Mercurial > hg > orthanc
annotate OrthancFramework/Sources/DicomParsing/DicomModification.cpp @ 4677:521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 03 Jun 2021 21:06:34 +0200 |
parents | caf963ee3de9 |
children | 2e850edf03d6 |
rev | line source |
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786 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
786 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
786 | 11 * |
12 * This program is distributed in the hope that it will be useful, but | |
13 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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15 * Lesser General Public License for more details. |
786 | 16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
786 | 20 **/ |
21 | |
22 | |
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23 #include "../PrecompiledHeaders.h" |
786 | 24 #include "DicomModification.h" |
25 | |
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26 #include "../Compatibility.h" |
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27 #include "../Logging.h" |
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28 #include "../OrthancException.h" |
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29 #include "../SerializationToolbox.h" |
790 | 30 #include "FromDcmtkBridge.h" |
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31 #include "ITagVisitor.h" |
786 | 32 |
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33 #include <memory> // For std::unique_ptr |
795 | 34 |
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35 |
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36 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2008 = |
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37 "Orthanc " ORTHANC_VERSION " - PS 3.15-2008 Table E.1-1"; |
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38 |
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39 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2017c = |
2314 | 40 "Orthanc " ORTHANC_VERSION " - PS 3.15-2017c Table E.1-1 Basic Profile"; |
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41 |
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42 static const std::string ORTHANC_DEIDENTIFICATION_METHOD_2021b = |
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43 "Orthanc " ORTHANC_VERSION " - PS 3.15-2021b Table E.1-1 Basic Profile"; |
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44 |
786 | 45 namespace Orthanc |
46 { | |
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47 class DicomModification::RelationshipsVisitor : public ITagVisitor |
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48 { |
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49 private: |
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50 DicomModification& that_; |
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51 |
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52 bool IsEnabled(const DicomTag& tag) const |
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53 { |
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54 return (!that_.IsCleared(tag) && |
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55 !that_.IsRemoved(tag) && |
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56 !that_.IsReplaced(tag)); |
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57 } |
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58 |
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59 void RemoveIfEnabled(ParsedDicomFile& dicom, |
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60 const DicomTag& tag) const |
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61 { |
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62 if (IsEnabled(tag)) |
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63 { |
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64 dicom.Remove(tag); |
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65 } |
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66 } |
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67 |
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68 |
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69 public: |
4200 | 70 explicit RelationshipsVisitor(DicomModification& that) : |
71 that_(that) | |
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72 { |
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73 } |
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74 |
3195 | 75 virtual void VisitNotSupported(const std::vector<DicomTag>& parentTags, |
76 const std::vector<size_t>& parentIndexes, | |
77 const DicomTag& tag, | |
78 ValueRepresentation vr) | |
79 { | |
80 } | |
81 | |
82 virtual void VisitEmptySequence(const std::vector<DicomTag>& parentTags, | |
83 const std::vector<size_t>& parentIndexes, | |
84 const DicomTag& tag) | |
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85 { |
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86 } |
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87 |
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88 virtual void VisitBinary(const std::vector<DicomTag>& parentTags, |
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89 const std::vector<size_t>& parentIndexes, |
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90 const DicomTag& tag, |
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91 ValueRepresentation vr, |
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92 const void* data, |
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93 size_t size) |
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94 { |
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95 } |
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96 |
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97 virtual void VisitIntegers(const std::vector<DicomTag>& parentTags, |
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98 const std::vector<size_t>& parentIndexes, |
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99 const DicomTag& tag, |
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100 ValueRepresentation vr, |
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101 const std::vector<int64_t>& values) |
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102 { |
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103 } |
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104 |
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105 virtual void VisitDoubles(const std::vector<DicomTag>& parentTags, |
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106 const std::vector<size_t>& parentIndexes, |
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107 const DicomTag& tag, |
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108 ValueRepresentation vr, |
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109 const std::vector<double>& value) |
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110 { |
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111 } |
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112 |
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113 virtual void VisitAttributes(const std::vector<DicomTag>& parentTags, |
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114 const std::vector<size_t>& parentIndexes, |
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115 const DicomTag& tag, |
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116 const std::vector<DicomTag>& value) |
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117 { |
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118 } |
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119 |
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120 virtual Action VisitString(std::string& newValue, |
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121 const std::vector<DicomTag>& parentTags, |
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122 const std::vector<size_t>& parentIndexes, |
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123 const DicomTag& tag, |
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124 ValueRepresentation vr, |
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125 const std::string& value) |
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126 { |
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127 if (!IsEnabled(tag)) |
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128 { |
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129 return Action_None; |
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130 } |
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131 else if (parentTags.size() == 2 && |
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132 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE && |
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133 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE && |
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134 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID) |
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135 { |
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136 // in RT-STRUCT, this ReferencedSOPInstanceUID is actually referencing a StudyInstanceUID !! |
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137 // (observed in many data sets including: https://wiki.cancerimagingarchive.net/display/Public/Lung+CT+Segmentation+Challenge+2017) |
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138 // tested in test_anonymize_relationships_5 |
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139 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Study); |
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140 return Action_Replace; |
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141 } |
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142 else if (tag == DICOM_TAG_FRAME_OF_REFERENCE_UID || |
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143 tag == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_UID || |
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144 tag == DICOM_TAG_REFERENCED_SOP_INSTANCE_UID || |
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145 tag == DICOM_TAG_RELATED_FRAME_OF_REFERENCE_UID) |
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146 { |
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147 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Instance); |
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148 return Action_Replace; |
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149 } |
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150 else if (parentTags.size() == 1 && |
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151 parentTags[0] == DICOM_TAG_CURRENT_REQUESTED_PROCEDURE_EVIDENCE_SEQUENCE && |
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152 tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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153 { |
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154 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Study); |
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155 return Action_Replace; |
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156 } |
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157 else if (parentTags.size() == 2 && |
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158 parentTags[0] == DICOM_TAG_CURRENT_REQUESTED_PROCEDURE_EVIDENCE_SEQUENCE && |
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159 parentTags[1] == DICOM_TAG_REFERENCED_SERIES_SEQUENCE && |
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160 tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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161 { |
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162 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Series); |
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163 return Action_Replace; |
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164 } |
3513
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165 else if (parentTags.size() == 3 && |
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166 parentTags[0] == DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_SEQUENCE && |
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167 parentTags[1] == DICOM_TAG_RT_REFERENCED_STUDY_SEQUENCE && |
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168 parentTags[2] == DICOM_TAG_RT_REFERENCED_SERIES_SEQUENCE && |
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169 tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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170 { |
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171 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Series); |
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172 return Action_Replace; |
