Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 2238:4f0a9a61d905
refactoring
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 16 Dec 2016 16:22:38 +0100 |
parents | 4f39ab2cb453 |
children | a3a65de1840f |
rev | line source |
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0 | 1 /** |
62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
0 | 5 * |
6 * This program is free software: you can redistribute it and/or | |
7 * modify it under the terms of the GNU General Public License as | |
8 * published by the Free Software Foundation, either version 3 of the | |
9 * License, or (at your option) any later version. | |
136 | 10 * |
11 * In addition, as a special exception, the copyright holders of this | |
12 * program give permission to link the code of its release with the | |
13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
14 * that use the same license as the "OpenSSL" library), and distribute | |
15 * the linked executables. You must obey the GNU General Public License | |
16 * in all respects for all of the code used other than "OpenSSL". If you | |
17 * modify file(s) with this exception, you may extend this exception to | |
18 * your version of the file(s), but you are not obligated to do so. If | |
19 * you do not wish to do so, delete this exception statement from your | |
20 * version. If you delete this exception statement from all source files | |
21 * in the program, then also delete it here. | |
0 | 22 * |
23 * This program is distributed in the hope that it will be useful, but | |
24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
26 * General Public License for more details. | |
27 * | |
28 * You should have received a copy of the GNU General Public License | |
29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
30 **/ | |
31 | |
32 | |
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33 #include "PrecompiledHeadersServer.h" |
0 | 34 #include "ServerIndex.h" |
35 | |
6 | 36 #ifndef NOMINMAX |
2 | 37 #define NOMINMAX |
6 | 38 #endif |
39 | |
1198 | 40 #include "ServerIndexChange.h" |
8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
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43 #include "ParsedDicomFile.h" |
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44 #include "ServerToolbox.h" |
0 | 45 #include "../Core/Toolbox.h" |
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46 #include "../Core/Logging.h" |
0 | 47 #include "../Core/DicomFormat/DicomArray.h" |
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48 |
0 | 49 #include "FromDcmtkBridge.h" |
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50 #include "ServerContext.h" |
1822 | 51 #include "DicomInstanceToStore.h" |
2122 | 52 #include "Search/LookupResource.h" |
0 | 53 |
54 #include <boost/lexical_cast.hpp> | |
55 #include <stdio.h> | |
56 | |
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57 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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58 |
62 | 59 namespace Orthanc |
0 | 60 { |
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61 class ServerIndex::Listener : public IDatabaseListener |
0 | 62 { |
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63 private: |
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64 struct FileToRemove |
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65 { |
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66 private: |
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67 std::string uuid_; |
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68 FileContentType type_; |
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69 |
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70 public: |
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71 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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72 type_(info.GetContentType()) |
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73 { |
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74 } |
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75 |
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76 const std::string& GetUuid() const |
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77 { |
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78 return uuid_; |
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79 } |
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80 |
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81 FileContentType GetContentType() const |
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82 { |
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83 return type_; |
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84 } |
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85 }; |
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86 |
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87 ServerContext& context_; |
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88 bool hasRemainingLevel_; |
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89 ResourceType remainingType_; |
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90 std::string remainingPublicId_; |
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91 std::list<FileToRemove> pendingFilesToRemove_; |
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92 std::list<ServerIndexChange> pendingChanges_; |
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93 uint64_t sizeOfFilesToRemove_; |
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94 bool insideTransaction_; |
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95 |
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96 void Reset() |
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97 { |
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98 sizeOfFilesToRemove_ = 0; |
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99 hasRemainingLevel_ = false; |
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100 pendingFilesToRemove_.clear(); |
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101 pendingChanges_.clear(); |
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102 } |
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103 |
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104 public: |
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105 Listener(ServerContext& context) : context_(context), |
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106 insideTransaction_(false) |
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107 { |
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108 Reset(); |
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109 assert(ResourceType_Patient < ResourceType_Study && |
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110 ResourceType_Study < ResourceType_Series && |
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111 ResourceType_Series < ResourceType_Instance); |
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112 } |
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113 |
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114 void StartTransaction() |
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115 { |
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116 Reset(); |
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117 insideTransaction_ = true; |
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118 } |
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119 |
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120 void EndTransaction() |
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121 { |
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122 insideTransaction_ = false; |
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123 } |
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124 |
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125 uint64_t GetSizeOfFilesToRemove() |
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126 { |
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127 return sizeOfFilesToRemove_; |
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128 } |
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129 |
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130 void CommitFilesToRemove() |
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131 { |
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132 for (std::list<FileToRemove>::const_iterator |
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133 it = pendingFilesToRemove_.begin(); |
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134 it != pendingFilesToRemove_.end(); ++it) |
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135 { |
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136 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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137 } |
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138 } |
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139 |
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140 void CommitChanges() |
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141 { |
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142 for (std::list<ServerIndexChange>::const_iterator |
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143 it = pendingChanges_.begin(); |
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144 it != pendingChanges_.end(); ++it) |
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145 { |
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146 context_.SignalChange(*it); |
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147 } |
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148 } |
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149 |
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150 virtual void SignalRemainingAncestor(ResourceType parentType, |
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151 const std::string& publicId) |
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152 { |
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153 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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154 |
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155 if (hasRemainingLevel_) |
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156 { |
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157 if (parentType < remainingType_) |
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158 { |
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159 remainingType_ = parentType; |
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160 remainingPublicId_ = publicId; |
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161 } |
1158 | 162 } |
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163 else |
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164 { |
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165 hasRemainingLevel_ = true; |
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166 remainingType_ = parentType; |
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167 remainingPublicId_ = publicId; |
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168 } |
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169 } |
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170 |
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171 virtual void SignalFileDeleted(const FileInfo& info) |
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172 { |
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173 assert(Toolbox::IsUuid(info.GetUuid())); |
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174 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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175 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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176 } |
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177 |
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178 virtual void SignalChange(const ServerIndexChange& change) |
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179 { |
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180 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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181 << EnumerationToString(change.GetResourceType()) << ": " |
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182 << EnumerationToString(change.GetChangeType()); |
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183 |
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184 if (insideTransaction_) |
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185 { |
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186 pendingChanges_.push_back(change); |
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187 } |
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188 else |
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189 { |
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190 context_.SignalChange(change); |
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191 } |
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192 } |
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193 |
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194 bool HasRemainingLevel() const |
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195 { |
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196 return hasRemainingLevel_; |
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197 } |
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198 |
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199 ResourceType GetRemainingType() const |
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200 { |
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201 assert(HasRemainingLevel()); |
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202 return remainingType_; |
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203 } |
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204 |
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205 const std::string& GetRemainingPublicId() const |
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206 { |
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207 assert(HasRemainingLevel()); |
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208 return remainingPublicId_; |
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209 } |
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210 }; |
0 | 211 |
212 | |
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213 class ServerIndex::Transaction |
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214 { |
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215 private: |
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216 ServerIndex& index_; |
1235 | 217 std::auto_ptr<SQLite::ITransaction> transaction_; |
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218 bool isCommitted_; |
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219 |
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220 public: |
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221 Transaction(ServerIndex& index) : |
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222 index_(index), |
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223 isCommitted_(false) |
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224 { |
1247 | 225 transaction_.reset(index_.db_.StartTransaction()); |
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226 transaction_->Begin(); |
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227 |
1270 | 228 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
229 | |
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230 index_.listener_->StartTransaction(); |
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231 } |
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232 |
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233 ~Transaction() |
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234 { |
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235 index_.listener_->EndTransaction(); |
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236 |
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237 if (!isCommitted_) |
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238 { |
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239 transaction_->Rollback(); |
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240 } |
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241 } |
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242 |
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243 void Commit(uint64_t sizeOfAddedFiles) |
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244 { |
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245 if (!isCommitted_) |
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246 { |
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247 transaction_->Commit(); |
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248 |
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249 // We can remove the files once the SQLite transaction has |
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250 // been successfully committed. Some files might have to be |
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251 // deleted because of recycling. |
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252 index_.listener_->CommitFilesToRemove(); |
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253 |
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254 index_.currentStorageSize_ += sizeOfAddedFiles; |
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255 |
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256 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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257 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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258 |
