 it = children.begin(); it != children.end(); it++) |
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671 { |
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672 c.append(*it); |
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673 } |
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674 |
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675 switch (type) |
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676 { |
|
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677 case ResourceType_Patient: |
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678 result["Studies"] = c; |
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679 break; |
|
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680 |
|
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681 case ResourceType_Study: |
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682 result["Series"] = c; |
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683 break; |
|
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684 |
|
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685 case ResourceType_Series: |
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686 result["Instances"] = c; |
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687 break; |
|
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688 |
|
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689 default: |
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690 throw OrthancException(ErrorCode_InternalError); |
|
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691 } |
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692 } |
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693 |
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694 // Set the resource type |
|
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695 switch (type) |
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696 { |
|
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697 case ResourceType_Patient: |
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698 result["Type"] = "Patient"; |
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699 break; |
|
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|
700 |
|
269
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701 case ResourceType_Study: |
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702 result["Type"] = "Study"; |
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703 break; |
| 199 | 704 |
|
269
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705 case ResourceType_Series: |
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706 { |
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|
707 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
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diff
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|
708 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
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|
709 |
|
269
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|
710 int i; |
|
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|
711 if (db_->GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
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712 result["ExpectedNumberOfInstances"] = i; |
|
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713 else |
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|
714 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
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diff
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|
715 |
|
269
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diff
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|
716 break; |
|
200
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diff
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|
717 } |
|
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diff
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|
718 |
|
269
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diff
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|
719 case ResourceType_Instance: |
|
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|
720 { |
|
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|
721 result["Type"] = "Instance"; |
|
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|
722 |
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|
723 FileInfo attachment; |
|
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diff
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|
724 if (!db_->LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
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|
725 { |
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|
726 throw OrthancException(ErrorCode_InternalError); |
|
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|
727 } |
|
200
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diff
changeset
|
728 |
|
269
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|
729 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
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|
730 result["FileUuid"] = attachment.GetUuid(); |
|
200
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|
731 |
|
269
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|
732 int i; |
|
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|
733 if (db_->GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
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|
734 result["IndexInSeries"] = i; |
|
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|
735 else |
|
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|
736 result["IndexInSeries"] = Json::nullValue; |
|
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|
737 |
|
269
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|
738 break; |
|
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|
739 } |
|
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|
740 |
|
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|
741 default: |
|
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|
742 throw OrthancException(ErrorCode_InternalError); |
|
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|
743 } |
|
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|
744 |
|
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|
745 // Record the remaining information |
|
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|
746 result["ID"] = publicId; |
| 202 | 747 MainDicomTagsToJson(result, id); |
|
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|
748 |
| 315 | 749 std::string tmp; |
| 750 | |
| 751 tmp = db_->GetMetadata(id, MetadataType_AnonymizedFrom); | |
| 752 if (tmp.size() != 0) | |
| 753 result["AnonymizedFrom"] = tmp; | |
| 754 | |
| 755 tmp = db_->GetMetadata(id, MetadataType_ModifiedFrom); | |
| 756 if (tmp.size() != 0) | |
| 757 result["ModifiedFrom"] = tmp; | |
| 758 | |
|
198
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|
759 return true; |
|
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|
760 } |
|
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|
761 |
| 0 | 762 |
|
232
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changeset
|
763 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
|
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|
764 const std::string& instanceUuid, |
| 233 | 765 FileContentType contentType) |
| 0 | 766 { |
|
206
4453a010d0db
flush to disk thread
