Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2843:4ee3a759afea
Fix: Closing DICOM associations after running query/retrieve from REST API
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 27 Sep 2018 13:22:57 +0200 |
parents | 8aa6aef11b70 |
children | 99863d6245b2 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
2642 | 37 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../../Core/Logging.h" |
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39 #include "../ServerContext.h" |
2642 | 40 #include "../ServerJobs/ResourceModificationJob.h" |
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41 |
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42 #include <boost/lexical_cast.hpp> |
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43 #include <boost/algorithm/string/predicate.hpp> |
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44 |
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45 namespace Orthanc |
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46 { |
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47 // Modification of DICOM instances ------------------------------------------ |
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48 |
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49 |
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50 static std::string GeneratePatientName(ServerContext& context) |
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51 { |
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52 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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53 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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54 } |
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55 |
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56 |
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57 static int GetPriority(const Json::Value& request) |
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58 { |
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59 static const char* PRIORITY = "Priority"; |
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60 |
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61 if (request.isMember(PRIORITY)) |
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62 { |
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63 if (request[PRIORITY].type() == Json::intValue) |
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64 { |
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65 return request[PRIORITY].asInt(); |
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66 } |
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67 else |
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68 { |
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69 LOG(ERROR) << "Field \"" << PRIORITY << "\" of a modification request should be an integer"; |
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70 throw OrthancException(ErrorCode_BadFileFormat); |
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71 } |
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72 } |
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73 else |
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74 { |
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75 return 0; // Default priority |
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76 } |
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77 } |
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78 |
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79 |
2517 | 80 static void ParseModifyRequest(DicomModification& target, |
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81 int& priority, |
2517 | 82 const RestApiPostCall& call) |
83 { | |
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84 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}' |
2517 | 85 |
86 Json::Value request; | |
87 if (call.ParseJsonRequest(request)) | |
88 { | |
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89 priority = GetPriority(request); |
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90 target.ParseModifyRequest(request); |
2517 | 91 } |
92 else | |
93 { | |
94 throw OrthancException(ErrorCode_BadFileFormat); | |
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95 } |
2517 | 96 } |
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97 |
2517 | 98 |
99 static void ParseAnonymizationRequest(DicomModification& target, | |
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100 int& priority, |
2517 | 101 RestApiPostCall& call) |
102 { | |
103 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
104 | |
105 Json::Value request; | |
106 if (call.ParseJsonRequest(request) && | |
107 request.isObject()) | |
108 { | |
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109 priority = GetPriority(request); |
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110 |
2518 | 111 bool patientNameReplaced; |
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112 target.ParseAnonymizationRequest(patientNameReplaced, request); |
2518 | 113 |
114 if (patientNameReplaced) | |
115 { | |
116 // Overwrite the random Patient's Name by one that is more | |
117 // user-friendly (provided none was specified by the user) | |
118 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); | |
119 } | |
2517 | 120 } |
121 else | |
122 { | |
123 throw OrthancException(ErrorCode_BadFileFormat); | |
124 } | |
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125 } |
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126 |
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127 |
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128 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 129 RestApiPostCall& call) |
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130 { |
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131 std::string id = call.GetUriComponent("id", ""); |
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132 |
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133 std::auto_ptr<ParsedDicomFile> modified; |
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134 |
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135 { |
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136 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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137 modified.reset(locker.GetDicom().Clone(true)); |
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138 } |
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139 |
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140 modification.Apply(*modified); |
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141 modified->Answer(call.GetOutput()); |
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142 } |
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143 |
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144 |
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145 |
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146 static void SubmitJob(std::auto_ptr<DicomModification>& modification, |
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147 bool isAnonymization, |
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148 ResourceType level, |
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149 int priority, |
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150 RestApiPostCall& call) |
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151 { |
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152 ServerContext& context = OrthancRestApi::GetContext(call); |
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153 |
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154 std::auto_ptr<ResourceModificationJob> job(new ResourceModificationJob(context)); |
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155 |
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156 boost::shared_ptr<ResourceModificationJob::Output> output(new ResourceModificationJob::Output(level)); |
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157 job->SetModification(modification.release(), isAnonymization); |
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158 job->SetOutput(output); |
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159 job->SetOrigin(call); |
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160 job->SetDescription("REST API"); |
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161 |
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162 context.AddChildInstances(*job, call.GetUriComponent("id", "")); |
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163 |
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164 if (context.GetJobsEngine().GetRegistry().SubmitAndWait(job.release(), priority)) |
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165 { |
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166 Json::Value json; |
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167 if (output->Format(json)) |
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168 { |
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169 call.GetOutput().AnswerJson(json); |
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170 return; |
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171 } |
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172 } |
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173 |
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174 call.GetOutput().SignalError(HttpStatus_500_InternalServerError); |
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175 } |
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176 |
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177 |
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178 |
974 | 179 static void ModifyInstance(RestApiPostCall& call) |
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180 { |
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181 DicomModification modification; |
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182 modification.SetAllowManualIdentifiers(true); |
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183 |
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184 int priority; |
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185 ParseModifyRequest(modification, priority, call); |
2517 | 186 |
187 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
188 { | |
189 modification.SetLevel(ResourceType_Patient); | |
190 } | |
191 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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192 { |
2517 | 193 modification.SetLevel(ResourceType_Study); |
194 } | |
195 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
196 { | |
197 modification.SetLevel(ResourceType_Series); | |
198 } | |
199 else | |
200 { | |
201 modification.SetLevel(ResourceType_Instance); | |
202 } | |
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203 |
2517 | 204 AnonymizeOrModifyInstance(modification, call); |
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205 } |
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206 |
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207 |
974 | 208 static void AnonymizeInstance(RestApiPostCall& call) |
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209 { |
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210 DicomModification modification; |
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211 modification.SetAllowManualIdentifiers(true); |
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212 |
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213 int priority; |
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214 ParseAnonymizationRequest(modification, priority, call); |
2517 | 215 |
216 AnonymizeOrModifyInstance(modification, call); | |
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217 } |
