Mercurial > hg > orthanc
annotate Core/DicomParsing/DcmtkTranscoder.cpp @ 3909:6762a97deabc transcoding
removed useless abstraction IDicomTranscoder::TranscodeToBuffer()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 08 May 2020 11:40:12 +0200 |
parents | 1555feda39e2 |
children | 1f71c2f20e16 |
rev | line source |
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3893 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
4 * Department, University Hospital of Liege, Belgium | |
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium | |
6 * | |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
34 #include "../PrecompiledHeaders.h" | |
35 #include "DcmtkTranscoder.h" | |
36 | |
37 | |
38 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG) | |
39 # error Macro ORTHANC_ENABLE_DCMTK_JPEG must be defined | |
40 #endif | |
41 | |
42 #if !defined(ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS) | |
43 # error Macro ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS must be defined | |
44 #endif | |
45 | |
46 | |
47 #include "FromDcmtkBridge.h" | |
48 #include "../OrthancException.h" | |
49 | |
50 #include <dcmtk/dcmdata/dcdeftag.h> | |
51 #include <dcmtk/dcmjpeg/djrploss.h> // for DJ_RPLossy | |
52 #include <dcmtk/dcmjpeg/djrplol.h> // for DJ_RPLossless | |
53 #include <dcmtk/dcmjpls/djrparam.h> // for DJLSRepresentationParameter | |
54 | |
55 | |
56 namespace Orthanc | |
57 { | |
58 static uint16_t GetBitsStored(DcmDataset& dataset) | |
59 { | |
60 uint16_t bitsStored; | |
61 if (dataset.findAndGetUint16(DCM_BitsStored, bitsStored).good()) | |
62 { | |
63 return bitsStored; | |
64 } | |
65 else | |
66 { | |
67 throw OrthancException(ErrorCode_BadFileFormat, | |
68 "Missing \"Bits Stored\" tag in DICOM instance"); | |
69 } | |
70 } | |
71 | |
72 | |
73 static std::string GetSopInstanceUid(DcmDataset& dataset) | |
74 { | |
75 const char* v = NULL; | |
76 | |
77 if (dataset.findAndGetString(DCM_SOPInstanceUID, v).good() && | |
78 v != NULL) | |
79 { | |
80 return std::string(v); | |
81 } | |
82 else | |
83 { | |
84 throw OrthancException(ErrorCode_BadFileFormat, "File without SOP instance UID"); | |
85 } | |
86 } | |
87 | |
88 | |
89 static void CheckSopInstanceUid(DcmFileFormat& dicom, | |
90 const std::string& sopInstanceUid, | |
91 bool mustEqual) | |
92 { | |
93 if (dicom.getDataset() == NULL) | |
94 { | |
95 throw OrthancException(ErrorCode_InternalError); | |
96 } | |
97 | |
98 bool ok; | |
99 | |
100 if (mustEqual) | |
101 { | |
102 ok = (GetSopInstanceUid(*dicom.getDataset()) == sopInstanceUid); | |
103 } | |
104 else | |
105 { | |
106 ok = (GetSopInstanceUid(*dicom.getDataset()) != sopInstanceUid); | |
107 } | |
108 | |
109 if (!ok) | |
110 { | |
111 throw OrthancException(ErrorCode_InternalError, | |
112 mustEqual ? "The SOP instance UID has changed unexpectedly during transcoding" : | |
113 "The SOP instance UID has not changed as expected during transcoding"); | |
114 } | |
115 } | |
116 | |
117 | |
118 void DcmtkTranscoder::SetLossyQuality(unsigned int quality) | |
119 { | |
120 if (quality <= 0 || | |
121 quality > 100) | |
122 { | |
123 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
124 } | |
125 else | |
126 { | |
127 lossyQuality_ = quality; | |
128 } | |
129 } | |
130 | |
131 | |
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132 bool DcmtkTranscoder::InplaceTranscode(bool& hasSopInstanceUidChanged /* out */, |
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133 DcmFileFormat& dicom, |
3893 | 134 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
135 bool allowNewSopInstanceUid) | |
136 { | |
137 if (dicom.getDataset() == NULL) | |
138 { | |
139 throw OrthancException(ErrorCode_InternalError); | |
140 } | |
141 | |
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142 hasSopInstanceUidChanged = false; |
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143 |
3893 | 144 DicomTransferSyntax syntax; |
145 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, dicom)) | |
146 { | |
147 throw OrthancException(ErrorCode_BadFileFormat, | |
148 "Cannot determine the transfer syntax"); | |
149 } | |
150 | |
151 const uint16_t bitsStored = GetBitsStored(*dicom.getDataset()); | |
152 std::string sourceSopInstanceUid = GetSopInstanceUid(*dicom.getDataset()); | |
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153 |
3893 | 154 if (allowedSyntaxes.find(syntax) != allowedSyntaxes.end()) |
155 { | |
156 // No transcoding is needed | |
157 return true; | |
158 } | |
159 | |
160 if (allowedSyntaxes.find(DicomTransferSyntax_LittleEndianImplicit) != allowedSyntaxes.end() && | |
161 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_LittleEndianImplicit, NULL)) | |
162 { | |
163 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
164 return true; | |
165 } | |
166 | |
167 if (allowedSyntaxes.find(DicomTransferSyntax_LittleEndianExplicit) != allowedSyntaxes.end() && | |
168 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_LittleEndianExplicit, NULL)) | |
169 { | |
170 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
171 return true; | |
172 } | |
173 | |
174 if (allowedSyntaxes.find(DicomTransferSyntax_BigEndianExplicit) != allowedSyntaxes.end() && | |
175 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_BigEndianExplicit, NULL)) | |
176 { | |
177 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
178 return true; | |
179 } | |
180 | |
181 if (allowedSyntaxes.find(DicomTransferSyntax_DeflatedLittleEndianExplicit) != allowedSyntaxes.end() && | |
182 FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL)) | |
183 { | |
184 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
185 return true; | |
186 } | |
187 | |
188 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 | |
189 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess1) != allowedSyntaxes.end() && | |
190 allowNewSopInstanceUid && | |
191 bitsStored == 8) | |
192 { | |
193 // Check out "dcmjpeg/apps/dcmcjpeg.cc" | |
194 DJ_RPLossy parameters(lossyQuality_); | |
195 | |
196 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess1, ¶meters)) | |
197 { | |
198 CheckSopInstanceUid(dicom, sourceSopInstanceUid, false); | |
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199 hasSopInstanceUidChanged = true; |
3893 | 200 return true; |
201 } | |
202 } | |
203 #endif | |
204 | |
205 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 | |
