Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestArchive.cpp @ 1050:64f1842aae2e

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Toolbox::ExecuteSystemCommand
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 23 Jul 2014 11:36:35 +0200
parents 6968356679c0
children 82567bac5e25
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "../PrecompiledHeadersServer.h"
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34 #include "OrthancRestApi.h"
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35
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36 #include "../../Core/Compression/HierarchicalZipWriter.h"
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37 #include "../../Core/HttpServer/FilesystemHttpSender.h"
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38 #include "../../Core/Uuid.h"
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39
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40 #include <glog/logging.h>
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41 #include <stdio.h>
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42
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43 #if defined(_MSC_VER)
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44 #define snprintf _snprintf
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45 #endif
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46
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47 static const uint64_t MEGA_BYTES = 1024 * 1024;
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48 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024;
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49
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50 namespace Orthanc
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51 {
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52 // Download of ZIP files ----------------------------------------------------
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53
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54 static std::string GetDirectoryNameInArchive(const Json::Value& resource,
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55 ResourceType resourceType)
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56 {
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57 switch (resourceType)
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58 {
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59 case ResourceType_Patient:
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60 {
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61 std::string p = resource["MainDicomTags"]["PatientID"].asString();
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62 std::string n = resource["MainDicomTags"]["PatientName"].asString();
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63 return p + " " + n;
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64 }
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65
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66 case ResourceType_Study:
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67 {
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68 return resource["MainDicomTags"]["StudyDescription"].asString();
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69 }
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70
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71 case ResourceType_Series:
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72 {
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73 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString();
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74 std::string m = resource["MainDicomTags"]["Modality"].asString();
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75 return m + " " + d;
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76 }
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77
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78 default:
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79 throw OrthancException(ErrorCode_InternalError);
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80 }
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81 }
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82
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83 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer,
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84 ServerContext& context,
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85 const Json::Value& resource,
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86 ResourceType resourceType)
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87 {
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88 if (resourceType == ResourceType_Patient)
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89 {
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90 return true;
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91 }
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92
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93 ResourceType parentType = GetParentResourceType(resourceType);
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94 Json::Value parent;
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95
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96 switch (resourceType)
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97 {
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98 case ResourceType_Study:
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99 {
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100 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType))
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101 {
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102 return false;
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103 }
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104
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105 break;
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106 }
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107
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108 case ResourceType_Series:
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109 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) ||
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110 !CreateRootDirectoryInArchive(writer, context, parent, parentType))
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111 {
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112 return false;
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113 }
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114 break;
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115
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116 default:
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117 throw OrthancException(ErrorCode_NotImplemented);
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118 }
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119
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120 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str());
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121 return true;
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122 }
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123
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124 static bool ArchiveInstance(HierarchicalZipWriter& writer,
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125 ServerContext& context,
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126 const std::string& instancePublicId,
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127 const char* filename)
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128 {
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129 Json::Value instance;
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130
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131 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance))
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132 {
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133 return false;
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134 }
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135
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136 writer.OpenFile(filename);
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137
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138 std::string dicom;
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139 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom);
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140 writer.Write(dicom);
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diff changeset
141
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142 return true;
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diff changeset
143 }
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diff changeset
144
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diff changeset
145 static bool ArchiveInternal(HierarchicalZipWriter& writer,
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146 ServerContext& context,
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147 const std::string& publicId,
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148 ResourceType resourceType,
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diff changeset
149 bool isFirstLevel)
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diff changeset
150 {
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diff changeset
151 Json::Value resource;
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diff changeset
152 if (!context.GetIndex().LookupResource(resource, publicId, resourceType))
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diff changeset
153 {
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diff changeset
154 return false;
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diff changeset
155 }
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parents:
diff changeset
156
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diff changeset
157 if (isFirstLevel &&
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158 !CreateRootDirectoryInArchive(writer, context, resource, resourceType))
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159 {
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160 return false;
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161 }
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162
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163 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str());
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164
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165 switch (resourceType)
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166 {
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167 case ResourceType_Patient:
