Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestResources.cpp @ 1301:5d56cfa49f68
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author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Mon, 09 Feb 2015 15:31:29 +0100 |
parents | 6e7e5ed91c2d |
children | bba8a47922d1 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 #include "../PrecompiledHeadersServer.h" |
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34 #include "OrthancRestApi.h" |
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35 |
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36 #include "../ServerToolbox.h" |
795 | 37 #include "../FromDcmtkBridge.h" |
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38 |
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39 #include <glog/logging.h> |
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40 |
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41 namespace Orthanc |
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42 { |
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43 // List all the patients, studies, series or instances ---------------------- |
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44 |
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45 template <enum ResourceType resourceType> |
974 | 46 static void ListResources(RestApiGetCall& call) |
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47 { |
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48 Json::Value result; |
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49 OrthancRestApi::GetIndex(call).GetAllUuids(result, resourceType); |
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50 call.GetOutput().AnswerJson(result); |
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51 } |
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52 |
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53 template <enum ResourceType resourceType> |
974 | 54 static void GetSingleResource(RestApiGetCall& call) |
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55 { |
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56 Json::Value result; |
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57 if (OrthancRestApi::GetIndex(call).LookupResource(result, call.GetUriComponent("id", ""), resourceType)) |
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58 { |
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59 call.GetOutput().AnswerJson(result); |
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60 } |
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61 } |
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62 |
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63 template <enum ResourceType resourceType> |
974 | 64 static void DeleteSingleResource(RestApiDeleteCall& call) |
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65 { |
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66 Json::Value result; |
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67 if (OrthancRestApi::GetContext(call).DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) |
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68 { |
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69 call.GetOutput().AnswerJson(result); |
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70 } |
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71 } |
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72 |
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73 |
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74 // Get information about a single patient ----------------------------------- |
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75 |
974 | 76 static void IsProtectedPatient(RestApiGetCall& call) |
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77 { |
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78 std::string publicId = call.GetUriComponent("id", ""); |
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79 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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80 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", "text/plain"); |
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81 } |
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82 |
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83 |
974 | 84 static void SetPatientProtection(RestApiPutCall& call) |
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85 { |
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86 ServerContext& context = OrthancRestApi::GetContext(call); |
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87 |
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88 std::string publicId = call.GetUriComponent("id", ""); |
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89 std::string s = Toolbox::StripSpaces(call.GetPutBody()); |
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90 |
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91 if (s == "0") |
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92 { |
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93 context.GetIndex().SetProtectedPatient(publicId, false); |
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94 call.GetOutput().AnswerBuffer("", "text/plain"); |
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95 } |
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96 else if (s == "1") |
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97 { |
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98 context.GetIndex().SetProtectedPatient(publicId, true); |
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99 call.GetOutput().AnswerBuffer("", "text/plain"); |
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100 } |
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101 else |
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102 { |
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103 // Bad request |
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104 } |
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105 } |
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106 |
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107 |
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108 // Get information about a single instance ---------------------------------- |
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109 |
974 | 110 static void GetInstanceFile(RestApiGetCall& call) |
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111 { |
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112 ServerContext& context = OrthancRestApi::GetContext(call); |
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113 |
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114 std::string publicId = call.GetUriComponent("id", ""); |
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115 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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116 } |
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117 |
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118 |
974 | 119 static void ExportInstanceFile(RestApiPostCall& call) |
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120 { |
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121 ServerContext& context = OrthancRestApi::GetContext(call); |
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122 |
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123 std::string publicId = call.GetUriComponent("id", ""); |
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124 |
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125 std::string dicom; |
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126 context.ReadFile(dicom, publicId, FileContentType_Dicom); |
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127 |
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128 Toolbox::WriteFile(dicom, call.GetPostBody()); |
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129 |
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130 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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131 } |
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132 |
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133 |
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134 template <bool simplify> |
974 | 135 static void GetInstanceTags(RestApiGetCall& call) |
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136 { |
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137 ServerContext& context = OrthancRestApi::GetContext(call); |
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138 |
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139 std::string publicId = call.GetUriComponent("id", ""); |
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140 |
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141 if (simplify) |
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142 { |
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143 Json::Value full; |
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144 context.ReadJson(full, publicId); |
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145 |
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146 Json::Value simplified; |
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147 SimplifyTags(simplified, full); |
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148 call.GetOutput().AnswerJson(simplified); |
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149 } |
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150 else |
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151 { |
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152 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_DicomAsJson); |
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153 } |
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154 } |
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155 |
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156 |
974 | 157 static void GetInstanceTagsBis(RestApiGetCall& call) |
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158 { |
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159 bool simplify = call.HasArgument("simplify"); |
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160 |
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161 if (simplify) |
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162 { |
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163 GetInstanceTags<true>(call); |
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164 } |
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165 else |
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166 { |
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167 GetInstanceTags<false>(call); |