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changeset
|
767 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 768 |
|
193
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diff
changeset
|
769 int64_t id; |
|
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192
diff
changeset
|
770 ResourceType type; |
| 202 | 771 if (!db_->LookupResource(instanceUuid, id, type) || |
|
193
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changeset
|
772 type != ResourceType_Instance) |
|
192
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diff
changeset
|
773 { |
|
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diff
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|
774 throw OrthancException(ErrorCode_InternalError); |
|
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changeset
|
775 } |
|
193
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diff
changeset
|
776 |
|
232
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diff
changeset
|
777 if (db_->LookupAttachment(attachment, id, contentType)) |
|
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diff
changeset
|
778 { |
| 233 | 779 assert(attachment.GetContentType() == contentType); |
|
232
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|
780 return true; |
|
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diff
changeset
|
781 } |
|
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diff
changeset
|
782 else |
|
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diff
changeset
|
783 { |
|
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diff
changeset
|
784 return false; |
|
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diff
changeset
|
785 } |
|
192
c56dc32266e0
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191
diff
changeset
|
786 } |
|
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diff
changeset
|
787 |
|
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diff
changeset
|
788 |
|
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diff
changeset
|
789 |
| 0 | 790 void ServerIndex::GetAllUuids(Json::Value& target, |
| 190 | 791 ResourceType resourceType) |
| 0 | 792 { |
|
206
4453a010d0db
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diff
changeset
|
793 boost::mutex::scoped_lock lock(mutex_); |
| 202 | 794 db_->GetAllPublicIds(target, resourceType); |
| 0 | 795 } |
| 796 | |
| 797 | |
| 798 bool ServerIndex::GetChanges(Json::Value& target, | |
| 204 | 799 int64_t since, |
| 0 | 800 unsigned int maxResults) |
| 801 { | |
|
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802 boost::mutex::scoped_lock lock(mutex_); |
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803 db_->GetChanges(target, since, maxResults); |
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804 return true; |
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805 } |
| 0 | 806 |
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807 bool ServerIndex::GetLastChange(Json::Value& target) |
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808 { |
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809 boost::mutex::scoped_lock lock(mutex_); |
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810 db_->GetLastChange(target); |
| 204 | 811 return true; |
| 0 | 812 } |
| 231 | 813 |
| 814 void ServerIndex::LogExportedResource(const std::string& publicId, | |
| 815 const std::string& remoteModality) | |
| 816 { | |
| 817 boost::mutex::scoped_lock lock(mutex_); | |
| 818 | |
| 819 int64_t id; | |
| 820 ResourceType type; | |
| 821 if (!db_->LookupResource(publicId, id, type)) | |
| 822 { | |
| 823 throw OrthancException(ErrorCode_InternalError); | |
| 824 } | |
| 825 | |
| 826 std::string patientId; | |
| 827 std::string studyInstanceUid; | |
| 828 std::string seriesInstanceUid; | |
| 829 std::string sopInstanceUid; | |
| 830 | |
| 831 int64_t currentId = id; | |
| 832 ResourceType currentType = type; | |
| 833 | |
| 834 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 835 bool done = false; | |
| 836 while (!done) | |
| 837 { | |
| 838 DicomMap map; | |
| 839 db_->GetMainDicomTags(map, currentId); | |
| 840 | |
| 841 switch (currentType) | |
| 842 { | |
|
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843 case ResourceType_Patient: |
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844 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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845 done = true; |
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846 break; |
| 231 | 847 |
|
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848 case ResourceType_Study: |
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849 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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850 currentType = ResourceType_Patient; |
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851 break; |
| 231 | 852 |
|
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853 case ResourceType_Series: |
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854 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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855 currentType = ResourceType_Study; |
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856 break; |
| 231 | 857 |
|
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858 case ResourceType_Instance: |
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859 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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860 currentType = ResourceType_Series; |
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861 break; |
| 231 | 862 |
|
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863 default: |
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864 throw OrthancException(ErrorCode_InternalError); |
| 231 | 865 } |
| 866 | |
| 867 // If we have not reached the Patient level, find the parent of | |
| 868 // the current resource | |
| 869 if (!done) | |
| 870 { | |
|
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871 bool ok = db_->LookupParent(currentId, currentId); |
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872 assert(ok); |
| 231 | 873 } |
| 874 } | |
| 875 | |
| 876 // No need for a SQLite::Transaction here, as we only insert 1 record | |
| 877 db_->LogExportedResource(type, | |
| 878 publicId, | |
| 879 remoteModality, | |
| 880 patientId, | |
| 881 studyInstanceUid, | |
| 882 seriesInstanceUid, | |
| 883 sopInstanceUid); | |
| 884 } | |
| 885 | |
| 886 | |
| 887 bool ServerIndex::GetExportedResources(Json::Value& target, | |
| 888 int64_t since, | |
| 889 unsigned int maxResults) | |
| 890 { | |
| 891 boost::mutex::scoped_lock lock(mutex_); | |
| 892 db_->GetExportedResources(target, since, maxResults); | |
| 893 return true; | |
| 894 } | |
|
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895 |
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896 bool ServerIndex::GetLastExportedResource(Json::Value& target) |
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897 { |
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898 boost::mutex::scoped_lock lock(mutex_); |
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899 db_->GetLastExportedResource(target); |
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900 return true; |
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901 } |
|
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902 |
