Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerContext.cpp @ 5712:52771e1a8072 find-refactoring-clean
removed ServerContext::ExpandResource()
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 12 Jul 2024 19:05:16 +0200 |
parents | c8d21a09aae6 |
children | 593e110de3d8 |
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224 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2024-2024 Orthanc Team SRL, Belgium |
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7 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
224 | 8 * |
9 * This program is free software: you can redistribute it and/or | |
10 * modify it under the terms of the GNU General Public License as | |
11 * published by the Free Software Foundation, either version 3 of the | |
12 * License, or (at your option) any later version. | |
13 * | |
14 * This program is distributed in the hope that it will be useful, but | |
15 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
16 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
17 * General Public License for more details. | |
18 * | |
19 * You should have received a copy of the GNU General Public License | |
20 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
21 **/ | |
22 | |
23 | |
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24 #include "PrecompiledHeadersServer.h" |
224 | 25 #include "ServerContext.h" |
26 | |
4045 | 27 #include "../../OrthancFramework/Sources/Cache/SharedArchive.h" |
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28 #include "../../OrthancFramework/Sources/DicomFormat/DicomElement.h" |
4499 | 29 #include "../../OrthancFramework/Sources/DicomFormat/DicomStreamReader.h" |
4045 | 30 #include "../../OrthancFramework/Sources/DicomParsing/DcmtkTranscoder.h" |
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31 #include "../../OrthancFramework/Sources/DicomParsing/DicomModification.h" |
4045 | 32 #include "../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" |
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33 #include "../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" |
4045 | 34 #include "../../OrthancFramework/Sources/FileStorage/StorageAccessor.h" |
35 #include "../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h" | |
36 #include "../../OrthancFramework/Sources/HttpServer/HttpStreamTranscoder.h" | |
37 #include "../../OrthancFramework/Sources/JobsEngine/SetOfInstancesJob.h" | |
38 #include "../../OrthancFramework/Sources/Logging.h" | |
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39 #include "../../OrthancFramework/Sources/MallocMemoryBuffer.h" |
4045 | 40 #include "../../OrthancFramework/Sources/MetricsRegistry.h" |
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41 #include "../Plugins/Engine/OrthancPlugins.h" |
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42 |
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43 #include "OrthancConfiguration.h" |
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44 #include "OrthancRestApi/OrthancRestApi.h" |
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45 #include "ResourceFinder.h" |
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46 #include "Search/DatabaseLookup.h" |
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47 #include "ServerJobs/OrthancJobUnserializer.h" |
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48 #include "ServerToolbox.h" |
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49 #include "StorageCommitmentReports.h" |
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50 |
794 | 51 #include <dcmtk/dcmdata/dcfilefo.h> |
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52 #include <dcmtk/dcmnet/dimse.h> |
5160 | 53 |
54 #if HAVE_MALLOC_TRIM == 1 | |
55 # include <malloc.h> | |
56 #endif | |
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57 |
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58 static size_t DICOM_CACHE_SIZE = 128 * 1024 * 1024; // 128 MB |
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59 |
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60 |
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61 /** |
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62 * IMPORTANT: We make the assumption that the same instance of |
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63 * FileStorage can be accessed from multiple threads. This seems OK |
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64 * since the filesystem implements the required locking mechanisms, |
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65 * but maybe a read-writer lock on the "FileStorage" could be |
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66 * useful. Conversely, "ServerIndex" already implements mutex-based |
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67 * locking. |
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68 **/ |
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69 |
224 | 70 namespace Orthanc |
71 { | |
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72 static bool IsUncompressedTransferSyntax(DicomTransferSyntax transferSyntax) |
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73 { |
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74 return (transferSyntax == DicomTransferSyntax_LittleEndianImplicit || |
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75 transferSyntax == DicomTransferSyntax_LittleEndianExplicit || |
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76 transferSyntax == DicomTransferSyntax_BigEndianExplicit); |
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77 } |
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78 |
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79 |
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80 static bool IsTranscodableTransferSyntax(DicomTransferSyntax transferSyntax) |
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81 { |
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82 return ( |
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83 // Do not try to transcode DICOM videos (new in Orthanc 1.8.2) |
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84 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtMainLevel && |
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85 transferSyntax != DicomTransferSyntax_MPEG2MainProfileAtHighLevel && |
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86 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_1 && |
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87 transferSyntax != DicomTransferSyntax_MPEG4BDcompatibleHighProfileLevel4_1 && |
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88 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For2DVideo && |
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89 transferSyntax != DicomTransferSyntax_MPEG4HighProfileLevel4_2_For3DVideo && |
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90 transferSyntax != DicomTransferSyntax_MPEG4StereoHighProfileLevel4_2 && |
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91 transferSyntax != DicomTransferSyntax_HEVCMainProfileLevel5_1 && |
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92 transferSyntax != DicomTransferSyntax_HEVCMain10ProfileLevel5_1 && |
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93 |
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94 // Do not try to transcode special transfer syntaxes |
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95 transferSyntax != DicomTransferSyntax_RFC2557MimeEncapsulation && |
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96 transferSyntax != DicomTransferSyntax_XML); |
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97 } |
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98 |
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99 |
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100 ServerContext::StoreResult::StoreResult() : |
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101 status_(StoreStatus_Failure), |
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102 cstoreStatusCode_(0) |
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103 { |
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104 } |
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105 |
5182 | 106 |
107 #if HAVE_MALLOC_TRIM == 1 | |
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108 void ServerContext::MemoryTrimmingThread(ServerContext* that, |
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109 unsigned int intervalInSeconds) |
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110 { |
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111 Logging::SetCurrentThreadName("MEMORY-TRIM"); |
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112 |
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113 boost::posix_time::ptime lastExecution = boost::posix_time::second_clock::universal_time(); |
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114 |
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115 // This thread is started only if malloc_trim is defined |
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116 while (!that->done_) |
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117 { |
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118 boost::posix_time::ptime now = boost::posix_time::second_clock::universal_time(); |
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119 boost::posix_time::time_duration elapsed = now - lastExecution; |
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120 |
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121 if (elapsed.total_seconds() > intervalInSeconds) |
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122 { |
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123 // If possible, gives memory back to the system |
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124 // (see OrthancServer/Resources/ImplementationNotes/memory_consumption.txt) |
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125 { |
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126 MetricsRegistry::Timer timer(that->GetMetricsRegistry(), "orthanc_memory_trimming_duration_ms"); |
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127 malloc_trim(128*1024); |
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128 } |
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129 lastExecution = boost::posix_time::second_clock::universal_time(); |
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130 } |
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131 |
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132 boost::this_thread::sleep(boost::posix_time::milliseconds(100)); |
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133 } |
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134 } |
5182 | 135 #endif |
136 | |
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137 |
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138 void ServerContext::ChangeThread(ServerContext* that, |
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139 unsigned int sleepDelay) |
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140 { |
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141 Logging::SetCurrentThreadName("CHANGES"); |
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142 |
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143 while (!that->done_) |
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144 { |
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145 std::unique_ptr<IDynamicObject> obj(that->pendingChanges_.Dequeue(sleepDelay)); |
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146 |
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147 if (obj.get() != NULL) |
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148 { |
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149 const ServerIndexChange& change = dynamic_cast<const ServerIndexChange&>(*obj.get()); |
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150 |
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151 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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152 for (ServerListeners::iterator it = that->listeners_.begin(); |
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153 it != that->listeners_.end(); ++it) |
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154 { |
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155 try |
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156 { |
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157 try |
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158 { |
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159 it->GetListener().SignalChange(change); |
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160 } |
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161 catch (std::bad_alloc&) |
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162 { |
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163 LOG(ERROR) << "Not enough memory while signaling a change"; |
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164 } |
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165 catch (...) |
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166 { |
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167 throw OrthancException(ErrorCode_InternalError, "Error while signaling a change"); |
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168 } |
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169 } |
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170 catch (OrthancException& e) |
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171 { |
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172 LOG(ERROR) << "Error in the " << it->GetDescription() |
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173 << " callback while signaling a change: " << e.What() |
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174 << " (code " << e.GetErrorCode() << ")"; |
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175 } |
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176 } |
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177 } |
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178 } |
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179 } |
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180 |
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181 |
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182 void ServerContext::JobEventsThread(ServerContext* that, |
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183 unsigned int sleepDelay) |
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184 { |
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185 Logging::SetCurrentThreadName("JOB-EVENTS"); |
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186 |
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187 while (!that->done_) |
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188 { |
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189 std::unique_ptr<IDynamicObject> obj(that->pendingJobEvents_.Dequeue(sleepDelay)); |
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190 |
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191 if (obj.get() != NULL) |
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192 { |
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193 const JobEvent& event = dynamic_cast<const JobEvent&>(*obj.get()); |
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194 |
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195 boost::shared_lock<boost::shared_mutex> lock(that->listenersMutex_); |
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196 for (ServerListeners::iterator it = that->listeners_.begin(); |
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197 it != that->listeners_.end(); ++it) |
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198 { |
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199 try |
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200 { |
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201 try |
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202 { |
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203 it->GetListener().SignalJobEvent(event); |
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204 } |
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205 catch (std::bad_alloc&) |
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206 { |
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207 LOG(ERROR) << "Not enough memory while signaling a job event"; |
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208 } |
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209 catch (...) |
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210 { |
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211 throw OrthancException(ErrorCode_InternalError, "Error while signaling a job event"); |
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212 } |
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213 } |
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214 catch (OrthancException& e) |
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215 { |
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216 LOG(ERROR) << "Error in the " << it->GetDescription() |
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217 << " callback while signaling a job event: " << e.What() |
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218 << " (code " << e.GetErrorCode() << ")"; |
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219 } |
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220 } |
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221 } |
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222 } |
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223 } |
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224 |
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225 |
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226 void ServerContext::SaveJobsThread(ServerContext* that, |
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227 unsigned int sleepDelay) |
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228 { |
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229 Logging::SetCurrentThreadName("SAVE-JOBS"); |
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230 |
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231 static const boost::posix_time::time_duration PERIODICITY = |
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232 boost::posix_time::seconds(10); |
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233 |
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234 boost::posix_time::ptime next = |
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235 boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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236 |
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237 while (!that->done_) |
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238 { |
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239 boost::this_thread::sleep(boost::posix_time::milliseconds(sleepDelay)); |
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240 |
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241 if (that->haveJobsChanged_ || |
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242 boost::posix_time::microsec_clock::universal_time() >= next) |
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243 { |
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244 that->haveJobsChanged_ = false; |
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245 that->SaveJobsEngine(); |
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246 next = boost::posix_time::microsec_clock::universal_time() + PERIODICITY; |
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247 } |
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248 } |
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249 } |
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250 |
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251 |
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252 void ServerContext::SignalJobSubmitted(const std::string& jobId) |
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253 { |
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254 haveJobsChanged_ = true; |
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255 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Submitted, jobId)); |
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256 } |
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257 |
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258 |
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259 void ServerContext::SignalJobSuccess(const std::string& jobId) |
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260 { |
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261 haveJobsChanged_ = true; |
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262 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Success, jobId)); |
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263 } |
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264 |
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265 |
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266 void ServerContext::SignalJobFailure(const std::string& jobId) |