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168 } |
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169 } |
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170 |
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171 |
974 | 172 static void ListFrames(RestApiGetCall& call) |
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173 { |
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174 Json::Value instance; |
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175 if (OrthancRestApi::GetIndex(call).LookupResource(instance, call.GetUriComponent("id", ""), ResourceType_Instance)) |
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176 { |
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177 unsigned int numberOfFrames = 1; |
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178 |
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179 try |
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180 { |
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181 Json::Value tmp = instance["MainDicomTags"]["NumberOfFrames"]; |
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182 numberOfFrames = boost::lexical_cast<unsigned int>(tmp.asString()); |
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183 } |
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184 catch (...) |
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185 { |
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186 } |
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187 |
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188 Json::Value result = Json::arrayValue; |
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189 for (unsigned int i = 0; i < numberOfFrames; i++) |
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190 { |
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191 result.append(i); |
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192 } |
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193 |
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194 call.GetOutput().AnswerJson(result); |
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195 } |
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196 } |
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197 |
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198 |
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199 template <enum ImageExtractionMode mode> |
974 | 200 static void GetImage(RestApiGetCall& call) |
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201 { |
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202 ServerContext& context = OrthancRestApi::GetContext(call); |
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203 |
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204 std::string frameId = call.GetUriComponent("frame", "0"); |
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205 |
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206 unsigned int frame; |
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207 try |
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208 { |
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209 frame = boost::lexical_cast<unsigned int>(frameId); |
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210 } |
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211 catch (boost::bad_lexical_cast) |
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212 { |
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213 return; |
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214 } |
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215 |
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216 std::string publicId = call.GetUriComponent("id", ""); |
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217 std::string dicomContent, png; |
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218 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
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219 |
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220 ParsedDicomFile dicom(dicomContent); |
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221 |
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222 try |
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223 { |
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224 dicom.ExtractPngImage(png, frame, mode); |
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225 call.GetOutput().AnswerBuffer(png, "image/png"); |
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226 } |
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227 catch (OrthancException& e) |
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228 { |
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229 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange) |
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230 { |
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231 // The frame number is out of the range for this DICOM |
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232 // instance, the resource is not existent |
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233 } |
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234 else |
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235 { |
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236 std::string root = ""; |
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237 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
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238 { |
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239 root += "../"; |
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240 } |
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241 |
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242 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
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243 } |
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244 } |
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245 } |
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246 |
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247 |
974 | 248 static void GetMatlabImage(RestApiGetCall& call) |
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249 { |
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250 ServerContext& context = OrthancRestApi::GetContext(call); |
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251 |
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252 std::string frameId = call.GetUriComponent("frame", "0"); |
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253 |
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254 unsigned int frame; |
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255 try |
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256 { |
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257 frame = boost::lexical_cast<unsigned int>(frameId); |
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258 } |
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259 catch (boost::bad_lexical_cast) |
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260 { |
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261 return; |
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262 } |
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263 |
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264 std::string publicId = call.GetUriComponent("id", ""); |
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265 std::string dicomContent; |
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266 context.ReadFile(dicomContent, publicId, FileContentType_Dicom); |
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267 |
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268 ParsedDicomFile dicom(dicomContent); |
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269 ImageBuffer buffer; |
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270 dicom.ExtractImage(buffer, frame); |
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271 |
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272 ImageAccessor accessor(buffer.GetConstAccessor()); |
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273 |
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274 std::string result; |
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275 accessor.ToMatlabString(result); |
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276 |
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277 call.GetOutput().AnswerBuffer(result, "text/plain"); |
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278 } |
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279 |
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280 |
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281 |
974 | 282 static void GetResourceStatistics(RestApiGetCall& call) |
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283 { |
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284 std::string publicId = call.GetUriComponent("id", ""); |
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285 Json::Value result; |
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286 OrthancRestApi::GetIndex(call).GetStatistics(result, publicId); |
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287 call.GetOutput().AnswerJson(result); |
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288 } |
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289 |
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290 |
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291 |
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292 // Handling of metadata ----------------------------------------------------- |
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293 |
974 | 294 static void CheckValidResourceType(RestApiCall& call) |
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295 { |
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296 std::string resourceType = call.GetUriComponent("resourceType", ""); |
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297 StringToResourceType(resourceType.c_str()); |
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298 } |
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299 |
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300 |
974 | 301 static void ListMetadata(RestApiGetCall& call) |
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302 { |
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303 CheckValidResourceType(call); |
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304 |
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305 std::string publicId = call.GetUriComponent("id", ""); |
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306 std::list<MetadataType> metadata; |
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307 |
