Mercurial > hg > orthanc

annotate OrthancServer/OrthancMoveRequestHandler.cpp @ 3829:4fde7933e504 transcoding

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integration mainline->transcoding
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 10 Apr 2020 16:36:02 +0200
parents 4fc24b69446a
children 9973d10bc5c4
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "PrecompiledHeadersServer.h"
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35 #include "OrthancMoveRequestHandler.h"
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36
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37 #include "../../Core/DicomParsing/FromDcmtkBridge.h"
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38 #include "../Core/DicomFormat/DicomArray.h"
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39 #include "../Core/Logging.h"
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40 #include "../Core/MetricsRegistry.h"
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41 #include "OrthancConfiguration.h"
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42 #include "ServerContext.h"
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43 #include "ServerJobs/DicomModalityStoreJob.h"
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44
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45
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46 namespace Orthanc
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47 {
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48 namespace
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49 {
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50 // Anonymous namespace to avoid clashes between compilation modules
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51
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52 class SynchronousMove : public IMoveRequestIterator
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53 {
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54 private:
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55 ServerContext& context_;
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56 const std::string& localAet_;
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57 std::vector<std::string> instances_;
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58 size_t position_;
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59 RemoteModalityParameters remote_;
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60 std::string originatorAet_;
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61 uint16_t originatorId_;
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62 std::unique_ptr<DicomUserConnection> connection_;
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63
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64 public:
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65 SynchronousMove(ServerContext& context,
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66 const std::string& targetAet,
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67 const std::vector<std::string>& publicIds,
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68 const std::string& originatorAet,
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69 uint16_t originatorId) :
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70 context_(context),
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71 localAet_(context.GetDefaultLocalApplicationEntityTitle()),
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72 position_(0),
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73 originatorAet_(originatorAet),
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74 originatorId_(originatorId)
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75 {
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76 {
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77 OrthancConfiguration::ReaderLock lock;
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78 remote_ = lock.GetConfiguration().GetModalityUsingAet(targetAet);
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79 }
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81 for (size_t i = 0; i < publicIds.size(); i++)
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82 {
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83 LOG(INFO) << "Sending resource " << publicIds[i] << " to modality \""
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84 << targetAet << "\" in synchronous mode";
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86 std::list<std::string> tmp;
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87 context_.GetIndex().GetChildInstances(tmp, publicIds[i]);
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89 instances_.reserve(tmp.size());
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90 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it)
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91 {
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92 instances_.push_back(*it);
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93 }
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94 }
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95 }
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96
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97 virtual unsigned int GetSubOperationCount() const
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98 {
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99 return instances_.size();
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100 }
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101
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102 virtual Status DoNext()
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103 {
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104 if (position_ >= instances_.size())
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105 {
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106 return Status_Failure;
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107 }
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108
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109 const std::string& id = instances_[position_++];
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110
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111 std::string dicom;
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112 context_.ReadDicom(dicom, id);
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113
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114 if (connection_.get() == NULL)
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115 {
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116 connection_.reset(new DicomUserConnection(localAet_, remote_));
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117 }
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118
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119 std::string sopClassUid, sopInstanceUid; // Unused
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120 connection_->Store(sopClassUid, sopInstanceUid, dicom, originatorAet_, originatorId_);
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121
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122 return Status_Success;
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123 }
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124 };
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125
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126
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127 class AsynchronousMove : public IMoveRequestIterator
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128 {
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129 private:
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130 ServerContext& context_;
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131 std::unique_ptr<DicomModalityStoreJob> job_;
2a170a8f1faf replacing std::auto_ptr by std::unique_ptr
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132 size_t position_;
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diff changeset
133 size_t countInstances_;
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diff changeset
134