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259 // Send all the pending changes to the Orthanc plugins |
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260 index_.listener_->CommitChanges(); |
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261 |
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262 isCommitted_ = true; |
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263 } |
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264 } |
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265 }; |
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266 |
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267 |
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268 class ServerIndex::UnstableResourcePayload |
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269 { |
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270 private: |
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271 ResourceType type_; |
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272 std::string publicId_; |
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273 boost::posix_time::ptime time_; |
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274 |
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275 public: |
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276 UnstableResourcePayload() : type_(ResourceType_Instance) |
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277 { |
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278 } |
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279 |
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280 UnstableResourcePayload(Orthanc::ResourceType type, |
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281 const std::string& publicId) : |
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282 type_(type), |
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283 publicId_(publicId) |
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284 { |
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285 time_ = boost::posix_time::second_clock::local_time(); |
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286 } |
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287 |
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288 unsigned int GetAge() const |
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289 { |
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290 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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291 } |
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292 |
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293 ResourceType GetResourceType() const |
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294 { |
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295 return type_; |
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296 } |
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297 |
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298 const std::string& GetPublicId() const |
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299 { |
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300 return publicId_; |
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301 } |
511
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302 }; |
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303 |
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304 |
212 | 305 bool ServerIndex::DeleteResource(Json::Value& target, |
0 | 306 const std::string& uuid, |
202 | 307 ResourceType expectedType) |
0 | 308 { |
206
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309 boost::mutex::scoped_lock lock(mutex_); |
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310 |
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311 Transaction t(*this); |
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312 |
202 | 313 int64_t id; |
314 ResourceType type; | |
1294 | 315 if (!db_.LookupResource(id, type, uuid) || |
202 | 316 expectedType != type) |
0 | 317 { |
318 return false; | |
319 } | |
202 | 320 |
1247 | 321 db_.DeleteResource(id); |
0 | 322 |
202 | 323 if (listener_->HasRemainingLevel()) |
0 | 324 { |
202 | 325 ResourceType type = listener_->GetRemainingType(); |
326 const std::string& uuid = listener_->GetRemainingPublicId(); | |
0 | 327 |
328 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
204 | 329 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
434
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330 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
0 | 331 target["RemainingAncestor"]["ID"] = uuid; |
332 } | |
333 else | |
334 { | |
335 target["RemainingAncestor"] = Json::nullValue; | |
336 } | |
337 | |
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338 t.Commit(0); |
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339 |
0 | 340 return true; |
341 } | |
342 | |
343 | |
511
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344 void ServerIndex::FlushThread(ServerIndex* that) |
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345 { |
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346 // By default, wait for 10 seconds before flushing |
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347 unsigned int sleep = 10; |
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348 |
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349 try |
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350 { |
744 | 351 boost::mutex::scoped_lock lock(that->mutex_); |
1239 | 352 std::string sleepString; |
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353 |
1247 | 354 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
1239 | 355 Toolbox::IsInteger(sleepString)) |
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356 { |
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357 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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358 } |
511
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359 } |
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360 catch (boost::bad_lexical_cast&) |
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361 { |
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362 } |
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363 |
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364 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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365 |
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366 unsigned int count = 0; |
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367 |
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368 while (!that->done_) |
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369 { |
511
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370 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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371 count++; |
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372 if (count < sleep) |
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373 { |
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374 continue; |
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375 } |
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376 |
2217 | 377 Logging::Flush(); |
378 | |
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379 boost::mutex::scoped_lock lock(that->mutex_); |
1247 | 380 that->db_.FlushToDisk(); |
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381 count = 0; |
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382 } |
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383 |
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384 LOG(INFO) << "Stopping the database flushing thread"; |
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385 } |
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386 |
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387 |
1247 | 388 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
433 | 389 int64_t series, |
390 const DicomMap& dicomSummary) | |
391 { | |
392 try | |
393 { | |
656 | 394 const DicomValue* value; |
395 const DicomValue* value2; | |
396 | |
433 | 397 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
398 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
399 { | |
400 // Patch for series with temporal positions thanks to Will Ryder | |
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401 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->GetContent()); |
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402 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 403 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); |
404 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
405 } | |
406 | |
407 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
408 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
409 { | |
410 // Support of Cardio-PET images | |
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411 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->GetContent()); |
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412 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->GetContent()); |
433 | 413 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); |
414 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
415 } | |
416 | |
417 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
418 { | |
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419 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->GetContent()); |
433 | 420 } |
421 } | |
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422 catch (OrthancException&) |
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423 { |
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424 } |
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425 catch (boost::bad_lexical_cast&) |
433 | 426 { |
427 } | |
428 } | |
429 | |
430 | |
1237 | 431 |
432 | |
1238 | 433 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
1237 | 434 int64_t id, |
435 MetadataType type) | |
436 { | |
1238 | 437 std::string s; |
1247 | 438 if (!db_.LookupMetadata(s, id, type)) |
1237 | 439 { |
440 return false; | |
441 } | |
442 | |
443 try | |
444 { | |
1238 | 445 result = boost::lexical_cast<int64_t>(s); |
1237 | 446 return true; |
447 } | |
448 catch (boost::bad_lexical_cast&) | |
449 { | |
450 return false; | |
451 } | |
452 } | |
453 | |
454 | |
1297 | 455 void ServerIndex::LogChange(int64_t internalId, |
456 ChangeType changeType, | |
457 ResourceType resourceType, | |
458 const std::string& publicId) | |
459 { | |
460 ServerIndexChange change(changeType, resourceType, publicId); | |
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461 |
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462 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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463 { |
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464 db_.LogChange(internalId, change); |
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465 } |
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466 |
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467 assert(listener_.get() != NULL); |
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468 listener_->SignalChange(change); |
1297 | 469 } |
470 | |
1237 | 471 |
472 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
473 { | |
474 std::string oldValue; | |
475 | |
1247 | 476 if (db_.LookupGlobalProperty(oldValue, property)) |
1237 | 477 { |
478 uint64_t oldNumber; | |
479 | |
480 try | |
481 { | |
482 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
1247 | 483 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
1237 | 484 return oldNumber + 1; |
485 } | |
486 catch (boost::bad_lexical_cast&) | |
487 { | |
488 throw OrthancException(ErrorCode_InternalError); | |
489 } | |
490 } | |
491 else | |
492 { | |
493 // Initialize the sequence at "1" | |
1247 | 494 db_.SetGlobalProperty(property, "1"); |
1237 | 495 return 1; |
496 } | |
497 } | |
498 | |
499 | |
500 | |
1299 | 501 int64_t ServerIndex::CreateResource(const std::string& publicId, |
502 ResourceType type) | |
503 { | |
504 int64_t id = db_.CreateResource(publicId, type); | |
505 | |
506 ChangeType changeType; | |
507 switch (type) | |
508 { | |
509 case ResourceType_Patient: | |
510 changeType = ChangeType_NewPatient; | |
511 break; | |
512 | |
513 case ResourceType_Study: | |
514 changeType = ChangeType_NewStudy; | |
515 break; | |
516 | |
517 case ResourceType_Series: | |
518 changeType = ChangeType_NewSeries; | |
519 break; | |
520 | |
521 case ResourceType_Instance: | |
522 changeType = ChangeType_NewInstance; | |
523 break; | |
524 | |
525 default: | |
526 throw OrthancException(ErrorCode_InternalError); | |
527 } | |
528 | |
529 ServerIndexChange change(changeType, type, publicId); | |
530 db_.LogChange(id, change); | |
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531 |
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532 assert(listener_.get() != NULL); |
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533 listener_->SignalChange(change); |
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534 |
1299 | 535 return id; |
536 } | |
537 | |
1286 | 538 |
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539 ServerIndex::ServerIndex(ServerContext& context, |
1247 | 540 IDatabaseWrapper& db) : |
511
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541 done_(false), |
1247 | 542 db_(db), |
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543 maximumStorageSize_(0), |
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544 maximumPatients_(0) |
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545 { |
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546 listener_.reset(new Listener(context)); |
1247 | 547 db_.SetListener(*listener_); |
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548 |
1247 | 549 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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550 |
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551 // Initial recycling if the parameters have changed since the last |
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552 // execution of Orthanc |
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553 StandaloneRecycling(); |
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554 |
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555 if (db.HasFlushToDisk()) |
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556 { |
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557 flushThread_ = boost::thread(FlushThread, this); |
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558 } |
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559 |
511
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560 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
206
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561 } |
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562 |
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563 |
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564 |
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565 ServerIndex::~ServerIndex() |
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566 { |
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567 if (!done_) |
511
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568 { |
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569 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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570 Stop(); |
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571 } |
0 | 572 } |
573 | |
574 | |
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575 |
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576 void ServerIndex::Stop() |
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577 { |
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578 if (!done_) |
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579 { |
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580 done_ = true; |
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581 |
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582 if (db_.HasFlushToDisk() && |
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583 flushThread_.joinable()) |
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584 { |
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585 flushThread_.join(); |
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586 } |
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587 |
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588 if (unstableResourcesMonitorThread_.joinable()) |
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589 { |
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590 unstableResourcesMonitorThread_.join(); |
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591 } |
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592 } |
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593 } |
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594 |
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595 |
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596 |
2188 | 597 void ServerIndex::SetInstanceMetadata(std::map<MetadataType, std::string>& instanceMetadata, |
598 int64_t instance, | |
599 MetadataType metadata, | |
600 const std::string& value) | |
601 { | |
602 db_.SetMetadata(instance, metadata, value); | |
603 instanceMetadata[metadata] = value; | |
604 } | |
605 | |
606 | |
607 | |
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608 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
1822 | 609 DicomInstanceToStore& instanceToStore, |
610 const Attachments& attachments) | |
0 | 611 { |
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612 boost::mutex::scoped_lock lock(mutex_); |
0 | 613 |
1822 | 614 const DicomMap& dicomSummary = instanceToStore.GetSummary(); |