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308 OrthancRestApi::GetIndex(call).ListAvailableMetadata(metadata, publicId); |
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309 Json::Value result = Json::arrayValue; |
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310 |
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311 for (std::list<MetadataType>::const_iterator |
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312 it = metadata.begin(); it != metadata.end(); ++it) |
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313 { |
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314 result.append(EnumerationToString(*it)); |
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315 } |
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316 |
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317 call.GetOutput().AnswerJson(result); |
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318 } |
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319 |
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320 |
974 | 321 static void GetMetadata(RestApiGetCall& call) |
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322 { |
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323 CheckValidResourceType(call); |
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324 |
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325 std::string publicId = call.GetUriComponent("id", ""); |
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326 std::string name = call.GetUriComponent("name", ""); |
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327 MetadataType metadata = StringToMetadata(name); |
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328 |
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329 std::string value; |
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330 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, publicId, metadata)) |
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331 { |
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332 call.GetOutput().AnswerBuffer(value, "text/plain"); |
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333 } |
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334 } |
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335 |
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336 |
974 | 337 static void DeleteMetadata(RestApiDeleteCall& call) |
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338 { |
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339 CheckValidResourceType(call); |
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340 |
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341 std::string publicId = call.GetUriComponent("id", ""); |
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342 std::string name = call.GetUriComponent("name", ""); |
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343 MetadataType metadata = StringToMetadata(name); |
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344 |
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345 if (metadata >= MetadataType_StartUser && |
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346 metadata <= MetadataType_EndUser) |
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347 { |
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348 // It is forbidden to modify internal metadata |
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349 OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata); |
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350 call.GetOutput().AnswerBuffer("", "text/plain"); |
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351 } |
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352 } |
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353 |
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354 |
974 | 355 static void SetMetadata(RestApiPutCall& call) |
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356 { |
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357 CheckValidResourceType(call); |
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358 |
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359 std::string publicId = call.GetUriComponent("id", ""); |
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360 std::string name = call.GetUriComponent("name", ""); |
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361 MetadataType metadata = StringToMetadata(name); |
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362 std::string value = call.GetPutBody(); |
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363 |
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364 if (metadata >= MetadataType_StartUser && |
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365 metadata <= MetadataType_EndUser) |
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366 { |
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367 // It is forbidden to modify internal metadata |
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368 OrthancRestApi::GetIndex(call).SetMetadata(publicId, metadata, value); |
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369 call.GetOutput().AnswerBuffer("", "text/plain"); |
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370 } |
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371 } |
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372 |
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373 |
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374 |
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375 |
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376 // Handling of attached files ----------------------------------------------- |
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377 |
974 | 378 static void ListAttachments(RestApiGetCall& call) |
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379 { |
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380 std::string resourceType = call.GetUriComponent("resourceType", ""); |
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381 std::string publicId = call.GetUriComponent("id", ""); |
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382 std::list<FileContentType> attachments; |
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383 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
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384 |
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385 Json::Value result = Json::arrayValue; |
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386 |
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387 for (std::list<FileContentType>::const_iterator |
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388 it = attachments.begin(); it != attachments.end(); ++it) |
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389 { |
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390 result.append(EnumerationToString(*it)); |
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391 } |
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392 |
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393 call.GetOutput().AnswerJson(result); |
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394 } |
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395 |
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396 |
974 | 397 static bool GetAttachmentInfo(FileInfo& info, RestApiCall& call) |
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398 { |
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399 CheckValidResourceType(call); |
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400 |
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401 std::string publicId = call.GetUriComponent("id", ""); |
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402 std::string name = call.GetUriComponent("name", ""); |
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403 FileContentType contentType = StringToContentType(name); |
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404 |
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405 return OrthancRestApi::GetIndex(call).LookupAttachment(info, publicId, contentType); |
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406 } |
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407 |
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408 |
974 | 409 static void GetAttachmentOperations(RestApiGetCall& call) |
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410 { |
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411 FileInfo info; |
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412 if (GetAttachmentInfo(info, call)) |
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413 { |
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414 Json::Value operations = Json::arrayValue; |
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415 |
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416 operations.append("compressed-data"); |
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417 |
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418 if (info.GetCompressedMD5() != "") |
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419 { |
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420 operations.append("compressed-md5"); |
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421 } |
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422 |
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423 operations.append("compressed-size"); |
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424 operations.append("data"); |
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425 |
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426 if (info.GetUncompressedMD5() != "") |
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427 { |
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428 operations.append("md5"); |
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429 } |
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430 |
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431 operations.append("size"); |
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432 |
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433 if (info.GetCompressedMD5() != "" && |
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434 info.GetUncompressedMD5() != "") |
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435 { |
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436 operations.append("verify-md5"); |
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437 } |
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438 |
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439 call.GetOutput().AnswerJson(operations); |
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440 } |
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441 } |