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173 } |
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174 else if (parentTags.size() == 1 && |
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175 parentTags[0] == DICOM_TAG_REFERENCED_SERIES_SEQUENCE && |
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176 tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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177 { |
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178 newValue = that_.MapDicomIdentifier(Toolbox::StripSpaces(value), ResourceType_Series); |
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179 return Action_Replace; |
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180 } |
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181 else |
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182 { |
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183 return Action_None; |
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184 } |
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185 } |
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186 |
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187 void RemoveRelationships(ParsedDicomFile& dicom) const |
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188 { |
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189 // Sequences containing the UID relationships |
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190 RemoveIfEnabled(dicom, DICOM_TAG_REFERENCED_IMAGE_SEQUENCE); |
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191 RemoveIfEnabled(dicom, DICOM_TAG_SOURCE_IMAGE_SEQUENCE); |
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192 |
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193 // Individual tags |
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194 RemoveIfEnabled(dicom, DICOM_TAG_FRAME_OF_REFERENCE_UID); |
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195 |
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196 // The tags below should never occur at the first level of the |
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197 // hierarchy, but remove them anyway |
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198 RemoveIfEnabled(dicom, DICOM_TAG_REFERENCED_FRAME_OF_REFERENCE_UID); |
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199 RemoveIfEnabled(dicom, DICOM_TAG_REFERENCED_SOP_INSTANCE_UID); |
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200 RemoveIfEnabled(dicom, DICOM_TAG_RELATED_FRAME_OF_REFERENCE_UID); |
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201 } |
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202 }; |
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203 |
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204 |
2323 | 205 bool DicomModification::CancelReplacement(const DicomTag& tag) |
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206 { |
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207 Replacements::iterator it = replacements_.find(tag); |
2323 | 208 |
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209 if (it != replacements_.end()) |
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210 { |
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211 delete it->second; |
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212 replacements_.erase(it); |
2323 | 213 return true; |
214 } | |
215 else | |
216 { | |
217 return false; | |
218 } | |
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219 } |
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220 |
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221 |
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222 void DicomModification::ReplaceInternal(const DicomTag& tag, |
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223 const Json::Value& value) |
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224 { |
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225 Replacements::iterator it = replacements_.find(tag); |
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226 |
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227 if (it != replacements_.end()) |
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228 { |
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229 delete it->second; |
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230 it->second = NULL; // In the case of an exception during the clone |
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231 it->second = new Json::Value(value); // Clone |
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232 } |
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233 else |
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234 { |
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235 replacements_[tag] = new Json::Value(value); // Clone |
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236 } |
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237 } |
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238 |
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239 |
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240 void DicomModification::ClearReplacements() |
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241 { |
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242 for (Replacements::iterator it = replacements_.begin(); |
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243 it != replacements_.end(); ++it) |
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244 { |
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245 delete it->second; |
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246 } |
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247 |
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248 replacements_.clear(); |
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249 } |
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250 |
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251 |
1279
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252 void DicomModification::MarkNotOrthancAnonymization() |
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253 { |
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254 Replacements::iterator it = replacements_.find(DICOM_TAG_DEIDENTIFICATION_METHOD); |
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255 |
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256 if (it != replacements_.end() && |
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257 (it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2008 || |
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258 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2017c || |
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259 it->second->asString() == ORTHANC_DEIDENTIFICATION_METHOD_2021b)) |
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260 { |
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261 delete it->second; |
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262 replacements_.erase(it); |
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263 } |
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264 } |
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265 |
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266 void DicomModification::RegisterMappedDicomIdentifier(const std::string& original, |
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267 const std::string& mapped, |
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268 ResourceType level) |
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269 { |
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270 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original)); |
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271 |
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272 if (previous == uidMap_.end()) |
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273 { |
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274 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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275 } |
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276 } |
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277 |
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278 std::string DicomModification::MapDicomIdentifier(const std::string& original, |
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279 ResourceType level) |
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280 { |
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281 std::string mapped; |
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282 |
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283 UidMap::const_iterator previous = uidMap_.find(std::make_pair(level, original)); |
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284 |
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285 if (previous == uidMap_.end()) |
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286 { |
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287 if (identifierGenerator_ == NULL) |
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288 { |
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289 mapped = FromDcmtkBridge::GenerateUniqueIdentifier(level); |
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290 } |
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291 else |
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292 { |
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293 if (!identifierGenerator_->Apply(mapped, original, level, currentSource_)) |
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294 { |
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295 throw OrthancException(ErrorCode_InternalError, |
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296 "Unable to generate an anonymized ID"); |
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297 } |
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298 } |
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299 |
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300 uidMap_.insert(std::make_pair(std::make_pair(level, original), mapped)); |
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301 } |
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302 else |
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303 { |
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304 mapped = previous->second; |
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305 } |
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306 |
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307 return mapped; |
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308 } |
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309 |
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310 |
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311 void DicomModification::MapDicomTags(ParsedDicomFile& dicom, |
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312 ResourceType level) |
786 | 313 { |
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314 std::unique_ptr<DicomTag> tag; |
786 | 315 |
316 switch (level) | |
317 { | |
788 | 318 case ResourceType_Study: |
786 | 319 tag.reset(new DicomTag(DICOM_TAG_STUDY_INSTANCE_UID)); |
320 break; | |
321 | |
788 | 322 case ResourceType_Series: |
786 | 323 tag.reset(new DicomTag(DICOM_TAG_SERIES_INSTANCE_UID)); |
324 break; | |
325 | |
788 | 326 case ResourceType_Instance: |
786 | 327 tag.reset(new DicomTag(DICOM_TAG_SOP_INSTANCE_UID)); |
328 break; | |
329 | |
330 default: | |
331 throw OrthancException(ErrorCode_InternalError); | |
332 } | |
333 | |
334 std::string original; | |
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335 if (!const_cast<const ParsedDicomFile&>(dicom).GetTagValue(original, *tag)) |
786 | 336 { |
337 original = ""; | |
338 } | |
339 | |
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340 std::string mapped = MapDicomIdentifier(Toolbox::StripSpaces(original), level); |
786 | 341 |
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342 dicom.Replace(*tag, mapped, |
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343 false /* don't try and decode data URI scheme for UIDs */, |
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344 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
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345 } |
786 | 346 |
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347 |
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348 DicomModification::DicomModification() : |
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349 removePrivateTags_(false), |
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350 level_(ResourceType_Instance), |
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351 allowManualIdentifiers_(true), |
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352 keepStudyInstanceUid_(false), |
