Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 1070:67a6031f09ae
notes
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 28 Jul 2014 12:40:12 +0200 |
parents | 160dfe770618 |
children | 009dce4ea2f6 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege, |
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4 * Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "../PrecompiledHeadersServer.h" |
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34 #include "OrthancRestApi.h" |
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35 |
795 | 36 #include "../FromDcmtkBridge.h" |
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37 |
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38 #include <glog/logging.h> |
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39 |
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40 namespace Orthanc |
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41 { |
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42 // Modification of DICOM instances ------------------------------------------ |
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43 |
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44 enum TagOperation |
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45 { |
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46 TagOperation_Keep, |
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47 TagOperation_Remove |
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48 }; |
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49 |
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50 static void ParseListOfTags(DicomModification& target, |
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51 const Json::Value& query, |
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52 TagOperation operation) |
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53 { |
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54 if (!query.isArray()) |
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55 { |
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56 throw OrthancException(ErrorCode_BadRequest); |
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57 } |
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58 |
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59 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
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60 { |
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61 std::string name = query[i].asString(); |
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62 |
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63 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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64 |
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65 switch (operation) |
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66 { |
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67 case TagOperation_Keep: |
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68 target.Keep(tag); |
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69 VLOG(1) << "Keep: " << name << " " << tag << std::endl; |
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70 break; |
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71 |
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72 case TagOperation_Remove: |
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73 target.Remove(tag); |
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74 VLOG(1) << "Remove: " << name << " " << tag << std::endl; |
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75 break; |
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76 |
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77 default: |
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78 throw OrthancException(ErrorCode_InternalError); |
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79 } |
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80 } |
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81 } |
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82 |
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83 |
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84 static void ParseReplacements(DicomModification& target, |
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85 const Json::Value& replacements) |
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86 { |
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87 if (!replacements.isObject()) |
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88 { |
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89 throw OrthancException(ErrorCode_BadRequest); |
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90 } |
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91 |
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92 Json::Value::Members members = replacements.getMemberNames(); |
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93 for (size_t i = 0; i < members.size(); i++) |
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94 { |
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95 const std::string& name = members[i]; |
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96 std::string value = replacements[name].asString(); |
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97 |
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98 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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99 target.Replace(tag, value); |
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100 |
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101 VLOG(1) << "Replace: " << name << " " << tag << " == " << value << std::endl; |
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102 } |
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103 } |
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104 |
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105 |
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106 static std::string GeneratePatientName(ServerContext& context) |
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107 { |
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108 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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109 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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110 } |
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111 |
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112 |
1010 | 113 |
114 bool OrthancRestApi::ParseModifyRequest(DicomModification& target, | |
115 const Json::Value& request) | |
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116 { |
1010 | 117 if (request.isObject()) |
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118 { |
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119 if (request.isMember("RemovePrivateTags")) |
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120 { |
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121 target.SetRemovePrivateTags(true); |
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122 } |
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123 |
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124 if (request.isMember("Remove")) |
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125 { |
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126 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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127 } |
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128 |
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129 if (request.isMember("Replace")) |
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130 { |
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131 ParseReplacements(target, request["Replace"]); |
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132 } |
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133 |
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134 return true; |
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135 } |
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136 else |
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137 { |
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138 return false; |
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139 } |
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140 } |
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141 |
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142 |
1010 | 143 static bool ParseModifyRequest(DicomModification& target, |
144 const RestApiPostCall& call) | |
145 { | |
146 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"}}' | |
147 | |
148 Json::Value request; | |
149 if (call.ParseJsonRequest(request)) | |
150 { | |
151 return OrthancRestApi::ParseModifyRequest(target, request); | |
152 } | |
153 else | |
154 { | |
155 return false; | |
156 } | |
157 } | |
158 | |
159 | |
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160 static bool ParseAnonymizationRequest(DicomModification& target, |
974 | 161 RestApiPostCall& call) |
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162 { |
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163 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": null,"Remove":["Modality"]}' > Anonymized.dcm |
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164 |
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165 target.SetupAnonymization(); |
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166 std::string patientName = target.GetReplacement(DICOM_TAG_PATIENT_NAME); |
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167 |
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168 Json::Value request; |
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169 if (call.ParseJsonRequest(request) && request.isObject()) |
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170 { |
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171 if (request.isMember("KeepPrivateTags")) |
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172 { |
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173 target.SetRemovePrivateTags(false); |
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174 } |
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175 |
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176 if (request.isMember("Remove")) |
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177 { |
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178 ParseListOfTags(target, request["Remove"], TagOperation_Remove); |
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179 } |
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180 |
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181 if (request.isMember("Replace")) |
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182 { |
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183 ParseReplacements(target, request["Replace"]); |
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184 } |
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185 |
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186 if (request.isMember("Keep")) |
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187 { |
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188 ParseListOfTags(target, request["Keep"], TagOperation_Keep); |
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189 } |
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190 |
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191 if (target.IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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192 target.GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName) |
