Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/IDicomTranscoder.cpp @ 4697:569d9ef165b1
Added "short", "simplify" and/or "full" options to control the format of DICOM tags wherever possible
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 18 Jun 2021 16:08:35 +0200 |
parents | d9473bd5ed43 |
children | 7053502fbf97 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Lesser General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 #include "../PrecompiledHeaders.h" |
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24 #include "IDicomTranscoder.h" |
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25 |
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26 #include "../OrthancException.h" |
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27 #include "FromDcmtkBridge.h" |
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28 #include "ParsedDicomFile.h" |
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29 |
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30 #include <dcmtk/dcmdata/dcfilefo.h> |
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31 #include <dcmtk/dcmdata/dcdeftag.h> |
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32 |
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33 namespace Orthanc |
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34 { |
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35 IDicomTranscoder::TranscodingType IDicomTranscoder::GetTranscodingType(DicomTransferSyntax target, |
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36 DicomTransferSyntax source) |
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37 { |
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38 if (target == source) |
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39 { |
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40 return TranscodingType_Lossless; |
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41 } |
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42 else if (target == DicomTransferSyntax_LittleEndianImplicit || |
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43 target == DicomTransferSyntax_LittleEndianExplicit || |
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44 target == DicomTransferSyntax_BigEndianExplicit || |
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45 target == DicomTransferSyntax_DeflatedLittleEndianExplicit || |
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46 target == DicomTransferSyntax_JPEGProcess14 || |
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47 target == DicomTransferSyntax_JPEGProcess14SV1 || |
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48 target == DicomTransferSyntax_JPEGLSLossless || |
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49 target == DicomTransferSyntax_JPEG2000LosslessOnly || |
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50 target == DicomTransferSyntax_JPEG2000MulticomponentLosslessOnly) |
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51 { |
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52 return TranscodingType_Lossless; |
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53 } |
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54 else if (target == DicomTransferSyntax_JPEGProcess1 || |
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55 target == DicomTransferSyntax_JPEGProcess2_4 || |
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56 target == DicomTransferSyntax_JPEGLSLossy || |
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57 target == DicomTransferSyntax_JPEG2000 || |
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58 target == DicomTransferSyntax_JPEG2000Multicomponent) |
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59 { |
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60 return TranscodingType_Lossy; |
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61 } |
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62 else |
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63 { |
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64 return TranscodingType_Unknown; |
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65 } |
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66 } |
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67 |
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68 |
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69 std::string IDicomTranscoder::GetSopInstanceUid(DcmFileFormat& dicom) |
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70 { |
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71 if (dicom.getDataset() == NULL) |
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72 { |
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73 throw OrthancException(ErrorCode_InternalError); |
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74 } |
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75 |
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76 DcmDataset& dataset = *dicom.getDataset(); |
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77 |
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78 const char* v = NULL; |
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79 |
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80 if (dataset.findAndGetString(DCM_SOPInstanceUID, v).good() && |
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81 v != NULL) |
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82 { |
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83 return std::string(v); |
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84 } |
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85 else |
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86 { |
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87 throw OrthancException(ErrorCode_BadFileFormat, "File without SOP instance UID"); |
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88 } |
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89 } |
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90 |
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91 |
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92 void IDicomTranscoder::CheckTranscoding(IDicomTranscoder::DicomImage& transcoded, |
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93 DicomTransferSyntax sourceSyntax, |
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94 const std::string& sourceSopInstanceUid, |
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95 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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96 bool allowNewSopInstanceUid) |
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97 { |
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98 DcmFileFormat& parsed = transcoded.GetParsed(); |
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99 |
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100 if (parsed.getDataset() == NULL) |
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101 { |
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102 throw OrthancException(ErrorCode_InternalError); |
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103 } |
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104 |
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105 std::string targetSopInstanceUid = GetSopInstanceUid(parsed); |
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106 |
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107 if (parsed.getDataset()->tagExists(DCM_PixelData)) |
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108 { |
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109 if (!allowNewSopInstanceUid && (targetSopInstanceUid != sourceSopInstanceUid)) |
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110 { |
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111 throw OrthancException(ErrorCode_InternalError); |
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112 } |
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113 } |
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114 else |
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115 { |
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116 if (targetSopInstanceUid != sourceSopInstanceUid) |
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117 { |
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118 throw OrthancException(ErrorCode_InternalError, |
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119 "No pixel data: Transcoding must not change the SOP instance UID"); |
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120 } |
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121 } |
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122 |
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123 DicomTransferSyntax targetSyntax; |
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124 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(targetSyntax, parsed)) |
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125 { |
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126 return; // Unknown transfer syntax, cannot do further test |
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127 } |
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128 |
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129 if (allowedSyntaxes.find(sourceSyntax) != allowedSyntaxes.end()) |
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130 { |
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131 // No transcoding should have happened |
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132 if (targetSopInstanceUid != sourceSopInstanceUid) |
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133 { |
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134 throw OrthancException(ErrorCode_InternalError); |
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135 } |
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136 } |
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137 |
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138 if (allowedSyntaxes.find(targetSyntax) == allowedSyntaxes.end()) |
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139 { |
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140 throw OrthancException(ErrorCode_InternalError, "An incorrect output transfer syntax was chosen"); |
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141 } |
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142 |
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143 if (parsed.getDataset()->tagExists(DCM_PixelData)) |
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144 { |
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145 switch (GetTranscodingType(targetSyntax, sourceSyntax)) |