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353 keepSeriesInstanceUid_(false), |
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354 keepSopInstanceUid_(false), |
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355 updateReferencedRelationships_(true), |
2721 | 356 isAnonymization_(false), |
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357 //privateCreator_("PrivateCreator"), |
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358 identifierGenerator_(NULL) |
786 | 359 { |
360 } | |
361 | |
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362 DicomModification::~DicomModification() |
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363 { |
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364 ClearReplacements(); |
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365 } |
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366 |
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367 void DicomModification::Keep(const DicomTag& tag) |
786 | 368 { |
2323 | 369 bool wasRemoved = IsRemoved(tag); |
370 bool wasCleared = IsCleared(tag); | |
371 | |
786 | 372 removals_.erase(tag); |
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373 clearings_.erase(tag); |
2323 | 374 |
375 bool wasReplaced = CancelReplacement(tag); | |
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376 |
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377 if (tag == DICOM_TAG_STUDY_INSTANCE_UID) |
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378 { |
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379 keepStudyInstanceUid_ = true; |
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380 } |
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381 else if (tag == DICOM_TAG_SERIES_INSTANCE_UID) |
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382 { |
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383 keepSeriesInstanceUid_ = true; |
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384 } |
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385 else if (tag == DICOM_TAG_SOP_INSTANCE_UID) |
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386 { |
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387 keepSopInstanceUid_ = true; |
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388 } |
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389 else if (tag.IsPrivate()) |
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390 { |
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391 privateTagsToKeep_.insert(tag); |
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392 } |
2323 | 393 else if (!wasRemoved && |
394 !wasReplaced && | |
395 !wasCleared) | |
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396 { |
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397 LOG(WARNING) << "Marking this tag as to be kept has no effect: " << tag.Format(); |
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398 } |
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399 |
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400 MarkNotOrthancAnonymization(); |
786 | 401 } |
402 | |
403 void DicomModification::Remove(const DicomTag& tag) | |
404 { | |
405 removals_.insert(tag); | |
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406 clearings_.erase(tag); |
2323 | 407 CancelReplacement(tag); |
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408 privateTagsToKeep_.erase(tag); |
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409 |
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410 MarkNotOrthancAnonymization(); |
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411 } |
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412 |
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413 void DicomModification::Clear(const DicomTag& tag) |
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414 { |
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415 removals_.erase(tag); |
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416 clearings_.insert(tag); |
2323 | 417 CancelReplacement(tag); |
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418 privateTagsToKeep_.erase(tag); |
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419 |
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420 MarkNotOrthancAnonymization(); |
786 | 421 } |
422 | |
423 bool DicomModification::IsRemoved(const DicomTag& tag) const | |
424 { | |
425 return removals_.find(tag) != removals_.end(); | |
426 } | |
427 | |
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428 bool DicomModification::IsCleared(const DicomTag& tag) const |
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429 { |
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430 return clearings_.find(tag) != clearings_.end(); |
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431 } |
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432 |
786 | 433 void DicomModification::Replace(const DicomTag& tag, |
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434 const Json::Value& value, |
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435 bool safeForAnonymization) |
786 | 436 { |
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437 clearings_.erase(tag); |
786 | 438 removals_.erase(tag); |
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439 privateTagsToKeep_.erase(tag); |
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440 ReplaceInternal(tag, value); |
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441 |
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442 if (!safeForAnonymization) |
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443 { |
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444 MarkNotOrthancAnonymization(); |
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445 } |
786 | 446 } |
447 | |
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448 |
786 | 449 bool DicomModification::IsReplaced(const DicomTag& tag) const |
450 { | |
451 return replacements_.find(tag) != replacements_.end(); | |
452 } | |
453 | |
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454 const Json::Value& DicomModification::GetReplacement(const DicomTag& tag) const |
786 | 455 { |
456 Replacements::const_iterator it = replacements_.find(tag); | |
457 | |
458 if (it == replacements_.end()) | |
459 { | |
460 throw OrthancException(ErrorCode_InexistentItem); | |
461 } | |
462 else | |
463 { | |
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464 return *it->second; |
786 | 465 } |
466 } | |
467 | |
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468 |
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469 std::string DicomModification::GetReplacementAsString(const DicomTag& tag) const |
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470 { |
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471 const Json::Value& json = GetReplacement(tag); |
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472 |
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473 if (json.type() != Json::stringValue) |
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474 { |
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475 throw OrthancException(ErrorCode_BadParameterType); |
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476 } |
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477 else |
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478 { |
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479 return json.asString(); |
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480 } |
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481 } |
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482 |
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483 |
786 | 484 void DicomModification::SetRemovePrivateTags(bool removed) |
485 { | |
486 removePrivateTags_ = removed; | |
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487 |
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488 if (!removed) |
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489 { |
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490 MarkNotOrthancAnonymization(); |
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491 } |
786 | 492 } |
493 | |
4297 | 494 bool DicomModification::ArePrivateTagsRemoved() const |
495 { | |
496 return removePrivateTags_; | |
497 } | |
498 | |
788 | 499 void DicomModification::SetLevel(ResourceType level) |
786 | 500 { |
501 uidMap_.clear(); | |
502 level_ = level; | |
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503 |
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504 if (level != ResourceType_Patient) |
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505 { |
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506 MarkNotOrthancAnonymization(); |
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507 } |
786 | 508 } |
509 | |
4297 | 510 ResourceType DicomModification::GetLevel() const |
511 { | |
512 return level_; | |
513 } | |
514 | |
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515 |
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516 void DicomModification::SetupAnonymization2008() |
786 | 517 { |
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518 // This is Table E.1-1 from PS 3.15-2008 - DICOM Part 15: Security and System Management Profiles |
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519 // https://raw.githubusercontent.com/jodogne/dicom-specification/master/2008/08_15pu.pdf |
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520 |
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521 removals_.insert(DicomTag(0x0008, 0x0014)); // Instance Creator UID |
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522 //removals_.insert(DicomTag(0x0008, 0x0018)); // SOP Instance UID => set in Apply() |
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523 removals_.insert(DicomTag(0x0008, 0x0050)); // Accession Number |
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524 removals_.insert(DicomTag(0x0008, 0x0080)); // Institution Name |
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525 removals_.insert(DicomTag(0x0008, 0x0081)); // Institution Address |
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526 removals_.insert(DicomTag(0x0008, 0x0090)); // Referring Physician's Name |
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527 removals_.insert(DicomTag(0x0008, 0x0092)); // Referring Physician's Address |
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528 removals_.insert(DicomTag(0x0008, 0x0094)); // Referring Physician's Telephone Numbers |
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529 removals_.insert(DicomTag(0x0008, 0x1010)); // Station Name |
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530 removals_.insert(DicomTag(0x0008, 0x1030)); // Study Description |
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531 removals_.insert(DicomTag(0x0008, 0x103e)); // Series Description |
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532 removals_.insert(DicomTag(0x0008, 0x1040)); // Institutional Department Name |
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533 removals_.insert(DicomTag(0x0008, 0x1048)); // Physician(s) of Record |
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534 removals_.insert(DicomTag(0x0008, 0x1050)); // Performing Physicians' Name |
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535 removals_.insert(DicomTag(0x0008, 0x1060)); // Name of Physician(s) Reading Study |
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536 removals_.insert(DicomTag(0x0008, 0x1070)); // Operators' Name |
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537 removals_.insert(DicomTag(0x0008, 0x1080)); // Admitting Diagnoses Description |
2506
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538 //removals_.insert(DicomTag(0x0008, 0x1155)); // Referenced SOP Instance UID => RelationshipsVisitor |
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539 removals_.insert(DicomTag(0x0008, 0x2111)); // Derivation Description |
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540 //removals_.insert(DicomTag(0x0010, 0x0010)); // Patient's Name => cf. below (*) |
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541 //removals_.insert(DicomTag(0x0010, 0x0020)); // Patient ID => cf. below (*) |
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542 removals_.insert(DicomTag(0x0010, 0x0030)); // Patient's Birth Date |
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543 removals_.insert(DicomTag(0x0010, 0x0032)); // Patient's Birth Time |
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544 removals_.insert(DicomTag(0x0010, 0x0040)); // Patient's Sex |
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545 removals_.insert(DicomTag(0x0010, 0x1000)); // Other Patient Ids |