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193 { |
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194 // Overwrite the random Patient's Name by one that is more |
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195 // user-friendly (provided none was specified by the user) |
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196 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call))); |
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197 } |
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198 |
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199 return true; |
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200 } |
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201 else |
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202 { |
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203 return false; |
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204 } |
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205 } |
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206 |
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207 |
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208 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 209 RestApiPostCall& call) |
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210 { |
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211 std::string id = call.GetUriComponent("id", ""); |
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212 |
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213 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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214 |
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215 std::auto_ptr<ParsedDicomFile> modified(locker.GetDicom().Clone()); |
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216 modification.Apply(*modified); |
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217 modified->Answer(call.GetOutput()); |
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218 } |
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219 |
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220 |
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221 static void AnonymizeOrModifyResource(DicomModification& modification, |
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222 MetadataType metadataType, |
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223 ChangeType changeType, |
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224 ResourceType resourceType, |
974 | 225 RestApiPostCall& call) |
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226 { |
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227 bool isFirst = true; |
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228 Json::Value result(Json::objectValue); |
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229 |
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230 ServerContext& context = OrthancRestApi::GetContext(call); |
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231 |
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232 typedef std::list<std::string> Instances; |
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233 Instances instances; |
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234 std::string id = call.GetUriComponent("id", ""); |
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235 context.GetIndex().GetChildInstances(instances, id); |
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236 |
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237 if (instances.empty()) |
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238 { |
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239 return; |
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240 } |
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241 |
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242 |
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243 /** |
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244 * Loop over all the instances of the resource. |
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245 **/ |
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246 |
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247 for (Instances::const_iterator it = instances.begin(); |
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248 it != instances.end(); ++it) |
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249 { |
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250 LOG(INFO) << "Modifying instance " << *it; |
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251 |
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252 std::auto_ptr<ServerContext::DicomCacheLocker> locker; |
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253 |
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254 try |
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255 { |
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256 locker.reset(new ServerContext::DicomCacheLocker(OrthancRestApi::GetContext(call), *it)); |
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257 } |
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258 catch (OrthancException&) |
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259 { |
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260 // This child instance has been removed in between |
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261 continue; |
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262 } |
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263 |
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264 ParsedDicomFile& original = locker->GetDicom(); |
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265 DicomInstanceHasher originalHasher = original.GetHasher(); |
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266 |
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267 |
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268 /** |
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269 * Compute the resulting DICOM instance. |
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270 **/ |
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271 |
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272 std::auto_ptr<ParsedDicomFile> modified(original.Clone()); |
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273 modification.Apply(*modified); |
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274 |
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275 DicomInstanceToStore toStore; |
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276 toStore.SetParsedDicomFile(*modified); |
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277 |
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278 |
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279 /** |
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280 * Prepare the metadata information to associate with the |
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281 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom). |
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282 **/ |
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283 |
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284 DicomInstanceHasher modifiedHasher = modified->GetHasher(); |
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285 |
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286 if (originalHasher.HashSeries() != modifiedHasher.HashSeries()) |
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287 { |
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288 toStore.AddMetadata(ResourceType_Series, metadataType, originalHasher.HashSeries()); |
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289 } |
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290 |
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291 if (originalHasher.HashStudy() != modifiedHasher.HashStudy()) |
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292 { |
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293 toStore.AddMetadata(ResourceType_Study, metadataType, originalHasher.HashStudy()); |
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294 } |
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295 |
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296 if (originalHasher.HashPatient() != modifiedHasher.HashPatient()) |
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297 { |
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298 toStore.AddMetadata(ResourceType_Patient, metadataType, originalHasher.HashPatient()); |
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299 } |
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300 |
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301 assert(*it == originalHasher.HashInstance()); |
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302 toStore.AddMetadata(ResourceType_Instance, metadataType, *it); |
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303 |
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304 |
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305 /** |
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306 * Store the resulting DICOM instance into the Orthanc store. |
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307 **/ |
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308 |
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309 std::string modifiedInstance; |
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310 if (context.Store(modifiedInstance, toStore) != StoreStatus_Success) |
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311 { |
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312 LOG(ERROR) << "Error while storing a modified instance " << *it; |
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313 return; |
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314 } |
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315 |
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316 // Sanity checks in debug mode |
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317 assert(modifiedInstance == modifiedHasher.HashInstance()); |
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318 |
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319 |
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320 /** |
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321 * Compute the JSON object that is returned by the REST call. |
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322 **/ |
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323 |
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324 if (isFirst) |
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325 { |
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326 std::string newId; |
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327 |
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328 switch (resourceType) |
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329 { |
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330 case ResourceType_Series: |
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331 newId = modifiedHasher.HashSeries(); |
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332 break; |
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333 |
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334 case ResourceType_Study: |
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335 newId = modifiedHasher.HashStudy(); |
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336 break; |