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168 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++)
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169 {
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170 std::string studyId = resource["Studies"][i].asString();
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171 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false))
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172 {
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173 return false;
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174 }
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175 }
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176 break;
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177
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178 case ResourceType_Study:
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179 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++)
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180 {
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181 std::string seriesId = resource["Series"][i].asString();
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182 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false))
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diff changeset
183 {
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184 return false;
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185 }
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186 }
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187 break;
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188
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189 case ResourceType_Series:
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190 {
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191 // Create a filename prefix, depending on the modality
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192 char format[16] = "%08d";
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193
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194 if (resource["MainDicomTags"].isMember("Modality"))
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195 {
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196 std::string modality = resource["MainDicomTags"]["Modality"].asString();
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197
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198 if (modality.size() == 1)
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199 {
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200 snprintf(format, sizeof(format) - 1, "%c%%07d", toupper(modality[0]));
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201 }
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diff changeset
202 else if (modality.size() >= 2)
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diff changeset
203 {
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diff changeset
204 snprintf(format, sizeof(format) - 1, "%c%c%%06d", toupper(modality[0]), toupper(modality[1]));
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205 }
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parents:
diff changeset
206 }
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parents:
diff changeset
207
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diff changeset
208 char filename[16];
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parents:
diff changeset
209
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diff changeset
210 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++)
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diff changeset
211 {
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diff changeset
212 snprintf(filename, sizeof(filename) - 1, format, i);
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parents:
diff changeset
213
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diff changeset
214 std::string publicId = resource["Instances"][i].asString();
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diff changeset
215
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diff changeset
216 // This was the implementation up to Orthanc 0.7.0:
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diff changeset
217 // std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm";
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parents:
diff changeset
218
5197fd35333c refactoring of OrthancRestApi
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diff changeset
219 if (!ArchiveInstance(writer, context, publicId, filename))
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parents:
diff changeset
220 {
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parents:
diff changeset
221 return false;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
222 }
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parents:
diff changeset
223 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
224
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
225 break;
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parents:
diff changeset
226 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
227
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
228 default:
5197fd35333c refactoring of OrthancRestApi
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diff changeset
229 throw OrthancException(ErrorCode_InternalError);
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parents:
diff changeset
230 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
231
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
232 writer.CloseDirectory();
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
233 return true;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
234 }
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parents:
diff changeset
235
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
236 template <enum ResourceType resourceType>
974
83622b0f544c refactoring
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parents: 831
diff changeset
237 static void GetArchive(RestApiGetCall& call)
751
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
238 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
239 ServerContext& context = OrthancRestApi::GetContext(call);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
240
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
241 std::string id = call.GetUriComponent("id", "");
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parents:
diff changeset
242
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
243 /**
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
244 * Determine whether ZIP64 is required. Original ZIP format can
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
245 * store up to 2GB of data (some implementation supporting up to
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
246 * 4GB of data), and up to 65535 files.
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
247 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
248 **/
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
249
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
250 uint64_t uncompressedSize;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 uint64_t compressedSize;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
252 unsigned int countStudies;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
253 unsigned int countSeries;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
254 unsigned int countInstances;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
255 context.GetIndex().GetStatistics(compressedSize, uncompressedSize,
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
256 countStudies, countSeries, countInstances, id);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
257 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES ||
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
258 countInstances >= 65535);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
259
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
260 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size "
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
261 << (uncompressedSize / MEGA_BYTES) << "MB using the "
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
262 << (isZip64 ? "ZIP64" : "ZIP32") << " file format";
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
263
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
264 // Create a RAII for the temporary file to manage the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 Toolbox::TemporaryFile tmp;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
268 // Create a ZIP writer
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
269 HierarchicalZipWriter writer(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
270 writer.SetZip64(isZip64);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
271
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
272 // Store the requested resource into the ZIP
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parents:
diff changeset
273 if (!ArchiveInternal(writer, context, id, resourceType, true))
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
274 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
275 return;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
276 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
278
5197fd35333c refactoring of OrthancRestApi
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diff changeset
279 // Prepare the sending of the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 FilesystemHttpSender sender(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
281 sender.SetContentType("application/zip");
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
282 sender.SetDownloadFilename(id + ".zip");
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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284 // Send the ZIP
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285 call.GetOutput().AnswerFile(sender);
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286
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287 // The temporary file is automatically removed thanks to the RAII
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288 }
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289
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290
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291 void OrthancRestApi::RegisterArchive()
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292 {
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293 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>);
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294 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>);
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295 Register("/series/{id}/archive", GetArchive<ResourceType_Series>);
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296 }
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297 }