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546 removals_.insert(DicomTag(0x0010, 0x1001)); // Other Patient Names |
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547 removals_.insert(DicomTag(0x0010, 0x1010)); // Patient's Age |
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548 removals_.insert(DicomTag(0x0010, 0x1020)); // Patient's Size |
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549 removals_.insert(DicomTag(0x0010, 0x1030)); // Patient's Weight |
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550 removals_.insert(DicomTag(0x0010, 0x1090)); // Medical Record Locator |
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551 removals_.insert(DicomTag(0x0010, 0x2160)); // Ethnic Group |
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552 removals_.insert(DicomTag(0x0010, 0x2180)); // Occupation |
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553 removals_.insert(DicomTag(0x0010, 0x21b0)); // Additional Patient's History |
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554 removals_.insert(DicomTag(0x0010, 0x4000)); // Patient Comments |
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555 removals_.insert(DicomTag(0x0018, 0x1000)); // Device Serial Number |
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556 removals_.insert(DicomTag(0x0018, 0x1030)); // Protocol Name |
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557 //removals_.insert(DicomTag(0x0020, 0x000d)); // Study Instance UID => set in Apply() |
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558 //removals_.insert(DicomTag(0x0020, 0x000e)); // Series Instance UID => set in Apply() |
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559 removals_.insert(DicomTag(0x0020, 0x0010)); // Study ID |
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560 //removals_.insert(DicomTag(0x0020, 0x0052)); // Frame of Reference UID => cf. RelationshipsVisitor |
2309
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561 removals_.insert(DicomTag(0x0020, 0x0200)); // Synchronization Frame of Reference UID |
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562 removals_.insert(DicomTag(0x0020, 0x4000)); // Image Comments |
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563 removals_.insert(DicomTag(0x0040, 0x0275)); // Request Attributes Sequence |
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564 removals_.insert(DicomTag(0x0040, 0xa124)); // UID |
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565 removals_.insert(DicomTag(0x0040, 0xa730)); // Content Sequence |
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566 removals_.insert(DicomTag(0x0088, 0x0140)); // Storage Media File-set UID |
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567 //removals_.insert(DicomTag(0x3006, 0x0024)); // Referenced Frame of Reference UID => RelationshipsVisitor |
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568 //removals_.insert(DicomTag(0x3006, 0x00c2)); // Related Frame of Reference UID => RelationshipsVisitor |
786 | 569 |
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570 // Some more removals (from the experience of DICOM files at the CHU of Liege) |
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571 removals_.insert(DicomTag(0x0010, 0x1040)); // Patient's Address |
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572 removals_.insert(DicomTag(0x0032, 0x1032)); // Requesting Physician |
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573 removals_.insert(DicomTag(0x0010, 0x2154)); // PatientTelephoneNumbers |
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574 removals_.insert(DicomTag(0x0010, 0x2000)); // Medical Alerts |
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575 |
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576 // Set the DeidentificationMethod tag |
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577 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2008); |
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578 } |
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579 |
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580 |
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581 void DicomModification::SetupAnonymization2017c() |
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|
582 { |
2313
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583 /** |
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584 * This is Table E.1-1 from PS 3.15-2017c (DICOM Part 15: Security |
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585 * and System Management Profiles), "basic profile" column. It was |
4675
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586 * generated automatically by calling: |
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587 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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588 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2017c/part15.xml" |
2313
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589 **/ |
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590 |
4676
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DicomModification_Anonymization2017c.impl.h
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591 #include "DicomModification_Anonymization2017c.impl.h" |
2313
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592 |
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593 // Set the DeidentificationMethod tag |
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594 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2017c); |
2309
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595 } |
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596 |
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597 |
4677
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598 void DicomModification::SetupAnonymization2021b() |
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599 { |
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600 /** |
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601 * This is Table E.1-1 from PS 3.15-2021b (DICOM Part 15: Security |
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602 * and System Management Profiles), "basic profile" column. It was |
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603 * generated automatically by calling: |
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604 * "../../../OrthancServer/Resources/GenerateAnonymizationProfile.py |
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605 * https://raw.githubusercontent.com/jodogne/dicom-specification/master/2021b/part15.xml" |
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606 * |
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607 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1a |
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608 * http://dicom.nema.org/medical/dicom/2021b/output/chtml/part15/chapter_E.html#table_E.1-1 |
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609 **/ |
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610 |
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611 #include "DicomModification_Anonymization2021b.impl.h" |
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612 |
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613 // Set the DeidentificationMethod tag |
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614 ReplaceInternal(DICOM_TAG_DEIDENTIFICATION_METHOD, ORTHANC_DEIDENTIFICATION_METHOD_2021b); |
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615 } |
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616 |
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617 |
2309
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618 void DicomModification::SetupAnonymization(DicomVersion version) |
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619 { |
2721 | 620 isAnonymization_ = true; |
621 | |
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622 removals_.clear(); |
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623 clearings_.clear(); |
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624 ClearReplacements(); |
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625 removePrivateTags_ = true; |
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626 level_ = ResourceType_Patient; |
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627 uidMap_.clear(); |
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628 privateTagsToKeep_.clear(); |
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629 |
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630 switch (version) |
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631 { |
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632 case DicomVersion_2008: |
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633 SetupAnonymization2008(); |
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634 break; |
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635 |
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636 case DicomVersion_2017c: |
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637 SetupAnonymization2017c(); |
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638 break; |
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639 |
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640 case DicomVersion_2021b: |
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641 SetupAnonymization2021b(); |
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changeset
|
642 break; |
521e39b3f2c0
Fix issue #146 (Update Anonyization to 2019c) - was actually updated to 2021b
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4676
diff
changeset
|
643 |
2309
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
644 default: |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
645 throw OrthancException(ErrorCode_ParameterOutOfRange); |
4dc313b9a20a
Argument "DicomVersion" in URIs "/{...}/{...}/anonymization"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2277
diff
changeset
|
646 } |
786 | 647 |
648 // Set the PatientIdentityRemoved tag | |
1698
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
649 ReplaceInternal(DicomTag(0x0012, 0x0062), "YES"); |
786 | 650 |
651 // (*) Choose a random patient name and ID | |
788 | 652 std::string patientId = FromDcmtkBridge::GenerateUniqueIdentifier(ResourceType_Patient); |
1698
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
653 ReplaceInternal(DICOM_TAG_PATIENT_ID, patientId); |
d78b87f93bcf
DicomModification use Json::Value
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1695
diff
changeset
|
654 ReplaceInternal(DICOM_TAG_PATIENT_NAME, patientId); |
786 | 655 } |
656 | |
657 void DicomModification::Apply(ParsedDicomFile& toModify) | |
658 { | |
659 // Check the request | |
788 | 660 assert(ResourceType_Patient + 1 == ResourceType_Study && |
661 ResourceType_Study + 1 == ResourceType_Series && | |
662 ResourceType_Series + 1 == ResourceType_Instance); | |
786 | 663 |
664 if (IsRemoved(DICOM_TAG_PATIENT_ID) || | |
665 IsRemoved(DICOM_TAG_STUDY_INSTANCE_UID) || | |
666 IsRemoved(DICOM_TAG_SERIES_INSTANCE_UID) || | |
667 IsRemoved(DICOM_TAG_SOP_INSTANCE_UID)) | |
668 { | |
669 throw OrthancException(ErrorCode_BadRequest); | |
670 } | |
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parents:
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diff
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|
671 |
786 | 672 |
1279
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More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
673 // Sanity checks at the patient level |
788 | 674 if (level_ == ResourceType_Patient && !IsReplaced(DICOM_TAG_PATIENT_ID)) |
786 | 675 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
676 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
677 "When modifying a patient, her PatientID is required to be modified"); |
786 | 678 } |
679 | |
1279
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
680 if (!allowManualIdentifiers_) |
1160
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generalization of create-dicom
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parents:
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diff
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|
681 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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parents:
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diff
changeset
|
682 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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diff
changeset
|
683 { |
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taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
684 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
685 "When modifying a patient, the StudyInstanceUID cannot be manually modified"); |