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442 |
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443 |
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444 template <int uncompress> |
974 | 445 static void GetAttachmentData(RestApiGetCall& call) |
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446 { |
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447 ServerContext& context = OrthancRestApi::GetContext(call); |
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448 |
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449 CheckValidResourceType(call); |
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450 |
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451 std::string publicId = call.GetUriComponent("id", ""); |
1146
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452 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
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453 |
1146
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454 if (uncompress) |
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455 { |
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456 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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457 } |
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458 else |
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459 { |
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460 // Return the raw data (possibly compressed), as stored on the filesystem |
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461 std::string content; |
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462 context.ReadFile(content, publicId, type, false); |
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463 call.GetOutput().AnswerBuffer(content, "application/octet-stream"); |
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464 } |
751
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465 } |
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466 |
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467 |
974 | 468 static void GetAttachmentSize(RestApiGetCall& call) |
751
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469 { |
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470 FileInfo info; |
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471 if (GetAttachmentInfo(info, call)) |
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472 { |
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473 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), "text/plain"); |
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474 } |
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475 } |
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476 |
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477 |
974 | 478 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
751
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479 { |
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480 FileInfo info; |
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481 if (GetAttachmentInfo(info, call)) |
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482 { |
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483 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), "text/plain"); |
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484 } |
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|
485 } |
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|
486 |
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487 |
974 | 488 static void GetAttachmentMD5(RestApiGetCall& call) |
751
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489 { |
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490 FileInfo info; |
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491 if (GetAttachmentInfo(info, call) && |
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492 info.GetUncompressedMD5() != "") |
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|
493 { |
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494 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), "text/plain"); |
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495 } |
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|
496 } |
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|
497 |
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|
498 |
974 | 499 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
751
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|
500 { |
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|
501 FileInfo info; |
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502 if (GetAttachmentInfo(info, call) && |
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503 info.GetCompressedMD5() != "") |
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|
504 { |
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505 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), "text/plain"); |
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|
506 } |
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|
507 } |
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|
508 |
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|
509 |
974 | 510 static void VerifyAttachment(RestApiPostCall& call) |
751
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|
511 { |
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512 ServerContext& context = OrthancRestApi::GetContext(call); |
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513 CheckValidResourceType(call); |
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|
514 |
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515 std::string publicId = call.GetUriComponent("id", ""); |
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516 std::string name = call.GetUriComponent("name", ""); |
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|
517 |
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|
518 FileInfo info; |
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|
519 if (!GetAttachmentInfo(info, call) || |
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|
520 info.GetCompressedMD5() == "" || |
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|
521 info.GetUncompressedMD5() == "") |
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522 { |
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523 // Inexistent resource, or no MD5 available |
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524 return; |
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525 } |
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526 |
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527 bool ok = false; |
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528 |
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529 // First check whether the compressed data is correctly stored in the disk |
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530 std::string data; |
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531 context.ReadFile(data, publicId, StringToContentType(name), false); |
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532 |
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533 std::string actualMD5; |
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534 Toolbox::ComputeMD5(actualMD5, data); |
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535 |
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536 if (actualMD5 == info.GetCompressedMD5()) |
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537 { |
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538 // The compressed data is OK. If a compression algorithm was |
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539 // applied to it, now check the MD5 of the uncompressed data. |
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540 if (info.GetCompressionType() == CompressionType_None) |
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541 { |
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542 ok = true; |
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543 } |
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544 else |
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545 { |
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546 context.ReadFile(data, publicId, StringToContentType(name), true); |
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547 Toolbox::ComputeMD5(actualMD5, data); |
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548 ok = (actualMD5 == info.GetUncompressedMD5()); |
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549 } |
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550 } |
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|
551 |
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552 if (ok) |
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553 { |
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554 LOG(INFO) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
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555 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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556 } |
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557 else |
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558 { |
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559 LOG(INFO) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
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560 } |
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561 } |
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562 |
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563 |
974 | 564 static void UploadAttachment(RestApiPutCall& call) |
751
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565 { |
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566 ServerContext& context = OrthancRestApi::GetContext(call); |
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567 CheckValidResourceType(call); |
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568 |
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569 std::string publicId = call.GetUriComponent("id", ""); |
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570 std::string name = call.GetUriComponent("name", ""); |
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571 |
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572 const void* data = call.GetPutBody().size() ? &call.GetPutBody()[0] : NULL; |
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573 |
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574 FileContentType contentType = StringToContentType(name); |
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575 if (contentType >= FileContentType_StartUser && // It is forbidden to modify internal attachments |
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576 contentType <= FileContentType_EndUser && |