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146 { |
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147 case TranscodingType_Lossy: |
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148 if (targetSopInstanceUid == sourceSopInstanceUid) |
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149 { |
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150 throw OrthancException(ErrorCode_InternalError); |
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151 } |
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152 break; |
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153 |
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154 case TranscodingType_Lossless: |
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155 if (targetSopInstanceUid != sourceSopInstanceUid) |
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156 { |
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157 throw OrthancException(ErrorCode_InternalError); |
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158 } |
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159 break; |
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160 |
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161 default: |
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162 break; |
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163 } |
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164 } |
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165 } |
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167 |
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168 void IDicomTranscoder::DicomImage::Parse() |
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169 { |
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170 if (parsed_.get() != NULL) |
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171 { |
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172 // Already parsed |
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173 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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174 } |
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175 else if (buffer_.get() != NULL) |
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176 { |
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177 if (isExternalBuffer_) |
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178 { |
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179 throw OrthancException(ErrorCode_InternalError); |
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180 } |
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181 else |
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182 { |
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183 parsed_.reset(FromDcmtkBridge::LoadFromMemoryBuffer( |
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184 buffer_->empty() ? NULL : buffer_->c_str(), buffer_->size())); |
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185 |
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186 if (parsed_.get() == NULL) |
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187 { |
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188 throw OrthancException(ErrorCode_BadFileFormat); |
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189 } |
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190 } |
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191 } |
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192 else if (isExternalBuffer_) |
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193 { |
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194 parsed_.reset(FromDcmtkBridge::LoadFromMemoryBuffer(externalBuffer_, externalSize_)); |
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195 |
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196 if (parsed_.get() == NULL) |
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197 { |
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198 throw OrthancException(ErrorCode_BadFileFormat); |
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199 } |
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200 } |
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201 else |
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202 { |
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203 // No buffer is available |
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204 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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205 } |
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206 } |
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207 |
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208 |
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209 void IDicomTranscoder::DicomImage::Serialize() |
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210 { |
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211 if (parsed_.get() == NULL || |
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212 buffer_.get() != NULL || |
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213 isExternalBuffer_) |
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214 { |
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215 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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216 } |
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217 else if (parsed_->getDataset() == NULL) |
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218 { |
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219 throw OrthancException(ErrorCode_InternalError); |
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220 } |
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221 else |
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222 { |
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223 buffer_.reset(new std::string); |
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224 FromDcmtkBridge::SaveToMemoryBuffer(*buffer_, *parsed_->getDataset()); |
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225 } |
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226 } |
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227 |
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228 |
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229 IDicomTranscoder::DicomImage::DicomImage() : |
4200 | 230 isExternalBuffer_(false), |
231 externalBuffer_(NULL), | |
232 externalSize_(0) | |
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233 { |
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234 } |
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235 |
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236 |
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237 void IDicomTranscoder::DicomImage::Clear() |
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238 { |
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239 parsed_.reset(NULL); |
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240 buffer_.reset(NULL); |
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241 isExternalBuffer_ = false; |
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242 } |
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243 |
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244 |
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245 void IDicomTranscoder::DicomImage::AcquireParsed(ParsedDicomFile& parsed) |
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246 { |
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247 AcquireParsed(parsed.ReleaseDcmtkObject()); |
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248 } |
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249 |
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250 |
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251 void IDicomTranscoder::DicomImage::AcquireParsed(DcmFileFormat* parsed) |
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252 { |
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253 if (parsed == NULL) |
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254 { |
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255 throw OrthancException(ErrorCode_NullPointer); |
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256 } |
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257 else if (parsed->getDataset() == NULL) |
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258 { |
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259 throw OrthancException(ErrorCode_InternalError); |
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260 } |
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261 else if (parsed_.get() != NULL) |
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262 { |
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263 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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264 } |
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265 else |
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266 { |
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267 parsed_.reset(parsed); |
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268 } |
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269 } |
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270 |
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271 |
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272 void IDicomTranscoder::DicomImage::AcquireParsed(DicomImage& other) |
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273 { |
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274 AcquireParsed(other.ReleaseParsed()); |
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275 } |
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276 |
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277 |
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278 void IDicomTranscoder::DicomImage::AcquireBuffer(std::string& buffer /* will be swapped */) |
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279 { |
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280 if (buffer_.get() != NULL || |
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281 isExternalBuffer_) |
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282 { |
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283 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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284 } |
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285 else |
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286 { |
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287 buffer_.reset(new std::string); |
