Mercurial > hg > orthanc
annotate OrthancServer/Search/Compatibility/DatabaseLookup.cpp @ 3083:683d572424b6 db-changes
IDatabaseWrapper::SetResourcesContent
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 04 Jan 2019 15:52:19 +0100 |
parents | ead8576a02ef |
children | 195ba4cbac3f |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../../PrecompiledHeadersServer.h" |
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35 #include "DatabaseLookup.h" |
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36 |
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37 #include "../../../Core/OrthancException.h" |
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38 #include "../../ServerToolbox.h" |
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39 #include "SetOfResources.h" |
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40 |
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41 namespace Orthanc |
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42 { |
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43 namespace Compatibility |
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44 { |
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45 namespace |
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46 { |
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47 // Anonymous namespace to avoid clashes between compiler modules |
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48 class MainTagsConstraints : boost::noncopyable |
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49 { |
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50 private: |
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51 std::vector<DicomTagConstraint*> constraints_; |
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52 |
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53 public: |
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54 ~MainTagsConstraints() |
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55 { |
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56 for (size_t i = 0; i < constraints_.size(); i++) |
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57 { |
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58 assert(constraints_[i] != NULL); |
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59 delete constraints_[i]; |
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60 } |
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61 } |
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62 |
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63 void Reserve(size_t n) |
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64 { |
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65 constraints_.reserve(n); |
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66 } |
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67 |
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68 size_t GetSize() const |
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69 { |
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70 return constraints_.size(); |
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71 } |
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72 |
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73 DicomTagConstraint& GetConstraint(size_t i) const |
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74 { |
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75 if (i >= constraints_.size()) |
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76 { |
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77 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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78 } |
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79 else |
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80 { |
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81 assert(constraints_[i] != NULL); |
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82 return *constraints_[i]; |
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83 } |
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84 } |
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85 |
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86 void Add(const DatabaseConstraint& constraint) |
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87 { |
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88 constraints_.push_back(new DicomTagConstraint(constraint)); |
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89 } |
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90 }; |
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91 } |
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92 |
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93 |
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94 static void ApplyIdentifierConstraint(SetOfResources& candidates, |
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95 CompatibilityDatabaseWrapper& database, |
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96 const DatabaseConstraint& constraint, |
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97 ResourceType level) |
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98 { |
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99 std::list<int64_t> matches; |
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100 |
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101 switch (constraint.GetConstraintType()) |
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102 { |
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103 case ConstraintType_Equal: |
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104 database.LookupIdentifier(matches, level, constraint.GetTag(), |
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105 IdentifierConstraintType_Equal, constraint.GetSingleValue()); |
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106 break; |
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107 |
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108 case ConstraintType_SmallerOrEqual: |
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109 database.LookupIdentifier(matches, level, constraint.GetTag(), |
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110 IdentifierConstraintType_SmallerOrEqual, constraint.GetSingleValue()); |
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111 break; |
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112 |
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113 case ConstraintType_GreaterOrEqual: |
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114 database.LookupIdentifier(matches, level, constraint.GetTag(), |
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115 IdentifierConstraintType_GreaterOrEqual, constraint.GetSingleValue()); |
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116 |
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117 break; |
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118 |
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119 case ConstraintType_Wildcard: |
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120 database.LookupIdentifier(matches, level, constraint.GetTag(), |
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121 IdentifierConstraintType_Wildcard, constraint.GetSingleValue()); |
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122 |
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123 break; |
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124 |
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125 case ConstraintType_List: |
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126 for (size_t i = 0; i < constraint.GetValuesCount(); i++) |
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127 { |
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128 std::list<int64_t> tmp; |
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129 database.LookupIdentifier(tmp, level, constraint.GetTag(), |
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130 IdentifierConstraintType_Wildcard, constraint.GetValue(i)); |
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131 matches.splice(matches.end(), tmp); |
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132 } |
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133 |
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134 break; |
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135 |
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136 default: |
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137 throw OrthancException(ErrorCode_InternalError); |
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138 } |
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139 |
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140 candidates.Intersect(matches); |
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141 } |
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142 |
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143 |
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144 static void ApplyIdentifierRange(SetOfResources& candidates, |
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145 CompatibilityDatabaseWrapper& database, |
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146 const DatabaseConstraint& smaller, |
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147 const DatabaseConstraint& greater, |
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148 ResourceType level) |
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149 { |
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150 assert(smaller.GetConstraintType() == ConstraintType_SmallerOrEqual && |
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151 greater.GetConstraintType() == ConstraintType_GreaterOrEqual && |
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152 smaller.GetTag() == greater.GetTag() && |
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153 ServerToolbox::IsIdentifier(smaller.GetTag(), level)); |
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154 |
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155 std::list<int64_t> matches; |
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156 database.LookupIdentifierRange(matches, level, smaller.GetTag(), |
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157 greater.GetSingleValue(), smaller.GetSingleValue()); |