615 const ServerIndex::MetadataMap& metadata = instanceToStore.GetMetadata(); | |
616 | |
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617 instanceMetadata.clear(); |
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618 |
1822 | 619 DicomInstanceHasher hasher(instanceToStore.GetSummary()); |
0 | 620 |
621 try | |
622 { | |
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623 Transaction t(*this); |
0 | 624 |
202 | 625 // Do nothing if the instance already exists |
0 | 626 { |
432 | 627 ResourceType type; |
628 int64_t tmp; | |
1294 | 629 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
432 | 630 { |
631 assert(type == ResourceType_Instance); | |
1247 | 632 db_.GetAllMetadata(instanceMetadata, tmp); |
432 | 633 return StoreStatus_AlreadyStored; |
634 } | |
0 | 635 } |
636 | |
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637 // Ensure there is enough room in the storage for the new instance |
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638 uint64_t instanceSize = 0; |
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639 for (Attachments::const_iterator it = attachments.begin(); |
656 | 640 it != attachments.end(); ++it) |
268
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641 { |
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642 instanceSize += it->GetCompressedSize(); |
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643 } |
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644 |
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645 Recycle(instanceSize, hasher.HashPatient()); |
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646 |
202 | 647 // Create the instance |
1299 | 648 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
2120 | 649 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, dicomSummary); |
202 | 650 |
432 | 651 // Detect up to which level the patient/study/series/instance |
652 // hierarchy must be created | |
653 int64_t patient = -1, study = -1, series = -1; | |
654 bool isNewPatient = false; | |
655 bool isNewStudy = false; | |
656 bool isNewSeries = false; | |
657 | |
0 | 658 { |
432 | 659 ResourceType dummy; |
660 | |
1294 | 661 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
432 | 662 { |
663 assert(dummy == ResourceType_Series); | |
664 // The patient, the study and the series already exist | |
665 | |
1294 | 666 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
667 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
432 | 668 assert(ok); |
669 } | |
1294 | 670 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
432 | 671 { |
672 assert(dummy == ResourceType_Study); | |
673 | |
674 // New series: The patient and the study already exist | |
675 isNewSeries = true; | |
676 | |
1294 | 677 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
432 | 678 assert(ok); |
679 } | |
1294 | 680 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
432 | 681 { |
682 assert(dummy == ResourceType_Patient); | |
683 | |
684 // New study and series: The patient already exist | |
685 isNewStudy = true; | |
686 isNewSeries = true; | |
687 } | |
688 else | |
689 { | |
690 // New patient, study and series: Nothing exists | |
691 isNewPatient = true; | |
692 isNewStudy = true; | |
693 isNewSeries = true; | |
694 } | |
695 } | |
696 | |
697 // Create the series if needed | |
698 if (isNewSeries) | |
699 { | |
1299 | 700 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
2120 | 701 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, dicomSummary); |
432 | 702 } |
202 | 703 |
432 | 704 // Create the study if needed |
705 if (isNewStudy) | |
706 { | |
1299 | 707 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
2120 | 708 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, dicomSummary); |
432 | 709 } |
710 | |
711 // Create the patient if needed | |
712 if (isNewPatient) | |
713 { | |
1299 | 714 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
2120 | 715 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, dicomSummary); |
432 | 716 } |
202 | 717 |
432 | 718 // Create the parent-to-child links |
1247 | 719 db_.AttachChild(series, instance); |
432 | 720 |
721 if (isNewSeries) | |
722 { | |
1247 | 723 db_.AttachChild(study, series); |
0 | 724 } |
432 | 725 |
726 if (isNewStudy) | |
0 | 727 { |
1247 | 728 db_.AttachChild(patient, study); |
0 | 729 } |
730 | |
432 | 731 // Sanity checks |
732 assert(patient != -1); | |
733 assert(study != -1); | |
734 assert(series != -1); | |
735 assert(instance != -1); | |
736 | |
202 | 737 // Attach the files to the newly created instance |
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738 for (Attachments::const_iterator it = attachments.begin(); |
656 | 739 it != attachments.end(); ++it) |
232
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740 { |
1247 | 741 db_.AddAttachment(instance, *it); |
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742 } |
202 | 743 |
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744 // Attach the user-specified metadata |
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745 for (MetadataMap::const_iterator |
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746 it = metadata.begin(); it != metadata.end(); ++it) |
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747 { |
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748 switch (it->first.first) |
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749 { |
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750 case ResourceType_Patient: |
1247 | 751 db_.SetMetadata(patient, it->first.second, it->second); |
1006
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752 break; |
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753 |
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754 case ResourceType_Study: |
1247 | 755 db_.SetMetadata(study, it->first.second, it->second); |
1006
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756 break; |
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757 |
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758 case ResourceType_Series: |
1247 | 759 db_.SetMetadata(series, it->first.second, it->second); |
1006
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760 break; |
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761 |
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762 case ResourceType_Instance: |
2188 | 763 SetInstanceMetadata(instanceMetadata, instance, it->first.second, it->second); |
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764 break; |
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765 |
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766 default: |
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767 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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768 } |
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769 } |
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|
770 |
1004
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771 // Attach the auto-computed metadata for the patient/study/series levels |
2140 | 772 std::string now = SystemToolbox::GetNowIsoString(); |
1247 | 773 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
774 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
775 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
1004
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|
776 |
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777 // Attach the auto-computed metadata for the instance level, |
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778 // reflecting these additions into the input metadata map |
2188 | 779 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_ReceptionDate, now); |
780 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_RemoteAet, instanceToStore.GetRemoteAet()); | |
2189
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781 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_Origin, |
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diff
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782 EnumerationToString(instanceToStore.GetRequestOrigin())); |
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|
783 |
1823
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"Origin" metadata for the instances
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784 { |
2189
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785 std::string s; |
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786 if (instanceToStore.LookupTransferSyntax(s)) |
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787 { |
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788 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_TransferSyntax, s); |
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789 } |
1823
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790 } |
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791 |
202 | 792 const DicomValue* value; |
2208
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793 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
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794 !value->IsNull() && |
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diff
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|
795 !value->IsBinary()) |
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|
796 { |
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|
797 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
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798 } |
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|
799 |
202 | 800 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || |
801 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
0 | 802 { |
1737
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803 if (!value->IsNull() && |
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|
804 !value->IsBinary()) |
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|
805 { |
2188 | 806 SetInstanceMetadata(instanceMetadata, instance, MetadataType_Instance_IndexInSeries, value->GetContent()); |
1737
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|
807 } |
0 | 808 } |
809 | |
1004
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diff
changeset
|
810 // Check whether the series of this new instance is now completed |
202 | 811 if (isNewSeries) |
812 { | |
1247 | 813 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
202 | 814 } |
815 | |
205
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816 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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817 if (seriesStatus == SeriesStatus_Complete) |
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|
818 { |
1237 | 819 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
205
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|
820 } |
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|
821 |
511
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diff
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|
822 // Mark the parent resources of this instance as unstable |
1177
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|
823 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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|
824 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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|
825 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
511
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|
826 |
278
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827 t.Commit(instanceSize); |
268
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diff
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|
828 |
0 | 829 return StoreStatus_Success; |
830 } | |
62 | 831 catch (OrthancException& e) |
0 | 832 { |
1247 | 833 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
0 | 834 } |
835 | |
836 return StoreStatus_Failure; | |
837 } | |
838 | |
839 | |
238 | 840 void ServerIndex::ComputeStatistics(Json::Value& target) |
0 | 841 { |
206
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diff
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|
842 boost::mutex::scoped_lock lock(mutex_); |
238 | 843 target = Json::objectValue; |
0 | 844 |
278
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|
845 uint64_t cs = currentStorageSize_; |
1247 | 846 assert(cs == db_.GetTotalCompressedSize()); |
847 uint64_t us = db_.GetTotalUncompressedSize(); | |
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
848 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
238 | 849 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
1310
61ce8147f30d
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Sebastien Jodogne <s.jodogne@gmail.com>
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1306
diff
changeset
|
850 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
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diff
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|
851 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
238 | 852 |
1247 | 853 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
854 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
855 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
856 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
238 | 857 } |
858 | |
187
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diff
changeset
|
859 |
8e673a65564d
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Sebastien Jodogne <s.jodogne@gmail.com>
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186
diff
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|
860 |
585 | 861 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
199 | 862 { |
863 // Get the expected number of instances in this series (from the metadata) | |
1238 | 864 int64_t expected; |
865 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
199 | 866 { |
867 return SeriesStatus_Unknown; | |
868 } | |
869 | |
870 // Loop over the instances of this series | |
871 std::list<int64_t> children; | |
1247 | 872 db_.GetChildrenInternalId(children, id); |
199 | 873 |
1238 | 874 std::set<int64_t> instances; |
199 | 875 for (std::list<int64_t>::const_iterator |
656 | 876 it = children.begin(); it != children.end(); ++it) |
199 | 877 { |
878 // Get the index of this instance in the series | |
1238 | 879 int64_t index; |
880 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
199 | 881 { |
882 return SeriesStatus_Unknown; | |
883 } | |
884 | |
656 | 885 if (!(index > 0 && index <= expected)) |
199 | 886 { |
887 // Out-of-range instance index | |
888 return SeriesStatus_Inconsistent; | |
889 } | |
890 | |
891 if (instances.find(index) != instances.end()) | |
892 { | |
893 // Twice the same instance index | |
894 return SeriesStatus_Inconsistent; | |
895 } | |
896 | |
897 instances.insert(index); | |
898 } | |
899 | |
1238 | 900 if (static_cast<int64_t>(instances.size()) == expected) |
199 | 901 { |
902 return SeriesStatus_Complete; | |
903 } | |
904 else | |
905 { | |
906 return SeriesStatus_Missing; | |
907 } | |
908 } | |
909 | |
910 | |
202 | 911 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
912 int64_t resourceId, |
de1413733c97
reconstructing main dicom tags
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diff
changeset
|
913 ResourceType resourceType) |
198
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|
914 { |
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diff
changeset
|
915 DicomMap tags; |
1247 | 916 db_.GetMainDicomTags(tags, resourceId); |
1676
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
917 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
918 if (resourceType == ResourceType_Study) |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
919 { |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
920 DicomMap t1, t2; |
f079f3efe33b
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parents:
1668
diff
changeset
|
921 tags.ExtractStudyInformation(t1); |
f079f3efe33b
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parents:
1668
diff
changeset
|
922 tags.ExtractPatientInformation(t2); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
923 |
f079f3efe33b
patient tags reported in studies
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
924 target["MainDicomTags"] = Json::objectValue; |
f079f3efe33b
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parents:
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diff
changeset
|
925 FromDcmtkBridge::ToJson(target["MainDicomTags"], t1, true); |
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diff
changeset
|
926 |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
927 target["PatientMainDicomTags"] = Json::objectValue; |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
928 FromDcmtkBridge::ToJson(target["PatientMainDicomTags"], t2, true); |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
929 } |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
930 else |
f079f3efe33b
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
931 { |
f079f3efe33b
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parents:
1668
diff
changeset
|
932 target["MainDicomTags"] = Json::objectValue; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1668
diff
changeset
|
933 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
f079f3efe33b
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|
934 } |
198
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935 } |
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936 |
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diff
changeset
|
937 bool ServerIndex::LookupResource(Json::Value& result, |
199 | 938 const std::string& publicId, |
939 ResourceType expectedType) | |
198
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940 { |
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|
941 result = Json::objectValue; |