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288 buffer_->swap(buffer); |
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289 } |
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290 } |
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291 |
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292 |
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293 void IDicomTranscoder::DicomImage::AcquireBuffer(DicomImage& other) |
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294 { |
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295 if (buffer_.get() != NULL || |
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296 isExternalBuffer_) |
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297 { |
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298 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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299 } |
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300 else if (other.isExternalBuffer_) |
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301 { |
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302 assert(other.buffer_.get() == NULL); |
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303 isExternalBuffer_ = true; |
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304 externalBuffer_ = other.externalBuffer_; |
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305 externalSize_ = other.externalSize_; |
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306 } |
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307 else if (other.buffer_.get() != NULL) |
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308 { |
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309 buffer_.reset(other.buffer_.release()); |
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310 } |
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311 else |
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312 { |
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313 buffer_.reset(NULL); |
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314 } |
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315 } |
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316 |
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317 |
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318 void IDicomTranscoder::DicomImage::SetExternalBuffer(const void* buffer, |
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319 size_t size) |
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320 { |
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321 if (buffer_.get() != NULL || |
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322 isExternalBuffer_) |
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323 { |
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324 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
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325 } |
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326 else |
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327 { |
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328 isExternalBuffer_ = true; |
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329 externalBuffer_ = buffer; |
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330 externalSize_ = size; |
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331 } |
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332 } |
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333 |
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334 |
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335 void IDicomTranscoder::DicomImage::SetExternalBuffer(const std::string& buffer) |
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336 { |
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337 SetExternalBuffer(buffer.empty() ? NULL : buffer.c_str(), buffer.size()); |
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338 } |
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339 |
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340 |
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341 DcmFileFormat& IDicomTranscoder::DicomImage::GetParsed() |
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342 { |
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343 if (parsed_.get() != NULL) |
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344 { |
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345 return *parsed_; |
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346 } |
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347 else if (buffer_.get() != NULL || |
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348 isExternalBuffer_) |
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349 { |
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350 Parse(); |
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351 return *parsed_; |
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352 } |
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353 else |
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354 { |
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355 throw OrthancException( |
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356 ErrorCode_BadSequenceOfCalls, |
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357 "AcquireParsed(), AcquireBuffer() or SetExternalBuffer() should have been called"); |
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358 } |
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359 } |
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360 |
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361 |
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362 DcmFileFormat* IDicomTranscoder::DicomImage::ReleaseParsed() |
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363 { |
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364 if (parsed_.get() != NULL) |
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365 { |
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366 buffer_.reset(NULL); |
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367 return parsed_.release(); |
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368 } |
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369 else if (buffer_.get() != NULL || |
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370 isExternalBuffer_) |
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371 { |
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372 Parse(); |
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373 buffer_.reset(NULL); |
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374 return parsed_.release(); |
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375 } |
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376 else |
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377 { |
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378 throw OrthancException( |
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379 ErrorCode_BadSequenceOfCalls, |
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380 "AcquireParsed(), AcquireBuffer() or SetExternalBuffer() should have been called"); |
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381 } |
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382 } |
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383 |
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384 |
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385 ParsedDicomFile* IDicomTranscoder::DicomImage::ReleaseAsParsedDicomFile() |
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386 { |
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387 return ParsedDicomFile::AcquireDcmtkObject(ReleaseParsed()); |
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388 } |
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389 |
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390 |
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391 const void* IDicomTranscoder::DicomImage::GetBufferData() |
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392 { |
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393 if (isExternalBuffer_) |
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394 { |
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395 assert(buffer_.get() == NULL); |
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396 return externalBuffer_; |
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397 } |
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398 else |
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399 { |
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400 if (buffer_.get() == NULL) |
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401 { |
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402 Serialize(); |
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403 } |
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404 |
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405 assert(buffer_.get() != NULL); |
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406 return buffer_->empty() ? NULL : buffer_->c_str(); |
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407 } |
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408 } |
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409 |
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410 |
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411 size_t IDicomTranscoder::DicomImage::GetBufferSize() |
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412 { |
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413 if (isExternalBuffer_) |
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414 { |
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415 assert(buffer_.get() == NULL); |
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416 return externalSize_; |
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417 } |
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418 else |
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419 { |
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420 if (buffer_.get() == NULL) |
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421 { |
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422 Serialize(); |
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423 } |
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424 |
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425 assert(buffer_.get() != NULL); |
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426 return buffer_->size(); |
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427 } |
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428 } |
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429 } |