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577 context.AddAttachment(publicId, StringToContentType(name), data, call.GetPutBody().size())) |
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578 { |
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579 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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580 } |
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581 } |
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582 |
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583 |
974 | 584 static void DeleteAttachment(RestApiDeleteCall& call) |
751
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585 { |
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586 CheckValidResourceType(call); |
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587 |
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588 std::string publicId = call.GetUriComponent("id", ""); |
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589 std::string name = call.GetUriComponent("name", ""); |
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590 FileContentType contentType = StringToContentType(name); |
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591 |
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592 if (contentType >= FileContentType_StartUser && |
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593 contentType <= FileContentType_EndUser) |
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594 { |
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595 // It is forbidden to delete internal attachments |
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596 OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType); |
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597 call.GetOutput().AnswerBuffer("{}", "application/json"); |
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598 } |
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599 } |
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|
600 |
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601 |
782 | 602 // Raw access to the DICOM tags of an instance ------------------------------ |
603 | |
974 | 604 static void GetRawContent(RestApiGetCall& call) |
782 | 605 { |
606 std::string id = call.GetUriComponent("id", ""); | |
607 | |
608 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
609 | |
610 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
611 } | |
612 | |
751
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|
613 |
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614 |
960
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615 static bool ExtractSharedTags(Json::Value& shared, |
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616 ServerContext& context, |
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617 const std::string& publicId) |
958
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618 { |
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619 // Retrieve all the instances of this patient/study/series |
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620 typedef std::list<std::string> Instances; |
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621 Instances instances; |
959
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diff
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622 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
958
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623 |
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624 // Loop over the instances |
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625 bool isFirst = true; |
960
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626 shared = Json::objectValue; |
958
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627 |
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628 for (Instances::const_iterator it = instances.begin(); |
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629 it != instances.end(); it++) |
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630 { |
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631 // Get the tags of the current instance, in the simplified format |
960
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632 Json::Value tags; |
959
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633 |
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634 try |
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635 { |
960
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636 context.ReadJson(tags, *it); |
959
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637 } |
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638 catch (OrthancException&) |
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639 { |
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640 // Race condition: This instance has been removed since |
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641 // (*). Ignore this instance. |
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642 continue; |
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643 } |
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644 |
960
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645 if (tags.type() != Json::objectValue) |
958
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646 { |
960
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647 return false; // Error |
958
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648 } |
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649 |
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650 // Only keep the tags that are mapped to a string |
960
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651 Json::Value::Members members = tags.getMemberNames(); |
958
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652 for (size_t i = 0; i < members.size(); i++) |
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653 { |
960
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654 const Json::Value& tag = tags[members[i]]; |
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655 if (tag.type() != Json::objectValue || |
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656 tag["Type"].type() != Json::stringValue || |
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657 tag["Type"].asString() != "String") |
958
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658 { |
960
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659 tags.removeMember(members[i]); |
958
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660 } |
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661 } |
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662 |
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663 if (isFirst) |
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664 { |
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665 // This is the first instance, keep its tags as such |
960
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666 shared = tags; |
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667 isFirst = false; |
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668 } |
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669 else |
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670 { |
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671 // Loop over all the members of the shared tags extracted so |
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672 // far. If the value of one of these tags does not match its |
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673 // value in the current instance, remove it. |
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674 members = shared.getMemberNames(); |
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675 for (size_t i = 0; i < members.size(); i++) |
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676 { |
960
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677 if (!tags.isMember(members[i]) || |
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678 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
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679 { |
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680 shared.removeMember(members[i]); |
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681 } |
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682 } |
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683 } |
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684 } |
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|
685 |
960
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686 return true; |
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687 } |
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|
688 |
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689 |
974 | 690 static void GetSharedTags(RestApiGetCall& call) |
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691 { |
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692 ServerContext& context = OrthancRestApi::GetContext(call); |
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693 std::string publicId = call.GetUriComponent("id", ""); |
964
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694 bool simplify = call.HasArgument("simplify"); |
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695 |
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696 Json::Value sharedTags; |
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697 if (ExtractSharedTags(sharedTags, context, publicId)) |
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698 { |
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699 // Success: Send the value of the shared tags |
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700 if (simplify) |
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|
701 { |
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702 Json::Value simplified; |
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703 SimplifyTags(simplified, sharedTags); |
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704 call.GetOutput().AnswerJson(simplified); |
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705 } |
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|
706 else |
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|
707 { |
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|
708 call.GetOutput().AnswerJson(sharedTags); |
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|
709 } |
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|
710 } |
958
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|
711 } |
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|
712 |
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diff
changeset
|
713 |
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714 static void GetModuleInternal(RestApiGetCall& call, |