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|
942 |
206
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diff
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|
943 boost::mutex::scoped_lock lock(mutex_); |
199 | 944 |
198
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945 // Lookup for the requested resource |
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946 int64_t id; |
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diff
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|
947 ResourceType type; |
1294 | 948 if (!db_.LookupResource(id, type, publicId) || |
199 | 949 type != expectedType) |
198
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950 { |
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951 return false; |
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952 } |
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953 |
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|
954 // Find the parent resource (if it exists) |
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955 if (type != ResourceType_Patient) |
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diff
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|
956 { |
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diff
changeset
|
957 int64_t parentId; |
1247 | 958 if (!db_.LookupParent(parentId, id)) |
198
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959 { |
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|
960 throw OrthancException(ErrorCode_InternalError); |
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961 } |
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962 |
1247 | 963 std::string parent = db_.GetPublicId(parentId); |
198
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964 |
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|
965 switch (type) |
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|
966 { |
269
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|
967 case ResourceType_Study: |
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|
968 result["ParentPatient"] = parent; |
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969 break; |
198
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|
970 |
269
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|
971 case ResourceType_Series: |
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|
972 result["ParentStudy"] = parent; |
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diff
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|
973 break; |
198
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diff
changeset
|
974 |
269
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diff
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|
975 case ResourceType_Instance: |
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|
976 result["ParentSeries"] = parent; |
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diff
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977 break; |
198
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diff
changeset
|
978 |
269
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diff
changeset
|
979 default: |
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|
980 throw OrthancException(ErrorCode_InternalError); |
198
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diff
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|
981 } |
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diff
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|
982 } |
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|
983 |
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|
984 // List the children resources |
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diff
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|
985 std::list<std::string> children; |
1247 | 986 db_.GetChildrenPublicId(children, id); |
198
663cc6c46d0a
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diff
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|
987 |
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diff
changeset
|
988 if (type != ResourceType_Instance) |
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diff
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|
989 { |
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diff
changeset
|
990 Json::Value c = Json::arrayValue; |
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diff
changeset
|
991 |
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197
diff
changeset
|
992 for (std::list<std::string>::const_iterator |
656 | 993 it = children.begin(); it != children.end(); ++it) |
198
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
994 { |
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diff
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|
995 c.append(*it); |
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
996 } |
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diff
changeset
|
997 |
663cc6c46d0a
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parents:
197
diff
changeset
|
998 switch (type) |
663cc6c46d0a
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diff
changeset
|
999 { |
269
f6fdf5abe751
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diff
changeset
|
1000 case ResourceType_Patient: |
f6fdf5abe751
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diff
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|
1001 result["Studies"] = c; |
f6fdf5abe751
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diff
changeset
|
1002 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1003 |
269
f6fdf5abe751
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diff
changeset
|
1004 case ResourceType_Study: |
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diff
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|
1005 result["Series"] = c; |
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parents:
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diff
changeset
|
1006 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1007 |
269
f6fdf5abe751
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diff
changeset
|
1008 case ResourceType_Series: |
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diff
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|
1009 result["Instances"] = c; |
f6fdf5abe751
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diff
changeset
|
1010 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1011 |
269
f6fdf5abe751
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diff
changeset
|
1012 default: |
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|
1013 throw OrthancException(ErrorCode_InternalError); |
198
663cc6c46d0a
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diff
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|
1014 } |
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diff
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|
1015 } |
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|
1016 |
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diff
changeset
|
1017 // Set the resource type |
663cc6c46d0a
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diff
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|
1018 switch (type) |
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diff
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|
1019 { |
269
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diff
changeset
|
1020 case ResourceType_Patient: |
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diff
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|
1021 result["Type"] = "Patient"; |
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268
diff
changeset
|
1022 break; |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1023 |
269
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268
diff
changeset
|
1024 case ResourceType_Study: |
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diff
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|
1025 result["Type"] = "Study"; |
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268
diff
changeset
|
1026 break; |
199 | 1027 |
269
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268
diff
changeset
|
1028 case ResourceType_Series: |
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diff
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|
1029 { |
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268
diff
changeset
|
1030 result["Type"] = "Series"; |
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
1031 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
198
663cc6c46d0a
before refactoring of ServerIndex::GetXXX
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197
diff
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|
1032 |
1238 | 1033 int64_t i; |
1237 | 1034 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
1238 | 1035 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
269
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diff
changeset
|
1036 else |
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268
diff
changeset
|
1037 result["ExpectedNumberOfInstances"] = Json::nullValue; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1038 |
269
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268
diff
changeset
|
1039 break; |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1040 } |
9c58b2b03cf0
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parents:
199
diff
changeset
|
1041 |
269
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268
diff
changeset
|
1042 case ResourceType_Instance: |
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diff
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|
1043 { |
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diff
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|
1044 result["Type"] = "Instance"; |
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diff
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|
1045 |
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268
diff
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|
1046 FileInfo attachment; |
1247 | 1047 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
269
f6fdf5abe751
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diff
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|
1048 { |
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diff
changeset
|
1049 throw OrthancException(ErrorCode_InternalError); |
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diff
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|
1050 } |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
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199
diff
changeset
|
1051 |
269
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diff
changeset
|
1052 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
f6fdf5abe751
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268
diff
changeset
|
1053 result["FileUuid"] = attachment.GetUuid(); |
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1054 |
1238 | 1055 int64_t i; |
1237 | 1056 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
1238 | 1057 result["IndexInSeries"] = static_cast<int>(i); |
269
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diff
changeset
|
1058 else |
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diff
changeset
|
1059 result["IndexInSeries"] = Json::nullValue; |
198
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diff
changeset
|
1060 |
269
f6fdf5abe751
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diff
changeset
|
1061 break; |
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diff
changeset
|
1062 } |
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diff
changeset
|
1063 |
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diff
changeset
|
1064 default: |
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diff
changeset
|
1065 throw OrthancException(ErrorCode_InternalError); |
198
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|
1066 } |
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|
1067 |
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|
1068 // Record the remaining information |
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diff
changeset
|
1069 result["ID"] = publicId; |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
1070 MainDicomTagsToJson(result, id, type); |
198
663cc6c46d0a
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|
1071 |
315 | 1072 std::string tmp; |
1073 | |
1247 | 1074 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
1236 | 1075 { |
315 | 1076 result["AnonymizedFrom"] = tmp; |
1236 | 1077 } |
315 | 1078 |
1247 | 1079 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
1236 | 1080 { |
315 | 1081 result["ModifiedFrom"] = tmp; |
1236 | 1082 } |
315 | 1083 |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1084 if (type == ResourceType_Patient || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1085 type == ResourceType_Study || |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1086 type == ResourceType_Series) |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1087 { |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1088 result["IsStable"] = !unstableResources_.Contains(id); |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1089 |
1247 | 1090 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
1236 | 1091 { |
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1092 result["LastUpdate"] = tmp; |
1236 | 1093 } |
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1094 } |
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1095 |
198
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197
diff
changeset
|
1096 return true; |
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diff
changeset
|
1097 } |
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diff
changeset
|
1098 |
0 | 1099 |
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1100 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1101 const std::string& instanceUuid, |
233 | 1102 FileContentType contentType) |
0 | 1103 { |
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1104 boost::mutex::scoped_lock lock(mutex_); |
0 | 1105 |
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1106 int64_t id; |
a1b9d1e1497b
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1107 ResourceType type; |
1294 | 1108 if (!db_.LookupResource(id, type, instanceUuid)) |
192
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1109 { |
1113
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1110 throw OrthancException(ErrorCode_UnknownResource); |
192
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1111 } |
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1112 |
1247 | 1113 if (db_.LookupAttachment(attachment, id, contentType)) |
232
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1114 { |
233 | 1115 assert(attachment.GetContentType() == contentType); |
232
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1116 return true; |
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1117 } |
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1118 else |
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1119 { |
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1120 return false; |
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1121 } |
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1122 } |
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1123 |
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1124 |
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1125 |
1354 | 1126 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
190 | 1127 ResourceType resourceType) |
0 | 1128 { |
1357 | 1129 boost::mutex::scoped_lock lock(mutex_); |
1130 db_.GetAllPublicIds(target, resourceType); | |
0 | 1131 } |
1132 | |
1133 | |
1509
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1134 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
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1135 ResourceType resourceType, |
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1136 size_t since, |
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1137 size_t limit) |
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1138 { |
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1139 if (limit == 0) |
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1140 { |
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1141 target.clear(); |
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1142 return; |
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1143 } |
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1144 |
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1145 boost::mutex::scoped_lock lock(mutex_); |
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1146 db_.GetAllPublicIds(target, resourceType, since, limit); |
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1147 } |
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1148 |
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1149 |
1244 | 1150 template <typename T> |
1151 static void FormatLog(Json::Value& target, | |
1152 const std::list<T>& log, | |
1153 const std::string& name, | |
1154 bool done, | |
1155 int64_t since) | |
1240 | 1156 { |
1157 Json::Value items = Json::arrayValue; | |
1244 | 1158 for (typename std::list<T>::const_iterator |
1304 | 1159 it = log.begin(); it != log.end(); ++it) |
1240 | 1160 { |
1161 Json::Value item; | |
1162 it->Format(item); | |
1163 items.append(item); | |
1164 } | |
1165 | |
1166 target = Json::objectValue; | |
1244 | 1167 target[name] = items; |
1240 | 1168 target["Done"] = done; |
1169 | |
1305 | 1170 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
1240 | 1171 target["Last"] = static_cast<int>(last); |
1172 } | |
1173 | |
1174 | |
1247 | 1175 void ServerIndex::GetChanges(Json::Value& target, |
204 | 1176 int64_t since, |
0 | 1177 unsigned int maxResults) |