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135 public:
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136 AsynchronousMove(ServerContext& context,
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diff changeset
137 const std::string& targetAet,
3301
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diff changeset
138 const std::vector<std::string>& publicIds,
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diff changeset
139 const std::string& originatorAet,
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diff changeset
140 uint16_t originatorId) :
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diff changeset
141 context_(context),
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142 job_(new DicomModalityStoreJob(context)),
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143 position_(0)
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diff changeset
144 {
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diff changeset
145 job_->SetDescription("C-MOVE");
3700
5cbbf14e516b Fix issue #103 ("queries/.../retrieve" API returns HTTP code 200 even on server errors)
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diff changeset
146 //job_->SetPermissive(true); // This was the behavior of Orthanc < 1.6.0
5cbbf14e516b Fix issue #103 ("queries/.../retrieve" API returns HTTP code 200 even on server errors)
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diff changeset
147 job_->SetPermissive(false);
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diff changeset
148 job_->SetLocalAet(context.GetDefaultLocalApplicationEntityTitle());
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diff changeset
149
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diff changeset
150 {
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diff changeset
151 OrthancConfiguration::ReaderLock lock;
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diff changeset
152 job_->SetRemoteModality(lock.GetConfiguration().GetModalityUsingAet(targetAet));
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diff changeset
153 }
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diff changeset
154
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155 if (originatorId != 0)
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diff changeset
156 {
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157 job_->SetMoveOriginator(originatorAet, originatorId);
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158 }
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159
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diff changeset
160 for (size_t i = 0; i < publicIds.size(); i++)
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
161 {
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
162 LOG(INFO) << "Sending resource " << publicIds[i] << " to modality \""
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
163 << targetAet << "\" in asynchronous mode";
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
164
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diff changeset
165 std::list<std::string> tmp;
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
166 context_.GetIndex().GetChildInstances(tmp, publicIds[i]);
3157
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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parents: 3097
diff changeset
167
3301
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
168 countInstances_ = tmp.size();
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
169
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
170 job_->Reserve(job_->GetCommandsCount() + tmp.size());
2624
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diff changeset
171
3301
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diff changeset
172 for (std::list<std::string>::iterator it = tmp.begin(); it != tmp.end(); ++it)
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
173 {
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
174 job_->AddInstance(*it);
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
175 }
2624
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diff changeset
176 }
714dcddeb65f asynchronous c-movoe
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diff changeset
177 }
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diff changeset
178
714dcddeb65f asynchronous c-movoe
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diff changeset
179 virtual unsigned int GetSubOperationCount() const
714dcddeb65f asynchronous c-movoe
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diff changeset
180 {
3157
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
181 return countInstances_;
2624
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diff changeset
182 }
714dcddeb65f asynchronous c-movoe
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diff changeset
183
714dcddeb65f asynchronous c-movoe
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diff changeset
184 virtual Status DoNext()
714dcddeb65f asynchronous c-movoe
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diff changeset
185 {
3157
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3097
diff changeset
186 if (position_ >= countInstances_)
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
187 {
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
188 return Status_Failure;
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
189 }
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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parents: 3097
diff changeset
190
2624
714dcddeb65f asynchronous c-movoe
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diff changeset
191 if (position_ == 0)
714dcddeb65f asynchronous c-movoe
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diff changeset
192 {
714dcddeb65f asynchronous c-movoe
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diff changeset
193 context_.GetJobsEngine().GetRegistry().Submit(job_.release(), 0 /* priority */);
714dcddeb65f asynchronous c-movoe
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diff changeset
194 }
3157
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
195
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
196 position_ ++;
8a9eb767280c Fix issue #128 (Asynchronous C-MOVE: invalid number of remaining sub-operations)
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diff changeset
197 return Status_Success;
2624
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diff changeset
198 }
714dcddeb65f asynchronous c-movoe
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diff changeset
199 };
619
70d0f27e5bd3 refactoring
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parents:
diff changeset
200 }
70d0f27e5bd3 refactoring
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parents:
diff changeset
201
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202
3301
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
203 bool OrthancMoveRequestHandler::LookupIdentifiers(std::vector<std::string>& publicIds,
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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parents: 3174
diff changeset
204 ResourceType level,
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
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diff changeset
205 const DicomMap& input)
619
70d0f27e5bd3 refactoring
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parents:
diff changeset
206 {
1724
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
207 DicomTag tag(0, 0); // Dummy initialization
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
208
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
209 switch (level)
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
210 {
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
211 case ResourceType_Patient:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
212 tag = DICOM_TAG_PATIENT_ID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
213 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
214
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
215 case ResourceType_Study:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
216 tag = (input.HasTag(DICOM_TAG_ACCESSION_NUMBER) ?