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267 { |
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268 haveJobsChanged_ = true; |
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269 pendingJobEvents_.Enqueue(new JobEvent(JobEventType_Failure, jobId)); |
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270 } |
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271 |
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272 |
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273 void ServerContext::SetupJobsEngine(bool unitTesting, |
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274 bool loadJobsFromDatabase) |
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275 { |
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276 if (loadJobsFromDatabase) |
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277 { |
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278 std::string serialized; |
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279 if (index_.LookupGlobalProperty(serialized, GlobalProperty_JobsRegistry, false /* not shared */)) |
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280 { |
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281 LOG(WARNING) << "Reloading the jobs from the last execution of Orthanc"; |
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282 |
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283 try |
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284 { |
4205 | 285 OrthancJobUnserializer unserializer(*this); |
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286 jobsEngine_.LoadRegistryFromString(unserializer, serialized); |
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287 } |
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288 catch (OrthancException& e) |
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289 { |
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290 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: " << e.What(); |
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291 } |
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292 catch (const std::string& s) |
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293 { |
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294 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway: \"" << s << "\""; |
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295 } |
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296 catch (...) |
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297 { |
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298 LOG(WARNING) << "Cannot unserialize the jobs engine, starting anyway"; |
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299 } |
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300 } |
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301 else |
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302 { |
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303 LOG(INFO) << "The last execution of Orthanc has archived no job"; |
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304 } |
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305 } |
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306 else |
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307 { |
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308 LOG(INFO) << "Not reloading the jobs from the last execution of Orthanc"; |
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309 } |
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310 |
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311 jobsEngine_.GetRegistry().SetObserver(*this); |
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312 jobsEngine_.Start(); |
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313 isJobsEngineUnserialized_ = true; |
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314 |
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315 saveJobsThread_ = boost::thread(SaveJobsThread, this, (unitTesting ? 20 : 100)); |
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316 } |
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317 |
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318 |
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319 void ServerContext::SaveJobsEngine() |
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320 { |
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321 if (saveJobs_) |
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322 { |
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323 LOG(TRACE) << "Serializing the content of the jobs engine"; |
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324 |
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325 try |
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326 { |
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327 Json::Value value; |
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328 jobsEngine_.GetRegistry().Serialize(value); |
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329 |
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330 std::string serialized; |
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331 Toolbox::WriteFastJson(serialized, value); |
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332 |
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333 index_.SetGlobalProperty(GlobalProperty_JobsRegistry, false /* not shared */, serialized); |
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334 } |
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335 catch (OrthancException& e) |
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336 { |
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337 LOG(ERROR) << "Cannot serialize the jobs engine: " << e.What(); |
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338 } |
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339 } |
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340 } |
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341 |
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342 |
5431 | 343 void ServerContext::PublishCacheMetrics() |
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344 { |
5431 | 345 metricsRegistry_->SetFloatValue("orthanc_dicom_cache_size_mb", |
5337
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346 static_cast<float>(dicomCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); |
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347 metricsRegistry_->SetIntegerValue("orthanc_dicom_cache_count", dicomCache_.GetNumberOfItems()); |
5431 | 348 |
349 metricsRegistry_->SetFloatValue("orthanc_storage_cache_size_mb", | |
350 static_cast<float>(storageCache_.GetCurrentSize()) / static_cast<float>(1024 * 1024)); | |
351 metricsRegistry_->SetIntegerValue("orthanc_storage_cache_count", storageCache_.GetNumberOfItems()); | |
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352 } |
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353 |
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354 |
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355 ServerContext::ServerContext(IDatabaseWrapper& database, |
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356 IStorageArea& area, |
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357 bool unitTesting, |
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358 size_t maxCompletedJobs) : |
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359 index_(*this, database, (unitTesting ? 20 : 500)), |
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360 area_(area), |
656 | 361 compressionEnabled_(false), |
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362 storeMD5_(true), |
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363 largeDicomThrottler_(1), |
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364 dicomCache_(DICOM_CACHE_SIZE), |
2738
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365 mainLua_(*this), |
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366 filterLua_(*this), |
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367 luaListener_(*this), |
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368 jobsEngine_(maxCompletedJobs), |
2136
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369 #if ORTHANC_ENABLE_PLUGINS == 1 |
1232
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370 plugins_(NULL), |
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371 #endif |
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372 done_(false), |
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373 haveJobsChanged_(false), |
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primitives to collect metrics in Orthanc
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374 isJobsEngineUnserialized_(false), |
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create a default user if none is provided, while issuing a warning in Orthanc Explorer
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375 metricsRegistry_(new MetricsRegistry), |
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display a security warning in the logs at startup when ExecuteLuaEnabled is true
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376 isHttpServerSecure_(true), |
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moving SetOverwriteInstances from ServerIndex to ServerContext
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377 isExecuteLuaEnabled_(false), |
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378 isRestApiWriteToFileSystemEnabled_(false), |
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379 overwriteInstances_(false), |
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380 dcmtkTranscoder_(new DcmtkTranscoder), |
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381 isIngestTranscoding_(false), |
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382 ingestTranscodingOfUncompressed_(true), |
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383 ingestTranscodingOfCompressed_(true), |
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384 preferredTransferSyntax_(DicomTransferSyntax_LittleEndianExplicit), |
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/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
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385 deidentifyLogs_(false), |
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386 serverStartTimeUtc_(boost::posix_time::second_clock::universal_time()) |
224 | 387 { |
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388 try |
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389 { |
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390 unsigned int lossyQuality; |
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391 |
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392 { |
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393 OrthancConfiguration::ReaderLock lock; |
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MediaArchiveSize configuration option
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394 |
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395 queryRetrieveArchive_.reset( |
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396 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("QueryRetrieveSize", 100))); |
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397 mediaArchive_.reset( |
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398 new SharedArchive(lock.GetConfiguration().GetUnsignedIntegerParameter("MediaArchiveSize", 1))); |
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Add missing tag "Retrieve AE Title (0008,0054)" in C-FIND SCP responses
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399 defaultLocalAet_ = lock.GetConfiguration().GetOrthancAET(); |
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400 jobsEngine_.SetWorkersCount(lock.GetConfiguration().GetUnsignedIntegerParameter("ConcurrentJobs", 2)); |
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401 saveJobs_ = lock.GetConfiguration().GetBooleanParameter("SaveJobs", true); |
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402 metricsRegistry_->SetEnabled(lock.GetConfiguration().GetBooleanParameter("MetricsEnabled", true)); |
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403 |
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404 // New configuration options in Orthanc 1.5.1 |
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405 findStorageAccessMode_ = StringToFindStorageAccessMode(lock.GetConfiguration().GetStringParameter("StorageAccessOnFind", "Always")); |
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406 limitFindInstances_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindInstances", 0); |
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407 limitFindResults_ = lock.GetConfiguration().GetUnsignedIntegerParameter("LimitFindResults", 0); |
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408 |
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409 // New configuration option in Orthanc 1.6.0 |
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|
410 storageCommitmentReports_.reset(new StorageCommitmentReports(lock.GetConfiguration().GetUnsignedIntegerParameter("StorageCommitmentReportsSize", 100))); |
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411 |
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412 // New options in Orthanc 1.7.0 |
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413 transcodeDicomProtocol_ = lock.GetConfiguration().GetBooleanParameter("TranscodeDicomProtocol", true); |
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|
414 builtinDecoderTranscoderOrder_ = StringToBuiltinDecoderTranscoderOrder(lock.GetConfiguration().GetStringParameter("BuiltinDecoderTranscoderOrder", "After")); |
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|
415 lossyQuality = lock.GetConfiguration().GetUnsignedIntegerParameter("DicomLossyTranscodingQuality", 90); |
3677
4182cde57afb
refactoring FindStorageAccessMode
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|
416 |
3939
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417 std::string s; |
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418 if (lock.GetConfiguration().LookupStringParameter(s, "IngestTranscoding")) |
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419 { |
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420 if (LookupTransferSyntax(ingestTransferSyntax_, s)) |
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421 { |
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422 isIngestTranscoding_ = true; |
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423 LOG(WARNING) << "Incoming DICOM instances will automatically be transcoded to " |
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|
424 << "transfer syntax: " << GetTransferSyntaxUid(ingestTransferSyntax_); |
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425 |
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|
426 // New options in Orthanc 1.8.2 |
4384
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|
427 ingestTranscodingOfUncompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfUncompressed", true); |
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|
428 ingestTranscodingOfCompressed_ = lock.GetConfiguration().GetBooleanParameter("IngestTranscodingOfCompressed", true); |
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429 |
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|
430 LOG(WARNING) << " Ingest transcoding will " |
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431 << (ingestTranscodingOfUncompressed_ ? "be applied" : "*not* be applied") |
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432 << " to uncompressed transfer syntaxes (Little Endian Implicit/Explicit, Big Endian Explicit)"; |
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433 |
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|
434 LOG(WARNING) << " Ingest transcoding will " |
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|
435 << (ingestTranscodingOfCompressed_ ? "be applied" : "*not* be applied") |
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|
436 << " to compressed transfer syntaxes"; |
3939
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437 } |
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438 else |
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439 { |
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440 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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441 "Unknown transfer syntax for ingest transcoding: " + s); |
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442 } |
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443 } |
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444 else |
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diff
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|
445 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
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|
446 isIngestTranscoding_ = false; |
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|
447 LOG(INFO) << "Automated transcoding of incoming DICOM instances is disabled"; |
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448 } |
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|
449 |
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|
450 // New options in Orthanc 1.8.2 |
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451 if (lock.GetConfiguration().GetBooleanParameter("DeidentifyLogs", true)) |
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452 { |
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453 deidentifyLogs_ = true; |
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|
454 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is enabled"; |
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|
455 |
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|
456 DicomVersion version = StringToDicomVersion( |
5334
5b2a5cc64cb1
upgraded anonymization to Basic Profile of PS 3.15-2023b Table E.1-1
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
457 lock.GetConfiguration().GetStringParameter("DeidentifyLogsDicomVersion", "2023b")); |
4375
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458 CLOG(INFO, DICOM) << "Version of DICOM standard used for deidentification is " |
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459 << EnumerationToString(version); |
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|
460 |
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|
461 logsDeidentifierRules_.SetupAnonymization(version); |
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462 } |
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|
463 else |
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|
464 { |
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465 deidentifyLogs_ = false; |
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|
466 CLOG(INFO, DICOM) << "Deidentification of log contents (notably for DIMSE queries) is disabled"; |
4375
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467 } |
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diff
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|
468 |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
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changeset
|
469 // New options in Orthanc 1.9.0 |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
470 if (lock.GetConfiguration().LookupStringParameter(s, "DicomScuPreferredTransferSyntax") && |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
471 !LookupTransferSyntax(preferredTransferSyntax_, s)) |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
472 { |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
473 throw OrthancException(ErrorCode_ParameterOutOfRange, |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
474 "Unknown preferred transfer syntax: " + s); |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
475 } |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
476 |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
477 CLOG(INFO, DICOM) << "Preferred transfer syntax for Orthanc C-STORE SCU: " |
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
478 << GetTransferSyntaxUid(preferredTransferSyntax_); |
4473
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
479 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
480 lock.GetConfiguration().GetAcceptedTransferSyntaxes(acceptedTransferSyntaxes_); |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
481 |
68f52897c119
new URIs: /tools/accepted-transfer-syntaxes and /tools/unknown-sop-class-accepted to replace Lua callbacks for transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4465
diff
changeset
|
482 isUnknownSopClassAccepted_ = lock.GetConfiguration().GetBooleanParameter("UnknownSopClassAccepted", false); |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
483 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
484 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
485 jobsEngine_.SetThreadSleep(unitTesting ? 20 : 200); |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
486 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
487 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