206 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess2_4) != allowedSyntaxes.end() && | |
207 allowNewSopInstanceUid && | |
208 bitsStored <= 12) | |
209 { | |
210 // Check out "dcmjpeg/apps/dcmcjpeg.cc" | |
211 DJ_RPLossy parameters(lossyQuality_); | |
212 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess2_4, ¶meters)) | |
213 { | |
214 CheckSopInstanceUid(dicom, sourceSopInstanceUid, false); | |
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215 hasSopInstanceUidChanged = true; |
3893 | 216 return true; |
217 } | |
218 } | |
219 #endif | |
220 | |
221 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 | |
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222 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14) != allowedSyntaxes.end()) |
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223 { |
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224 // Check out "dcmjpeg/apps/dcmcjpeg.cc" |
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225 DJ_RPLossless parameters(6 /* opt_selection_value */, |
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226 0 /* opt_point_transform */); |
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227 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14, ¶meters)) |
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228 { |
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229 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); |
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230 return true; |
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231 } |
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232 } |
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233 #endif |
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234 |
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235 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
3893 | 236 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGProcess14SV1) != allowedSyntaxes.end()) |
237 { | |
238 // Check out "dcmjpeg/apps/dcmcjpeg.cc" | |
239 DJ_RPLossless parameters(6 /* opt_selection_value */, | |
240 0 /* opt_point_transform */); | |
241 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGProcess14SV1, ¶meters)) | |
242 { | |
243 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
244 return true; | |
245 } | |
246 } | |
247 #endif | |
248 | |
249 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 | |
250 if (allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossless) != allowedSyntaxes.end()) | |
251 { | |
252 // Check out "dcmjpls/apps/dcmcjpls.cc" | |
253 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */, | |
254 OFTrue /* opt_useLosslessProcess */); | |
255 | |
256 /** | |
257 * WARNING: This call results in a segmentation fault if using | |
258 * the DCMTK package 3.6.2 from Ubuntu 18.04. | |
259 **/ | |
260 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossless, ¶meters)) | |
261 { | |
262 CheckSopInstanceUid(dicom, sourceSopInstanceUid, true); | |
263 return true; | |
264 } | |
265 } | |
266 #endif | |
267 | |
268 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 | |
269 if (allowNewSopInstanceUid && | |
270 allowedSyntaxes.find(DicomTransferSyntax_JPEGLSLossy) != allowedSyntaxes.end()) | |
271 { | |
272 // Check out "dcmjpls/apps/dcmcjpls.cc" | |
273 DJLSRepresentationParameter parameters(2 /* opt_nearlossless_deviation */, | |
274 OFFalse /* opt_useLosslessProcess */); | |
275 | |
276 /** | |
277 * WARNING: This call results in a segmentation fault if using | |
278 * the DCMTK package 3.6.2 from Ubuntu 18.04. | |
279 **/ | |
280 if (FromDcmtkBridge::Transcode(dicom, DicomTransferSyntax_JPEGLSLossy, ¶meters)) | |
281 { | |
282 CheckSopInstanceUid(dicom, sourceSopInstanceUid, false); | |
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283 hasSopInstanceUidChanged = true; |
3893 | 284 return true; |
285 } | |
286 } | |
287 #endif | |
288 | |
289 return false; | |
290 } | |
291 | |
292 | |
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293 bool DcmtkTranscoder::IsSupported(DicomTransferSyntax syntax) |
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294 { |
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295 if (syntax == DicomTransferSyntax_LittleEndianImplicit || |
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296 syntax == DicomTransferSyntax_LittleEndianExplicit || |
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297 syntax == DicomTransferSyntax_BigEndianExplicit || |
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298 syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit) |
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299 { |
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300 return true; |
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301 } |
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302 |
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303 #if ORTHANC_ENABLE_DCMTK_JPEG == 1 |
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304 if (syntax == DicomTransferSyntax_JPEGProcess1 || |
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305 syntax == DicomTransferSyntax_JPEGProcess2_4 || |
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306 syntax == DicomTransferSyntax_JPEGProcess14 || |
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307 syntax == DicomTransferSyntax_JPEGProcess14SV1) |
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308 { |
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309 return true; |
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310 } |
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311 #endif |
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312 |
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313 #if ORTHANC_ENABLE_DCMTK_JPEG_LOSSLESS == 1 |
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314 if (syntax == DicomTransferSyntax_JPEGLSLossless || |
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315 syntax == DicomTransferSyntax_JPEGLSLossy) |
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316 { |
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317 return true; |
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318 } |
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319 #endif |
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320 |
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321 return false; |
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322 } |
