Mercurial > hg > orthanc

annotate OrthancServer/OrthancRestApi/OrthancRestArchive.cpp @ 807:566a2fb3c1fb

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update/delete modalities
author Sebastien Jodogne <s.jodogne@gmail.com>
date Wed, 07 May 2014 15:54:23 +0200
parents 5197fd35333c
children a811bdf8b8eb
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2014 Medical Physics Department, CHU of Liege,
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4 * Belgium
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5 *
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6 * This program is free software: you can redistribute it and/or
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7 * modify it under the terms of the GNU General Public License as
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8 * published by the Free Software Foundation, either version 3 of the
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9 * License, or (at your option) any later version.
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10 *
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11 * In addition, as a special exception, the copyright holders of this
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12 * program give permission to link the code of its release with the
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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14 * that use the same license as the "OpenSSL" library), and distribute
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15 * the linked executables. You must obey the GNU General Public License
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16 * in all respects for all of the code used other than "OpenSSL". If you
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17 * modify file(s) with this exception, you may extend this exception to
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18 * your version of the file(s), but you are not obligated to do so. If
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19 * you do not wish to do so, delete this exception statement from your
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20 * version. If you delete this exception statement from all source files
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21 * in the program, then also delete it here.
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22 *
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23 * This program is distributed in the hope that it will be useful, but
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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26 * General Public License for more details.
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27 *
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28 * You should have received a copy of the GNU General Public License
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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30 **/
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31
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32
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33 #include "OrthancRestApi.h"
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34
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35 #include "../../Core/Compression/HierarchicalZipWriter.h"
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36 #include "../../Core/HttpServer/FilesystemHttpSender.h"
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37 #include "../../Core/Uuid.h"
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38
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39 #include <glog/logging.h>
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40
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41 #if defined(_MSC_VER)
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42 #define snprintf _snprintf
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43 #endif
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44
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45 static const uint64_t MEGA_BYTES = 1024 * 1024;
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46 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024;
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47
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48 namespace Orthanc
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49 {
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50 // Download of ZIP files ----------------------------------------------------
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51
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52 static std::string GetDirectoryNameInArchive(const Json::Value& resource,
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53 ResourceType resourceType)
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54 {
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55 switch (resourceType)
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56 {
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57 case ResourceType_Patient:
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58 {
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59 std::string p = resource["MainDicomTags"]["PatientID"].asString();
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60 std::string n = resource["MainDicomTags"]["PatientName"].asString();
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61 return p + " " + n;
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62 }
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63
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64 case ResourceType_Study:
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65 {
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66 return resource["MainDicomTags"]["StudyDescription"].asString();
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67 }
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68
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69 case ResourceType_Series:
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70 {
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71 std::string d = resource["MainDicomTags"]["SeriesDescription"].asString();
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72 std::string m = resource["MainDicomTags"]["Modality"].asString();
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73 return m + " " + d;
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74 }
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75
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76 default:
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77 throw OrthancException(ErrorCode_InternalError);
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78 }
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79 }
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80
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81 static bool CreateRootDirectoryInArchive(HierarchicalZipWriter& writer,
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82 ServerContext& context,
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83 const Json::Value& resource,
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84 ResourceType resourceType)
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85 {
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86 if (resourceType == ResourceType_Patient)
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87 {
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88 return true;
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89 }
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90
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91 ResourceType parentType = GetParentResourceType(resourceType);
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92 Json::Value parent;
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93
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94 switch (resourceType)
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95 {
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96 case ResourceType_Study:
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97 {
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98 if (!context.GetIndex().LookupResource(parent, resource["ParentPatient"].asString(), parentType))
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99 {
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100 return false;
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101 }
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102
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103 break;
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104 }
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105
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106 case ResourceType_Series:
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107 if (!context.GetIndex().LookupResource(parent, resource["ParentStudy"].asString(), parentType) ||
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108 !CreateRootDirectoryInArchive(writer, context, parent, parentType))
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109 {
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110 return false;
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111 }
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112 break;
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113
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114 default:
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115 throw OrthancException(ErrorCode_NotImplemented);
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116 }
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117
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118 writer.OpenDirectory(GetDirectoryNameInArchive(parent, parentType).c_str());
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119 return true;
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120 }
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121
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122 static bool ArchiveInstance(HierarchicalZipWriter& writer,
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123 ServerContext& context,
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124 const std::string& instancePublicId,
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125 const char* filename)
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126 {
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127 Json::Value instance;
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128
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129 if (!context.GetIndex().LookupResource(instance, instancePublicId, ResourceType_Instance))
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130 {
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131 return false;
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132 }
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133
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134 writer.OpenFile(filename);
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135
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136 std::string dicom;
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137 context.ReadFile(dicom, instancePublicId, FileContentType_Dicom);
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138 writer.Write(dicom);
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139
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140 return true;
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141 }
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parents:
diff changeset
142
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diff changeset
143 static bool ArchiveInternal(HierarchicalZipWriter& writer,
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diff changeset
144 ServerContext& context,
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diff changeset
145 const std::string& publicId,
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parents:
diff changeset
146 ResourceType resourceType,
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parents:
diff changeset
147 bool isFirstLevel)
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parents:
diff changeset
148 {
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parents:
diff changeset
149 Json::Value resource;
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parents:
diff changeset
150 if (!context.GetIndex().LookupResource(resource, publicId, resourceType))
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parents:
diff changeset
151 {
5197fd35333c refactoring of OrthancRestApi
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diff changeset
152 return false;
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parents:
diff changeset
153 }
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parents:
diff changeset
154
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
155 if (isFirstLevel &&
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
156 !CreateRootDirectoryInArchive(writer, context, resource, resourceType))
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diff changeset
157 {
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diff changeset
158 return false;
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diff changeset
159 }
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
160
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diff changeset
161 writer.OpenDirectory(GetDirectoryNameInArchive(resource, resourceType).c_str());
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162
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parents:
diff changeset
163 switch (resourceType)
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164 {
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diff changeset
165 case ResourceType_Patient:
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diff changeset
166 for (Json::Value::ArrayIndex i = 0; i < resource["Studies"].size(); i++)
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167 {
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diff changeset
168 std::string studyId = resource["Studies"][i].asString();
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diff changeset
169 if (!ArchiveInternal(writer, context, studyId, ResourceType_Study, false))
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170 {
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171 return false;
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172 }
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173 }
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diff changeset
174 break;
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175
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176 case ResourceType_Study:
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177 for (Json::Value::ArrayIndex i = 0; i < resource["Series"].size(); i++)
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178 {
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179 std::string seriesId = resource["Series"][i].asString();
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180 if (!ArchiveInternal(writer, context, seriesId, ResourceType_Series, false))
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diff changeset
181 {
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182 return false;
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183 }
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184 }
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185 break;
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186
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187 case ResourceType_Series:
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188 {
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189 // Create a filename prefix, depending on the modality
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190 char format[16] = "%08d";
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191
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diff changeset
192 if (resource["MainDicomTags"].isMember("Modality"))
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193 {
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diff changeset
194 std::string modality = resource["MainDicomTags"]["Modality"].asString();
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195
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196 if (modality.size() == 1)
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diff changeset
197 {
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diff changeset
198 snprintf(format, sizeof(format) - 1, "%c%%07d", toupper(modality[0]));
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199 }
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parents:
diff changeset
200 else if (modality.size() >= 2)
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parents:
diff changeset
201 {
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parents:
diff changeset
202 snprintf(format, sizeof(format) - 1, "%c%c%%06d", toupper(modality[0]), toupper(modality[1]));
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diff changeset
203 }
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parents:
diff changeset
204 }
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parents:
diff changeset
205
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parents:
diff changeset
206 char filename[16];
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parents:
diff changeset
207
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diff changeset
208 for (Json::Value::ArrayIndex i = 0; i < resource["Instances"].size(); i++)
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
209 {
5197fd35333c refactoring of OrthancRestApi
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diff changeset
210 snprintf(filename, sizeof(filename) - 1, format, i);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
211
5197fd35333c refactoring of OrthancRestApi
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diff changeset
212 std::string publicId = resource["Instances"][i].asString();
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
213
5197fd35333c refactoring of OrthancRestApi
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diff changeset
214 // This was the implementation up to Orthanc 0.7.0:
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parents:
diff changeset
215 // std::string filename = instance["MainDicomTags"]["SOPInstanceUID"].asString() + ".dcm";
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
216
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
217 if (!ArchiveInstance(writer, context, publicId, filename))
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
218 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
219 return false;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
220 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
221 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
222
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
223 break;
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
224 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
225
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
226 default:
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
227 throw OrthancException(ErrorCode_InternalError);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
228 }
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
229
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
230 writer.CloseDirectory();
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
231 return true;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
232 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
233
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234 template <enum ResourceType resourceType>
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
235 static void GetArchive(RestApi::GetCall& call)
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
237 ServerContext& context = OrthancRestApi::GetContext(call);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
238
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
239 std::string id = call.GetUriComponent("id", "");
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
240
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
241 /**
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
242 * Determine whether ZIP64 is required. Original ZIP format can
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 * store up to 2GB of data (some implementation supporting up to
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 * 4GB of data), and up to 65535 files.
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
245 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
246 **/
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
247
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
248 uint64_t uncompressedSize;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
249 uint64_t compressedSize;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
250 unsigned int countStudies;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
251 unsigned int countSeries;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
252 unsigned int countInstances;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
253 context.GetIndex().GetStatistics(compressedSize, uncompressedSize,
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
254 countStudies, countSeries, countInstances, id);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
255 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES ||
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 countInstances >= 65535);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
258 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size "
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
259 << (uncompressedSize / MEGA_BYTES) << "MB using the "
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
260 << (isZip64 ? "ZIP64" : "ZIP32") << " file format";
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
261
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
262 // Create a RAII for the temporary file to manage the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
263 Toolbox::TemporaryFile tmp;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
264
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
265 {
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 // Create a ZIP writer
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
267 HierarchicalZipWriter writer(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
268 writer.SetZip64(isZip64);
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
269
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
270 // Store the requested resource into the ZIP
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
271 if (!ArchiveInternal(writer, context, id, resourceType, true))
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
272 {
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
273 return;
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
274 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
275 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
276
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
277 // Prepare the sending of the ZIP file
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
278 FilesystemHttpSender sender(tmp.GetPath().c_str());
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
279 sender.SetContentType("application/zip");
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
280 sender.SetDownloadFilename(id + ".zip");
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
282 // Send the ZIP
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
283 call.GetOutput().AnswerFile(sender);
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
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285 // The temporary file is automatically removed thanks to the RAII
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286 }
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287
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288
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289 void OrthancRestApi::RegisterArchive()
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290 {
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291 Register("/patients/{id}/archive", GetArchive<ResourceType_Patient>);
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292 Register("/studies/{id}/archive", GetArchive<ResourceType_Study>);
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293 Register("/series/{id}/archive", GetArchive<ResourceType_Series>);
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294 }
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295 }