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903 |
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904 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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905 { |
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906 if (maximumStorageSize_ != 0) |
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907 { |
|
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908 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
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909 assert(db_->GetTotalCompressedSize() == currentSize); |
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910 |
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911 if (currentSize + instanceSize > maximumStorageSize_) |
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912 { |
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913 return true; |
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914 } |
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915 } |
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916 |
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917 if (maximumPatients_ != 0) |
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918 { |
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919 uint64_t patientCount = db_->GetResourceCount(ResourceType_Patient); |
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920 if (patientCount > maximumPatients_) |
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921 { |
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922 return true; |
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923 } |
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924 } |
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925 |
|
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926 return false; |
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927 } |
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928 |
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929 |
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930 void ServerIndex::Recycle(uint64_t instanceSize, |
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931 const std::string& newPatientId) |
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932 { |
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933 if (!IsRecyclingNeeded(instanceSize)) |
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934 { |
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935 return; |
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936 } |
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|
937 |
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938 // Check whether other DICOM instances from this patient are |
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939 // already stored |
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940 int64_t patientToAvoid; |
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941 ResourceType type; |
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942 bool hasPatientToAvoid = db_->LookupResource(newPatientId, patientToAvoid, type); |
|
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943 |
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944 if (hasPatientToAvoid && type != ResourceType_Patient) |
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945 { |
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946 throw OrthancException(ErrorCode_InternalError); |
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947 } |
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948 |
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949 // Iteratively select patient to remove until there is enough |
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950 // space in the DICOM store |
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951 int64_t patientToRecycle; |
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952 while (true) |
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953 { |
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954 // If other instances of this patient are already in the store, |
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955 // we must avoid to recycle them |
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956 bool ok = hasPatientToAvoid ? |
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957 db_->SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
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958 db_->SelectPatientToRecycle(patientToRecycle); |
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959 |
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960 if (!ok) |
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961 { |
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962 throw OrthancException(ErrorCode_FullStorage); |
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963 } |
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964 |
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965 LOG(INFO) << "Recycling one patient"; |
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966 db_->DeleteResource(patientToRecycle); |
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967 |
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968 if (!IsRecyclingNeeded(instanceSize)) |
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969 { |
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970 // OK, we're done |
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971 break; |
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972 } |
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973 } |
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974 } |
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975 |
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976 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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977 { |
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978 boost::mutex::scoped_lock lock(mutex_); |
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979 maximumPatients_ = count; |
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980 |
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981 if (count == 0) |
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982 { |
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983 LOG(WARNING) << "No limit on the number of stored patients"; |
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984 } |
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985 else |
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986 { |
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987 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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988 } |
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989 |
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990 StandaloneRecycling(); |
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991 } |
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992 |
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993 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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994 { |
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995 boost::mutex::scoped_lock lock(mutex_); |
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996 maximumStorageSize_ = size; |