488 changeThread_ = boost::thread(ChangeThread, this, (unitTesting ? 20 : 100)); |
5410
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
489 jobEventsThread_ = boost::thread(JobEventsThread, this, (unitTesting ? 20 : 100)); |
5182 | 490 |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
491 #if HAVE_MALLOC_TRIM == 1 |
5346
566e8d32bd3a
Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents:
5337
diff
changeset
|
492 LOG(INFO) << "Starting memory trimming thread at 30 seconds interval"; |
566e8d32bd3a
Reduce the frequency of memory trimming from 100ms to 30s to avoid high idle CPU load
Alain Mazy <am@osimis.io>
parents:
5337
diff
changeset
|
493 memoryTrimmingThread_ = boost::thread(MemoryTrimmingThread, this, 30); |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
494 #else |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
495 LOG(INFO) << "Your platform does not support malloc_trim(), not starting the memory trimming thread"; |
5159
f5907aecbaed
conditional usage of malloc_trim
Alain Mazy <am@osimis.io>
parents:
5152
diff
changeset
|
496 #endif |
5182 | 497 |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
498 dynamic_cast<DcmtkTranscoder&>(*dcmtkTranscoder_).SetLossyQuality(lossyQuality); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
499 } |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
500 catch (OrthancException&) |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
501 { |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
502 Stop(); |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
503 throw; |
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
504 } |
224 | 505 } |
506 | |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
507 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
508 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
509 ServerContext::~ServerContext() |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
510 { |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
511 if (!done_) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
512 { |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
513 LOG(ERROR) << "INTERNAL ERROR: ServerContext::Stop() should be invoked manually to avoid mess in the destruction order!"; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
514 Stop(); |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
515 } |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
516 } |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
517 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
518 |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
519 void ServerContext::Stop() |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
520 { |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
521 if (!done_) |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
522 { |
1459 | 523 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
524 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 525 listeners_.clear(); |
526 } | |
527 | |
1447
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
528 done_ = true; |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
529 |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
530 if (changeThread_.joinable()) |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
531 { |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
532 changeThread_.join(); |
5ba7471780ae
refactoring: HttpToolbox, DumpJson in Lua
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1436
diff
changeset
|
533 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
534 |
5410
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
535 if (jobEventsThread_.joinable()) |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
536 { |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
537 jobEventsThread_.join(); |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
538 } |
16cbfefa15e9
Solved a deadlock related to the Job Engine events and plugins
Alain Mazy <am@osimis.io>
parents:
5346
diff
changeset
|
539 |
2672
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
540 if (saveJobsThread_.joinable()) |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
541 { |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
542 saveJobsThread_.join(); |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
543 } |
3efc44fac209
periodically saving jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2671
diff
changeset
|
544 |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
545 if (memoryTrimmingThread_.joinable()) |
5181
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
546 { |
5183
5ec3dcdf78b9
renamed HousekeeperThread as MemoryTrimmingThread to avoid confusion with Housekeeper plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5182
diff
changeset
|
547 memoryTrimmingThread_.join(); |
5181
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
548 } |
65b05b44ae4c
properly finalizing the housekeeper thread that periodically calls malloc_trim()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5176
diff
changeset
|
549 |
4024
1d2b31fc782f
new 'changes': JobSubmitted, JobSuccess, JobFailure
Alain Mazy <alain@mazy.be>
parents:
4022
diff
changeset
|
550 jobsEngine_.GetRegistry().ResetObserver(); |
2815
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
551 |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
552 if (isJobsEngineUnserialized_) |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
553 { |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
554 // Avoid losing jobs if the JobsRegistry cannot be unserialized |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
555 SaveJobsEngine(); |
925d8dc03a23
unserialization of jobs from plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2808
diff
changeset
|
556 } |
2668
d26dd081df97
saving jobs engine on exit
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2665
diff
changeset
|
557 |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
558 // Do not change the order below! |
2570
2e879c796ec7
JobsRegistry::SubmitAndWait(), StoreScuJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2507
diff
changeset
|
559 jobsEngine_.Stop(); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
560 index_.Stop(); |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
561 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
562 } |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
563 |
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
564 |
236 | 565 void ServerContext::SetCompressionEnabled(bool enabled) |
566 { | |
567 if (enabled) | |
568 LOG(WARNING) << "Disk compression is enabled"; | |
569 else | |
570 LOG(WARNING) << "Disk compression is disabled"; | |
571 | |
572 compressionEnabled_ = enabled; | |
573 } | |
574 | |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
575 |
1126
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
576 void ServerContext::RemoveFile(const std::string& fileUuid, |
bf67431a7383
handling of file content type in IStorageArea
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1124
diff
changeset
|
577 FileContentType type) |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
578 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
579 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
580 accessor.Remove(fileUuid, type); |
227
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
581 } |
209ca3f6db62
dicom-scu from rest
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
226
diff
changeset
|
582 |
996
cf52f3bcb2b3
clarification of Lua classes wrt multithreading
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
995
diff
changeset
|
583 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
584 ServerContext::StoreResult ServerContext::StoreAfterTranscoding(std::string& resultPublicId, |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
585 DicomInstanceToStore& dicom, |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
586 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
587 bool isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
588 { |
3814
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
589 bool overwrite; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
590 switch (mode) |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
591 { |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
592 case StoreInstanceMode_Default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
593 overwrite = overwriteInstances_; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
594 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
595 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
596 case StoreInstanceMode_OverwriteDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
597 overwrite = true; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
598 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
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parents:
3813
diff
changeset
|
599 |
023b2a9f3aa1
new enum: StoreInstanceMode
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parents:
3813
diff
changeset
|
600 case StoreInstanceMode_IgnoreDuplicate: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
601 overwrite = false; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
602 break; |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3813
diff
changeset
|
603 |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
604 default: |
023b2a9f3aa1
new enum: StoreInstanceMode
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
605 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4499 | 606 } |
607 | |
608 bool hasPixelDataOffset; | |
609 uint64_t pixelDataOffset; | |
5316
03501a258d9e
added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5296
diff
changeset
|
610 ValueRepresentation pixelDataVR; |
4499 | 611 hasPixelDataOffset = DicomStreamReader::LookupPixelDataOffset( |
5316
03501a258d9e
added instance metadata "PixelDataVR"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5296
diff
changeset
|
612 pixelDataOffset, pixelDataVR, dicom.GetBufferData(), dicom.GetBufferSize()); |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
613 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
614 DicomTransferSyntax transferSyntax; |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
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parents:
4505
diff
changeset
|
615 bool hasTransferSyntax = dicom.LookupTransferSyntax(transferSyntax); |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
616 |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
617 DicomMap summary; |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
618 dicom.GetSummary(summary); // -> from Orthanc 1.11.1, this includes the leaf nodes and sequences |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
619 |
5176 | 620 std::set<DicomTag> allMainDicomTags; |
621 DicomMap::GetAllMainDicomTags(allMainDicomTags); | |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
622 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
623 try |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
624 { |
3175
574890d14c92
new metrics: orthanc_store_dicom_duration_ms, orthanc_storage_[create|read|remove]_duration_ms
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3174
diff
changeset
|
625 MetricsRegistry::Timer timer(GetMetricsRegistry(), "orthanc_store_dicom_duration_ms"); |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
626 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
627 |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
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parents:
4506
diff
changeset
|
628 DicomInstanceHasher hasher(summary); |
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
629 resultPublicId = hasher.HashInstance(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
630 |
5044
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
631 Json::Value dicomAsJson; |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
parents:
5043
diff
changeset
|
632 dicom.GetDicomAsJson(dicomAsJson, allMainDicomTags); // don't crop any main dicom tags |
5036
877bc3b96476
Handle Dicom sequences in ExtraMainDicomTags and save them in the 'MainDicomSequences' metadata
Alain Mazy <am@osimis.io>
parents:
4994
diff
changeset
|
633 |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
634 Json::Value simplifiedTags; |
4504
7d1eabfac6e0
removed cached dicom-as-json from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4500
diff
changeset
|
635 Toolbox::SimplifyDicomAsJson(simplifiedTags, dicomAsJson, DicomToJsonFormat_Human); |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
636 |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
637 // Test if the instance must be filtered out |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
638 StoreResult result; |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
639 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
640 if (!isReconstruct) // skip all filters if this is a reconstruction |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
641 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
642 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
643 |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
644 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
645 { |
1453
c0bdc47165ef
code to warn about possible threading problems
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parents:
1447
diff
changeset
|
646 try |
1433
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refactoring: LuaScripting
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parents:
1427
diff
changeset
|
647 { |
1574
0c29ebe80ac9
give access to full request origin in ReceivedInstanceFilter (Lua)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1550
diff
changeset
|
648 if (!it->GetListener().FilterIncomingInstance(dicom, simplifiedTags)) |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
649 { |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
650 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
651 result.SetCStoreStatusCode(STATUS_Success); // to keep backward compatibility, we still return 'success' |
1453
c0bdc47165ef
code to warn about possible threading problems
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parents:
1447
diff
changeset
|
652 break; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
653 } |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
654 |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
655 if (dicom.GetOrigin().GetRequestOrigin() == Orthanc::RequestOrigin_DicomProtocol) |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
656 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
657 uint16_t filterResult = STATUS_Success; |
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
658 if (!it->GetListener().FilterIncomingCStoreInstance(filterResult, dicom, simplifiedTags)) |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
659 { |
4921
309fb4f02704
fix signature of OrthancPluginIncomingCStoreInstanceFilter
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4919
diff
changeset
|
660 // The instance is to be discarded |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
661 result.SetStatus(StoreStatus_FilteredOut); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
662 result.SetCStoreStatusCode(filterResult); |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
663 break; |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
664 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
665 } |
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
666 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
667 } |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
668 catch (OrthancException& e) |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
669 { |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
670 LOG(ERROR) << "Error in the " << it->GetDescription() |
2135
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
671 << " callback while receiving an instance: " << e.What() |
cadfe0a2a393
fix in the sample basic plugin
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2134
diff
changeset
|
672 << " (code " << e.GetErrorCode() << ")"; |
1453
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
673 throw; |
c0bdc47165ef
code to warn about possible threading problems
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1447
diff
changeset
|
674 } |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
675 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
676 } |
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
677 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
678 if (result.GetStatus() == StoreStatus_FilteredOut) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
679 { |
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
680 LOG(INFO) << "An incoming instance has been discarded by the filter"; |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
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diff
changeset
|
681 return result; |
1004
a226e0959d8b
DicomInstanceToStore
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parents:
1002
diff
changeset
|
682 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
683 |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
684 // Remove the file from the DicomCache (useful if |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
685 // "OverwriteInstances" is set to "true") |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
686 dicomCache_.Invalidate(resultPublicId); |
2825
8aa6aef11b70
New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2815
diff
changeset
|
687 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
688 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
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1548
diff
changeset
|
689 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
690 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
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1548
diff
changeset
|
691 FileInfo dicomInfo = accessor.Write(dicom.GetBufferData(), dicom.GetBufferSize(), |
e5e975e9b738
refactoring and simplification of StorageAccessor
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1548
diff
changeset
|
692 FileContentType_Dicom, compression, storeMD5_); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
693 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
694 ServerIndex::Attachments attachments; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
695 attachments.push_back(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
696 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
697 FileInfo dicomUntilPixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
698 if (hasPixelDataOffset && |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
699 (!area_.HasReadRange() || |
4519 | 700 compressionEnabled_)) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
701 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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4513
diff
changeset
|
702 dicomUntilPixelData = accessor.Write(dicom.GetBufferData(), pixelDataOffset, |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
703 FileContentType_DicomUntilPixelData, compression, storeMD5_); |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
704 attachments.push_back(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
705 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
706 |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
707 typedef std::map<MetadataType, std::string> InstanceMetadata; |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
708 InstanceMetadata instanceMetadata; |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
709 |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
710 try |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
711 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
712 result.SetStatus(index_.Store( |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
713 instanceMetadata, summary, attachments, dicom.GetMetadata(), dicom.GetOrigin(), overwrite, |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
714 hasTransferSyntax, transferSyntax, hasPixelDataOffset, pixelDataOffset, pixelDataVR, isReconstruct)); |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
715 } |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
716 catch (OrthancException& ex) |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
717 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
718 if (ex.GetErrorCode() == ErrorCode_DuplicateResource) |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
719 { |
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
720 LOG(WARNING) << "Duplicate instance, deleting the attachments"; |
5529
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
721 } |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
722 else |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
723 { |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
724 LOG(ERROR) << "Unexpected error while storing an instance in DB, cancelling and deleting the attachments: " << ex.GetDetails(); |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
725 } |
5514 | 726 |
5529
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
727 accessor.Remove(dicomInfo); |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
728 |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