1279
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More flexible /modify and /anonymize for single instance
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parents:
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diff
changeset
|
686 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
687 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
688 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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parents:
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diff
changeset
|
689 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
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parents:
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diff
changeset
|
690 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
691 "When modifying a patient, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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diff
changeset
|
692 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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diff
changeset
|
693 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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parents:
1160
diff
changeset
|
694 if (level_ == ResourceType_Patient && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
695 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
696 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
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parents:
2844
diff
changeset
|
697 "When modifying a patient, the SopInstanceUID cannot be manually modified"); |
1279
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More flexible /modify and /anonymize for single instance
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|
698 } |
1160
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diff
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|
699 } |
80671157d051
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diff
changeset
|
700 |
80671157d051
generalization of create-dicom
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991
diff
changeset
|
701 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
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parents:
1160
diff
changeset
|
702 // Sanity checks at the study level |
1160
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diff
changeset
|
703 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_PATIENT_ID)) |
80671157d051
generalization of create-dicom
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parents:
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diff
changeset
|
704 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
705 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
706 "When modifying a study, the parent PatientID cannot be manually modified"); |
1160
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generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
707 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
708 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
709 if (!allowManualIdentifiers_) |
1160
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generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
710 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
711 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
712 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
713 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
714 "When modifying a study, the SeriesInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
715 } |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
716 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
717 if (level_ == ResourceType_Study && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
718 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
719 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
720 "When modifying a study, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
721 } |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
722 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
723 |
786 | 724 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
725 // Sanity checks at the series level |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
726 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_PATIENT_ID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
727 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
728 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
729 "When modifying a series, the parent PatientID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
730 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
731 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
732 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 733 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
734 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
735 "When modifying a series, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
736 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
737 |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
738 if (!allowManualIdentifiers_) |
1160
80671157d051
generalization of create-dicom
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parents:
991
diff
changeset
|
739 { |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
740 if (level_ == ResourceType_Series && IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
741 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
742 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
743 "When modifying a series, the SopInstanceUID cannot be manually modified"); |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
744 } |
786 | 745 } |
746 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
747 |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
748 // Sanity checks at the instance level |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
749 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_PATIENT_ID)) |
786 | 750 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
751 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
752 "When modifying an instance, the parent PatientID cannot be manually modified"); |
786 | 753 } |
754 | |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
755 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
756 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
757 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
758 "When modifying an instance, the parent StudyInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
759 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
760 |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
761 if (level_ == ResourceType_Instance && IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
762 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
763 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
764 "When modifying an instance, the parent SeriesInstanceUID cannot be manually modified"); |
1160
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
765 } |
80671157d051
generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
991
diff
changeset
|
766 |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
767 // (0) Create a summary of the source file, if a custom generator |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
768 // is provided |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
769 if (identifierGenerator_ != NULL) |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
770 { |
4139
a4f28efdfccf
"maxTagLength" must be explicitly given to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4119
diff
changeset
|
771 toModify.ExtractDicomSummary(currentSource_, ORTHANC_MAXIMUM_TAG_LENGTH); |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
772 } |
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
773 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
774 // (1) Make sure the relationships are updated with the ids that we force too |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
775 // i.e: an RT-STRUCT is referencing its own StudyInstanceUID |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
776 if (isAnonymization_ && updateReferencedRelationships_) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
777 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
778 if (IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
779 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
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diff
changeset
|
780 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
781 std::string replacement = GetReplacementAsString(DICOM_TAG_STUDY_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
782 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_STUDY_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
783 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Study); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
784 } |
2535
d3476d90dcb7
DicomModification::SetDicomIdentifierGenerator()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2521
diff
changeset
|
785 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
786 if (IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
787 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
788 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
789 std::string replacement = GetReplacementAsString(DICOM_TAG_SERIES_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
790 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SERIES_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
791 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Series); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
792 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
793 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
794 if (IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
795 { |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
796 std::string original; |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
797 std::string replacement = GetReplacementAsString(DICOM_TAG_SOP_INSTANCE_UID); |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
798 const_cast<const ParsedDicomFile&>(toModify).GetTagValue(original, DICOM_TAG_SOP_INSTANCE_UID); |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
799 RegisterMappedDicomIdentifier(original, replacement, ResourceType_Instance); |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
800 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
801 } |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
802 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
803 |
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
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parents:
3344
diff
changeset
|
804 // (2) Remove the private tags, if need be |
786 | 805 if (removePrivateTags_) |
806 { | |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
807 toModify.RemovePrivateTags(privateTagsToKeep_); |
786 | 808 } |
809 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
810 // (3) Clear the tags specified by the user |
2310
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
811 for (SetOfTags::const_iterator it = clearings_.begin(); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
812 it != clearings_.end(); ++it) |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
813 { |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
814 toModify.Clear(*it, true /* only clear if the tag exists in the original file */); |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
815 } |
b7fba68747f6
DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2309
diff
changeset
|
816 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
817 // (4) Remove the tags specified by the user |
991
2f76b92addd4
keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
916
diff
changeset
|
818 for (SetOfTags::const_iterator it = removals_.begin(); |
786 | 819 it != removals_.end(); ++it) |
820 { | |
821 toModify.Remove(*it); | |
822 } | |
823 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
824 // (5) Replace the tags |
786 | 825 for (Replacements::const_iterator it = replacements_.begin(); |
826 it != replacements_.end(); ++it) | |
827 { | |
3691
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
828 toModify.Replace(it->first, *it->second, true /* decode data URI scheme */, |
4922bdd046dd
Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
829 DicomReplaceMode_InsertIfAbsent, privateCreator_); |
786 | 830 } |
831 | |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
832 // (6) Update the DICOM identifiers |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
833 if (level_ <= ResourceType_Study && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
834 !IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) |
786 | 835 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