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158 candidates.Intersect(matches); |
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159 } |
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160 |
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161 |
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162 static void ApplyLevel(SetOfResources& candidates, |
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163 CompatibilityDatabaseWrapper& database, |
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164 const std::vector<DatabaseConstraint>& lookup, |
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165 ResourceType level) |
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166 { |
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167 typedef std::set<const DatabaseConstraint*> SetOfConstraints; |
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168 typedef std::map<DicomTag, SetOfConstraints> Identifiers; |
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169 |
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170 // (1) Select which constraints apply to this level, and split |
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171 // them between "identifier tags" constraints and "main DICOM |
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172 // tags" constraints |
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173 |
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174 Identifiers identifiers; |
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175 SetOfConstraints mainTags; |
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176 |
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177 for (size_t i = 0; i < lookup.size(); i++) |
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178 { |
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179 if (lookup[i].GetLevel() == level) |
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180 { |
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181 if (lookup[i].IsIdentifier()) |
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182 { |
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183 identifiers[lookup[i].GetTag()].insert(&lookup[i]); |
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184 } |
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185 else |
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186 { |
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187 mainTags.insert(&lookup[i]); |
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188 } |
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189 } |
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190 } |
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191 |
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192 |
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193 // (2) Apply the constraints over the identifiers |
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194 |
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195 for (Identifiers::const_iterator it = identifiers.begin(); |
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196 it != identifiers.end(); ++it) |
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197 { |
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198 // Check whether some range constraint over identifiers is |
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199 // present at this level |
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200 const DatabaseConstraint* smaller = NULL; |
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201 const DatabaseConstraint* greater = NULL; |
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202 |
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203 for (SetOfConstraints::const_iterator it2 = it->second.begin(); |
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204 it2 != it->second.end(); ++it2) |
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205 { |
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206 assert(*it2 != NULL); |
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207 |
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208 if ((*it2)->GetConstraintType() == ConstraintType_SmallerOrEqual) |
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209 { |
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210 smaller = *it2; |
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211 } |
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212 |
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213 if ((*it2)->GetConstraintType() == ConstraintType_GreaterOrEqual) |
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214 { |
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215 greater = *it2; |
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216 } |
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217 } |
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218 |
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219 if (smaller != NULL && |
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220 greater != NULL) |
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221 { |
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222 // There is a range constraint: Apply it, as it is more efficient |
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223 ApplyIdentifierRange(candidates, database, *smaller, *greater, level); |
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224 } |
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225 else |
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226 { |
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227 smaller = NULL; |
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228 greater = NULL; |
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229 } |
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230 |
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231 for (SetOfConstraints::const_iterator it2 = it->second.begin(); |
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232 it2 != it->second.end(); ++it2) |
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233 { |
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234 // Check to avoid applying twice the range constraint |
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235 if (*it2 != smaller && |
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236 *it2 != greater) |
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237 { |
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238 ApplyIdentifierConstraint(candidates, database, **it2, level); |
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239 } |
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240 } |
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241 } |
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242 |
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243 |
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244 // (3) Apply the constraints over the main DICOM tags (no index |
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245 // here, so this is less efficient than filtering over the |
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246 // identifiers) |
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247 if (!mainTags.empty()) |
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248 { |
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249 MainTagsConstraints c; |
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250 c.Reserve(mainTags.size()); |
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251 |
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252 for (SetOfConstraints::const_iterator it = mainTags.begin(); |
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253 it != mainTags.end(); ++it) |
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254 { |
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255 assert(*it != NULL); |
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256 c.Add(**it); |
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257 } |
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258 |
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259 std::list<int64_t> source; |
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260 candidates.Flatten(source); |
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261 candidates.Clear(); |
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262 |
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263 std::list<int64_t> filtered; |
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264 for (std::list<int64_t>::const_iterator candidate = source.begin(); |
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265 candidate != source.end(); ++candidate) |
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266 { |
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267 DicomMap tags; |
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268 database.GetMainDicomTags(tags, *candidate); |
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269 |
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270 bool match = true; |
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271 |
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272 for (size_t i = 0; i < c.GetSize(); i++) |
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273 { |
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274 if (!c.GetConstraint(i).IsMatch(tags)) |
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275 { |
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276 match = false; |
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277 break; |
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278 } |
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279 } |
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280 |
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281 if (match) |
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282 { |
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283 filtered.push_back(*candidate); |
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284 } |
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285 } |
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286 |
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287 candidates.Intersect(filtered); |