1178 { | |
1240 | 1179 std::list<ServerIndexChange> changes; |
1180 bool done; | |
1181 | |
1182 { | |
1183 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1184 db_.GetChanges(changes, done, since, maxResults); |
1240 | 1185 } |
1186 | |
1244 | 1187 FormatLog(target, changes, "Changes", done, since); |
237
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1188 } |
0 | 1189 |
1240 | 1190 |
1247 | 1191 void ServerIndex::GetLastChange(Json::Value& target) |
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1192 { |
1240 | 1193 std::list<ServerIndexChange> changes; |
1194 | |
1195 { | |
1196 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1197 db_.GetLastChange(changes); |
1240 | 1198 } |
1199 | |
1244 | 1200 FormatLog(target, changes, "Changes", true, 0); |
0 | 1201 } |
231 | 1202 |
1240 | 1203 |
231 | 1204 void ServerIndex::LogExportedResource(const std::string& publicId, |
1205 const std::string& remoteModality) | |
1206 { | |
1207 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1208 Transaction transaction(*this); |
231 | 1209 |
1210 int64_t id; | |
1211 ResourceType type; | |
1294 | 1212 if (!db_.LookupResource(id, type, publicId)) |
231 | 1213 { |
1214 throw OrthancException(ErrorCode_InternalError); | |
1215 } | |
1216 | |
1217 std::string patientId; | |
1218 std::string studyInstanceUid; | |
1219 std::string seriesInstanceUid; | |
1220 std::string sopInstanceUid; | |
1221 | |
1222 int64_t currentId = id; | |
1223 ResourceType currentType = type; | |
1224 | |
1225 // Iteratively go up inside the patient/study/series/instance hierarchy | |
1226 bool done = false; | |
1227 while (!done) | |
1228 { | |
1229 DicomMap map; | |
1247 | 1230 db_.GetMainDicomTags(map, currentId); |
231 | 1231 |
1232 switch (currentType) | |
1233 { | |
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1234 case ResourceType_Patient: |
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1235 if (map.HasTag(DICOM_TAG_PATIENT_ID)) |
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1236 { |
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1237 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).GetContent(); |
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1238 } |
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1239 done = true; |
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1240 break; |
231 | 1241 |
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1242 case ResourceType_Study: |
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1243 if (map.HasTag(DICOM_TAG_STUDY_INSTANCE_UID)) |
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1244 { |
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1245 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).GetContent(); |
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1246 } |
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1247 currentType = ResourceType_Patient; |
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1248 break; |
231 | 1249 |
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1250 case ResourceType_Series: |
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1251 if (map.HasTag(DICOM_TAG_SERIES_INSTANCE_UID)) |
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1252 { |
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1253 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).GetContent(); |
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1254 } |
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1255 currentType = ResourceType_Study; |
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1256 break; |
231 | 1257 |
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1258 case ResourceType_Instance: |
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1259 if (map.HasTag(DICOM_TAG_SOP_INSTANCE_UID)) |
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1260 { |
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1261 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).GetContent(); |
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1262 } |
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1263 currentType = ResourceType_Series; |
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1264 break; |
231 | 1265 |
269
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1266 default: |
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1267 throw OrthancException(ErrorCode_InternalError); |
231 | 1268 } |
1269 | |
1270 // If we have not reached the Patient level, find the parent of | |
1271 // the current resource | |
1272 if (!done) | |
1273 { | |
1247 | 1274 bool ok = db_.LookupParent(currentId, currentId); |
375
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1275 assert(ok); |
231 | 1276 } |
1277 } | |
1278 | |
1246 | 1279 ExportedResource resource(-1, |
1280 type, | |
1281 publicId, | |
1282 remoteModality, | |
2140 | 1283 SystemToolbox::GetNowIsoString(), |
1246 | 1284 patientId, |
1285 studyInstanceUid, | |
1286 seriesInstanceUid, | |
1287 sopInstanceUid); | |
1310
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1288 |
1247 | 1289 db_.LogExportedResource(resource); |
1310
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1290 transaction.Commit(0); |
231 | 1291 } |
1292 | |
1293 | |
1247 | 1294 void ServerIndex::GetExportedResources(Json::Value& target, |
231 | 1295 int64_t since, |
1296 unsigned int maxResults) | |
1297 { | |
1244 | 1298 std::list<ExportedResource> exported; |
1299 bool done; | |
1300 | |
1301 { | |
1302 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1303 db_.GetExportedResources(exported, done, since, maxResults); |
1244 | 1304 } |
1305 | |
1306 FormatLog(target, exported, "Exports", done, since); | |
231 | 1307 } |
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1308 |
1244 | 1309 |
1247 | 1310 void ServerIndex::GetLastExportedResource(Json::Value& target) |
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1311 { |
1244 | 1312 std::list<ExportedResource> exported; |
1313 | |
1314 { | |
1315 boost::mutex::scoped_lock lock(mutex_); | |
1247 | 1316 db_.GetLastExportedResource(exported); |
1244 | 1317 } |
1318 | |
1319 FormatLog(target, exported, "Exports", true, 0); | |
237
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1320 } |
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1321 |
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1322 |
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1323 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1324 { |
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1325 if (maximumStorageSize_ != 0) |
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1326 { |
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1327 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
1247 | 1328 assert(db_.GetTotalCompressedSize() == currentSize); |
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1329 |
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1330 if (currentSize + instanceSize > maximumStorageSize_) |
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1331 { |
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1332 return true; |
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1333 } |
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1334 } |
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1335 |
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1336 if (maximumPatients_ != 0) |
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1337 { |
1247 | 1338 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1339 if (patientCount > maximumPatients_) |
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1340 { |
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1341 return true; |
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1342 } |
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1343 } |
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1344 |
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1345 return false; |
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1346 } |
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1347 |
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1348 |
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1349 void ServerIndex::Recycle(uint64_t instanceSize, |
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1350 const std::string& newPatientId) |
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1351 { |
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1352 if (!IsRecyclingNeeded(instanceSize)) |
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1353 { |
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1354 return; |
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1355 } |
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1356 |
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1357 // Check whether other DICOM instances from this patient are |
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1358 // already stored |
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1359 int64_t patientToAvoid; |
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1360 ResourceType type; |
1294 | 1361 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1362 |
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1363 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1364 { |
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1365 throw OrthancException(ErrorCode_InternalError); |
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1366 } |
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1367 |
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1368 // Iteratively select patient to remove until there is enough |
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1369 // space in the DICOM store |
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1370 int64_t patientToRecycle; |
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1371 while (true) |
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1372 { |
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1373 // If other instances of this patient are already in the store, |
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1374 // we must avoid to recycle them |
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1375 bool ok = hasPatientToAvoid ? |
1247 | 1376 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
1377 db_.SelectPatientToRecycle(patientToRecycle); | |
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1378 |
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1379 if (!ok) |
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1380 { |
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1381 throw OrthancException(ErrorCode_FullStorage); |
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1382 } |
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1383 |
1331
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1384 VLOG(1) << "Recycling one patient"; |
1247 | 1385 db_.DeleteResource(patientToRecycle); |
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1386 |
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1387 if (!IsRecyclingNeeded(instanceSize)) |
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1388 { |
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1389 // OK, we're done |
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1390 break; |
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1391 } |
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1392 } |
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1393 } |
269
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1394 |
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1395 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1396 { |
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1397 boost::mutex::scoped_lock lock(mutex_); |
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1398 maximumPatients_ = count; |
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1399 |
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1400 if (count == 0) |
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1401 { |
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1402 LOG(WARNING) << "No limit on the number of stored patients"; |
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1403 } |
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1404 else |
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1405 { |
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1406 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1407 } |
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1408 |
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1409 StandaloneRecycling(); |
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1410 } |
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1411 |
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1412 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
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1413 { |
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1414 boost::mutex::scoped_lock lock(mutex_); |
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1415 maximumStorageSize_ = size; |
270
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1416 |
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1417 if (size == 0) |
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1418 { |
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1419 LOG(WARNING) << "No limit on the size of the storage area"; |
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1420 } |
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1421 else |
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1422 { |
440
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|
1423 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
270
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1424 } |
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1425 |
269
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1426 StandaloneRecycling(); |
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1427 } |
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1428 |
272
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1429 void ServerIndex::StandaloneRecycling() |
269
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1430 { |
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1431 // WARNING: No mutex here, do not include this as a public method |
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1432 Transaction t(*this); |
269
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1433 Recycle(0, ""); |
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1434 t.Commit(0); |
269
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1435 } |
272
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1436 |
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1437 |
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1438 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
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1439 { |
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1440 boost::mutex::scoped_lock lock(mutex_); |
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1441 |
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1442 // Lookup for the requested resource |
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1443 int64_t id; |
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1444 ResourceType type; |
1294 | 1445 if (!db_.LookupResource(id, type, publicId) || |
272
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1446 type != ResourceType_Patient) |
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1447 { |
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1448 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1449 } |
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1450 |
1247 | 1451 return db_.IsProtectedPatient(id); |
272
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1452 } |
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1453 |
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1454 |
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1455 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
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1456 bool isProtected) |
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1457 { |
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1458 boost::mutex::scoped_lock lock(mutex_); |
1310
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1459 Transaction transaction(*this); |
272
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1460 |
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1461 // Lookup for the requested resource |
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1462 int64_t id; |
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1463 ResourceType type; |
1294 | 1464 if (!db_.LookupResource(id, type, publicId) || |
272
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1465 type != ResourceType_Patient) |
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1466 { |
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1467 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1468 } |
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1469 |
1247 | 1470 db_.SetProtectedPatient(id, isProtected); |
1310
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1471 transaction.Commit(0); |
272
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1472 |
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1473 if (isProtected) |
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1474 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1475 else |
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1476 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1477 } |
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1478 |
304 | 1479 |
714
