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annotate OrthancServer/Sources/Database/PrepareDatabase.sql @ 5334:5b2a5cc64cb1

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upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 27 Jun 2023 15:12:39 +0200
parents 261ce0ed85e6
children 48b8dae6dc77
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1 -- Orthanc - A Lightweight, RESTful DICOM Store
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2 -- Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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3 -- Department, University Hospital of Liege, Belgium
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4 -- Copyright (C) 2017-2023 Osimis S.A., Belgium
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5 -- Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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6 --
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7 -- This program is free software: you can redistribute it and/or
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8 -- modify it under the terms of the GNU General Public License as
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9 -- published by the Free Software Foundation, either version 3 of the
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10 -- License, or (at your option) any later version.
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11 --
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12 -- This program is distributed in the hope that it will be useful, but
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13 -- WITHOUT ANY WARRANTY; without even the implied warranty of
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14 -- MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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15 -- General Public License for more details.
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16 --
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17 -- You should have received a copy of the GNU General Public License
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18 -- along with this program. If not, see <http://www.gnu.org/licenses/>.
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21 CREATE TABLE GlobalProperties(
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22 property INTEGER PRIMARY KEY,
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23 value TEXT
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24 );
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25
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26 CREATE TABLE Resources(
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27 internalId INTEGER PRIMARY KEY AUTOINCREMENT,
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28 resourceType INTEGER,
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29 publicId TEXT,
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30 parentId INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE
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31 );
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32
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33 CREATE TABLE MainDicomTags(
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34 id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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35 tagGroup INTEGER,
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36 tagElement INTEGER,
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37 value TEXT,
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38 PRIMARY KEY(id, tagGroup, tagElement)
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39 );
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40
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41 -- The following table was added in Orthanc 0.8.5 (database v5)
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42 CREATE TABLE DicomIdentifiers(
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43 id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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44 tagGroup INTEGER,
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45 tagElement INTEGER,
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46 value TEXT,
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47 PRIMARY KEY(id, tagGroup, tagElement)
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48 );
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49
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50 CREATE TABLE Metadata(
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51 id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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52 type INTEGER,
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53 value TEXT,
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54 PRIMARY KEY(id, type)
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55 );
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56
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57 CREATE TABLE AttachedFiles(
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58 id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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59 fileType INTEGER,
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60 uuid TEXT,
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61 compressedSize INTEGER,
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62 uncompressedSize INTEGER,
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63 compressionType INTEGER,
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64 uncompressedMD5 TEXT, -- New in Orthanc 0.7.3 (database v4)
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65 compressedMD5 TEXT, -- New in Orthanc 0.7.3 (database v4)
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66 PRIMARY KEY(id, fileType)
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67 );
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69 CREATE TABLE Changes(
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70 seq INTEGER PRIMARY KEY AUTOINCREMENT,
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71 changeType INTEGER,
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72 internalId INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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73 resourceType INTEGER,
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74 date TEXT
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75 );
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76
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77 CREATE TABLE ExportedResources(
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78 seq INTEGER PRIMARY KEY AUTOINCREMENT,
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79 resourceType INTEGER,
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80 publicId TEXT,
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81 remoteModality TEXT,
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82 patientId TEXT,
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83 studyInstanceUid TEXT,
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84 seriesInstanceUid TEXT,
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85 sopInstanceUid TEXT,
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86 date TEXT
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87 );
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88
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89 CREATE TABLE PatientRecyclingOrder(
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90 seq INTEGER PRIMARY KEY AUTOINCREMENT,
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91 patientId INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE
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92 );
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93
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94 -- New in Orthanc 1.12.0
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95 CREATE TABLE Labels(
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96 id INTEGER REFERENCES Resources(internalId) ON DELETE CASCADE,
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97 label TEXT NOT NULL,
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98 PRIMARY KEY(id, label) -- Prevents duplicates
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99 );
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100
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101 CREATE INDEX ChildrenIndex ON Resources(parentId);
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102 CREATE INDEX PublicIndex ON Resources(publicId);
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103 CREATE INDEX ResourceTypeIndex ON Resources(resourceType);
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104 CREATE INDEX PatientRecyclingIndex ON PatientRecyclingOrder(patientId);
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105
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106 CREATE INDEX MainDicomTagsIndex1 ON MainDicomTags(id);
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107 -- The 2 following indexes were removed in Orthanc 0.8.5 (database v5), to speed up
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108 -- CREATE INDEX MainDicomTagsIndex2 ON MainDicomTags(tagGroup, tagElement);
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109 -- CREATE INDEX MainDicomTagsIndexValues ON MainDicomTags(value COLLATE BINARY);
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110
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111 -- The 3 following indexes were added in Orthanc 0.8.5 (database v5)
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112 CREATE INDEX DicomIdentifiersIndex1 ON DicomIdentifiers(id);
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113 CREATE INDEX DicomIdentifiersIndex2 ON DicomIdentifiers(tagGroup, tagElement);
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114 CREATE INDEX DicomIdentifiersIndexValues ON DicomIdentifiers(value COLLATE BINARY);
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115
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116 CREATE INDEX ChangesIndex ON Changes(internalId);
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117
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118 -- New in Orthanc 1.12.0
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119 CREATE INDEX LabelsIndex1 ON Labels(id);
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120 CREATE INDEX LabelsIndex2 ON Labels(label); -- This index allows efficient lookups
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121
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122 CREATE TRIGGER AttachedFileDeleted
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123 AFTER DELETE ON AttachedFiles
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124 BEGIN
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125 SELECT SignalFileDeleted(old.uuid, old.fileType, old.uncompressedSize,
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126 old.compressionType, old.compressedSize,
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127 -- These 2 arguments are new in Orthanc 0.7.3 (database v4)
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128 old.uncompressedMD5, old.compressedMD5);
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129 END;
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130
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131 CREATE TRIGGER ResourceDeleted
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132 AFTER DELETE ON Resources
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133 BEGIN
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134 SELECT SignalResourceDeleted(old.publicId, old.resourceType); -- New in Orthanc 0.8.5 (db v5)
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135 SELECT SignalRemainingAncestor(parent.publicId, parent.resourceType)
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136 FROM Resources AS parent WHERE internalId = old.parentId;
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137 END;
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138
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139 -- Delete a parent resource when its unique child is deleted
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140 CREATE TRIGGER ResourceDeletedParentCleaning
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141 AFTER DELETE ON Resources
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142 FOR EACH ROW WHEN (SELECT COUNT(*) FROM Resources WHERE parentId = old.parentId) = 0
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143 BEGIN
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144 DELETE FROM Resources WHERE internalId = old.parentId;
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145 END;
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146
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147 CREATE TRIGGER PatientAdded
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148 AFTER INSERT ON Resources
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149 FOR EACH ROW WHEN new.resourceType = 1 -- "1" corresponds to "ResourceType_Patient" in C++
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150 BEGIN
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151 INSERT INTO PatientRecyclingOrder VALUES (NULL, new.internalId);
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152 END;
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153
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154
252
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155 -- Set the version of the database schema
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156 -- The "1" corresponds to the "GlobalProperty_DatabaseSchemaVersion" enumeration
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157 INSERT INTO GlobalProperties VALUES (1, "6");