|
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997 |
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998 if (size == 0) |
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999 { |
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1000 LOG(WARNING) << "No limit on the size of the storage area"; |
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1001 } |
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1002 else |
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1003 { |
|
440
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1004 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
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1005 } |
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1006 |
|
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1007 StandaloneRecycling(); |
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1008 } |
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1009 |
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1010 void ServerIndex::StandaloneRecycling() |
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1011 { |
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1012 // WARNING: No mutex here, do not include this as a public method |
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1013 Transaction t(*this); |
|
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1014 Recycle(0, ""); |
|
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1015 t.Commit(0); |
|
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1016 } |
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1017 |
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1018 |
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1019 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1020 { |
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1021 boost::mutex::scoped_lock lock(mutex_); |
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1022 |
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1023 // Lookup for the requested resource |
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1024 int64_t id; |
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1025 ResourceType type; |
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1026 if (!db_->LookupResource(publicId, id, type) || |
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1027 type != ResourceType_Patient) |
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1028 { |
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1029 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1030 } |
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1031 |
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1032 return db_->IsProtectedPatient(id); |
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1033 } |
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1034 |
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1035 |
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1036 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1037 bool isProtected) |
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1038 { |
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1039 boost::mutex::scoped_lock lock(mutex_); |
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1040 |
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1041 // Lookup for the requested resource |
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1042 int64_t id; |
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1043 ResourceType type; |
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1044 if (!db_->LookupResource(publicId, id, type) || |
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1045 type != ResourceType_Patient) |
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1046 { |
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1047 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1048 } |
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1049 |
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1050 // No need for a SQLite::Transaction here, as we only make 1 write to the DB |
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1051 db_->SetProtectedPatient(id, isProtected); |
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1052 |
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1053 if (isProtected) |
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1054 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1055 else |
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1056 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1057 } |
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1058 |
| 304 | 1059 |
| 1060 void ServerIndex::GetChildInstances(std::list<std::string>& result, | |
| 1061 const std::string& publicId) | |
| 1062 { | |
| 1063 result.clear(); | |
| 1064 | |
| 1065 boost::mutex::scoped_lock lock(mutex_); | |
| 1066 | |
| 1067 ResourceType type; | |
| 1068 int64_t top; | |
| 1069 if (!db_->LookupResource(publicId, top, type)) | |
| 1070 { | |
| 1071 throw OrthancException(ErrorCode_UnknownResource); | |
| 1072 } | |
| 1073 | |
| 1074 if (type == ResourceType_Instance) | |
| 1075 { | |
| 1076 // The resource is already an instance: Do not go down the hierarchy | |
| 1077 result.push_back(publicId); | |
| 1078 return; | |
| 1079 } | |
| 1080 | |
| 1081 std::stack<int64_t> toExplore; | |
| 1082 toExplore.push(top); | |
| 1083 | |
| 1084 std::list<int64_t> tmp; | |
| 1085 | |
| 1086 while (!toExplore.empty()) | |
| 1087 { | |
| 1088 // Get the internal ID of the current resource | |
| 1089 int64_t resource = toExplore.top(); | |
| 1090 toExplore.pop(); | |
| 1091 | |
| 1092 if (db_->GetResourceType(resource) == ResourceType_Instance) | |
| 1093 { | |
| 1094 result.push_back(db_->GetPublicId(resource)); | |
| 1095 } | |
| 1096 else | |
| 1097 { | |
| 1098 // Tag all the children of this resource as to be explored | |
| 1099 db_->GetChildrenInternalId(tmp, resource); | |
| 1100 for (std::list<int64_t>::const_iterator | |
| 1101 it = tmp.begin(); it != tmp.end(); it++) | |
| 1102 { | |
| 1103 toExplore.push(*it); | |
| 1104 } | |
| 1105 } | |
| 1106 } | |
| 1107 } | |
| 1108 | |
|
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1109 |
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1110 void ServerIndex::SetMetadata(const std::string& publicId, |
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1111 MetadataType type, |
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1112 const std::string& value) |
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1113 { |
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1114 boost::mutex::scoped_lock lock(mutex_); |
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1115 |
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1116 ResourceType rtype; |
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1117 int64_t id; |
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1118 if (!db_->LookupResource(publicId, id, rtype)) |
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1119 { |
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1120 throw OrthancException(ErrorCode_UnknownResource); |
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1121 } |
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1122 |
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1123 db_->SetMetadata(id, type, value); |