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715 ResourceType resourceType, |
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716 DicomModule module) |
963
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|
717 { |
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718 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
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719 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
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720 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
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|
721 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
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722 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
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723 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
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|
724 { |
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|
725 throw OrthancException(ErrorCode_NotImplemented); |
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|
726 } |
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diff
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|
727 |
963
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diff
changeset
|
728 ServerContext& context = OrthancRestApi::GetContext(call); |
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diff
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|
729 std::string publicId = call.GetUriComponent("id", ""); |
964
cc7a4ae474c1
simplify has a GET argument
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parents:
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diff
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|
730 bool simplify = call.HasArgument("simplify"); |
963
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|
731 |
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732 typedef std::set<DicomTag> ModuleTags; |
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|
733 ModuleTags moduleTags; |
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|
734 DicomTag::GetTagsForModule(moduleTags, module); |
963
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diff
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|
735 |
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960
diff
changeset
|
736 Json::Value tags; |
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diff
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|
737 |
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diff
changeset
|
738 if (resourceType != ResourceType_Instance) |
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diff
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|
739 { |
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|
740 // Retrieve all the instances of this patient/study/series |
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|
741 typedef std::list<std::string> Instances; |
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742 Instances instances; |
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diff
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|
743 context.GetIndex().GetChildInstances(instances, publicId); |
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diff
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|
744 |
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diff
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|
745 if (instances.empty()) |
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diff
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|
746 { |
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|
747 return; // Error: No instance (should never happen) |
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diff
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748 } |
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diff
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|
749 |
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diff
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|
750 // Select one child instance |
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diff
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|
751 publicId = instances.front(); |
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|
752 } |
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diff
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|
753 |
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diff
changeset
|
754 context.ReadJson(tags, publicId); |
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diff
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|
755 |
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diff
changeset
|
756 // Filter the tags of the instance according to the module |
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diff
changeset
|
757 Json::Value result = Json::objectValue; |
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|
758 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); tag++) |
963
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parents:
960
diff
changeset
|
759 { |
1276
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diff
changeset
|
760 std::string s = tag->Format(); |
963
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diff
changeset
|
761 if (tags.isMember(s)) |
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diff
changeset
|
762 { |
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diff
changeset
|
763 result[s] = tags[s]; |
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diff
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|
764 } |
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diff
changeset
|
765 } |
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diff
changeset
|
766 |
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960
diff
changeset
|
767 if (simplify) |
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parents:
960
diff
changeset
|
768 { |
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diff
changeset
|
769 Json::Value simplified; |
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diff
changeset
|
770 SimplifyTags(simplified, result); |
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diff
changeset
|
771 call.GetOutput().AnswerJson(simplified); |
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diff
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|
772 } |
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diff
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|
773 else |
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diff
changeset
|
774 { |
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960
diff
changeset
|
775 call.GetOutput().AnswerJson(result); |
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diff
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|
776 } |
1701dcb6f554
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diff
changeset
|
777 } |
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778 |
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779 |
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780 |
1276
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781 template <enum ResourceType resourceType, |
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782 enum DicomModule module> |
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783 static void GetModule(RestApiGetCall& call) |
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784 { |
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785 GetModuleInternal(call, resourceType, module); |
963
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786 } |
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787 |
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788 |
1139
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789 static void Lookup(RestApiPostCall& call) |
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790 { |
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791 typedef std::list< std::pair<ResourceType, std::string> > Resources; |
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792 |
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793 std::string tag = call.GetPostBody(); |
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794 Resources resources; |
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795 |
1162 | 796 OrthancRestApi::GetIndex(call).LookupIdentifier(resources, tag); |
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797 |
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798 Json::Value result = Json::arrayValue; |
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799 |
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800 for (Resources::const_iterator it = resources.begin(); |
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801 it != resources.end(); it++) |
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802 { |
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803 ResourceType type = it->first; |
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804 const std::string& id = it->second; |
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805 |
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806 Json::Value item = Json::objectValue; |
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807 item["Type"] = EnumerationToString(type); |
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808 item["ID"] = id; |
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809 item["Path"] = GetBasePath(type, id); |
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810 |
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811 result.append(item); |
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812 } |
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813 |
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814 call.GetOutput().AnswerJson(result); |
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815 } |
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816 |
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817 |
1140
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818 template <enum ResourceType start, |
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819 enum ResourceType end> |
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820 static void GetChildResources(RestApiGetCall& call) |
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821 { |
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822 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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823 |
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824 std::list<std::string> a, b, c; |