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288 } |
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289 } |
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290 |
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291 |
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292 static std::string GetOneInstance(IDatabaseWrapper& database, |
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293 int64_t resource, |
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294 ResourceType level) |
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295 { |
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296 for (int i = level; i < ResourceType_Instance; i++) |
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297 { |
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298 assert(database.GetResourceType(resource) == static_cast<ResourceType>(i)); |
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299 |
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300 std::list<int64_t> children; |
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301 database.GetChildrenInternalId(children, resource); |
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302 |
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303 if (children.empty()) |
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304 { |
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305 throw OrthancException(ErrorCode_Database); |
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306 } |
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307 |
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308 resource = children.front(); |
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309 } |
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310 |
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311 return database.GetPublicId(resource); |
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312 } |
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313 |
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314 |
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315 void DatabaseLookup::ApplyLookupResources(std::list<std::string>& resourcesId, |
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316 std::list<std::string>* instancesId, |
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317 const std::vector<DatabaseConstraint>& lookup, |
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318 ResourceType queryLevel, |
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319 size_t limit) |
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320 { |
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321 // This is a re-implementation of |
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322 // "../../../Resources/Graveyard/DatabaseOptimizations/LookupResource.cpp" |
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323 |
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324 assert(ResourceType_Patient < ResourceType_Study && |
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325 ResourceType_Study < ResourceType_Series && |
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326 ResourceType_Series < ResourceType_Instance); |
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327 |
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328 ResourceType upperLevel = queryLevel; |
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329 ResourceType lowerLevel = queryLevel; |
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330 |
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331 for (size_t i = 0; i < lookup.size(); i++) |
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332 { |
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333 ResourceType level = lookup[i].GetLevel(); |
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334 |
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335 if (level < upperLevel) |
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336 { |
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337 upperLevel = level; |
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338 } |
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339 |
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340 if (level > lowerLevel) |
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341 { |
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342 lowerLevel = level; |
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343 } |
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344 } |
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345 |
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346 assert(upperLevel <= queryLevel && |
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347 queryLevel <= lowerLevel); |
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348 |
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349 SetOfResources candidates(database_, upperLevel); |
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350 |
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351 for (int level = upperLevel; level <= lowerLevel; level++) |
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352 { |
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353 ApplyLevel(candidates, database_, lookup, static_cast<ResourceType>(level)); |
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354 |
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355 if (level != lowerLevel) |
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356 { |
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357 candidates.GoDown(); |
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358 } |
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359 } |
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360 |
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361 std::list<int64_t> resources; |
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362 candidates.Flatten(resources); |
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363 |
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364 // Climb up, up to queryLevel |
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365 |
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366 for (int level = lowerLevel; level > queryLevel; level--) |
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367 { |
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368 std::list<int64_t> parents; |
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369 for (std::list<int64_t>::const_iterator |
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370 it = resources.begin(); it != resources.end(); ++it) |
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371 { |
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372 int64_t parent; |
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373 if (database_.LookupParent(parent, *it)) |
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374 { |
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375 parents.push_back(parent); |
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376 } |
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377 } |
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378 |
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379 resources.swap(parents); |
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380 } |
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381 |
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382 // Apply the limit, if given |
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383 |
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384 if (limit != 0 && |
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385 resources.size() > limit) |
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386 { |
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387 resources.resize(limit); |
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388 } |
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389 |
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390 // Get the public ID of all the selected resources |
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391 |
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392 size_t pos = 0; |
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393 |
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394 for (std::list<int64_t>::const_iterator |
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395 it = resources.begin(); it != resources.end(); ++it, pos++) |
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396 { |
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397 assert(database_.GetResourceType(*it) == queryLevel); |
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398 |
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399 const std::string resource = database_.GetPublicId(*it); |
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400 resourcesId.push_back(resource); |
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401 |
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402 if (instancesId != NULL) |
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403 { |
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404 if (queryLevel == ResourceType_Instance) |
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405 { |
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406 // The resource is itself the instance |
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407 instancesId->push_back(resource); |
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408 } |
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409 else |
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410 { |
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411 // Collect one child instance for each of the selected resources |
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412 instancesId->push_back(GetOneInstance(database_, *it, queryLevel)); |
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413 } |
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414 } |
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415 } |
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416 } |
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417 } |
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418 } |