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1124 } |
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1125 |
| 438 | 1126 |
| 1127 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1128 MetadataType type) | |
| 1129 { | |
| 1130 boost::mutex::scoped_lock lock(mutex_); | |
| 1131 | |
| 1132 ResourceType rtype; | |
| 1133 int64_t id; | |
| 1134 if (!db_->LookupResource(publicId, id, rtype)) | |
| 1135 { | |
| 1136 throw OrthancException(ErrorCode_UnknownResource); | |
| 1137 } | |
| 1138 | |
| 1139 db_->DeleteMetadata(id, type); | |
| 1140 } | |
| 1141 | |
| 1142 | |
|
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1143 bool ServerIndex::LookupMetadata(std::string& target, |
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1144 const std::string& publicId, |
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1145 MetadataType type) |
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1146 { |
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1147 boost::mutex::scoped_lock lock(mutex_); |
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1148 |
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1149 ResourceType rtype; |
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1150 int64_t id; |
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1151 if (!db_->LookupResource(publicId, id, rtype)) |
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1152 { |
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1153 throw OrthancException(ErrorCode_UnknownResource); |
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1154 } |
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1155 |
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1156 return db_->LookupMetadata(target, id, type); |
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1157 } |
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1158 |
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1159 |
|
436
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1160 bool ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
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1161 const std::string& publicId) |
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1162 { |
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1163 boost::mutex::scoped_lock lock(mutex_); |
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1164 |
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1165 ResourceType rtype; |
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1166 int64_t id; |
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1167 if (!db_->LookupResource(publicId, id, rtype)) |
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1168 { |
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1169 throw OrthancException(ErrorCode_UnknownResource); |
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1170 } |
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1171 |
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1172 return db_->ListAvailableMetadata(target, id); |
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1173 } |
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1174 |
|
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1175 |
|
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1176 bool ServerIndex::LookupParent(std::string& target, |
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1177 const std::string& publicId) |
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1178 { |
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1179 boost::mutex::scoped_lock lock(mutex_); |
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1180 |
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1181 ResourceType type; |
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1182 int64_t id; |
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1183 if (!db_->LookupResource(publicId, id, type)) |
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1184 { |
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1185 throw OrthancException(ErrorCode_UnknownResource); |
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1186 } |
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1187 |
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1188 int64_t parentId; |
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1189 if (db_->LookupParent(parentId, id)) |
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1190 { |
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1191 target = db_->GetPublicId(parentId); |
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1192 return true; |
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1193 } |
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1194 else |
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1195 { |
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1196 return false; |
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1197 } |
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1198 } |
| 310 | 1199 |
| 1200 | |
| 1201 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1202 { | |
| 1203 boost::mutex::scoped_lock lock(mutex_); | |
| 311 | 1204 |
| 1205 std::auto_ptr<SQLite::Transaction> transaction(db_->StartTransaction()); | |
| 1206 | |
| 1207 transaction->Begin(); | |
| 1208 uint64_t seq = db_->IncrementGlobalSequence(sequence); | |
| 1209 transaction->Commit(); | |
| 1210 | |
| 1211 return seq; | |
| 310 | 1212 } |
| 315 | 1213 |
| 1214 | |
| 1215 | |
| 1216 void ServerIndex::LogChange(ChangeType changeType, | |
| 1217 const std::string& publicId) | |
| 1218 { | |
| 1219 boost::mutex::scoped_lock lock(mutex_); | |
| 1220 std::auto_ptr<SQLite::Transaction> transaction(db_->StartTransaction()); | |
| 1221 transaction->Begin(); | |
| 1222 | |
| 1223 int64_t id; | |
| 1224 ResourceType type; | |
| 1225 if (!db_->LookupResource(publicId, id, type)) | |
| 1226 { | |
| 1227 throw OrthancException(ErrorCode_UnknownResource); | |
| 1228 } | |
| 1229 | |
| 1230 db_->LogChange(changeType, id, type); | |
| 1231 | |
| 1232 transaction->Commit(); | |
| 1233 } | |
|
413
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1234 |
|
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|
1235 |
|
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1236 void ServerIndex::DeleteChanges() |
|
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|
1237 { |
|
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|
1238 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1239 db_->ClearTable("Changes"); |
|
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1240 } |
|
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|
1241 |
|
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|
1242 void ServerIndex::DeleteExportedResources() |
|
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|
1243 { |
|
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|
1244 boost::mutex::scoped_lock lock(mutex_); |
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|
1245 db_->ClearTable("ExportedResources"); |
|
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|
1246 } |
|
440
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|
1247 |
|
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1248 |
|
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|
1249 void ServerIndex::GetStatistics(Json::Value& target, |
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1250 const std::string& publicId) |