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1480 void ServerIndex::GetChildren(std::list<std::string>& result, |
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1481 const std::string& publicId) |
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1482 { |
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1483 result.clear(); |
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1484 |
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1485 boost::mutex::scoped_lock lock(mutex_); |
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1486 |
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1487 ResourceType type; |
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1488 int64_t resource; |
1294 | 1489 if (!db_.LookupResource(resource, type, publicId)) |
714
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1490 { |
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1491 throw OrthancException(ErrorCode_UnknownResource); |
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1492 } |
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1493 |
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1494 if (type == ResourceType_Instance) |
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1495 { |
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1496 // An instance cannot have a child |
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1497 throw OrthancException(ErrorCode_BadParameterType); |
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1498 } |
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1499 |
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1500 std::list<int64_t> tmp; |
1247 | 1501 db_.GetChildrenInternalId(tmp, resource); |
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1502 |
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1503 for (std::list<int64_t>::const_iterator |
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1504 it = tmp.begin(); it != tmp.end(); ++it) |
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1505 { |
1247 | 1506 result.push_back(db_.GetPublicId(*it)); |
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1507 } |
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1508 } |
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1509 |
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1510 |
304 | 1511 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
1512 const std::string& publicId) | |
1513 { | |
1514 result.clear(); | |
1515 | |
1516 boost::mutex::scoped_lock lock(mutex_); | |
1517 | |
1518 ResourceType type; | |
1519 int64_t top; | |
1294 | 1520 if (!db_.LookupResource(top, type, publicId)) |
304 | 1521 { |
1522 throw OrthancException(ErrorCode_UnknownResource); | |
1523 } | |
1524 | |
1525 if (type == ResourceType_Instance) | |
1526 { | |
1527 // The resource is already an instance: Do not go down the hierarchy | |
1528 result.push_back(publicId); | |
1529 return; | |
1530 } | |
1531 | |
1532 std::stack<int64_t> toExplore; | |
1533 toExplore.push(top); | |
1534 | |
1535 std::list<int64_t> tmp; | |
1536 | |
1537 while (!toExplore.empty()) | |
1538 { | |
1539 // Get the internal ID of the current resource | |
1540 int64_t resource = toExplore.top(); | |
1541 toExplore.pop(); | |
1542 | |
1247 | 1543 if (db_.GetResourceType(resource) == ResourceType_Instance) |
304 | 1544 { |
1247 | 1545 result.push_back(db_.GetPublicId(resource)); |
304 | 1546 } |
1547 else | |
1548 { | |
1549 // Tag all the children of this resource as to be explored | |
1247 | 1550 db_.GetChildrenInternalId(tmp, resource); |
304 | 1551 for (std::list<int64_t>::const_iterator |
656 | 1552 it = tmp.begin(); it != tmp.end(); ++it) |
304 | 1553 { |
1554 toExplore.push(*it); | |
1555 } | |
1556 } | |
1557 } | |
1558 } | |
1559 | |
306
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1560 |
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1561 void ServerIndex::SetMetadata(const std::string& publicId, |
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1562 MetadataType type, |
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1563 const std::string& value) |
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1564 { |
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1565 boost::mutex::scoped_lock lock(mutex_); |
1773
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1566 Transaction t(*this); |
306
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1567 |
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1568 ResourceType rtype; |
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1569 int64_t id; |
1294 | 1570 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1571 { |
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1572 throw OrthancException(ErrorCode_UnknownResource); |
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1573 } |
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1574 |
1247 | 1575 db_.SetMetadata(id, type, value); |
1773
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1576 |
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1577 if (IsUserMetadata(type)) |
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1578 { |
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1579 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1580 } |
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1581 |
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|
1582 t.Commit(0); |
306
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1583 } |
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1584 |
438 | 1585 |
1586 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
1587 MetadataType type) | |
1588 { | |
1589 boost::mutex::scoped_lock lock(mutex_); | |
1773
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|
1590 Transaction t(*this); |
438 | 1591 |
1592 ResourceType rtype; | |
1593 int64_t id; | |
1294 | 1594 if (!db_.LookupResource(id, rtype, publicId)) |
438 | 1595 { |
1596 throw OrthancException(ErrorCode_UnknownResource); | |
1597 } | |
1598 | |
1247 | 1599 db_.DeleteMetadata(id, type); |
1773
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1600 |
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1601 if (IsUserMetadata(type)) |
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1602 { |
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1603 LogChange(id, ChangeType_UpdatedMetadata, rtype, publicId); |
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1604 } |
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1605 |
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|
1606 t.Commit(0); |
438 | 1607 } |
1608 | |
1609 | |
306
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1610 bool ServerIndex::LookupMetadata(std::string& target, |
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1611 const std::string& publicId, |
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1612 MetadataType type) |
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1613 { |
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1614 boost::mutex::scoped_lock lock(mutex_); |
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1615 |
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1616 ResourceType rtype; |
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1617 int64_t id; |
1294 | 1618 if (!db_.LookupResource(id, rtype, publicId)) |
306
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1619 { |
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1620 throw OrthancException(ErrorCode_UnknownResource); |
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1621 } |
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1622 |
1247 | 1623 return db_.LookupMetadata(target, id, type); |
306
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1624 } |
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1625 |
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1626 |
739 | 1627 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
436
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1628 const std::string& publicId) |
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1629 { |
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1630 boost::mutex::scoped_lock lock(mutex_); |
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1631 |
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1632 ResourceType rtype; |
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1633 int64_t id; |
1294 | 1634 if (!db_.LookupResource(id, rtype, publicId)) |
436
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1635 { |
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1636 throw OrthancException(ErrorCode_UnknownResource); |
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1637 } |
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1638 |
1247 | 1639 db_.ListAvailableMetadata(target, id); |
436
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1640 } |
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1641 |
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1642 |
697
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|
1643 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
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|
1644 const std::string& publicId, |
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|
1645 ResourceType expectedType) |
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1646 { |
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|
1647 boost::mutex::scoped_lock lock(mutex_); |
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1648 |
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1649 ResourceType type; |
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|
1650 int64_t id; |
1294 | 1651 if (!db_.LookupResource(id, type, publicId) || |
697
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1652 expectedType != type) |
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|
1653 { |
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|
1654 throw OrthancException(ErrorCode_UnknownResource); |
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1655 } |
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diff
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|
1656 |
1247 | 1657 db_.ListAvailableAttachments(target, id); |
697
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1658 } |
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|
1659 |
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1660 |
306
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1661 bool ServerIndex::LookupParent(std::string& target, |
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1662 const std::string& publicId) |
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1663 { |
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1664 boost::mutex::scoped_lock lock(mutex_); |
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1665 |
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1666 ResourceType type; |
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1667 int64_t id; |
1294 | 1668 if (!db_.LookupResource(id, type, publicId)) |
306
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1669 { |
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1670 throw OrthancException(ErrorCode_UnknownResource); |
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1671 } |
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1672 |
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1673 int64_t parentId; |
1247 | 1674 if (db_.LookupParent(parentId, id)) |
306
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1675 { |
1247 | 1676 target = db_.GetPublicId(parentId); |
306
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1677 return true; |
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1678 } |
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1679 else |
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1680 { |
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1681 return false; |
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1682 } |
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1683 } |
310 | 1684 |
1685 | |
1686 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
1687 { | |
1688 boost::mutex::scoped_lock lock(mutex_); | |
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1689 Transaction transaction(*this); |
311 | 1690 |
1237 | 1691 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
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1692 transaction.Commit(0); |
311 | 1693 |
1694 return seq; | |
310 | 1695 } |
315 | 1696 |
1697 | |
1698 | |
1699 void ServerIndex::LogChange(ChangeType changeType, | |
1700 const std::string& publicId) | |
1701 { | |
1702 boost::mutex::scoped_lock lock(mutex_); | |
1310
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1703 Transaction transaction(*this); |
315 | 1704 |
1705 int64_t id; | |
1706 ResourceType type; | |
1294 | 1707 if (!db_.LookupResource(id, type, publicId)) |
315 | 1708 { |
1709 throw OrthancException(ErrorCode_UnknownResource); | |
1710 } | |
1711 | |
1237 | 1712 LogChange(id, changeType, type, publicId); |
1310
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1713 transaction.Commit(0); |
315 | 1714 } |
413
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1715 |
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1716 |
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1717 void ServerIndex::DeleteChanges() |
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1718 { |
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1719 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1720 db_.ClearChanges(); |
413
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1721 } |
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1722 |
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1723 void ServerIndex::DeleteExportedResources() |
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1724 { |
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|
1725 boost::mutex::scoped_lock lock(mutex_); |
1286 | 1726 db_.ClearExportedResources(); |
413
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1727 } |
440
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1728 |
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1729 |
646 | 1730 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
1731 /* out */ uint64_t& uncompressedSize, | |
1732 /* out */ unsigned int& countStudies, | |
1733 /* out */ unsigned int& countSeries, | |
1734 /* out */ unsigned int& countInstances, | |
1735 /* in */ int64_t id, | |
1736 /* in */ ResourceType type) | |
440
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1737 { |
646 | 1738 std::stack<int64_t> toExplore; |
1739 toExplore.push(id); | |
440
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1740 |
646 | 1741 countInstances = 0; |
1742 countSeries = 0; | |
1743 countStudies = 0; | |
1744 compressedSize = 0; | |
1745 uncompressedSize = 0; | |
440
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1746 |
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1747 while (!toExplore.empty()) |
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1748 { |
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1749 // Get the internal ID of the current resource |
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1750 int64_t resource = toExplore.top(); |
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1751 toExplore.pop(); |
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1752 |
1247 | 1753 ResourceType thisType = db_.GetResourceType(resource); |
440
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1754 |
702
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1755 std::list<FileContentType> f; |
1247 | 1756 db_.ListAvailableAttachments(f, resource); |
702
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1757 |
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1758 for (std::list<FileContentType>::const_iterator |
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1759 it = f.begin(); it != f.end(); ++it) |
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1760 { |
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1761 FileInfo attachment; |
1247 | 1762 if (db_.LookupAttachment(attachment, resource, *it)) |
702
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1763 { |
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1764 compressedSize += attachment.GetCompressedSize(); |
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1765 uncompressedSize += attachment.GetUncompressedSize(); |
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1766 } |
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1767 } |
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1768 |
440
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1769 if (thisType == ResourceType_Instance) |
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1770 { |
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1771 countInstances++; |
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1772 } |
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1773 else |
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1774 { |
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1775 switch (thisType) |
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1776 { |
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1777 case ResourceType_Study: |
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1778 countStudies++; |
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1779 break; |
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1780 |
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1781 case ResourceType_Series: |
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1782 countSeries++; |
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1783 break; |
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1784 |
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1785 default: |
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1786 break; |