729 if (dicomUntilPixelData.IsValid()) |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
730 { |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
731 accessor.Remove(dicomUntilPixelData); |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
732 } |
acdb8d78bf99
Whatever the SQL error that happens while inserting an instance in DB, remove the attachments that have been added to avoid orphan files
Alain Mazy <am@osimis.io>
parents:
5514
diff
changeset
|
733 |
5514 | 734 throw; |
5464
38f1d06875ad
delete attachment in case of same instance being uploaded multiple times at the same time
Alain Mazy <am@osimis.io>
parents:
5450
diff
changeset
|
735 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
736 |
1433
461e7554bff7
refactoring: LuaScripting
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1427
diff
changeset
|
737 // Only keep the metadata for the "instance" level |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
738 dicom.ClearMetadata(); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
739 |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
740 for (InstanceMetadata::const_iterator it = instanceMetadata.begin(); |
1304 | 741 it != instanceMetadata.end(); ++it) |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
742 { |
4506
ac69c9f76c71
refactoring ServerIndex::Store()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4505
diff
changeset
|
743 dicom.AddMetadata(ResourceType_Instance, it->first, it->second); |
1067
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
744 } |
ace99e272203
access metadata in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1066
diff
changeset
|
745 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
746 if (result.GetStatus() != StoreStatus_Success) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
747 { |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
748 accessor.Remove(dicomInfo); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
749 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
750 if (dicomUntilPixelData.IsValid()) |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
751 { |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
752 accessor.Remove(dicomUntilPixelData); |
4500
3b4940bca158
added safeguards in Orthanc::FileInfo
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4499
diff
changeset
|
753 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
754 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
755 |
4994 | 756 if (!isReconstruct) |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
757 { |
4994 | 758 // skip logs in case of reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
759 switch (result.GetStatus()) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
760 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
761 case StoreStatus_Success: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
762 LOG(INFO) << "New instance stored (" << resultPublicId << ")"; |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
763 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
764 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
765 case StoreStatus_AlreadyStored: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
766 LOG(INFO) << "Instance already stored (" << resultPublicId << ")"; |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
767 break; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
768 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
769 case StoreStatus_Failure: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
770 LOG(ERROR) << "Unknown store failure while storing instance " << resultPublicId; |
5296
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
771 throw OrthancException(ErrorCode_InternalError, HttpStatus_500_InternalServerError); |
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
772 |
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
773 case StoreStatus_StorageFull: |
5496
e4294feb0a3a
logs: display instance id when stored
Alain Mazy <am@osimis.io>
parents:
5485
diff
changeset
|
774 LOG(ERROR) << "Storage full while storing instance " << resultPublicId; |
5296
5053a10da5a2
Fix orphan files remaining in storage when working with MaximumStorageSize
Alain Mazy <am@osimis.io>
parents:
5248
diff
changeset
|
775 throw OrthancException(ErrorCode_FullStorage, HttpStatus_507_InsufficientStorage); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
776 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
777 default: |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
778 // This should never happen |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
779 break; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
780 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
781 |
4994 | 782 // skip all signals if this is a reconstruction |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
783 if (result.GetStatus() == StoreStatus_Success || |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
784 result.GetStatus() == StoreStatus_AlreadyStored) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
785 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
786 boost::shared_lock<boost::shared_mutex> lock(listenersMutex_); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
787 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
788 for (ServerListeners::iterator it = listeners_.begin(); it != listeners_.end(); ++it) |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
789 { |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
790 try |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
791 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
792 it->GetListener().SignalStoredInstance(resultPublicId, dicom, simplifiedTags); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
793 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
794 catch (OrthancException& e) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
795 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
796 LOG(ERROR) << "Error in the " << it->GetDescription() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
797 << " callback while receiving an instance: " << e.What() |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
798 << " (code " << e.GetErrorCode() << ")"; |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
799 } |
1066
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
800 } |
bb82e5e818e9
OnStoredInstance callback in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1065
diff
changeset
|
801 } |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
802 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
803 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
804 return result; |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
805 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
806 catch (OrthancException& e) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
807 { |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
808 if (e.GetErrorCode() == ErrorCode_InexistentTag) |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
809 { |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
810 summary.LogMissingTagsForStore(); |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
811 } |
4505
97d103b57cd1
removed cached dicom summary from DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4504
diff
changeset
|
812 |
1004
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
813 throw; |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
814 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
815 } |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
816 |
a226e0959d8b
DicomInstanceToStore
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1002
diff
changeset
|
817 |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
818 ServerContext::StoreResult ServerContext::Store(std::string& resultPublicId, |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
819 DicomInstanceToStore& receivedDicom, |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
820 StoreInstanceMode mode) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
821 { |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
822 DicomInstanceToStore* dicom = &receivedDicom; |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
823 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
824 // WARNING: The scope of "modifiedBuffer" and "modifiedDicom" must |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
825 // be the same as that of "dicom" |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
826 MallocMemoryBuffer modifiedBuffer; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
827 std::unique_ptr<DicomInstanceToStore> modifiedDicom; |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
828 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
829 #if ORTHANC_ENABLE_PLUGINS == 1 |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
830 if (HasPlugins()) |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
831 { |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
832 // New in Orthanc 1.10.0 |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
833 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
834 OrthancPluginReceivedInstanceAction action = GetPlugins().ApplyReceivedInstanceCallbacks( |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
835 modifiedBuffer, receivedDicom.GetBufferData(), receivedDicom.GetBufferSize(), receivedDicom.GetOrigin().GetRequestOrigin()); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
836 |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
837 switch (action) |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
838 { |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
839 case OrthancPluginReceivedInstanceAction_Discard: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
840 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
841 CLOG(INFO, PLUGINS) << "A plugin has discarded the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
842 StoreResult result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
843 result.SetStatus(StoreStatus_FilteredOut); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
844 return result; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
845 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
846 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
847 case OrthancPluginReceivedInstanceAction_KeepAsIs: |
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
848 // This path is also used when no ReceivedInstanceCallback is installed by the plugins |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
849 break; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
850 |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
851 case OrthancPluginReceivedInstanceAction_Modify: |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
852 if (modifiedBuffer.GetSize() > 0 && |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
853 modifiedBuffer.GetData() != NULL) |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
854 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
855 CLOG(INFO, PLUGINS) << "A plugin has modified the instance in its ReceivedInstanceCallback"; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
856 modifiedDicom.reset(DicomInstanceToStore::CreateFromBuffer(modifiedBuffer.GetData(), modifiedBuffer.GetSize())); |
4919
676e03e69703
added origin in OrthancPluginReceivedInstanceCallback
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4913
diff
changeset
|
857 modifiedDicom->SetOrigin(receivedDicom.GetOrigin()); |
4913
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
858 dicom = modifiedDicom.get(); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
859 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
860 else |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
861 { |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
862 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback plugin is not returning a modified buffer while it has modified the instance"); |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
863 } |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
864 break; |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
865 |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
866 default: |
c1b19f95e166
fix signature of OrthancPluginReceivedInstanceCallback for ABI compatibility
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4900
diff
changeset
|
867 throw OrthancException(ErrorCode_Plugin, "The ReceivedInstanceCallback has returned an invalid value"); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
868 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
869 } |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
870 #endif |
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
871 |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
872 return TranscodeAndStore(resultPublicId, dicom, mode); |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
873 } |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
874 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
875 ServerContext::StoreResult ServerContext::TranscodeAndStore(std::string& resultPublicId, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
876 DicomInstanceToStore* dicom, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
877 StoreInstanceMode mode, |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
878 bool isReconstruct) |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
879 { |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
880 |
5148
2df546a76e17
If specifying 'Transcode' option to /modify or /anonymize, this value will take over the 'IngestTranscoding' global configuration
Alain Mazy <am@osimis.io>
parents:
5147
diff
changeset
|
881 if (!isIngestTranscoding_ || dicom->SkipIngestTranscoding()) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
882 { |
3941
771dbd9eb3bd
class CleaningInstancesJob to share cleaning code by merge/split jobs
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3939
diff
changeset
|
883 // No automated transcoding. This was the only path in Orthanc <= 1.6.1. |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
884 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
885 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
886 else |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
887 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
888 // Automated transcoding of incoming DICOM instance |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
889 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
890 bool transcode = false; |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
891 |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
892 DicomTransferSyntax sourceSyntax; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
893 if (!dicom->LookupTransferSyntax(sourceSyntax) || |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
894 sourceSyntax == ingestTransferSyntax_) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
895 { |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
896 // Don't transcode if the incoming DICOM is already in the proper transfer syntax |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
897 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
898 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
899 else if (!IsTranscodableTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
900 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
901 // Don't try to transcode video files, this is useless (new in |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
902 // Orthanc 1.8.2). This could be accepted in the future if |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
903 // video transcoding gets implemented. |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
904 transcode = false; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
905 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
906 else if (IsUncompressedTransferSyntax(sourceSyntax)) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
907 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
908 // This is an uncompressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
909 transcode = ingestTranscodingOfUncompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
910 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
911 else |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
912 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
913 // This is an compressed transfer syntax (new in Orthanc 1.8.2) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
914 transcode = ingestTranscodingOfCompressed_; |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
915 } |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
916 |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
917 if (!transcode) |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
918 { |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
919 // No transcoding |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
920 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
921 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
922 else |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
923 { |
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
924 // Trancoding |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
925 std::set<DicomTransferSyntax> syntaxes; |
3939
c205f670098e
new configuration options: BuiltinDecoderTranscoderOrder and IngestTranscoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3938
diff
changeset
|
926 syntaxes.insert(ingestTransferSyntax_); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
927 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
928 IDicomTranscoder::DicomImage source; |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
929 source.SetExternalBuffer(dicom->GetBufferData(), dicom->GetBufferSize()); |
4384
7e0d015ad109
new configuration options IngestTranscodingOfUncompressed and IngestTranscodingOfCompressed
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4376
diff
changeset
|
930 |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
931 IDicomTranscoder::DicomImage transcoded; |
3951
5fe8c6d3212e
removed useless information "hasSopInstanceUidChanged"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3947
diff
changeset
|
932 if (Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
933 { |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
934 std::unique_ptr<ParsedDicomFile> tmp(transcoded.ReleaseAsParsedDicomFile()); |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
935 |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
936 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*tmp)); |
4845
02d77189d8ba
added ReceivedInstanceCallback + sample C++ plugin
Alain Mazy <am@osimis.io>
parents:
4831
diff
changeset
|
937 toStore->SetOrigin(dicom->GetOrigin()); |
5147
19ccae2e0371
Fix issue #212 (Anonymization process transcodes data and loses resource link)
Alain Mazy <am@osimis.io>
parents:
5111
diff
changeset
|
938 toStore->CopyMetadata(dicom->GetMetadata()); |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
939 |
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
940 StoreResult result = StoreAfterTranscoding(resultPublicId, *toStore, mode, isReconstruct); |
3938 | 941 assert(resultPublicId == tmp->GetHasher().HashInstance()); |
942 | |
4796
94616af363ec
added ReceivedCStoreInstanceFilter lua callback + OrthancPluginRegisterIncomingCStoreInstanceFilter in sdk
Alain Mazy <am@osimis.io>
parents:
4789
diff
changeset
|
943 return result; |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
944 } |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
945 else |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
946 { |
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
947 // Cannot transcode => store the original file |
4988
8fba26292a9f
Housekeeper plugin: finalizing + integration tests ok
Alain Mazy <am@osimis.io>
parents:
4984
diff
changeset
|
948 return StoreAfterTranscoding(resultPublicId, *dicom, mode, isReconstruct); |
3945
0b3256c3ee14
simplified IDicomTranscoder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3944
diff
changeset
|
949 } |
3912
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
950 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
951 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
952 } |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
953 |
7610af1532c3
prototyping automated transcoding of incoming DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3911
diff
changeset
|
954 |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
955 void ServerContext::AnswerAttachment(RestApiOutput& output, |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
956 const std::string& resourceId, |
1146
200fcac0deb4
optimization for access to attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1145
diff
changeset
|
957 FileContentType content) |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
958 { |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
959 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
960 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
961 if (!index_.LookupAttachment(attachment, revision, resourceId, content)) |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
227
diff
changeset
|
962 { |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