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
217 DICOM_TAG_ACCESSION_NUMBER : DICOM_TAG_STUDY_INSTANCE_UID);
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
218 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
219
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
220 case ResourceType_Series:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
221 tag = DICOM_TAG_SERIES_INSTANCE_UID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
222 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
223
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
224 case ResourceType_Instance:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
225 tag = DICOM_TAG_SOP_INSTANCE_UID;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
226 break;
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1721
diff changeset
227
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
228 default:
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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diff changeset
229 throw OrthancException(ErrorCode_ParameterOutOfRange);
7e0b5e413c7c C-Move SCP for studies using AccessionNumber tag
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parents: 1721
diff changeset
230 }
1721
3bcb01028107 removed another flavor of ServerIndex::LookupIdentifier
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1573
diff changeset
231
619
70d0f27e5bd3 refactoring
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parents:
diff changeset
232 if (!input.HasTag(tag))
70d0f27e5bd3 refactoring
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parents:
diff changeset
233 {
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
234 return false;
70d0f27e5bd3 refactoring
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parents:
diff changeset
235 }
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
236
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1724
diff changeset
237 const DicomValue& value = input.GetValue(tag);
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1724
diff changeset
238 if (value.IsNull() ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1724
diff changeset
239 value.IsBinary())
ec66a16aa398 removal of DicomStringValue and DicomNullValue
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parents: 1724
diff changeset
240 {
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1724
diff changeset
241 return false;
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1724
diff changeset
242 }
619
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
243 else
70d0f27e5bd3 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
244 {
3301
6ce10c3b1eb7 Fix issue #131 (C-MOVE failure due to duplicate StudyInstanceUID in the database)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3174
diff changeset
245 const std::string& content = value.GetContent();
3697
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
246
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
247 /**
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
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diff changeset
248 * This tokenization fixes issue 154 ("Matching against list of
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
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diff changeset
249 * UID-s by C-MOVE").
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
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parents: 3640
diff changeset
250 * https://bitbucket.org/sjodogne/orthanc/issues/154/
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
251 **/
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
252
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
253 std::vector<std::string> tokens;
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
254 Toolbox::TokenizeString(tokens, content, '\\');
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
255 for (size_t i = 0; i < tokens.size(); i++)
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
256 {
5331918773e7 Fix issue #154 (Matching against list of UID-s by C-MOVE)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
257 std::vector<std::string> matches;
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258 context_.GetIndex().LookupIdentifierExact(matches, level, tag, tokens[i]);
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259
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260 // Concatenate "publicIds" with "matches"
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261 publicIds.insert(publicIds.end(), matches.begin(), matches.end());
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262 }
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263
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264 return true;
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265 }
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266 }
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267
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268
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269 static IMoveRequestIterator* CreateIterator(ServerContext& context,
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270 const std::string& targetAet,
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271 const std::vector<std::string>& publicIds,
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272 const std::string& originatorAet,
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273 uint16_t originatorId)
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274 {
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275 if (publicIds.empty())
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276 {
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277 throw OrthancException(ErrorCode_BadRequest,
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278 "C-MOVE request matching no resource stored in Orthanc");
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279 }
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280
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281 bool synchronous;
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282
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283 {
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284 OrthancConfiguration::ReaderLock lock;
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285 synchronous = lock.GetConfiguration().GetBooleanParameter("SynchronousCMove", true);
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286 }
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287
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288 if (synchronous)
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289 {
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290 return new SynchronousMove(context, targetAet, publicIds, originatorAet, originatorId);
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291 }
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292 else
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293 {
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294 return new AsynchronousMove(context, targetAet, publicIds, originatorAet, originatorId);