836 if (keepStudyInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
837 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
838 LOG(WARNING) << "Modifying a study while keeping its original StudyInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
839 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
840 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
841 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
842 MapDicomTags(toModify, ResourceType_Study); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
843 } |
786 | 844 } |
845 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
846 if (level_ <= ResourceType_Series && |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
847 !IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) |
786 | 848 { |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
849 if (keepSeriesInstanceUid_) |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
850 { |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
851 LOG(WARNING) << "Modifying a series while keeping its original SeriesInstanceUID: This should be avoided!"; |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
852 } |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
853 else |
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
854 { |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
855 MapDicomTags(toModify, ResourceType_Series); |
2194
3b40ca7470cc
"Keep" option for modifications to keep original DICOM identifiers (advanced feature)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1982
diff
changeset
|
856 } |
786 | 857 } |
858 | |
1279
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
859 if (level_ <= ResourceType_Instance && // Always true |
7f3a65e84d4b
More flexible /modify and /anonymize for single instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1160
diff
changeset
|
860 !IsReplaced(DICOM_TAG_SOP_INSTANCE_UID)) |
786 | 861 { |
3860
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
862 if (keepSopInstanceUid_) |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
863 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
864 LOG(WARNING) << "Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!"; |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
865 } |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
866 else |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
867 { |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
868 MapDicomTags(toModify, ResourceType_Instance); |
9ccbbd55bc23
allow Keeping the SOPInstanceUID in /instances/../modify
Alain Mazy <alain@mazy.be>
parents:
3712
diff
changeset
|
869 } |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
870 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
871 |
3513
7db879b014ff
Fix lost relationships between CT and RT-STRUCT during anonymization
amazy
parents:
3344
diff
changeset
|
872 // (7) Update the "referenced" relationships in the case of an anonymization |
2721 | 873 if (isAnonymization_) |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
874 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
875 RelationshipsVisitor visitor(*this); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
876 |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
877 if (updateReferencedRelationships_) |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
878 { |
4273
0034f855c023
tuning log categories from command-line, and binary compat with orthanc framework 1.7.2
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4268
diff
changeset
|
879 const_cast<const ParsedDicomFile&>(toModify).Apply(visitor); |
2506
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
880 } |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
881 else |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
882 { |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
883 visitor.RemoveRelationships(toModify); |
51b91ead6c38
Preservation of UID relationships while anonymizing
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
884 } |
786 | 885 } |
886 } | |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
887 |
4297 | 888 void DicomModification::SetAllowManualIdentifiers(bool check) |
889 { | |
890 allowManualIdentifiers_ = check; | |
891 } | |
892 | |
893 bool DicomModification::AreAllowManualIdentifiers() const | |
894 { | |
895 return allowManualIdentifiers_; | |
896 } | |
897 | |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
898 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
899 static bool IsDatabaseKey(const DicomTag& tag) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
900 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
901 return (tag == DICOM_TAG_PATIENT_ID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
902 tag == DICOM_TAG_STUDY_INSTANCE_UID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
903 tag == DICOM_TAG_SERIES_INSTANCE_UID || |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
904 tag == DICOM_TAG_SOP_INSTANCE_UID); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
905 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
906 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
907 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
908 static void ParseListOfTags(DicomModification& target, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
909 const Json::Value& query, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
910 DicomModification::TagOperation operation, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
911 bool force) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
912 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
913 if (!query.isArray()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
914 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
915 throw OrthancException(ErrorCode_BadRequest); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
916 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
917 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
918 for (Json::Value::ArrayIndex i = 0; i < query.size(); i++) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
919 { |
2844
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
920 if (query[i].type() != Json::stringValue) |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
921 { |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
922 throw OrthancException(ErrorCode_BadRequest); |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
923 } |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2721
diff
changeset
|
924 |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
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diff
changeset
|
925 std::string name = query[i].asString(); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
926 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
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diff
changeset
|
927 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
928 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
929 if (!force && IsDatabaseKey(tag)) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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2506
diff
changeset
|
930 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
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2844
diff
changeset
|
931 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
932 "Marking tag \"" + name + "\" as to be " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
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2844
diff
changeset
|
933 (operation == DicomModification::TagOperation_Keep ? "kept" : "removed") + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
934 " requires the \"Force\" option to be set to true"); |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
935 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
936 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
937 switch (operation) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
938 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
939 case DicomModification::TagOperation_Keep: |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
940 target.Keep(tag); |
4313
91554aecff9a
removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
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4297
diff
changeset
|
941 LOG(TRACE) << "Keep: " << name << " (" << tag.Format() << ")"; |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
942 break; |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
943 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
944 case DicomModification::TagOperation_Remove: |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
945 target.Remove(tag); |
4313
91554aecff9a
removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
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4297
diff
changeset
|
946 LOG(TRACE) << "Remove: " << name << " (" << tag.Format() << ")"; |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
947 break; |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
948 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
949 default: |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
950 throw OrthancException(ErrorCode_InternalError); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
951 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
952 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
953 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
954 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
955 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
956 static void ParseReplacements(DicomModification& target, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
957 const Json::Value& replacements, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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2506
diff
changeset
|
958 bool force) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
959 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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2506
diff
changeset
|
960 if (!replacements.isObject()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
961 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
2506
diff
changeset
|
962 throw OrthancException(ErrorCode_BadRequest); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
963 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
964 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
965 Json::Value::Members members = replacements.getMemberNames(); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
966 for (size_t i = 0; i < members.size(); i++) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
967 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
968 const std::string& name = members[i]; |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
969 const Json::Value& value = replacements[name]; |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
970 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
971 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
972 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
973 if (!force && IsDatabaseKey(tag)) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
974 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
975 throw OrthancException(ErrorCode_BadRequest, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
976 "Marking tag \"" + name + "\" as to be replaced " + |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
977 "requires the \"Force\" option to be set to true"); |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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2506
diff
changeset
|
978 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
979 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
980 target.Replace(tag, value, false); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
981 |
4313
91554aecff9a
removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4297
diff
changeset
|
982 LOG(TRACE) << "Replace: " << name << " (" << tag.Format() |
91554aecff9a
removed a friend method for better abi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4297
diff
changeset
|
983 << ") == " << value.toStyledString(); |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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2506
diff
changeset
|
984 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
985 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
986 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
987 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
988 static bool GetBooleanValue(const std::string& member, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
989 const Json::Value& json, |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
2506
diff
changeset
|
990 bool defaultValue) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
991 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