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323 |
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324 |
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325 |
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326 bool DcmtkTranscoder::TranscodeParsedToBuffer( |
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327 std::string& target /* out */, |
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328 DicomTransferSyntax& sourceSyntax /* out */, |
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329 DicomTransferSyntax& targetSyntax /* out */, |
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330 bool& hasSopInstanceUidChanged /* out */, |
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331 DcmFileFormat& dicom /* in, possibly modified */, |
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332 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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333 bool allowNewSopInstanceUid) |
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334 { |
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335 if (dicom.getDataset() == NULL) |
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336 { |
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337 throw OrthancException(ErrorCode_InternalError); |
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338 } |
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339 |
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340 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, dicom)) |
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341 { |
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342 LOG(ERROR) << "Unsupport transfer syntax for transcoding"; |
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343 return false; |
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344 } |
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345 |
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346 if (InplaceTranscode(hasSopInstanceUidChanged, dicom, allowedSyntaxes, allowNewSopInstanceUid)) |
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347 { |
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348 if (FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax, dicom) && |
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349 allowedSyntaxes.find(targetSyntax) != allowedSyntaxes.end() && |
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350 dicom.getDataset() != NULL) |
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351 { |
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352 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom.getDataset()); |
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353 return true; |
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354 } |
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355 else |
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356 { |
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357 throw OrthancException(ErrorCode_InternalError); |
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358 } |
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359 } |
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360 else |
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361 { |
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362 return false; |
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363 } |
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364 } |
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365 |
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366 |
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367 IDicomTranscoder::TranscodedDicom* DcmtkTranscoder::TranscodeToParsed( |
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368 DcmFileFormat& dicom /* in, possibly modified */, |
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369 const void* buffer /* in, same DICOM file as "dicom" */, |
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370 size_t size, |
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371 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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372 bool allowNewSopInstanceUid) |
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373 { |
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374 DicomTransferSyntax sourceSyntax; |
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375 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(sourceSyntax, dicom)) |
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376 { |
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377 LOG(ERROR) << "Unsupport transfer syntax for transcoding"; |
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378 return NULL; |
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379 } |
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380 |
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381 bool hasSopInstanceUidChanged; |
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382 |
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383 if (allowedSyntaxes.find(sourceSyntax) != allowedSyntaxes.end()) |
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384 { |
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385 // No transcoding is needed |
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386 return TranscodedDicom::CreateFromExternal(dicom, false /* no change in UID */); |
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387 } |
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388 else if (InplaceTranscode(hasSopInstanceUidChanged, dicom, |
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389 allowedSyntaxes, allowNewSopInstanceUid)) |
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390 { |
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391 return TranscodedDicom::CreateFromExternal(dicom, hasSopInstanceUidChanged); |
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392 } |
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393 else |
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394 { |
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395 // Cannot transcode |
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396 return NULL; |
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397 } |
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398 } |
3893 | 399 } |