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1787 } |
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1788 |
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1789 // Tag all the children of this resource as to be explored |
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1790 std::list<int64_t> tmp; |
1247 | 1791 db_.GetChildrenInternalId(tmp, resource); |
440
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1792 for (std::list<int64_t>::const_iterator |
656 | 1793 it = tmp.begin(); it != tmp.end(); ++it) |
440
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1794 { |
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1795 toExplore.push(*it); |
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1796 } |
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1797 } |
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1798 } |
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1799 |
646 | 1800 if (countStudies == 0) |
1801 { | |
1802 countStudies = 1; | |
1803 } | |
1804 | |
1805 if (countSeries == 0) | |
1806 { | |
1807 countSeries = 1; | |
1808 } | |
1809 } | |
1810 | |
1811 | |
1812 | |
1813 void ServerIndex::GetStatistics(Json::Value& target, | |
1814 const std::string& publicId) | |
1815 { | |
1816 boost::mutex::scoped_lock lock(mutex_); | |
1817 | |
1818 ResourceType type; | |
1819 int64_t top; | |
1294 | 1820 if (!db_.LookupResource(top, type, publicId)) |
646 | 1821 { |
1822 throw OrthancException(ErrorCode_UnknownResource); | |
1823 } | |
1824 | |
1825 uint64_t uncompressedSize; | |
1826 uint64_t compressedSize; | |
1827 unsigned int countStudies; | |
1828 unsigned int countSeries; | |
1829 unsigned int countInstances; | |
1830 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1831 countSeries, countInstances, top, type); | |
1832 | |
440
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1833 target = Json::objectValue; |
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1834 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
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1835 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
440
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1836 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1837 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
440
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1838 |
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1839 switch (type) |
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1840 { |
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1841 // Do NOT add "break" below this point! |
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1842 case ResourceType_Patient: |
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1843 target["CountStudies"] = countStudies; |
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1844 |
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1845 case ResourceType_Study: |
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1846 target["CountSeries"] = countSeries; |
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1847 |
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1848 case ResourceType_Series: |
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1849 target["CountInstances"] = countInstances; |
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1850 |
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1851 case ResourceType_Instance: |
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1852 default: |
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1853 break; |
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1854 } |
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1855 } |
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1856 |
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1857 |
646 | 1858 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
1859 /* out */ uint64_t& uncompressedSize, | |
1860 /* out */ unsigned int& countStudies, | |
1861 /* out */ unsigned int& countSeries, | |
1862 /* out */ unsigned int& countInstances, | |
1863 const std::string& publicId) | |
1864 { | |
1865 boost::mutex::scoped_lock lock(mutex_); | |
1866 | |
1867 ResourceType type; | |
1868 int64_t top; | |
1294 | 1869 if (!db_.LookupResource(top, type, publicId)) |
646 | 1870 { |
1871 throw OrthancException(ErrorCode_UnknownResource); | |
1872 } | |
1873 | |
1874 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
1875 countSeries, countInstances, top, type); | |
1876 } | |
1877 | |
1878 | |
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1879 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
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1880 { |
2069
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1881 int stableAge = Configuration::GetGlobalUnsignedIntegerParameter("StableAge", 60); |
511
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1882 if (stableAge <= 0) |
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1883 { |
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1884 stableAge = 60; |
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1885 } |
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1886 |
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1887 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
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1888 |
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1889 while (!that->done_) |
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1890 { |
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1891 // Check for stable resources each second |
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1892 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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1893 |
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1894 boost::mutex::scoped_lock lock(that->mutex_); |
513 | 1895 |
511
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1896 while (!that->unstableResources_.IsEmpty() && |
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1897 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1898 { |
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1899 // This DICOM resource has not received any new instance for |
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1900 // some time. It can be considered as stable. |
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1901 |
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1902 UnstableResourcePayload payload; |
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1903 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1904 |
513 | 1905 // Ensure that the resource is still existing before logging the change |
1247 | 1906 if (that->db_.IsExistingResource(id)) |
511
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1907 { |
1177
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1908 switch (payload.GetResourceType()) |
513 | 1909 { |
1177
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1910 case ResourceType_Patient: |
1237 | 1911 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
513 | 1912 break; |
511
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1913 |
1177
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1914 case ResourceType_Study: |
1237 | 1915 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
513 | 1916 break; |
511
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1917 |
1177
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1918 case ResourceType_Series: |
1237 | 1919 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
513 | 1920 break; |
1921 | |
1922 default: | |
1923 throw OrthancException(ErrorCode_InternalError); | |
1924 } | |
1925 | |
1926 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
511
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1927 } |
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1928 } |
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1929 } |
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1930 |
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1931 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1932 } |
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1933 |
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1934 |
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1935 void ServerIndex::MarkAsUnstable(int64_t id, |
1177
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1936 Orthanc::ResourceType type, |
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1937 const std::string& publicId) |
511
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1938 { |
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1939 // WARNING: Before calling this method, "mutex_" must be locked. |
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1940 |
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1941 assert(type == Orthanc::ResourceType_Patient || |
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1942 type == Orthanc::ResourceType_Study || |
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1943 type == Orthanc::ResourceType_Series); |
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1944 |
1177
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1945 UnstableResourcePayload payload(type, publicId); |
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1946 unstableResources_.AddOrMakeMostRecent(id, payload); |
511
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1947 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
1189
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NewChildInstance change type
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1948 |
1237 | 1949 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
511
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1950 } |
521 | 1951 |
1952 | |
1953 | |
1728
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1954 void ServerIndex::LookupIdentifierExact(std::list<std::string>& result, |
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1955 ResourceType level, |
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1956 const DicomTag& tag, |
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1957 const std::string& value) |
615 | 1958 { |
1727 | 1959 assert((level == ResourceType_Patient && tag == DICOM_TAG_PATIENT_ID) || |
1960 (level == ResourceType_Study && tag == DICOM_TAG_STUDY_INSTANCE_UID) || | |
1961 (level == ResourceType_Study && tag == DICOM_TAG_ACCESSION_NUMBER) || | |
1962 (level == ResourceType_Series && tag == DICOM_TAG_SERIES_INSTANCE_UID) || | |
1963 (level == ResourceType_Instance && tag == DICOM_TAG_SOP_INSTANCE_UID)); | |
1725 | 1964 |
615 | 1965 result.clear(); |
1966 | |
1967 boost::mutex::scoped_lock lock(mutex_); | |
1968 | |
1746 | 1969 LookupIdentifierQuery query(level); |
1970 query.AddConstraint(tag, IdentifierConstraintType_Equal, value); | |
1971 query.Apply(result, db_); | |
615 | 1972 } |
1973 | |
1974 | |
699
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1975 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1976 const std::string& publicId) |
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1977 { |
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1978 boost::mutex::scoped_lock lock(mutex_); |
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1979 |
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1980 Transaction t(*this); |
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1981 |
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1982 ResourceType resourceType; |
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1983 int64_t resourceId; |
1294 | 1984 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
699
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1985 { |
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1986 return StoreStatus_Failure; // Inexistent resource |
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1987 } |
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1988 |
704
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1989 // Remove possible previous attachment |
1247 | 1990 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
699
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1991 |
704
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1992 // Locate the patient of the target resource |
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1993 int64_t patientId = resourceId; |
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|
1994 for (;;) |
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|
1995 { |
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|
1996 int64_t parent; |
1247 | 1997 if (db_.LookupParent(parent, patientId)) |
704
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|
1998 { |
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|
1999 // We have not reached the patient level yet |
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2000 patientId = parent; |
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|
2001 } |
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|
2002 else |
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2003 { |
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|
2004 // We have reached the patient level |
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|
2005 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2006 } |
4789da60d655
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2007 } |
4789da60d655
recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
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702
diff
changeset
|
2008 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2009 // Possibly apply the recycling mechanism while preserving this patient |
1247 | 2010 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
2011 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
704
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recycling with custom attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
702
diff
changeset
|
2012 |
1247 | 2013 db_.AddAttachment(resourceId, attachment); |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2014 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2015 if (IsUserContentType(attachment.GetContentType())) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2016 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2017 LogChange(resourceId, ChangeType_UpdatedAttachment, resourceType, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2018 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2019 |
699
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2020 t.Commit(attachment.GetCompressedSize()); |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2021 |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2022 return StoreStatus_Success; |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2023 } |
2929e17f8447
add attachments to resources
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
697
diff
changeset
|
2024 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2025 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2026 void ServerIndex::DeleteAttachment(const std::string& publicId, |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2027 FileContentType type) |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2028 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2029 boost::mutex::scoped_lock lock(mutex_); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2030 Transaction t(*this); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2031 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2032 ResourceType rtype; |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2033 int64_t id; |
1294 | 2034 if (!db_.LookupResource(id, rtype, publicId)) |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2035 { |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2036 throw OrthancException(ErrorCode_UnknownResource); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2037 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2038 |
1247 | 2039 db_.DeleteAttachment(id, type); |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2040 |
1773
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2041 if (IsUserContentType(type)) |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2042 { |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2043 LogChange(id, ChangeType_UpdatedAttachment, rtype, publicId); |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2044 } |
613df4362575
New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1757
diff
changeset
|
2045 |
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2046 t.Commit(0); |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2047 } |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2048 |
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
2049 |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2050 bool ServerIndex::GetMetadata(Json::Value& target, |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2051 const std::string& publicId) |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2052 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2053 boost::mutex::scoped_lock lock(mutex_); |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2054 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2055 target = Json::objectValue; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2056 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2057 ResourceType type; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2058 int64_t id; |
1294 | 2059 if (!db_.LookupResource(id, type, publicId)) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2060 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2061 return false; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2062 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2063 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2064 std::list<MetadataType> metadata; |