992 if (!json.isMember(member)) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
993 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
994 return defaultValue; |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
995 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
996 else if (json[member].type() == Json::booleanValue) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
997 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
998 return json[member].asBool(); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
999 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1000 else |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1001 { |
2954
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1002 throw OrthancException(ErrorCode_BadFileFormat, |
d924f9bb61cc
taking advantage of details in OrthancException
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
1003 "Member \"" + member + "\" should be a Boolean value"); |
2519
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
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2506
diff
changeset
|
1004 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1005 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1006 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2506
diff
changeset
|
1007 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
2506
diff
changeset
|
1008 void DicomModification::ParseModifyRequest(const Json::Value& request) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1009 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1010 if (!request.isObject()) |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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parents:
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diff
changeset
|
1011 { |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1012 throw OrthancException(ErrorCode_BadFileFormat); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1013 } |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1014 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1015 bool force = GetBooleanValue("Force", request, false); |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1016 |
2e6b7862ccf2
ParseAnonymizationRequest/ParseModifyRequest now in DicomModification
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diff
changeset
|
1017 if (GetBooleanValue("RemovePrivateTags", request, false)) |
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1018 { |
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1019 SetRemovePrivateTags(true); |
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1020 } |
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1021 |
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1022 if (request.isMember("Remove")) |
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1023 { |
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1024 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1025 } |
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1026 |
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1027 if (request.isMember("Replace")) |
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1028 { |
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1029 ParseReplacements(*this, request["Replace"], force); |
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1030 } |
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1031 |
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1032 // The "Keep" operation only makes sense for the tags |
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1033 // StudyInstanceUID, SeriesInstanceUID and SOPInstanceUID. Avoid |
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1034 // this feature as much as possible, as this breaks the DICOM |
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1035 // model of the real world, except if you know exactly what |
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1036 // you're doing! |
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1037 if (request.isMember("Keep")) |
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1038 { |
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1039 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1040 } |
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1041 |
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1042 // New in Orthanc 1.6.0 |
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1043 if (request.isMember("PrivateCreator")) |
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1044 { |
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1045 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1046 } |
2519
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1047 } |
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1048 |
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1049 |
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1050 void DicomModification::ParseAnonymizationRequest(bool& patientNameReplaced, |
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1051 const Json::Value& request) |
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1052 { |
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1053 if (!request.isObject()) |
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1054 { |
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1055 throw OrthancException(ErrorCode_BadFileFormat); |
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1056 } |
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1057 |
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1058 bool force = GetBooleanValue("Force", request, false); |
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1059 |
4677
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1060 // DicomVersion version = DicomVersion_2008; // For Orthanc <= 1.2.0 |
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1061 // DicomVersion version = DicomVersion_2017c; // For Orthanc between 1.3.0 and 1.9.3 |
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1062 DicomVersion version = DicomVersion_2021b; // For Orthanc >= 1.9.4 |
2519
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1063 if (request.isMember("DicomVersion")) |
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1064 { |
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1065 if (request["DicomVersion"].type() != Json::stringValue) |
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1066 { |
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1067 throw OrthancException(ErrorCode_BadFileFormat); |
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1068 } |
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1069 else |
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1070 { |
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1071 version = StringToDicomVersion(request["DicomVersion"].asString()); |
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1072 } |
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1073 } |
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1074 |
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1075 SetupAnonymization(version); |
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1076 |
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1077 std::string patientName = GetReplacementAsString(DICOM_TAG_PATIENT_NAME); |
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1078 |
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1079 if (GetBooleanValue("KeepPrivateTags", request, false)) |
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1080 { |
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1081 SetRemovePrivateTags(false); |
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1082 } |
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1083 |
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1084 if (request.isMember("Remove")) |
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1085 { |
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1086 ParseListOfTags(*this, request["Remove"], TagOperation_Remove, force); |
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1087 } |
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1088 |
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1089 if (request.isMember("Replace")) |
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1090 { |
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1091 ParseReplacements(*this, request["Replace"], force); |
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1092 } |
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1093 |
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1094 if (request.isMember("Keep")) |
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1095 { |
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1096 ParseListOfTags(*this, request["Keep"], TagOperation_Keep, force); |
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1097 } |
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1098 |
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1099 patientNameReplaced = (IsReplaced(DICOM_TAG_PATIENT_NAME) && |
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1100 GetReplacement(DICOM_TAG_PATIENT_NAME) == patientName); |
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1101 |
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1102 // New in Orthanc 1.6.0 |
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1103 if (request.isMember("PrivateCreator")) |
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1104 { |
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1105 privateCreator_ = SerializationToolbox::ReadString(request, "PrivateCreator"); |
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1106 } |
2519
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1107 } |
2616
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1108 |
4297 | 1109 void DicomModification::SetDicomIdentifierGenerator(DicomModification::IDicomIdentifierGenerator &generator) |
1110 { | |
1111 identifierGenerator_ = &generator; | |
1112 } | |
1113 | |
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1114 |
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1115 |
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1116 |
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1117 static const char* REMOVE_PRIVATE_TAGS = "RemovePrivateTags"; |
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1118 static const char* LEVEL = "Level"; |
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1119 static const char* ALLOW_MANUAL_IDENTIFIERS = "AllowManualIdentifiers"; |
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1120 static const char* KEEP_STUDY_INSTANCE_UID = "KeepStudyInstanceUID"; |
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1121 static const char* KEEP_SERIES_INSTANCE_UID = "KeepSeriesInstanceUID"; |
3860
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1122 static const char* KEEP_SOP_INSTANCE_UID = "KeepSOPInstanceUID"; |
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1123 static const char* UPDATE_REFERENCED_RELATIONSHIPS = "UpdateReferencedRelationships"; |
2721 | 1124 static const char* IS_ANONYMIZATION = "IsAnonymization"; |
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1125 static const char* REMOVALS = "Removals"; |
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1126 static const char* CLEARINGS = "Clearings"; |
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1127 static const char* PRIVATE_TAGS_TO_KEEP = "PrivateTagsToKeep"; |
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1128 static const char* REPLACEMENTS = "Replacements"; |
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1129 static const char* MAP_PATIENTS = "MapPatients"; |
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1130 static const char* MAP_STUDIES = "MapStudies"; |
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1131 static const char* MAP_SERIES = "MapSeries"; |
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1132 static const char* MAP_INSTANCES = "MapInstances"; |
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1133 static const char* PRIVATE_CREATOR = "PrivateCreator"; // New in Orthanc 1.6.0 |
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1134 |
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1135 void DicomModification::Serialize(Json::Value& value) const |
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1136 { |
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1137 if (identifierGenerator_ != NULL) |
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1138 { |
2954
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1139 throw OrthancException(ErrorCode_InternalError, |
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1140 "Cannot serialize a DicomModification with a custom identifier generator"); |
