Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancMoveRequestHandler.cpp @ 4695:651f069c7f77
fix error if overriding existing tag in the DICOM dictionary
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 17 Jun 2021 14:00:34 +0200 |
parents | c1f36fd13730 |
children | f0038043fb97 753f87dac208 |
rev | line source |
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619 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
619 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
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33 |
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34 #include "PrecompiledHeadersServer.h" |
619 | 35 #include "OrthancMoveRequestHandler.h" |
36 | |
4045 | 37 #include "../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
38 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
39 #include "../../OrthancFramework/Sources/Logging.h" | |
40 #include "../../OrthancFramework/Sources/MetricsRegistry.h" | |
41 | |
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42 #include "OrthancConfiguration.h" |
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43 #include "ServerContext.h" |
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44 #include "ServerJobs/DicomModalityStoreJob.h" |
619 | 45 |
3097 | 46 |
619 | 47 namespace Orthanc |
48 { | |
49 namespace | |
50 { | |
51 // Anonymous namespace to avoid clashes between compilation modules | |
52 | |
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53 class SynchronousMove : public IMoveRequestIterator |
619 | 54 { |
55 private: | |
56 ServerContext& context_; | |
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57 const std::string& localAet_; |
619 | 58 std::vector<std::string> instances_; |
59 size_t position_; | |
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60 RemoteModalityParameters remote_; |
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61 std::string originatorAet_; |
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62 uint16_t originatorId_; |
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63 std::unique_ptr<DicomStoreUserConnection> connection_; |
771 | 64 |
619 | 65 public: |
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66 SynchronousMove(ServerContext& context, |
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67 const std::string& targetAet, |
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68 const std::vector<std::string>& publicIds, |
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69 const std::string& originatorAet, |
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70 uint16_t originatorId) : |
619 | 71 context_(context), |
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72 localAet_(context.GetDefaultLocalApplicationEntityTitle()), |
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73 position_(0), |
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74 originatorAet_(originatorAet), |
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75 originatorId_(originatorId) |
619 | 76 { |
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77 { |
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78 OrthancConfiguration::ReaderLock lock; |
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79 remote_ = lock.GetConfiguration().GetModalityUsingAet(targetAet); |
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80 } |
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81 |
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82 for (size_t i = 0; i < publicIds.size(); i++) |
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83 { |
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84 CLOG(INFO, DICOM) << "Sending resource " << publicIds[i] << " to modality \"" |
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85 << targetAet << "\" in synchronous mode"; |
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86 |
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87 std::list<std::string> tmp; |
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88 context_.GetIndex().GetChildInstances(tmp, publicIds[i]); |
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89 |
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90 instances_.reserve(tmp.size()); |
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91 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it) |
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92 { |
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93 instances_.push_back(*it); |
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94 } |
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95 } |
619 | 96 } |
97 | |
98 virtual unsigned int GetSubOperationCount() const | |
99 { | |
100 return instances_.size(); | |
101 } | |
102 | |
103 virtual Status DoNext() | |
104 { | |
105 if (position_ >= instances_.size()) | |
106 { | |
107 return Status_Failure; | |
108 } | |
109 | |
110 const std::string& id = instances_[position_++]; | |
111 | |
112 std::string dicom; | |
2124 | 113 context_.ReadDicom(dicom, id); |
771 | 114 |
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115 if (connection_.get() == NULL) |
771 | 116 { |
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117 DicomAssociationParameters params(localAet_, remote_); |
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118 connection_.reset(new DicomStoreUserConnection(params)); |
771 | 119 } |
619 | 120 |
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121 std::string sopClassUid, sopInstanceUid; // Unused |
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122 context_.StoreWithTranscoding(sopClassUid, sopInstanceUid, *connection_, dicom, |
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123 true, originatorAet_, originatorId_); |
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124 |
619 | 125 return Status_Success; |
126 } | |
127 }; | |
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128 |
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129 |
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130 class AsynchronousMove : public IMoveRequestIterator |
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131 { |
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132 private: |
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133 ServerContext& context_; |
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134 std::unique_ptr<DicomModalityStoreJob> job_; |
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135 size_t position_; |
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136 size_t countInstances_; |
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137 |
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138 public: |
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139 AsynchronousMove(ServerContext& context, |
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140 const std::string& targetAet, |
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141 const std::vector<std::string>& publicIds, |
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142 const std::string& originatorAet, |
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143 uint16_t originatorId) : |
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144 context_(context), |
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145 job_(new DicomModalityStoreJob(context)), |
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146 position_(0) |
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147 { |
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148 job_->SetDescription("C-MOVE"); |
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149 //job_->SetPermissive(true); // This was the behavior of Orthanc < 1.6.0 |
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150 job_->SetPermissive(false); |
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151 job_->SetLocalAet(context.GetDefaultLocalApplicationEntityTitle()); |
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152 |
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153 { |
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154 OrthancConfiguration::ReaderLock lock; |
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155 job_->SetRemoteModality(lock.GetConfiguration().GetModalityUsingAet(targetAet)); |
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156 } |
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157 |
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158 if (originatorId != 0) |
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159 { |
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160 job_->SetMoveOriginator(originatorAet, originatorId); |
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161 } |
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162 |