1247 | 2065 db_.ListAvailableMetadata(metadata, id); |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2066 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2067 for (std::list<MetadataType>::const_iterator |
1304 | 2068 it = metadata.begin(); it != metadata.end(); ++it) |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2069 { |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2070 std::string key = EnumerationToString(*it); |
1238 | 2071 |
2072 std::string value; | |
1247 | 2073 if (!db_.LookupMetadata(value, id, *it)) |
1238 | 2074 { |
2075 value.clear(); | |
2076 } | |
2077 | |
1002
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2078 target[key] = value; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2079 } |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2080 |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2081 return true; |
b067017a8a5b
anonymization refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2082 } |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2083 |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2084 |
1249
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2085 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2086 const std::string& value) |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2087 { |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2088 boost::mutex::scoped_lock lock(mutex_); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2089 db_.SetGlobalProperty(property, value); |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2090 } |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2091 |
40725595aaf0
Plugins can get/set global properties to save their configuration
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1247
diff
changeset
|
2092 |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2093 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2094 const std::string& defaultValue) |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2095 { |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2096 boost::mutex::scoped_lock lock(mutex_); |
1239 | 2097 |
2098 std::string value; | |
1247 | 2099 if (db_.LookupGlobalProperty(value, property)) |
1239 | 2100 { |
2101 return value; | |
2102 } | |
2103 else | |
2104 { | |
2105 return defaultValue; | |
2106 } | |
1218
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2107 } |
efece308018e
report database version in /system
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1198
diff
changeset
|
2108 |
1352 | 2109 |
2110 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
2111 const std::string& publicId, | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2112 ResourceType expectedType, |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2113 ResourceType levelOfInterest) |
1352 | 2114 { |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2115 // Yes, the following test could be shortened, but we wish to make it as clear as possible |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2116 if (!(expectedType == ResourceType_Patient && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2117 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Patient) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2118 !(expectedType == ResourceType_Study && levelOfInterest == ResourceType_Study) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2119 !(expectedType == ResourceType_Series && levelOfInterest == ResourceType_Series) && |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2120 !(expectedType == ResourceType_Instance && levelOfInterest == ResourceType_Instance)) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2121 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2122 throw OrthancException(ErrorCode_ParameterOutOfRange); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2123 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2124 |
1352 | 2125 result.Clear(); |
2126 | |
2127 boost::mutex::scoped_lock lock(mutex_); | |
2128 | |
2129 // Lookup for the requested resource | |
2130 int64_t id; | |
2131 ResourceType type; | |
2132 if (!db_.LookupResource(id, type, publicId) || | |
2133 type != expectedType) | |
2134 { | |
2135 return false; | |
2136 } | |
1677
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2137 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2138 if (type == ResourceType_Study) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2139 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2140 DicomMap tmp; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2141 db_.GetMainDicomTags(tmp, id); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2142 |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2143 switch (levelOfInterest) |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2144 { |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2145 case ResourceType_Patient: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2146 tmp.ExtractPatientInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2147 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2148 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
1676
diff
changeset
|
2149 case ResourceType_Study: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2150 tmp.ExtractStudyInformation(result); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2151 return true; |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2152 |
a903d57d9f0c
adaptation of search with patient tags at study level
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parents:
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diff
changeset
|
2153 default: |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2154 throw OrthancException(ErrorCode_InternalError); |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1676
diff
changeset
|
2155 } |
a903d57d9f0c
adaptation of search with patient tags at study level
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2156 } |
1352 | 2157 else |
2158 { | |
2159 db_.GetMainDicomTags(result, id); | |
2160 return true; | |
2161 } | |
2162 } | |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2163 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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1509
diff
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|
2164 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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1509
diff
changeset
|
2165 bool ServerIndex::LookupResourceType(ResourceType& type, |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2166 const std::string& publicId) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2167 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2168 boost::mutex::scoped_lock lock(mutex_); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
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|
2169 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2170 int64_t id; |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2171 return db_.LookupResource(id, type, publicId); |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2172 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2173 |
1668
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
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|
2174 |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
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|
2175 unsigned int ServerIndex::GetDatabaseVersion() |
de1413733c97
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2176 { |
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reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
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|
2177 boost::mutex::scoped_lock lock(mutex_); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2178 return db_.GetDatabaseVersion(); |
de1413733c97
reconstructing main dicom tags
Sebastien Jodogne <s.jodogne@gmail.com>
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1555
diff
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|
2179 } |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
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|
2180 |
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
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1747
diff
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|
2181 |
1753 | 2182 void ServerIndex::FindCandidates(std::vector<std::string>& resources, |
2183 std::vector<std::string>& instances, | |
1757
98abb8d7f905
ServerContext::Apply lookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1754
diff
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|
2184 const ::Orthanc::LookupResource& lookup) |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
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|
2185 { |
1753 | 2186 boost::mutex::scoped_lock lock(mutex_); |
2187 | |
2188 std::list<int64_t> tmp; | |
2189 lookup.FindCandidates(tmp, db_); | |
2190 | |
2191 resources.resize(tmp.size()); | |
2192 instances.resize(tmp.size()); | |
2193 | |
2194 size_t pos = 0; | |
2195 for (std::list<int64_t>::const_iterator | |
2196 it = tmp.begin(); it != tmp.end(); ++it, pos++) | |
2197 { | |
1754 | 2198 assert(db_.GetResourceType(*it) == lookup.GetLevel()); |
2199 | |
1753 | 2200 int64_t instance; |
2120 | 2201 if (!ServerToolbox::FindOneChildInstance(instance, db_, *it, lookup.GetLevel())) |
1753 | 2202 { |
2203 throw OrthancException(ErrorCode_InternalError); | |
2204 } | |
2205 | |
2206 resources[pos] = db_.GetPublicId(*it); | |
2207 instances[pos] = db_.GetPublicId(instance); | |
2208 } | |
1750
55d52567bebb
LookupResource implemented
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1747
diff
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|
2209 } |
1898
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
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1823
diff
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|
2210 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
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|
2211 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2212 bool ServerIndex::LookupParent(std::string& target, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2213 const std::string& publicId, |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2214 ResourceType parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2215 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2216 boost::mutex::scoped_lock lock(mutex_); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2217 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2218 ResourceType type; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2219 int64_t id; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2220 if (!db_.LookupResource(id, type, publicId)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2221 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2222 throw OrthancException(ErrorCode_UnknownResource); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2223 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2224 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2225 while (type != parentType) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2226 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2227 int64_t parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2228 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2229 if (type == ResourceType_Patient || // Cannot further go up in hierarchy |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2230 !db_.LookupParent(parentId, id)) |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2231 { |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2232 return false; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2233 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2234 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2235 id = parentId; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2236 type = GetParentResourceType(type); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2237 } |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2238 |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2239 target = db_.GetPublicId(id); |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2240 return true; |
e018037d4d0e
Support of optional tags for counting resources in C-Find
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1823
diff
changeset
|
2241 } |
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2242 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2243 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2244 void ServerIndex::ReconstructInstance(ParsedDicomFile& dicom) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2245 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2246 DicomMap summary; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2247 dicom.ExtractDicomSummary(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2248 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2249 DicomInstanceHasher hasher(summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2250 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2251 boost::mutex::scoped_lock lock(mutex_); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2252 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2253 try |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2254 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2255 Transaction t(*this); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2256 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2257 int64_t patient = -1, study = -1, series = -1, instance = -1; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2258 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2259 ResourceType dummy; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2260 if (!db_.LookupResource(patient, dummy, hasher.HashPatient()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2261 !db_.LookupResource(study, dummy, hasher.HashStudy()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2262 !db_.LookupResource(series, dummy, hasher.HashSeries()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2263 !db_.LookupResource(instance, dummy, hasher.HashInstance()) || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2264 patient == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2265 study == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2266 series == -1 || |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2267 instance == -1) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2268 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2269 throw OrthancException(ErrorCode_InternalError); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2270 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2271 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2272 db_.ClearMainDicomTags(patient); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2273 db_.ClearMainDicomTags(study); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2274 db_.ClearMainDicomTags(series); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2275 db_.ClearMainDicomTags(instance); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2276 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2277 ServerToolbox::StoreMainDicomTags(db_, patient, ResourceType_Patient, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2278 ServerToolbox::StoreMainDicomTags(db_, study, ResourceType_Study, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2279 ServerToolbox::StoreMainDicomTags(db_, series, ResourceType_Series, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2280 ServerToolbox::StoreMainDicomTags(db_, instance, ResourceType_Instance, summary); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2281 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2282 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2283 std::string s; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2284 if (dicom.LookupTransferSyntax(s)) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2285 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2286 db_.SetMetadata(instance, MetadataType_Instance_TransferSyntax, s); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2287 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2288 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2289 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2290 const DicomValue* value; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
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2291 if ((value = summary.TestAndGetValue(DICOM_TAG_SOP_CLASS_UID)) != NULL && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
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2292 !value->IsNull() && |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
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|
2293 !value->IsBinary()) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2294 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2295 db_.SetMetadata(instance, MetadataType_Instance_SopClassUid, value->GetContent()); |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2296 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
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changeset
|
2297 |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2298 t.Commit(0); // No change in the DB size |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
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2299 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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2300 catch (OrthancException& e) |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2301 { |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2302 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
diff
changeset
|
2303 } |
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2208
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|
2304 } |
0 | 2305 } |