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337 |
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338 case ResourceType_Patient: |
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339 newId = modifiedHasher.HashPatient(); |
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340 break; |
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341 |
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342 default: |
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343 throw OrthancException(ErrorCode_InternalError); |
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344 } |
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345 |
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346 result["Type"] = EnumerationToString(resourceType); |
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347 result["ID"] = newId; |
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348 result["Path"] = GetBasePath(resourceType, newId); |
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349 result["PatientID"] = modifiedHasher.HashPatient(); |
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350 isFirst = false; |
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351 } |
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352 } |
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353 |
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354 call.GetOutput().AnswerJson(result); |
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355 } |
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356 |
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357 |
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358 |
974 | 359 static void ModifyInstance(RestApiPostCall& call) |
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360 { |
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361 DicomModification modification; |
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362 |
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363 if (ParseModifyRequest(modification, call)) |
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364 { |
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365 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) |
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366 { |
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367 modification.SetLevel(ResourceType_Patient); |
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368 } |
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369 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
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370 { |
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371 modification.SetLevel(ResourceType_Study); |
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372 } |
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373 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
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374 { |
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375 modification.SetLevel(ResourceType_Series); |
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376 } |
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377 else |
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378 { |
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379 modification.SetLevel(ResourceType_Instance); |
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380 } |
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381 |
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382 AnonymizeOrModifyInstance(modification, call); |
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383 } |
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384 } |
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385 |
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386 |
974 | 387 static void AnonymizeInstance(RestApiPostCall& call) |
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388 { |
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389 DicomModification modification; |
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390 |
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391 if (ParseAnonymizationRequest(modification, call)) |
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392 { |
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393 AnonymizeOrModifyInstance(modification, call); |
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394 } |
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395 } |
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396 |
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397 |
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398 template <enum ChangeType changeType, |
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399 enum ResourceType resourceType> |
974 | 400 static void ModifyResource(RestApiPostCall& call) |
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401 { |
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402 DicomModification modification; |
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403 |
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404 if (ParseModifyRequest(modification, call)) |
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405 { |
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406 modification.SetLevel(resourceType); |
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407 AnonymizeOrModifyResource(modification, MetadataType_ModifiedFrom, |
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408 changeType, resourceType, call); |
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409 } |
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410 } |
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411 |
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412 |
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413 template <enum ChangeType changeType, |
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414 enum ResourceType resourceType> |
974 | 415 static void AnonymizeResource(RestApiPostCall& call) |
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416 { |
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417 DicomModification modification; |
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418 |
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419 if (ParseAnonymizationRequest(modification, call)) |
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420 { |
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421 AnonymizeOrModifyResource(modification, MetadataType_AnonymizedFrom, |
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422 changeType, resourceType, call); |
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423 } |
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424 } |
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425 |
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426 |
974 | 427 static void Create(RestApiPostCall& call) |
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428 { |
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429 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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430 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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431 |
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432 Json::Value request; |
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433 if (call.ParseJsonRequest(request) && request.isObject()) |
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434 { |
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435 DicomModification modification; |
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436 ParseReplacements(modification, request); |
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437 |
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438 ParsedDicomFile dicom; |
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439 |
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440 if (modification.IsReplaced(DICOM_TAG_PIXEL_DATA)) |
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441 { |
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442 dicom.EmbedImage(modification.GetReplacement(DICOM_TAG_PIXEL_DATA)); |
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443 modification.Keep(DICOM_TAG_PIXEL_DATA); |
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444 } |
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445 |
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446 modification.Apply(dicom); |
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447 |
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448 DicomInstanceToStore toStore; |
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449 toStore.SetParsedDicomFile(dicom); |
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450 |
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451 std::string id; |
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452 StoreStatus status = OrthancRestApi::GetContext(call).Store(id, toStore); |
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453 |
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454 if (status == StoreStatus_Failure) |
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455 { |
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456 LOG(ERROR) << "Error while storing a manually-created instance"; |
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457 return; |
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458 } |
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459 |
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460 OrthancRestApi::GetApi(call).AnswerStoredInstance(call, id, status); |
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461 } |
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462 } |
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463 |
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464 |
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465 void OrthancRestApi::RegisterAnonymizeModify() |
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466 { |
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467 Register("/instances/{id}/modify", ModifyInstance); |
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468 Register("/series/{id}/modify", ModifyResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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469 Register("/studies/{id}/modify", ModifyResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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470 Register("/patients/{id}/modify", ModifyResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
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|
471 |
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472 Register("/instances/{id}/anonymize", AnonymizeInstance); |
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473 Register("/series/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedSeries, ResourceType_Series>); |
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474 Register("/studies/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedStudy, ResourceType_Study>); |
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475 Register("/patients/{id}/anonymize", AnonymizeResource<ChangeType_ModifiedPatient, ResourceType_Patient>); |
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476 |
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477 Register("/tools/create-dicom", Create); |
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478 } |
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479 } |