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1141 } |
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1142 |
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1143 value = Json::objectValue; |
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1144 value[REMOVE_PRIVATE_TAGS] = removePrivateTags_; |
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1145 value[LEVEL] = EnumerationToString(level_); |
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1146 value[ALLOW_MANUAL_IDENTIFIERS] = allowManualIdentifiers_; |
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1147 value[KEEP_STUDY_INSTANCE_UID] = keepStudyInstanceUid_; |
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1148 value[KEEP_SERIES_INSTANCE_UID] = keepSeriesInstanceUid_; |
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1149 value[KEEP_SOP_INSTANCE_UID] = keepSopInstanceUid_; |
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1150 value[UPDATE_REFERENCED_RELATIONSHIPS] = updateReferencedRelationships_; |
2721 | 1151 value[IS_ANONYMIZATION] = isAnonymization_; |
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1152 value[PRIVATE_CREATOR] = privateCreator_; |
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1153 |
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1154 SerializationToolbox::WriteSetOfTags(value, removals_, REMOVALS); |
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1155 SerializationToolbox::WriteSetOfTags(value, clearings_, CLEARINGS); |
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1156 SerializationToolbox::WriteSetOfTags(value, privateTagsToKeep_, PRIVATE_TAGS_TO_KEEP); |
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1157 |
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1158 Json::Value& tmp = value[REPLACEMENTS]; |
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1159 |
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1160 tmp = Json::objectValue; |
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1161 |
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1162 for (Replacements::const_iterator it = replacements_.begin(); |
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1163 it != replacements_.end(); ++it) |
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1164 { |
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1165 assert(it->second != NULL); |
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1166 tmp[it->first.Format()] = *it->second; |
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1167 } |
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1168 |
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1169 Json::Value& mapPatients = value[MAP_PATIENTS]; |
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1170 Json::Value& mapStudies = value[MAP_STUDIES]; |
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1171 Json::Value& mapSeries = value[MAP_SERIES]; |
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1172 Json::Value& mapInstances = value[MAP_INSTANCES]; |
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1173 |
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1174 mapPatients = Json::objectValue; |
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1175 mapStudies = Json::objectValue; |
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1176 mapSeries = Json::objectValue; |
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1177 mapInstances = Json::objectValue; |
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1178 |
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1179 for (UidMap::const_iterator it = uidMap_.begin(); it != uidMap_.end(); ++it) |
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1180 { |
4200 | 1181 Json::Value* tmp2 = NULL; |
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1182 |
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1183 switch (it->first.first) |
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1184 { |
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1185 case ResourceType_Patient: |
4200 | 1186 tmp2 = &mapPatients; |
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1187 break; |
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1188 |
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1189 case ResourceType_Study: |
4200 | 1190 tmp2 = &mapStudies; |
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1191 break; |
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1192 |
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1193 case ResourceType_Series: |
4200 | 1194 tmp2 = &mapSeries; |
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1195 break; |
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1196 |
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1197 case ResourceType_Instance: |
4200 | 1198 tmp2 = &mapInstances; |
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1199 break; |
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1200 |
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1201 default: |
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1202 throw OrthancException(ErrorCode_InternalError); |
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1203 } |
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1204 |
4200 | 1205 assert(tmp2 != NULL); |
1206 (*tmp2) [it->first.second] = it->second; | |
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1207 } |
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1208 } |
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1209 |
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1210 void DicomModification::UnserializeUidMap(ResourceType level, |
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1211 const Json::Value& serialized, |
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1212 const char* field) |
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1213 { |
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1214 if (!serialized.isMember(field) || |
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1215 serialized[field].type() != Json::objectValue) |
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1216 { |
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1217 throw OrthancException(ErrorCode_BadFileFormat); |
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1218 } |
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1219 |
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1220 Json::Value::Members names = serialized[field].getMemberNames(); |
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1221 |
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1222 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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1223 { |
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1224 const Json::Value& value = serialized[field][*it]; |
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1225 |
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1226 if (value.type() != Json::stringValue) |
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1227 { |
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1228 throw OrthancException(ErrorCode_BadFileFormat); |
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1229 } |
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1230 else |
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1231 { |
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1232 uidMap_[std::make_pair(level, *it)] = value.asString(); |
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1233 } |
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1234 } |
2655 | 1235 } |
1236 | |
1237 | |
2666
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1238 DicomModification::DicomModification(const Json::Value& serialized) : |
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1239 identifierGenerator_(NULL) |
2655 | 1240 { |
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1241 removePrivateTags_ = SerializationToolbox::ReadBoolean(serialized, REMOVE_PRIVATE_TAGS); |
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1242 level_ = StringToResourceType(SerializationToolbox::ReadString(serialized, LEVEL).c_str()); |
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1243 allowManualIdentifiers_ = SerializationToolbox::ReadBoolean(serialized, ALLOW_MANUAL_IDENTIFIERS); |
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1244 keepStudyInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_STUDY_INSTANCE_UID); |
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1245 keepSeriesInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SERIES_INSTANCE_UID); |
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1246 keepSopInstanceUid_ = SerializationToolbox::ReadBoolean(serialized, KEEP_SOP_INSTANCE_UID); |
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1247 updateReferencedRelationships_ = SerializationToolbox::ReadBoolean |
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1248 (serialized, UPDATE_REFERENCED_RELATIONSHIPS); |
2721 | 1249 isAnonymization_ = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION); |
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1250 |
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1251 if (serialized.isMember(PRIVATE_CREATOR)) |
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1252 { |
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1253 privateCreator_ = SerializationToolbox::ReadString(serialized, PRIVATE_CREATOR); |
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1254 } |
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1255 |
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1256 SerializationToolbox::ReadSetOfTags(removals_, serialized, REMOVALS); |
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1257 SerializationToolbox::ReadSetOfTags(clearings_, serialized, CLEARINGS); |
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1258 SerializationToolbox::ReadSetOfTags(privateTagsToKeep_, serialized, PRIVATE_TAGS_TO_KEEP); |
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1259 |
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1260 if (!serialized.isMember(REPLACEMENTS) || |
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1261 serialized[REPLACEMENTS].type() != Json::objectValue) |
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1262 { |
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1263 throw OrthancException(ErrorCode_BadFileFormat); |
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1264 } |
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1265 |
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1266 Json::Value::Members names = serialized[REPLACEMENTS].getMemberNames(); |
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1267 |
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1268 for (Json::Value::Members::const_iterator it = names.begin(); it != names.end(); ++it) |
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1269 { |
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1270 DicomTag tag(0, 0); |
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1271 if (!DicomTag::ParseHexadecimal(tag, it->c_str())) |
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1272 { |
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1273 throw OrthancException(ErrorCode_BadFileFormat); |
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1274 } |
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1275 else |
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1276 { |
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1277 const Json::Value& value = serialized[REPLACEMENTS][*it]; |
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1278 replacements_.insert(std::make_pair(tag, new Json::Value(value))); |
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1279 } |
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1280 } |
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1281 |
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1282 UnserializeUidMap(ResourceType_Patient, serialized, MAP_PATIENTS); |
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1283 UnserializeUidMap(ResourceType_Study, serialized, MAP_STUDIES); |
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1284 UnserializeUidMap(ResourceType_Series, serialized, MAP_SERIES); |
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1285 UnserializeUidMap(ResourceType_Instance, serialized, MAP_INSTANCES); |
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1286 } |
4297 | 1287 |
1288 | |
1289 void DicomModification::SetPrivateCreator(const std::string &privateCreator) | |
1290 { | |
1291 privateCreator_ = privateCreator; | |
1292 } | |
1293 | |
1294 const std::string &DicomModification::GetPrivateCreator() const | |
1295 { | |
1296 return privateCreator_; | |
1297 } | |
786 | 1298 } |