963 throw OrthancException(ErrorCode_UnknownResource); |
236 | 964 } |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
965 else |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
966 { |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
967 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
968 accessor.AnswerFile(output, attachment, GetFileContentMime(content)); |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
969 } |
226
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
970 } |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
971 |
8a26a8e85edf
refactoring to read files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
224
diff
changeset
|
972 |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
973 void ServerContext::ChangeAttachmentCompression(const std::string& resourceId, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
974 FileContentType attachmentType, |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
975 CompressionType compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
976 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
977 LOG(INFO) << "Changing compression type for attachment " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
978 << EnumerationToString(attachmentType) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
979 << " of resource " << resourceId << " to " |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
980 << compression; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
981 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
982 FileInfo attachment; |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
983 int64_t revision; |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
984 if (!index_.LookupAttachment(attachment, revision, resourceId, attachmentType)) |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
985 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
986 throw OrthancException(ErrorCode_UnknownResource); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
987 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
988 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
989 if (attachment.GetCompressionType() == compression) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
990 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
991 // Nothing to do |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
992 return; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
993 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
994 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
995 std::string content; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
996 |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
997 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
998 accessor.Read(content, attachment); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
999 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1000 FileInfo modified = accessor.Write(content.empty() ? NULL : content.c_str(), |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1001 content.size(), attachmentType, compression, storeMD5_); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1002 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1003 try |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1004 { |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1005 int64_t newRevision; // ignored |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1006 StoreStatus status = index_.AddAttachment(newRevision, modified, resourceId, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1007 true, revision, modified.GetUncompressedMD5()); |
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1008 if (status != StoreStatus_Success) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1009 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1010 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1011 throw OrthancException(ErrorCode_Database); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1012 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1013 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1014 catch (OrthancException&) |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
1015 { |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1016 accessor.Remove(modified); |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1017 throw; |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1018 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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diff
changeset
|
1019 } |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
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parents:
1632
diff
changeset
|
1020 |
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1632
diff
changeset
|
1021 |
4514
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1022 static void InjectEmptyPixelData(Json::Value& dicomAsJson) |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
1023 { |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1024 // This is for backward compatibility with Orthanc <= 1.9.0 |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
1025 Json::Value pixelData = Json::objectValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1026 pixelData["Name"] = "PixelData"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1027 pixelData["Type"] = "Null"; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1028 pixelData["Value"] = Json::nullValue; |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1029 |
5b929e6b3c36
removal of "dicom-as-json" attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4513
diff
changeset
|
1030 dicomAsJson["7fe0,0010"] = pixelData; |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
1031 } |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
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diff
changeset
|
1032 |
5b929e6b3c36
removal of "dicom-as-json" attachments
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parents:
4513
diff
changeset
|
1033 |
2124 | 1034 void ServerContext::ReadDicomAsJson(Json::Value& result, |
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
1035 const std::string& instancePublicId, |
e4045b3c9772
ignore-length argument if retrieving DICOM tags
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2382
diff
changeset
|
1036 const std::set<DicomTag>& ignoreTagLength) |
226
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diff
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|
1037 { |
4514
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diff
changeset
|
1038 /** |
5b929e6b3c36
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4513
diff
changeset
|
1039 * CASE 1: The DICOM file, truncated at pixel data, is available |
5b929e6b3c36
removal of "dicom-as-json" attachments
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diff
changeset
|
1040 * as an attachment (it was created either because the storage |
4666 | 1041 * area does not support range reads, or if "StorageCompression" |
4514
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1042 * is enabled). Simply return this attachment. |
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1043 **/ |
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1044 |
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|
1045 FileInfo attachment; |
4629 | 1046 int64_t revision; // Ignored |
4514
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1047 |
4627
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1048 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
2409
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1049 { |
4514
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1050 std::string dicom; |
4513
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1051 |
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1052 { |
5184
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|
1053 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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1054 accessor.Read(dicom, attachment); |
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1055 } |
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1056 |
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1057 ParsedDicomFile parsed(dicom); |
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1058 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1059 InjectEmptyPixelData(result); |
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1060 } |
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1061 else |
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1062 { |
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1063 /** |
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1064 * The truncated DICOM file is not stored as a standalone |
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1065 * attachment. Lookup whether the pixel data offset has already |
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1066 * been computed for this instance. |
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1067 **/ |
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1068 |
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1069 bool hasPixelDataOffset; |
4519 | 1070 uint64_t pixelDataOffset = 0; // dummy initialization |
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1071 |
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1072 { |
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1073 std::string s; |
4623
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1074 if (index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
4514
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1075 MetadataType_Instance_PixelDataOffset)) |
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1076 { |
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1077 hasPixelDataOffset = false; |
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1078 |
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1079 if (!s.empty()) |
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1080 { |
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1081 try |
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1082 { |
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1083 pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1084 hasPixelDataOffset = true; |
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1085 } |
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1086 catch (boost::bad_lexical_cast&) |
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1087 { |
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1088 } |
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1089 } |
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1090 |
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1091 if (!hasPixelDataOffset) |
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1092 { |
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1093 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1094 } |
4513
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1095 } |
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1096 else |
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1097 { |
4514
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1098 // This instance was created by a version of Orthanc <= 1.9.0 |
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1099 hasPixelDataOffset = false; |
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1100 } |
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1101 } |
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1102 |
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1103 |
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1104 if (hasPixelDataOffset && |
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1105 area_.HasReadRange() && |
4627
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1106 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom) && |
4514
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1107 attachment.GetCompressionType() == CompressionType_None) |
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1108 { |
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1109 /** |
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1110 * CASE 2: The pixel data offset is known, AND that a range read |
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1111 * can be used to retrieve the truncated DICOM file. Note that |
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1112 * this case cannot be used if "StorageCompression" option is |
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1113 * "true". |
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1114 **/ |
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1115 |
4900
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1116 std::string dicom; |
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1117 |
4519 | 1118 { |
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1119 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
5420
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1120 accessor.ReadStartRange(dicom, attachment, pixelDataOffset); |
4514
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1121 } |
4900
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1122 |
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1123 assert(dicom.size() == pixelDataOffset); |
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1124 ParsedDicomFile parsed(dicom); |
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1125 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1126 InjectEmptyPixelData(result); |
4514
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1127 } |
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1128 else if (ignoreTagLength.empty() && |
4627
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1129 index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomAsJson)) |
4514
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1130 { |
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1131 /** |
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1132 * CASE 3: This instance was created using Orthanc <= |
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1133 * 1.9.0. Reuse the old "DICOM-as-JSON" attachment if available. |
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1134 * This is for backward compatibility: A call to |
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1135 * "/tools/invalidate-tags" or to one flavors of |
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1136 * "/.../.../reconstruct" will disable this case. |
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1137 **/ |
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1138 |
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1139 std::string dicomAsJson; |
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1140 |
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1141 { |
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1142 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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1143 accessor.Read(dicomAsJson, attachment); |
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1144 } |
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1145 |
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1146 if (!Toolbox::ReadJson(result, dicomAsJson)) |
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1147 { |
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1148 throw OrthancException(ErrorCode_CorruptedFile, |
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1149 "Corrupted DICOM-as-JSON attachment of instance: " + instancePublicId); |
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1150 } |
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1151 } |
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1152 else |
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1153 { |
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|
1154 /** |
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1155 * CASE 4: Neither the truncated DICOM file is accessible, nor |
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1156 * the DICOM-as-JSON summary. We have to retrieve the full DICOM |
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|
1157 * file from the storage area. |
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|
1158 **/ |
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|
1159 |
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1160 std::string dicom; |
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|
1161 ReadDicom(dicom, instancePublicId); |
4513
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1162 |
4514
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1163 ParsedDicomFile parsed(dicom); |
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1164 OrthancConfiguration::DefaultDicomDatasetToJson(result, parsed, ignoreTagLength); |
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1165 |
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|
1166 if (!hasPixelDataOffset) |
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|
1167 { |
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|
1168 /** |
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1169 * The pixel data offset was never computed for this |
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1170 * instance, which indicates that it was created using |
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1171 * Orthanc <= 1.9.0, or that calls to |
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1172 * "LookupPixelDataOffset()" from earlier versions of |
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1173 * Orthanc have failed. Try again this precomputation now |
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1174 * for future calls. |
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1175 **/ |
5316
03501a258d9e
added instance metadata "PixelDataVR"
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5296
diff
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|
1176 ValueRepresentation pixelDataVR; |
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|
1177 if (DicomStreamReader::LookupPixelDataOffset(pixelDataOffset, pixelDataVR, dicom) && |
4514
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|
1178 pixelDataOffset < dicom.size()) |
4513
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1179 { |
4623
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1180 index_.OverwriteMetadata(instancePublicId, MetadataType_Instance_PixelDataOffset, |
95ffe3b6ef7c
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1181 boost::lexical_cast<std::string>(pixelDataOffset)); |
4514
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|
1182 |
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1183 if (!area_.HasReadRange() || |
4519 | 1184 compressionEnabled_) |
4514
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1185 { |
4627
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1186 int64_t newRevision; |
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1187 AddAttachment(newRevision, instancePublicId, FileContentType_DicomUntilPixelData, |
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|
1188 dicom.empty() ? NULL: dicom.c_str(), pixelDataOffset, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
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4629
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|
1189 false /* no old revision */, -1 /* dummy revision */, "" /* dummy MD5 */); |
4514
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|
1190 } |
4513
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1191 } |
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|
1192 } |
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|
1193 } |
226
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1194 } |
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1195 } |
227
209ca3f6db62
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1196 |
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1197 |
4511
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ServerContext::ReadDicomUntilPixelData()
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1198 void ServerContext::ReadDicomAsJson(Json::Value& result, |
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ServerContext::ReadDicomUntilPixelData()
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|
1199 const std::string& instancePublicId) |
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ServerContext::ReadDicomUntilPixelData()
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1200 { |
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|
1201 std::set<DicomTag> ignoreTagLength; |
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ServerContext::ReadDicomUntilPixelData()
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|
1202 ReadDicomAsJson(result, instancePublicId, ignoreTagLength); |
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|
1203 } |
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1204 |
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1205 |
4509
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|
1206 void ServerContext::ReadDicom(std::string& dicom, |
5427 | 1207 std::string& attachmentId, |
4509
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|