|
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1251 { |
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|
1252 boost::mutex::scoped_lock lock(mutex_); |
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|
1253 |
|
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|
1254 ResourceType type; |
|
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|
1255 int64_t top; |
|
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|
1256 if (!db_->LookupResource(publicId, top, type)) |
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1257 { |
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|
1258 throw OrthancException(ErrorCode_UnknownResource); |
|
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1259 } |
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|
1260 |
|
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|
1261 std::stack<int64_t> toExplore; |
|
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|
1262 toExplore.push(top); |
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1263 |
|
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|
1264 int countInstances = 0; |
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1265 int countSeries = 0; |
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1266 int countStudies = 0; |
|
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1267 uint64_t compressedSize = 0; |
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1268 uint64_t uncompressedSize = 0; |
|
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1269 |
|
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|
1270 while (!toExplore.empty()) |
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|
1271 { |
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|
1272 // Get the internal ID of the current resource |
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1273 int64_t resource = toExplore.top(); |
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|
1274 toExplore.pop(); |
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|
1275 |
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|
1276 ResourceType thisType = db_->GetResourceType(resource); |
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|
1277 |
|
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|
1278 if (thisType == ResourceType_Instance) |
|
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|
1279 { |
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|
1280 std::list<FileContentType> f; |
|
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|
1281 db_->ListAvailableAttachments(f, resource); |
|
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|
1282 |
|
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|
1283 for (std::list<FileContentType>::const_iterator |
|
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|
1284 it = f.begin(); it != f.end(); it++) |
|
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|
1285 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1286 FileInfo attachment; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1287 if (db_->LookupAttachment(attachment, resource, *it)) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1288 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1289 compressedSize += attachment.GetCompressedSize(); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1290 uncompressedSize += attachment.GetUncompressedSize(); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1291 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1292 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1293 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1294 countInstances++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1295 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1296 else |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1297 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1298 switch (thisType) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1299 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1300 case ResourceType_Study: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1301 countStudies++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1302 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1303 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1304 case ResourceType_Series: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1305 countSeries++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1306 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1307 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1308 default: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1309 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1310 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1311 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1312 // Tag all the children of this resource as to be explored |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1313 std::list<int64_t> tmp; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1314 db_->GetChildrenInternalId(tmp, resource); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1315 for (std::list<int64_t>::const_iterator |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1316 it = tmp.begin(); it != tmp.end(); it++) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1317 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1318 toExplore.push(*it); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1319 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1320 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1321 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1322 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1323 target = Json::objectValue; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1324 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1325 target["DiskSizeMB"] = boost::lexical_cast<unsigned int>(compressedSize / MEGA_BYTES); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1326 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1327 target["UncompressedSizeMB"] = boost::lexical_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1328 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1329 switch (type) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1330 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1331 // Do NOT add "break" below this point! |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1332 case ResourceType_Patient: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1333 target["CountStudies"] = countStudies; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1334 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1335 case ResourceType_Study: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1336 target["CountSeries"] = countSeries; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1337 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1338 case ResourceType_Series: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1339 target["CountInstances"] = countInstances; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1340 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1341 case ResourceType_Instance: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1342 default: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1343 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1344 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1345 } |
| 0 | 1346 } |