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163 for (size_t i = 0; i < publicIds.size(); i++) |
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164 { |
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165 CLOG(INFO, DICOM) << "Sending resource " << publicIds[i] << " to modality \"" |
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166 << targetAet << "\" in asynchronous mode"; |
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167 |
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168 std::list<std::string> tmp; |
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169 context_.GetIndex().GetChildInstances(tmp, publicIds[i]); |
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170 |
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171 countInstances_ = tmp.size(); |
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172 |
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173 job_->Reserve(job_->GetCommandsCount() + tmp.size()); |
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174 |
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175 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it) |
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176 { |
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177 job_->AddInstance(*it); |
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178 } |
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179 } |
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180 } |
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181 |
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182 virtual unsigned int GetSubOperationCount() const |
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183 { |
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184 return countInstances_; |
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185 } |
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186 |
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187 virtual Status DoNext() |
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188 { |
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189 if (position_ >= countInstances_) |
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190 { |
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191 return Status_Failure; |
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192 } |
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193 |
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194 if (position_ == 0) |
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195 { |
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196 context_.GetJobsEngine().GetRegistry().Submit(job_.release(), 0 /* priority */); |
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197 } |
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198 |
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199 position_ ++; |
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200 return Status_Success; |
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201 } |
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202 }; |
619 | 203 } |
204 | |
205 | |
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206 static bool IsNonEmptyTag(const DicomMap& dicom, |
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207 const DicomTag& tag) |
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208 { |
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209 const DicomValue* value = dicom.TestAndGetValue(tag); |
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210 if (value == NULL || |
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211 value->IsNull() || |
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212 value->IsBinary()) |
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213 { |
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214 return false; |
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215 } |
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216 else |
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217 { |
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218 return !value->GetContent().empty(); |
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219 } |
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220 } |
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221 |
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222 |
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223 bool OrthancMoveRequestHandler::LookupIdentifiers(std::vector<std::string>& publicIds, |
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224 ResourceType level, |
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225 const DicomMap& input) |
619 | 226 { |
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227 DicomTag tag(0, 0); // Dummy initialization |
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228 |
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229 switch (level) |
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230 { |
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231 case ResourceType_Patient: |
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232 tag = DICOM_TAG_PATIENT_ID; |
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233 break; |
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234 |
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235 case ResourceType_Study: |
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236 // The test below using "IsNonEmptyTag()" fixes compatibility |
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237 // with Ambra C-FIND SCU: |
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238 // https://groups.google.com/g/orthanc-users/c/yIUnZ9v9-Zs/m/GQPXiAOiCQAJ |
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239 if (IsNonEmptyTag(input, DICOM_TAG_ACCESSION_NUMBER)) |
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240 { |
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241 tag = DICOM_TAG_ACCESSION_NUMBER; |
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242 } |
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243 else |
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244 { |
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245 tag = DICOM_TAG_STUDY_INSTANCE_UID; |
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246 } |
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247 break; |
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248 |
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249 case ResourceType_Series: |
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250 tag = DICOM_TAG_SERIES_INSTANCE_UID; |
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251 break; |
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252 |
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253 case ResourceType_Instance: |
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254 tag = DICOM_TAG_SOP_INSTANCE_UID; |
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255 break; |
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256 |
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257 default: |
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258 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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259 } |
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260 |
619 | 261 if (!input.HasTag(tag)) |
262 { | |
263 return false; | |
264 } | |
265 | |
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266 const DicomValue& value = input.GetValue(tag); |
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267 if (value.IsNull() || |
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268 value.IsBinary()) |
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269 { |
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270 return false; |
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271 } |
619 | 272 else |
273 { | |
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274 const std::string& content = value.GetContent(); |
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275 |
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276 /** |
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277 * This tokenization fixes issue 154 ("Matching against list of |
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278 * UID-s by C-MOVE"). |
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279 * https://bugs.orthanc-server.com/show_bug.cgi?id=154 |
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280 **/ |
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281 |
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282 std::vector<std::string> tokens; |
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283 Toolbox::TokenizeString(tokens, content, '\\'); |