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825 a.push_back(call.GetUriComponent("id", "")); |
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826 |
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827 ResourceType type = start; |
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828 while (type != end) |
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829 { |
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830 b.clear(); |
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831 |
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832 for (std::list<std::string>::const_iterator |
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833 it = a.begin(); it != a.end(); it++) |
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834 { |
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835 index.GetChildren(c, *it); |
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836 b.splice(b.begin(), c); |
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837 } |
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838 |
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839 switch (type) |
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840 { |
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841 case ResourceType_Patient: |
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842 type = ResourceType_Study; |
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843 break; |
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844 |
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845 case ResourceType_Study: |
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846 type = ResourceType_Series; |
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847 break; |
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848 |
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849 case ResourceType_Series: |
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850 type = ResourceType_Instance; |
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851 break; |
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852 |
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853 default: |
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854 throw OrthancException(ErrorCode_InternalError); |
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855 } |
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856 |
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857 a.clear(); |
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858 a.splice(a.begin(), b); |
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859 } |
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860 |
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861 Json::Value result = Json::arrayValue; |
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862 |
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863 for (std::list<std::string>::const_iterator |
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864 it = a.begin(); it != a.end(); it++) |
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865 { |
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866 Json::Value item; |
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867 |
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868 if (OrthancRestApi::GetIndex(call).LookupResource(item, *it, end)) |
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869 { |
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870 result.append(item); |
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871 } |
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872 } |
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873 |
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874 call.GetOutput().AnswerJson(result); |
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875 } |
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876 |
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877 |
1166
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878 static void GetChildInstancesTags(RestApiGetCall& call) |
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879 { |
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880 ServerContext& context = OrthancRestApi::GetContext(call); |
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881 std::string publicId = call.GetUriComponent("id", ""); |
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882 bool simplify = call.HasArgument("simplify"); |
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883 |
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884 // Retrieve all the instances of this patient/study/series |
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885 typedef std::list<std::string> Instances; |
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886 Instances instances; |
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887 |
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888 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
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889 |
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890 Json::Value result = Json::objectValue; |
1166
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891 |
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892 for (Instances::const_iterator it = instances.begin(); |
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893 it != instances.end(); it++) |
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894 { |
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895 Json::Value full; |
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896 context.ReadJson(full, *it); |
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897 |
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898 if (simplify) |
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899 { |
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900 Json::Value simplified; |
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901 SimplifyTags(simplified, full); |
1201
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902 result[*it] = simplified; |
1166
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903 } |
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904 else |
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905 { |
1201
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906 result[*it] = full; |
1166
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907 } |
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908 } |
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909 |
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910 call.GetOutput().AnswerJson(result); |
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911 } |
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912 |
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913 |
1140
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914 |
1281
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915 template <enum ResourceType start, |
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916 enum ResourceType end> |
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917 static void GetParentResource(RestApiGetCall& call) |
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918 { |
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919 assert(start > end); |
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920 |
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921 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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922 |
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923 std::string current = call.GetUriComponent("id", ""); |
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924 ResourceType currentType = start; |
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925 while (currentType > end) |
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926 { |
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927 std::string parent; |
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928 if (!index.LookupParent(parent, current)) |
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929 { |
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930 // Error that could happen if the resource gets deleted by |
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931 // another concurrent call |
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|
932 return; |
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933 } |
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|
934 |
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935 current = parent; |
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936 switch (currentType) |
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937 { |
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938 case ResourceType_Instance: currentType = ResourceType_Series; break; |
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939 case ResourceType_Series: currentType = ResourceType_Study; break; |
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940 case ResourceType_Study: currentType = ResourceType_Patient; break; |
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941 default: throw OrthancException(ErrorCode_InternalError); |
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|
942 } |
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943 } |
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|
944 |
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|
945 assert(currentType == end); |
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|
946 |
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|
947 Json::Value result; |
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948 if (index.LookupResource(result, current, end)) |
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|
949 { |
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|
950 call.GetOutput().AnswerJson(result); |
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|
951 } |
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|
952 } |
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|
953 |
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diff
changeset
|
954 |
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|
955 |
751
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|
956 void OrthancRestApi::RegisterResources() |
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|
957 { |
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|
958 Register("/instances", ListResources<ResourceType_Instance>); |
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|
959 Register("/patients", ListResources<ResourceType_Patient>); |
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|
960 Register("/series", ListResources<ResourceType_Series>); |
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|