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295 }
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296 }
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297
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298
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299 IMoveRequestIterator* OrthancMoveRequestHandler::Handle(const std::string& targetAet,
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300 const DicomMap& input,
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301 const std::string& originatorIp,
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302 const std::string& originatorAet,
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303 const std::string& calledAet,
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304 uint16_t originatorId)
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305 {
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306 MetricsRegistry::Timer timer(context_.GetMetricsRegistry(), "orthanc_move_scp_duration_ms");
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307
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308 LOG(WARNING) << "Move-SCU request received for AET \"" << targetAet << "\"";
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309
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310 {
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311 DicomArray query(input);
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312 for (size_t i = 0; i < query.GetSize(); i++)
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313 {
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314 if (!query.GetElement(i).GetValue().IsNull())
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315 {
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316 LOG(INFO) << " " << query.GetElement(i).GetTag()
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317 << " " << FromDcmtkBridge::GetTagName(query.GetElement(i))
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318 << " = " << query.GetElement(i).GetValue().GetContent();
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319 }
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320 }
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321 }
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diff changeset
322
619
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323 /**
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324 * Retrieve the query level.
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325 **/
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326
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327 const DicomValue* levelTmp = input.TestAndGetValue(DICOM_TAG_QUERY_RETRIEVE_LEVEL);
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328
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329 if (levelTmp == NULL ||
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330 levelTmp->IsNull() ||
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331 levelTmp->IsBinary())
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332 {
1231
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333 // The query level is not present in the C-Move request, which
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334 // does not follow the DICOM standard. This is for instance the
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335 // behavior of Tudor DICOM. Try and automatically deduce the
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336 // query level: Start from the instance level, going up to the
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337 // patient level until a valid DICOM identifier is found.
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diff changeset
338
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diff changeset
339 std::vector<std::string> publicIds;
1231
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diff changeset
340
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diff changeset
341 if (LookupIdentifiers(publicIds, ResourceType_Instance, input) ||
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diff changeset
342 LookupIdentifiers(publicIds, ResourceType_Series, input) ||
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diff changeset
343 LookupIdentifiers(publicIds, ResourceType_Study, input) ||
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diff changeset
344 LookupIdentifiers(publicIds, ResourceType_Patient, input))
1231
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345 {
3301
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346 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId);
1231
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347 }
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diff changeset
348 else
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diff changeset
349 {
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diff changeset
350 // No identifier is present in the request.
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diff changeset
351 throw OrthancException(ErrorCode_BadRequest, "Invalid fields in a C-MOVE request");
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352 }
619
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353 }
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diff changeset
354
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diff changeset
355 assert(levelTmp != NULL);
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diff changeset
356 ResourceType level = StringToResourceType(levelTmp->GetContent().c_str());
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diff changeset
357
619
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358
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diff changeset
359 /**
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diff changeset
360 * Lookup for the resource to be sent.
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diff changeset
361 **/
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diff changeset
362
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diff changeset
363 std::vector<std::string> publicIds;
619
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diff changeset
364
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diff changeset
365 if (LookupIdentifiers(publicIds, level, input))
619
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diff changeset
366 {
3301
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diff changeset
367 return CreateIterator(context_, targetAet, publicIds, originatorAet, originatorId);
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diff changeset
368 }
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diff changeset
369 else
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diff changeset
370 {
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diff changeset
371 throw OrthancException(ErrorCode_BadRequest, "Invalid fields in a C-MOVE request");
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372 }
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diff changeset
373 }
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diff changeset
374 }