1208 const std::string& instancePublicId) |
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|
1209 { |
4627
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|
1210 int64_t revision; |
5427 | 1211 ReadAttachment(dicom, revision, attachmentId, instancePublicId, FileContentType_Dicom, true /* uncompress */); |
1212 } | |
1213 | |
1214 | |
1215 void ServerContext::ReadDicom(std::string& dicom, | |
1216 const std::string& instancePublicId) | |
1217 { | |
1218 std::string attachmentId; | |
1219 ReadDicom(dicom, attachmentId, instancePublicId); | |
4509
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|
1220 } |
4792
434843934307
Added a StorageCache in the StorageAccessor
Alain Mazy <am@osimis.io>
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|
1221 |
434843934307
Added a StorageCache in the StorageAccessor
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|
1222 void ServerContext::ReadDicomForHeader(std::string& dicom, |
434843934307
Added a StorageCache in the StorageAccessor
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|
1223 const std::string& instancePublicId) |
434843934307
Added a StorageCache in the StorageAccessor
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|
1224 { |
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Added a StorageCache in the StorageAccessor
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|
1225 if (!ReadDicomUntilPixelData(dicom, instancePublicId)) |
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Added a StorageCache in the StorageAccessor
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|
1226 { |
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|
1227 ReadDicom(dicom, instancePublicId); |
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|
1228 } |
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|
1229 } |
4509
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1230 |
4511
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1231 bool ServerContext::ReadDicomUntilPixelData(std::string& dicom, |
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1232 const std::string& instancePublicId) |
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1233 { |
5333
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|
1234 FileInfo attachment; |
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1235 int64_t revision; // Ignored |
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1236 if (index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_DicomUntilPixelData)) |
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|
1237 { |
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|
1238 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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1239 |
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|
1240 accessor.Read(dicom, attachment); |
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1241 assert(dicom.size() == attachment.GetUncompressedSize()); |
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1242 |
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|
1243 return true; |
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1244 } |
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1245 |
4511
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1246 if (!area_.HasReadRange()) |
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1247 { |
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1248 return false; |
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1249 } |
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1250 |
4627
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|
1251 if (!index_.LookupAttachment(attachment, revision, instancePublicId, FileContentType_Dicom)) |
4511
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1252 { |
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1253 throw OrthancException(ErrorCode_InternalError, |
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1254 "Unable to read the DICOM file of instance " + instancePublicId); |
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1255 } |
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1256 |
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1257 std::string s; |
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1258 |
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|
1259 if (attachment.GetCompressionType() == CompressionType_None && |
4623
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1260 index_.LookupMetadata(s, revision, instancePublicId, ResourceType_Instance, |
4511
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1261 MetadataType_Instance_PixelDataOffset) && |
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1262 !s.empty()) |
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1263 { |
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1264 try |
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1265 { |
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1266 uint64_t pixelDataOffset = boost::lexical_cast<uint64_t>(s); |
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1267 |
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1268 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
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Added a StorageCache in the StorageAccessor
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1269 |
5420
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1270 accessor.ReadStartRange(dicom, attachment, pixelDataOffset); |
4900
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1271 assert(dicom.size() == pixelDataOffset); |
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1272 |
4511
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1273 return true; // Success |
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1274 } |
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1275 catch (boost::bad_lexical_cast&) |
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1276 { |
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1277 LOG(ERROR) << "Metadata \"PixelDataOffset\" is corrupted for instance: " << instancePublicId; |
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1278 } |
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1279 } |
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1280 |
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1281 return false; |
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1282 } |
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1283 |
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ServerContext::ReadDicomUntilPixelData()
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1284 |
2128
9329ba17a069
Possibility to DELETE "dicom-as-json" attachments to reconstruct them
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1285 void ServerContext::ReadAttachment(std::string& result, |
4627
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1286 int64_t& revision, |
5427 | 1287 std::string& attachmentId, |
2128
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1288 const std::string& instancePublicId, |
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1289 FileContentType content, |
5048
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Alain Mazy <am@osimis.io>
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1290 bool uncompressIfNeeded, |
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1291 bool skipCache) |
227
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1292 { |
232
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1293 FileInfo attachment; |
4627
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1294 if (!index_.LookupAttachment(attachment, revision, instancePublicId, content)) |
227
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1295 { |
2956 | 1296 throw OrthancException(ErrorCode_InternalError, |
1297 "Unable to read attachment " + EnumerationToString(content) + | |
1298 " of instance " + instancePublicId); | |
227
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1299 } |
1550 | 1300 |
3175
574890d14c92
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1301 assert(attachment.GetContentType() == content); |
5427 | 1302 attachmentId = attachment.GetUuid(); |
1303 | |
1550 | 1304 { |
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1305 std::unique_ptr<StorageAccessor> accessor; |
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1306 |
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|
1307 if (skipCache) |
5048
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|
1308 { |
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1309 accessor.reset(new StorageAccessor(area_, GetMetricsRegistry())); |
5048
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1310 } |
5184
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1311 else |
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1312 { |
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|
1313 accessor.reset(new StorageAccessor(area_, storageCache_, GetMetricsRegistry())); |
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1314 } |
4509
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removed ServerContext::ReadAttachment()
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|
1315 |
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removed ServerContext::ReadAttachment()
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|
1316 if (uncompressIfNeeded) |
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1317 { |
5184
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|
1318 accessor->Read(result, attachment); |
4509
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1319 } |
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|
1320 else |
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removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1321 { |
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removed ServerContext::ReadAttachment()
Sebastien Jodogne <s.jodogne@gmail.com>
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|
1322 // Do not uncompress the content of the storage area, return the |
98b7b9d21d83
removed ServerContext::ReadAttachment()
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|
1323 // raw data |
5184
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diff
changeset
|
1324 accessor->ReadRaw(result, attachment); |
4509
98b7b9d21d83
removed ServerContext::ReadAttachment()
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diff
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|
1325 } |
1550 | 1326 } |
227
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|
1327 } |
285
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|
1328 |
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1329 |
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diff
changeset
|
1330 ServerContext::DicomCacheLocker::DicomCacheLocker(ServerContext& context, |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1331 const std::string& instancePublicId) : |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1332 context_(context), |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1333 instancePublicId_(instancePublicId) |
285
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1334 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1335 accessor_.reset(new ParsedDicomCache::Accessor(context_.dicomCache_, instancePublicId)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1336 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1337 if (!accessor_->IsValid()) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1338 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1339 accessor_.reset(NULL); |
285
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1340 |
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changeset
|
1341 // Throttle to avoid loading several large DICOM files simultaneously |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1342 largeDicomLocker_.reset(new Semaphore::Locker(context.largeDicomThrottler_)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1343 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1344 std::string content; |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1345 context_.ReadDicom(content, instancePublicId); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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|
1346 |
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1347 // Release the throttle if loading "small" DICOM files (under |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1348 // 50MB, which is an arbitrary value) |
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changeset
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1349 if (content.size() < 50 * 1024 * 1024) |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1350 { |
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1351 largeDicomLocker_.reset(NULL); |
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1352 } |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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diff
changeset
|
1353 |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1354 dicom_.reset(new ParsedDicomFile(content)); |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1355 dicomSize_ = content.size(); |
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1356 } |
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changeset
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1357 |
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|
1358 assert(accessor_.get() != NULL || |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1359 dicom_.get() != NULL); |
778
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diff
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|
1360 } |
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refactoring of the mutex for the dicom cache
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diff
changeset
|
1361 |
aebf0071020e
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changeset
|
1362 |
aebf0071020e
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diff
changeset
|
1363 ServerContext::DicomCacheLocker::~DicomCacheLocker() |
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|
1364 { |
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1365 if (dicom_.get() != NULL) |
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1366 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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1367 try |
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1368 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
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changeset
|
1369 context_.dicomCache_.Acquire(instancePublicId_, dicom_.release(), dicomSize_); |
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1370 } |
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1371 catch (OrthancException&) |
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1372 { |
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1373 } |
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1374 } |
285
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1375 } |
304 | 1376 |
1377 | |
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changeset
|
1378 ParsedDicomFile& ServerContext::DicomCacheLocker::GetDicom() const |
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1379 { |
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|
1380 if (dicom_.get() != NULL) |
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1381 { |
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Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1382 return *dicom_; |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1383 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1384 else |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1385 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1386 assert(accessor_.get() != NULL); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1387 return accessor_->GetDicom(); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1388 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1389 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1390 |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1391 |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1392 void ServerContext::SetStoreMD5ForAttachments(bool storeMD5) |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1393 { |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1394 LOG(INFO) << "Storing MD5 for attachments: " << (storeMD5 ? "yes" : "no"); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1395 storeMD5_ = storeMD5; |
695
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1396 } |
c59bc408fb10
parameter to disable the computation of the MD5
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
689
diff
changeset
|
1397 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1398 |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1399 bool ServerContext::AddAttachment(int64_t& newRevision, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1400 const std::string& resourceId, |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1401 FileContentType attachmentType, |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1402 const void* data, |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1403 size_t size, |
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
1404 bool hasOldRevision, |
4640
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1405 int64_t oldRevision, |
66109d24d26e
"ETag" headers for metadata and attachments now allow strong comparison (MD5 is included)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4629
diff
changeset
|
1406 const std::string& oldMD5) |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1407 { |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1408 LOG(INFO) << "Adding attachment " << EnumerationToString(attachmentType) << " to resource " << resourceId; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1409 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1410 // TODO Should we use "gzip" instead? |
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1411 CompressionType compression = (compressionEnabled_ ? CompressionType_ZlibWithSize : CompressionType_None); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1412 |
5184
dd085f7e7e71
cleaning new constructors of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5183
diff
changeset
|
1413 StorageAccessor accessor(area_, storageCache_, GetMetricsRegistry()); |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1414 FileInfo attachment = accessor.Write(data, size, attachmentType, compression, storeMD5_); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1415 |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1416 try |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1417 { |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1418 StoreStatus status = index_.AddAttachment( |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1419 newRevision, attachment, resourceId, hasOldRevision, oldRevision, oldMD5); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1420 if (status != StoreStatus_Success) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1421 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1422 accessor.Remove(attachment); |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1423 return false; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1424 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1425 else |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1426 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1427 return true; |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1428 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1429 } |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1430 catch (OrthancException&) |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1431 { |
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1432 // Fixed in Orthanc 1.9.6 |
1549
e5e975e9b738
refactoring and simplification of StorageAccessor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1548
diff
changeset
|
1433 accessor.Remove(attachment); |
4752
2f35e6b765e5
Fix orphaned attachments if bad revision number is provided
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4694
diff
changeset
|
1434 throw; |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1435 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
1436 } |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1437 |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1438 |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1439 bool ServerContext::DeleteResource(Json::Value& remainingAncestor, |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1440 const std::string& uuid, |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1441 ResourceType expectedType) |
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1442 { |
2507 | 1443 if (expectedType == ResourceType_Instance) |
1444 { | |
1445 // remove the file from the DicomCache | |
1446 dicomCache_.Invalidate(uuid); | |
1447 } | |
1448 | |
4694
da1edb7d6332
"/tools/bulk-delete" to delete a group of multiple, unrelated resources at once
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4677
diff
changeset
|
1449 return index_.DeleteResource(remainingAncestor, uuid, expectedType); |