961 Register("/studies", ListResources<ResourceType_Study>); |
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|
962 |
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|
963 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
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changeset
|
964 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
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changeset
|
965 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
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diff
changeset
|
966 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
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|
967 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
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changeset
|
968 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
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parents:
diff
changeset
|
969 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
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diff
changeset
|
970 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
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|
971 |
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|
972 Register("/instances/{id}/statistics", GetResourceStatistics); |
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diff
changeset
|
973 Register("/patients/{id}/statistics", GetResourceStatistics); |
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diff
changeset
|
974 Register("/studies/{id}/statistics", GetResourceStatistics); |
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|
975 Register("/series/{id}/statistics", GetResourceStatistics); |
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diff
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|
976 |
964
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963
diff
changeset
|
977 Register("/patients/{id}/shared-tags", GetSharedTags); |
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simplify has a GET argument
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963
diff
changeset
|
978 Register("/series/{id}/shared-tags", GetSharedTags); |
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963
diff
changeset
|
979 Register("/studies/{id}/shared-tags", GetSharedTags); |
958
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diff
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|
980 |
1276
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1201
diff
changeset
|
981 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
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1201
diff
changeset
|
982 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
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1201
diff
changeset
|
983 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
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1201
diff
changeset
|
984 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
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parents:
1201
diff
changeset
|
985 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
963
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960
diff
changeset
|
986 |
751
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|
987 Register("/instances/{id}/file", GetInstanceFile); |
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diff
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|
988 Register("/instances/{id}/export", ExportInstanceFile); |
964
cc7a4ae474c1
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963
diff
changeset
|
989 Register("/instances/{id}/tags", GetInstanceTagsBis); |
751
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diff
changeset
|
990 Register("/instances/{id}/simplified-tags", GetInstanceTags<true>); |
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changeset
|
991 Register("/instances/{id}/frames", ListFrames); |
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diff
changeset
|
992 |
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diff
changeset
|
993 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
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diff
changeset
|
994 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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parents:
diff
changeset
|
995 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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996 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
874
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download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
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997 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
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998 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
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999 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
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1000 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
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parents:
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1001 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
874
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download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1002 Register("/instances/{id}/matlab", GetMatlabImage); |
751
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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1003 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1004 Register("/patients/{id}/protected", IsProtectedPatient); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1005 Register("/patients/{id}/protected", SetPatientProtection); |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1006 |
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1007 Register("/{resourceType}/{id}/metadata", ListMetadata); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1008 Register("/{resourceType}/{id}/metadata/{name}", DeleteMetadata); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1009 Register("/{resourceType}/{id}/metadata/{name}", GetMetadata); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1010 Register("/{resourceType}/{id}/metadata/{name}", SetMetadata); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1011 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1012 Register("/{resourceType}/{id}/attachments", ListAttachments); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1013 Register("/{resourceType}/{id}/attachments/{name}", DeleteAttachment); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1014 Register("/{resourceType}/{id}/attachments/{name}", GetAttachmentOperations); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1015 Register("/{resourceType}/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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1016 Register("/{resourceType}/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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1017 Register("/{resourceType}/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1018 Register("/{resourceType}/{id}/attachments/{name}/data", GetAttachmentData<1>); |
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refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1019 Register("/{resourceType}/{id}/attachments/{name}/md5", GetAttachmentMD5); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1020 Register("/{resourceType}/{id}/attachments/{name}/size", GetAttachmentSize); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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1021 Register("/{resourceType}/{id}/attachments/{name}/verify-md5", VerifyAttachment); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1022 Register("/{resourceType}/{id}/attachments/{name}", UploadAttachment); |
782 | 1023 |
1139
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/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
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|
1024 Register("/tools/lookup", Lookup); |
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parents:
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changeset
|
1025 |
1140
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URIs to get all the children of a given resource in a single REST call
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parents:
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diff
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1026 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
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1027 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
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1028 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
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1029 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
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parents:
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diff
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|
1030 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1031 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1032 |
1281
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1033 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
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1034 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
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1035 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
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parents:
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|
1036 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
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changeset
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1037 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
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|
1038 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
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diff
changeset
|
1039 |
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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1040 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
1041 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
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changeset
|
1042 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
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bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
1043 |
782 | 1044 Register("/instances/{id}/content/*", GetRawContent); |
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|
1045 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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1046 } |