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284 for (size_t i = 0; i < tokens.size(); i++) |
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285 { |
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286 std::vector<std::string> matches; |
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287 context_.GetIndex().LookupIdentifierExact(matches, level, tag, tokens[i]); |
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288 |
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289 // Concatenate "publicIds" with "matches" |
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290 publicIds.insert(publicIds.end(), matches.begin(), matches.end()); |
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291 } |
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292 |
619 | 293 return true; |
294 } | |
295 } | |
296 | |
297 | |
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298 static IMoveRequestIterator* CreateIterator(ServerContext& context, |
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299 const std::string& targetAet, |
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300 const std::vector<std::string>& publicIds, |
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301 const std::string& originatorAet, |
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302 uint16_t originatorId) |
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303 { |
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304 if (publicIds.empty()) |
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305 { |
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306 throw OrthancException(ErrorCode_BadRequest, |
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307 "C-MOVE request matching no resource stored in Orthanc"); |
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308 } |
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309 |
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310 bool synchronous; |
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311 |
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312 { |
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313 OrthancConfiguration::ReaderLock lock; |
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314 synchronous = lock.GetConfiguration().GetBooleanParameter("SynchronousCMove", true); |
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315 } |
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316 |
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317 if (synchronous) |
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318 { |
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319 return new SynchronousMove(context, targetAet, publicIds, originatorAet, originatorId); |
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320 } |
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321 else |
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322 { |
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323 return new AsynchronousMove(context, targetAet, publicIds, originatorAet, originatorId); |
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324 } |
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325 } |
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326 |
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327 |
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328 IMoveRequestIterator* OrthancMoveRequestHandler::Handle(const std::string& targetAet, |
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329 const DicomMap& input, |
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330 const std::string& originatorIp, |
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331 const std::string& originatorAet, |
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332 const std::string& calledAet, |
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333 uint16_t originatorId) |
619 | 334 { |
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335 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_move_scp_duration_ms"); |
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336 |
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337 CLOG(WARNING, DICOM) << "Move-SCU request received for AET \"" << targetAet << "\""; |
619 | 338 |
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339 { |
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340 DicomArray query(input); |
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341 for (size_t i = 0; i < query.GetSize(); i++) |
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342 { |
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343 if (!query.GetElement(i).GetValue().IsNull()) |
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344 { |
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345 CLOG(INFO, DICOM) << " (" << query.GetElement(i).GetTag().Format() |
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346 << ") " << FromDcmtkBridge::GetTagName(query.GetElement(i)) |
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347 << " = " << context_.GetDeidentifiedContent(query.GetElement(i)); |
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348 } |
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349 } |
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350 } |
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351 |
619 | 352 /** |
353 * Retrieve the query level. | |
354 **/ | |
355 | |
356 const DicomValue* levelTmp = input.TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL); | |
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357 |
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358 if (levelTmp == NULL || |
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359 levelTmp->IsNull() || |
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360 levelTmp->IsBinary()) |
619 | 361 { |
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362 // The query level is not present in the C-Move request, which |
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363 // does not follow the DICOM standard. This is for instance the |
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364 // behavior of Tudor DICOM. Try and automatically deduce the |
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365 // query level: Start from the instance level, going up to the |
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366 // patient level until a valid DICOM identifier is found. |
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367 |
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368 std::vector<std::string> publicIds; |
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369 |
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370 if (LookupIdentifiers(publicIds, ResourceType_Instance, input) || |
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371 LookupIdentifiers(publicIds, ResourceType_Series, input) || |
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372 LookupIdentifiers(publicIds, ResourceType_Study, input) || |
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373 LookupIdentifiers(publicIds, ResourceType_Patient, input)) |
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374 { |
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375 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId); |
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376 } |
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377 else |
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378 { |
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379 // No identifier is present in the request. |
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380 throw OrthancException(ErrorCode_BadRequest, "Invalid fields in a C-MOVE request"); |
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381 } |
619 | 382 } |
383 | |
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384 assert(levelTmp != NULL); |
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385 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str()); |
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386 |
619 | 387 |
388 /** | |
389 * Lookup for the resource to be sent. | |
390 **/ | |
391 | |
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392 std::vector<std::string> publicIds; |
619 | 393 |
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394 if (LookupIdentifiers(publicIds, level, input)) |
619 | 395 { |
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396 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId); |
619 | 397 } |
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398 else |
619 | 399 { |
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400 throw OrthancException(ErrorCode_BadRequest, "No DICOM identifier provided in the C-MOVE request for this query retrieve level"); |
619 | 401 } |
402 } | |
403 } |