1145
0479d02c6778
Plugins can retrieve the path to Orthanc and to its configuration file
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1134
diff
changeset
|
1450 } |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1451 |
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1452 |
1198 | 1453 void ServerContext::SignalChange(const ServerIndexChange& change) |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1454 { |
4457
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1455 if (change.GetResourceType() == ResourceType_Instance && |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1456 change.GetChangeType() == ChangeType_Deleted) |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1457 { |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1458 dicomCache_.Invalidate(change.GetPublicId()); |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1459 } |
789676a8c96a
Refactoring and improvements to the cache of DICOM files in ServerContext
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4437
diff
changeset
|
1460 |
1436
0a3e3be59094
uncoupling of SignalChange for Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1434
diff
changeset
|
1461 pendingChanges_.Enqueue(change.Clone()); |
1189
6b9b02a16e99
NewChildInstance change type
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1165
diff
changeset
|
1462 } |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1463 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1464 |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1465 #if ORTHANC_ENABLE_PLUGINS == 1 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1466 void ServerContext::SetPlugins(OrthancPlugins& plugins) |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1467 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1468 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1469 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1470 plugins_ = &plugins; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1471 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1472 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1473 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1474 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1475 listeners_.push_back(ServerListener(plugins, "plugin")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1476 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1477 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1478 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1479 void ServerContext::ResetPlugins() |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1480 { |
3947
cf6eb4fc6841
fix issue 179: use a shared mutex to avoid deadlock in python plugins
Alain Mazy <alain@mazy.be>
parents:
3945
diff
changeset
|
1481 boost::unique_lock<boost::shared_mutex> lock(listenersMutex_); |
1459 | 1482 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1483 plugins_ = NULL; |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1484 |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1485 // TODO REFACTOR THIS |
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1486 listeners_.clear(); |
2738
3a55b77339ff
fix deadlock in Lua scripts
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2716
diff
changeset
|
1487 listeners_.push_back(ServerListener(luaListener_, "Lua")); |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1488 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1489 |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1490 |
1434
f9cd40166269
refactoring of OrthancPlugins, improvement in ServeFolders
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1433
diff
changeset
|
1491 const OrthancPlugins& ServerContext::GetPlugins() const |
1232
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1492 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1493 if (HasPlugins()) |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1494 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1495 return *plugins_; |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1496 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1497 else |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1498 { |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1499 throw OrthancException(ErrorCode_InternalError); |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1500 } |
f1c01451a8ee
Introspection of plugins, Plugins can extend Orthanc Explorer with custom JavaScript
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
1501 } |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1502 |
1741
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1503 OrthancPlugins& ServerContext::GetPlugins() |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1504 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1505 if (HasPlugins()) |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1506 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1507 return *plugins_; |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1508 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1509 else |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1510 { |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1511 throw OrthancException(ErrorCode_InternalError); |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1512 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1513 } |
06addfcd1d4c
OrthancStarted and OrthancStopped events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
1514 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1515 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1516 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1517 |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1518 bool ServerContext::HasPlugins() const |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1519 { |
2136
dd609a99d39a
uniformization of the macro naming
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2135
diff
changeset
|
1520 #if ORTHANC_ENABLE_PLUGINS == 1 |
1632
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1521 return (plugins_ != NULL); |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1522 #else |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1523 return false; |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1524 #endif |
eb8fbcf008b5
fix build with plugins disabled
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1582
diff
changeset
|
1525 } |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1526 |
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1741
diff
changeset
|
1527 |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1528 bool ServerContext::LookupOrReconstructMetadata(std::string& target, |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1529 const std::string& publicId, |
4460
6831de40acd9
New metadata automatically computed at the series level: "RemoteAET"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4457
diff
changeset
|
1530 ResourceType level, |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1531 MetadataType metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1532 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1533 // This is a backwards-compatibility function, that can |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1534 // reconstruct metadata that were not generated by an older |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1535 // release of Orthanc |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1536 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1537 if (metadata == MetadataType_Instance_SopClassUid || |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1538 metadata == MetadataType_Instance_TransferSyntax) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1539 { |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1540 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1541 if (index_.LookupMetadata(target, revision, publicId, level, metadata)) |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1542 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1543 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1544 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1545 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1546 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1547 // These metadata are mandatory in DICOM instances, and were |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1548 // introduced in Orthanc 1.2.0. The fact that |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1549 // "LookupMetadata()" has failed indicates that this database |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1550 // comes from an older release of Orthanc. |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1551 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1552 DicomTag tag(0, 0); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1553 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1554 switch (metadata) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1555 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1556 case MetadataType_Instance_SopClassUid: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1557 tag = DICOM_TAG_SOP_CLASS_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1558 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1559 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1560 case MetadataType_Instance_TransferSyntax: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1561 tag = DICOM_TAG_TRANSFER_SYNTAX_UID; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1562 break; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1563 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1564 default: |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1565 throw OrthancException(ErrorCode_InternalError); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1566 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1567 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1568 Json::Value dicomAsJson; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1569 ReadDicomAsJson(dicomAsJson, publicId); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1570 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1571 DicomMap tags; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1572 tags.FromDicomAsJson(dicomAsJson); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1573 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1574 const DicomValue* value = tags.TestAndGetValue(tag); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1575 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1576 if (value != NULL && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1577 !value->IsNull() && |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1578 !value->IsBinary()) |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1579 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1580 target = value->GetContent(); |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1581 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1582 // Store for reuse |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1583 index_.OverwriteMetadata(publicId, metadata, target); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1584 return true; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1585 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1586 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1587 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1588 // Should never happen |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1589 return false; |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1590 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1591 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1592 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1593 else |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1594 { |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1595 // No backward |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1596 int64_t revision; // Ignored |
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
1597 return index_.LookupMetadata(target, revision, publicId, level, metadata); |
3015
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1598 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1599 } |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1600 |
abe49ca61cd5
On C-FIND, avoid accessing the storage area whenever possible
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3012
diff
changeset
|
1601 |
2626 | 1602 void ServerContext::AddChildInstances(SetOfInstancesJob& job, |
1603 const std::string& publicId) | |
1604 { | |
1605 std::list<std::string> instances; | |
1606 GetIndex().GetChildInstances(instances, publicId); | |
1607 | |
1608 job.Reserve(job.GetInstancesCount() + instances.size()); | |
1609 | |
1610 for (std::list<std::string>::const_iterator | |
1611 it = instances.begin(); it != instances.end(); ++it) | |
1612 { | |
1613 job.AddInstance(*it); | |
1614 } | |
1615 } | |
2940
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1616 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1617 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1618 void ServerContext::SignalUpdatedModalities() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1619 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1620 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1621 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1622 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1623 GetPlugins().SignalUpdatedModalities(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1624 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1625 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1626 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1627 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1628 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1629 void ServerContext::SignalUpdatedPeers() |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1630 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1631 #if ORTHANC_ENABLE_PLUGINS == 1 |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1632 if (HasPlugins()) |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1633 { |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1634 GetPlugins().SignalUpdatedPeers(); |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1635 } |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1636 #endif |
4767d36679ed
refactoring access to Orthanc configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2925
diff
changeset
|
1637 } |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1638 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1639 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1640 IStorageCommitmentFactory::ILookupHandler* |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1641 ServerContext::CreateStorageCommitment(const std::string& jobId, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1642 const std::string& transactionUid, |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1643 const std::vector<std::string>& sopClassUids, |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1644 const std::vector<std::string>& sopInstanceUids, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1645 const std::string& remoteAet, |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1646 const std::string& calledAet) |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1647 { |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1648 #if ORTHANC_ENABLE_PLUGINS == 1 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1649 if (HasPlugins()) |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1650 { |
3662
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1651 return GetPlugins().CreateStorageCommitment( |
d8371b4302ff
OrthancPluginRegisterStorageCommitmentScpCallback()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3660
diff
changeset
|
1652 jobId, transactionUid, sopClassUids, sopInstanceUids, remoteAet, calledAet); |
3660
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1653 } |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1654 #endif |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1655 |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1656 return NULL; |
f159b731c47d
IStorageCommitmentFactory
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
1657 } |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1658 |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1659 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1660 ImageAccessor* ServerContext::DecodeDicomFrame(const std::string& publicId, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1661 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1662 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1663 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1664 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1665 // Use Orthanc's built-in decoder, using the cache to speed-up |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1666 // things on multi-frame images |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1667 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1668 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1669 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1670 { |
4274 | 1671 ServerContext::DicomCacheLocker locker(*this, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1672 decoded.reset(locker.GetDicom().DecodeFrame(frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1673 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1674 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1675 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1676 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1677 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1678 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1679 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1680 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1681 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1682 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1683 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1684 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1685 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1686 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1687 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1688 // TODO: Store the raw buffer in the DicomCacheLocker |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1689 std::string dicomContent; |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1690 ReadDicom(dicomContent, publicId); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1691 |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1692 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1693 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1694 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1695 decoded.reset(GetPlugins().Decode(dicomContent.c_str(), dicomContent.size(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1696 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1697 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1698 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1699 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1700 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1701 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1702 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1703 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1704 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1705 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1706 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1707 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1708 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1709 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1710 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1711 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1712 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1713 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1714 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1715 ServerContext::DicomCacheLocker locker(*this, publicId); |
4203
4d42408da117
improving const-correctness in ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4196
diff
changeset
|
1716 return locker.GetDicom().DecodeFrame(frameIndex); |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1717 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1718 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1719 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1720 return NULL; // Built-in decoder is disabled |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1721 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1722 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1723 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1724 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1725 ImageAccessor* ServerContext::DecodeDicomFrame(const DicomInstanceToStore& dicom, |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1726 unsigned int frameIndex) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1727 { |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1728 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1729 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1730 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1731 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1732 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
