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annotate Core/DicomParsing/ParsedDicomFile.h @ 3486:5e9fae2faff2

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Sat, 03 Aug 2019 10:56:13 +0200
parents 63f59ad9381a
children 36c0ce0188cc
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2019 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #pragma once
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35
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36 #if !defined(ORTHANC_ENABLE_JPEG)
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37 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file
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38 #endif
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39
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40 #if !defined(ORTHANC_ENABLE_PNG)
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41 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file
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42 #endif
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43
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44 #if !defined(ORTHANC_ENABLE_CIVETWEB)
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45 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file
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46 #endif
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47
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48 #if !defined(ORTHANC_ENABLE_MONGOOSE)
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49 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file
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50 #endif
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51
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52 #if !defined(ORTHANC_SANDBOXED)
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53 # error The macro ORTHANC_SANDBOXED must be defined
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54 #endif
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55
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56 #include "ITagVisitor.h"
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57 #include "../DicomFormat/DicomInstanceHasher.h"
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58 #include "../Images/ImageAccessor.h"
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59 #include "../IDynamicObject.h"
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60 #include "../Toolbox.h"
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61
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62 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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63 # include "../RestApi/RestApiOutput.h"
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64 #endif
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65
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66 #include <boost/shared_ptr.hpp>
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68
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69 class DcmDataset;
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70 class DcmFileFormat;
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71
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72 namespace Orthanc
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73 {
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74 class ParsedDicomFile : public IDynamicObject
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75 {
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76 private:
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77 struct PImpl;
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78 boost::shared_ptr<PImpl> pimpl_;
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79
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80 ParsedDicomFile(ParsedDicomFile& other,
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81 bool keepSopInstanceUid);
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82
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83 void CreateFromDicomMap(const DicomMap& source,
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84 Encoding defaultEncoding,
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85 bool permissive);
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86
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87 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
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88
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89 void UpdateStorageUid(const DicomTag& tag,
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90 const std::string& value,
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91 bool decodeDataUriScheme);
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92
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93 void InvalidateCache();
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94
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95 bool EmbedContentInternal(const std::string& dataUriScheme);
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96
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97 public:
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98 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
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100 ParsedDicomFile(const DicomMap& map,
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101 Encoding defaultEncoding,
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102 bool permissive);
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103
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104 ParsedDicomFile(const void* content,
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105 size_t size);
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106
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107 ParsedDicomFile(const std::string& content);
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108
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109 ParsedDicomFile(DcmDataset& dicom);
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110
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111 ParsedDicomFile(DcmFileFormat& dicom);
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112
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113 DcmFileFormat& GetDcmtkObject() const;
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115 ParsedDicomFile* Clone(bool keepSopInstanceUid);
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116
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117 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
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118 void SendPathValue(RestApiOutput& output,
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119 const UriComponents& uri);
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120
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121 void Answer(RestApiOutput& output);
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122 #endif
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123
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124 void Remove(const DicomTag& tag);
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125
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126 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
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127 void Clear(const DicomTag& tag,
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128 bool onlyIfExists);
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129
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130 void Replace(const DicomTag& tag,
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131 const std::string& utf8Value,
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132 bool decodeDataUriScheme,
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133 DicomReplaceMode mode);
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134
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135 void Replace(const DicomTag& tag,
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136 const Json::Value& value, // Assumed to be encoded with UTF-8
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137 bool decodeDataUriScheme,
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138 DicomReplaceMode mode);
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139
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140 void Insert(const DicomTag& tag,
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141 const Json::Value& value, // Assumed to be encoded with UTF-8
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142 bool decodeDataUriScheme);
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143
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144 void ReplacePlainString(const DicomTag& tag,
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145 const std::string& utf8Value)
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146 {
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147 Replace(tag, utf8Value, false, DicomReplaceMode_InsertIfAbsent);
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148 }
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149
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150 void SetIfAbsent(const DicomTag& tag,
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151 const std::string& utf8Value)
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152 {
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153 std::string currentValue;
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154 if (!GetTagValue(currentValue, tag))
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155 {
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156 ReplacePlainString(tag, utf8Value);
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157 }
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158 }
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159
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160 void RemovePrivateTags()
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161 {
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162 RemovePrivateTagsInternal(NULL);
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163 }
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164
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165 void RemovePrivateTags(const std::set<DicomTag>& toKeep)
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166 {
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167 RemovePrivateTagsInternal(&toKeep);
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168 }
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169
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170 // WARNING: This function handles the decoding of strings to UTF8
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171 bool GetTagValue(std::string& value,
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172 const DicomTag& tag);
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173
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174 DicomInstanceHasher GetHasher();
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175
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176 void SaveToMemoryBuffer(std::string& buffer);
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177
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178 #if ORTHANC_SANDBOXED == 0
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179 void SaveToFile(const std::string& path);
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180 #endif
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181
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182 void EmbedContent(const std::string& dataUriScheme);
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183
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184 void EmbedImage(const ImageAccessor& accessor);
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185
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186 void EmbedImage(MimeType mime,
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187 const std::string& content);
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188
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189 Encoding DetectEncoding(bool& hasCodeExtensions) const;
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190
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191 // WARNING: This function only sets the encoding, it will not
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192 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
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193 void SetEncoding(Encoding encoding);
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194
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195 void DatasetToJson(Json::Value& target,
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196 DicomToJsonFormat format,
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197 DicomToJsonFlags flags,
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198 unsigned int maxStringLength);
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199
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200 void DatasetToJson(Json::Value& target,
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201 DicomToJsonFormat format,
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202 DicomToJsonFlags flags,
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diff changeset
203 unsigned int maxStringLength,
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204 const std::set<DicomTag>& ignoreTagLength);
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205
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206 // This version uses the default parameters for
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diff changeset
207 // FileContentType_DicomAsJson
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208 void DatasetToJson(Json::Value& target,
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209 const std::set<DicomTag>& ignoreTagLength);
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210
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211 void DatasetToJson(Json::Value& target);
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212
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213 void HeaderToJson(Json::Value& target,
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214 DicomToJsonFormat format);
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215
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216 bool HasTag(const DicomTag& tag) const;
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217
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218 void EmbedPdf(const std::string& pdf);
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219
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220 bool ExtractPdf(std::string& pdf);
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221
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222 void GetRawFrame(std::string& target, // OUT
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223 MimeType& mime, // OUT
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diff changeset
224 unsigned int frameId); // IN
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225
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226 unsigned int GetFramesCount() const;
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diff changeset
227
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228 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
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229 DicomFromJsonFlags flags);
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230
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231 void ChangeEncoding(Encoding target);
2209
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232
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233 void ExtractDicomSummary(DicomMap& target) const;
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234
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diff changeset
235 bool LookupTransferSyntax(std::string& result);
2281
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236
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
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diff changeset
237 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
2499
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238
83b8b6743531 ITagVisitor - for anonymization relationships
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239 void Apply(ITagVisitor& visitor);
790
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240 };
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241 }