1733 decoded.reset(dicom.DecodeFrame(frameIndex)); |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1734 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1735 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1736 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1737 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1738 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1739 if (decoded.get() != NULL) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1740 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1741 return decoded.release(); |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1742 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1743 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1744 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1745 #if ORTHANC_ENABLE_PLUGINS == 1 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1746 if (HasPlugins() && |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1747 GetPlugins().HasCustomImageDecoder()) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1748 { |
4265
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1749 std::unique_ptr<ImageAccessor> decoded; |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1750 try |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1751 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1752 decoded.reset(GetPlugins().Decode(dicom.GetBufferData(), dicom.GetBufferSize(), frameIndex)); |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1753 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1754 catch (OrthancException& e) |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1755 { |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1756 } |
f9eaf14d3d19
Fix decoding sequence if "BuiltinDecoderTranscoderOrder" is "Before"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4218
diff
changeset
|
1757 |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1758 if (decoded.get() != NULL) |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1759 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1760 return decoded.release(); |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1761 } |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1762 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1763 { |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1764 LOG(INFO) << "The installed image decoding plugins cannot handle an image, " |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1765 << "fallback to the built-in DCMTK decoder"; |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1766 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1767 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1768 #endif |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1769 |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1770 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1771 { |
4507
b4c58795f3a8
widening the use of DicomTransferSyntax enum
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4506
diff
changeset
|
1772 return dicom.DecodeFrame(frameIndex); |
3931
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1773 } |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1774 else |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1775 { |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1776 return NULL; |
e6606d3ec892
new configuration option: BuiltinDecoderTranscoderOrder
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3930
diff
changeset
|
1777 } |
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1778 } |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1779 |
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3913
diff
changeset
|
1780 |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1781 ImageAccessor* ServerContext::DecodeDicomFrame(const void* dicom, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1782 size_t size, |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1783 unsigned int frameIndex) |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1784 { |
4508
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
1785 std::unique_ptr<DicomInstanceToStore> instance(DicomInstanceToStore::CreateFromBuffer(dicom, size)); |
8f9090b137f1
Optimization in C-STORE SCP by avoiding an unnecessary DICOM parsing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4507
diff
changeset
|
1786 return DecodeDicomFrame(*instance, frameIndex); |
3980
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1787 } |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1788 |
e42f5445d20d
Fix decoding of DICOM images for plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3951
diff
changeset
|
1789 |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1790 void ServerContext::StoreWithTranscoding(std::string& sopClassUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1791 std::string& sopInstanceUid, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1792 DicomStoreUserConnection& connection, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1793 const std::string& dicom, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1794 bool hasMoveOriginator, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1795 const std::string& moveOriginatorAet, |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1796 uint16_t moveOriginatorId) |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1797 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1798 const void* data = dicom.empty() ? NULL : dicom.c_str(); |
5438
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
1799 const RemoteModalityParameters& modality = connection.GetParameters().GetRemoteModality(); |
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
1800 |
3911
0ef7f4528be2
renamed option TranscodingEnabled to TranscodeDicomProtocol
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3910
diff
changeset
|
1801 if (!transcodeDicomProtocol_ || |
5438
7a20ee948676
Added a new 'Telemis' manufacturer for DicomModalities
Alain Mazy <am@osimis.io>
parents:
5436
diff
changeset
|
1802 !modality.IsTranscodingAllowed()) |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1803 { |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1804 connection.Store(sopClassUid, sopInstanceUid, data, dicom.size(), |
5442
ac68a4383e51
improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents:
5438
diff
changeset
|
1805 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1806 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1807 else |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1808 { |
4465
fe774d8e904b
New configuration option: "DicomScuPreferredTransferSyntax" to control transcoding in C-STORE SCU
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4460
diff
changeset
|
1809 connection.Transcode(sopClassUid, sopInstanceUid, *this, data, dicom.size(), preferredTransferSyntax_, |
5442
ac68a4383e51
improved C-Store negotiation and logging
Alain Mazy <am@osimis.io>
parents:
5438
diff
changeset
|
1810 hasMoveOriginator, moveOriginatorAet, moveOriginatorId); |
3894
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1811 } |
8f7ad4989fec
transcoding to uncompressed transfer syntaxes over DICOM protocol is implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3839
diff
changeset
|
1812 } |
3930
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1813 |
b99acc213937
transcoder plugins and GDCM transcoding are working
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3928
diff
changeset
|
1814 |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1815 bool ServerContext::TranscodeWithCache(std::string& target, |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1816 const std::string& source, |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1817 const std::string& sourceInstanceId, |
5427 | 1818 const std::string& attachmentId, |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1819 DicomTransferSyntax targetSyntax) |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1820 { |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1821 StorageCache::Accessor cacheAccessor(storageCache_); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1822 |
5427 | 1823 if (!cacheAccessor.FetchTranscodedInstance(target, attachmentId, targetSyntax)) |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1824 { |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1825 IDicomTranscoder::DicomImage sourceDicom; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1826 sourceDicom.SetExternalBuffer(source); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1827 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1828 IDicomTranscoder::DicomImage targetDicom; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1829 std::set<DicomTransferSyntax> syntaxes; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1830 syntaxes.insert(targetSyntax); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1831 |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1832 if (Transcode(targetDicom, sourceDicom, syntaxes, true)) |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1833 { |
5427 | 1834 cacheAccessor.AddTranscodedInstance(attachmentId, targetSyntax, reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize()); |
5426
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1835 target = std::string(reinterpret_cast<const char*>(targetDicom.GetBufferData()), targetDicom.GetBufferSize()); |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1836 return true; |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1837 } |
c65e036d649b
StorageCache is now storing transcoded instances + added ?transcode=... option to the /file route.
Alain Mazy <am@osimis.io>
parents:
5420
diff
changeset
|
1838 |
c65e036d649b
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Alain Mazy <am@osimis.io>
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1839 return false; |
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Alain Mazy <am@osimis.io>
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1840 } |
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|
1841 |
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Alain Mazy <am@osimis.io>
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|
1842 return true; |
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Alain Mazy <am@osimis.io>
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1843 } |
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1844 |
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1845 |
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|
1846 bool ServerContext::Transcode(DicomImage& target, |
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1847 DicomImage& source /* in, "GetParsed()" possibly modified */, |
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1848 const std::set<DicomTransferSyntax>& allowedSyntaxes, |
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|
1849 bool allowNewSopInstanceUid) |
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1850 { |
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1851 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_Before) |
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1852 { |
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|
1853 if (dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
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1854 { |
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1855 return true; |
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1856 } |
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1857 } |
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1858 |
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1859 #if ORTHANC_ENABLE_PLUGINS == 1 |
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1860 if (HasPlugins() && |
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|
1861 GetPlugins().HasCustomTranscoder()) |
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1862 { |
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|
1863 if (GetPlugins().Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid)) |
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|
1864 { |
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|
1865 return true; |
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1866 } |
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1867 else if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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1868 { |
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|
1869 LOG(INFO) << "The installed transcoding plugins cannot handle an image, " |
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|
1870 << "fallback to the built-in DCMTK transcoder"; |
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1871 } |
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1872 } |
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|
1873 #endif |
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1874 |
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1875 if (builtinDecoderTranscoderOrder_ == BuiltinDecoderTranscoderOrder_After) |
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|
1876 { |
3951
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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1877 return dcmtkTranscoder_->Transcode(target, source, allowedSyntaxes, allowNewSopInstanceUid); |
3944
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1878 } |
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1879 else |
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1880 { |
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1881 return false; |
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1882 } |
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1883 } |
4375
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|
1884 |
4376
b002f9abe802
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diff
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|
1885 const std::string& ServerContext::GetDeidentifiedContent(const DicomElement &element) const |
4375
208029732d51
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|
1886 { |
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New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1887 static const std::string redactedContent = "*** POTENTIAL PHI ***"; |
5044
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Alain Mazy <am@osimis.io>
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|
1888 static const std::string emptyContent = ""; |
4375
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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|
1889 |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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changeset
|
1890 const DicomTag& tag = element.GetTag(); |
5044
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Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
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diff
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|
1891 if (element.GetValue().IsSequence()) |
6fed78e13233
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Alain Mazy <am@osimis.io>
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|
1892 { |
6fed78e13233
Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
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diff
changeset
|
1893 return emptyContent; |
6fed78e13233
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Alain Mazy <am@osimis.io>
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diff
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|
1894 } |
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Refactored DicomMap to handle sequences when needed
Alain Mazy <am@osimis.io>
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diff
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|
1895 |
4789
51ec061516c9
Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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diff
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|
1896 if (deidentifyLogs_ && |
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|
1897 !element.GetValue().GetContent().empty() && |
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Fix handling of option "DeidentifyLogs", notably for tags (0010,0010) and (0010,0020)
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diff
changeset
|
1898 logsDeidentifierRules_.IsAlteredTag(tag)) |
4375
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1899 { |
208029732d51
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Mark Poscablo <Mark.Poscablo@varian.com>
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|
1900 return redactedContent; |
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New config option "DeidentifyDimseQueryLogs"
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|
1901 } |
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New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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|
1902 else |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
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|
1903 { |
208029732d51
New config option "DeidentifyDimseQueryLogs"
Mark Poscablo <Mark.Poscablo@varian.com>
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diff
changeset
|
1904 return element.GetValue().GetContent(); |
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|
1905 } |
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|
1906 } |
4473
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1907 |
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1908 |
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|
1909 void ServerContext::GetAcceptedTransferSyntaxes(std::set<DicomTransferSyntax>& syntaxes) |
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|
1910 { |
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changeset
|
1911 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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|
1912 syntaxes = acceptedTransferSyntaxes_; |
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1913 } |
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1914 |
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|
1915 |
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|
1916 void ServerContext::SetAcceptedTransferSyntaxes(const std::set<DicomTransferSyntax>& syntaxes) |
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1917 { |
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1918 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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|
1919 acceptedTransferSyntaxes_ = syntaxes; |
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1920 } |
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1921 |
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|
1922 |
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|
1923 bool ServerContext::IsUnknownSopClassAccepted() |
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1924 { |
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1925 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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|
1926 return isUnknownSopClassAccepted_; |
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|
1927 } |
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|
1928 |
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|
1929 |
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|
1930 void ServerContext::SetUnknownSopClassAccepted(bool accepted) |
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1931 { |
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|
1932 boost::mutex::scoped_lock lock(dynamicOptionsMutex_); |
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1933 isUnknownSopClassAccepted_ = accepted; |
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diff
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|
1934 } |
4935
acd3f72e2a21
split ExpandResource in 2: read from DB and serialize to json. This will allow us to merge requested tags from both the DB and the file system
Alain Mazy <am@osimis.io>
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diff
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|
1935 |
5111
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
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5060
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changeset
|
1936 int64_t ServerContext::GetServerUpTime() const |
7547c7dfd017
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|
1937 { |
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|
1938 boost::posix_time::ptime nowUtc = boost::posix_time::second_clock::universal_time(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1939 boost::posix_time::time_duration elapsed = nowUtc - serverStartTimeUtc_; |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1940 |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1941 return elapsed.total_seconds(); |
7547c7dfd017
/tools/metrics-prometheus: added orthanc_last_change and orthanc_up_time_s
Alain Mazy <am@osimis.io>
parents:
5060
diff
changeset
|
1942 } |
224 | 1943 } |