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218 |
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219 |
2639 | 220 template <enum ResourceType resourceType> |
974 | 221 static void ModifyResource(RestApiPostCall& call) |
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222 { |
2639 | 223 std::auto_ptr<DicomModification> modification(new DicomModification); |
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224 |
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225 int priority; |
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226 ParseModifyRequest(*modification, priority, call); |
2517 | 227 |
2639 | 228 modification->SetLevel(resourceType); |
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229 SubmitJob(modification, false, resourceType, priority, call); |
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230 } |
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231 |
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232 |
2639 | 233 template <enum ResourceType resourceType> |
974 | 234 static void AnonymizeResource(RestApiPostCall& call) |
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235 { |
2639 | 236 std::auto_ptr<DicomModification> modification(new DicomModification); |
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237 |
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238 int priority; |
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239 ParseAnonymizationRequest(*modification, priority, call); |
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240 |
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241 SubmitJob(modification, true, resourceType, priority, call); |
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242 } |
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243 |
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244 |
1569 | 245 static void StoreCreatedInstance(std::string& id /* out */, |
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246 RestApiPostCall& call, |
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247 ParsedDicomFile& dicom) |
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248 { |
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249 DicomInstanceToStore toStore; |
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250 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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251 toStore.SetParsedDicomFile(dicom); |
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252 |
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253 ServerContext& context = OrthancRestApi::GetContext(call); |
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254 StoreStatus status = context.Store(id, toStore); |
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255 |
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256 if (status == StoreStatus_Failure) |
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257 { |
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258 throw OrthancException(ErrorCode_CannotStoreInstance); |
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259 } |
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260 } |
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261 |
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262 |
1569 | 263 static void CreateDicomV1(ParsedDicomFile& dicom, |
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264 RestApiPostCall& call, |
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265 const Json::Value& request) |
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266 { |
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267 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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268 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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269 |
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270 assert(request.isObject()); |
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271 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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272 |
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273 Json::Value::Members members = request.getMemberNames(); |
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274 for (size_t i = 0; i < members.size(); i++) |
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275 { |
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276 const std::string& name = members[i]; |
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277 if (request[name].type() != Json::stringValue) |
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278 { |
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279 throw OrthancException(ErrorCode_CreateDicomNotString); |
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280 } |
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281 |
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282 std::string value = request[name].asString(); |
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283 |
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284 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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285 if (tag == DICOM_TAG_PIXEL_DATA) |
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286 { |
1562 | 287 dicom.EmbedContent(value); |
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288 } |
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289 else |
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290 { |
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291 // This is V1, don't try and decode data URI scheme |
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292 dicom.ReplacePlainString(tag, value); |
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293 } |
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294 } |
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295 } |
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296 |
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297 |
1569 | 298 static void InjectTags(ParsedDicomFile& dicom, |
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299 const Json::Value& tags, |
1689 | 300 bool decodeBinaryTags) |
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301 { |
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302 if (tags.type() != Json::objectValue) |
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303 { |
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304 throw OrthancException(ErrorCode_BadRequest); |
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305 } |
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306 |
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307 // Inject the user-specified tags |
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308 Json::Value::Members members = tags.getMemberNames(); |
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309 for (size_t i = 0; i < members.size(); i++) |
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310 { |
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311 const std::string& name = members[i]; |
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312 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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313 |
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314 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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315 { |
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316 if (tag != DICOM_TAG_PATIENT_ID && |
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317 tag != DICOM_TAG_ACQUISITION_DATE && |
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318 tag != DICOM_TAG_ACQUISITION_TIME && |
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319 tag != DICOM_TAG_CONTENT_DATE && |
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320 tag != DICOM_TAG_CONTENT_TIME && |
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321 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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322 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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323 tag != DICOM_TAG_SERIES_DATE && |
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324 tag != DICOM_TAG_SERIES_TIME && |
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325 tag != DICOM_TAG_STUDY_DATE && |
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326 tag != DICOM_TAG_STUDY_TIME && |
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327 dicom.HasTag(tag)) |
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328 { |
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329 throw OrthancException(ErrorCode_CreateDicomOverrideTag); |
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330 } |
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331 |
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332 if (tag == DICOM_TAG_PIXEL_DATA) |
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333 { |
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334 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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335 } |
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336 else |
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337 { |
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338 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
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339 } |
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340 } |
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341 } |
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342 } |
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343 |
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344 |
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345 static void CreateSeries(RestApiPostCall& call, |
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346 ParsedDicomFile& base /* in */, |
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347 const Json::Value& content, |
1689 | 348 bool decodeBinaryTags) |
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349 { |
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350 assert(content.isArray()); |
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351 assert(content.size() > 0); |
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352 ServerContext& context = OrthancRestApi::GetContext(call); |
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353 |
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354 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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355 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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356 |
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357 std::string someInstance; |
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358 |
1566 | 359 try |
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360 { |
1569 | 361 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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362 { |
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363 std::auto_ptr<ParsedDicomFile> dicom(base.Clone(false)); |
1566 | 364 const Json::Value* payload = NULL; |
365 | |
366 if (content[i].type() == Json::stringValue) | |
367 { | |
368 payload = &content[i]; | |
369 } | |
370 else if (content[i].type() == Json::objectValue) | |
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371 { |
1566 | 372 if (!content[i].isMember("Content")) |
373 { | |
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374 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 375 } |
376 | |
377 payload = &content[i]["Content"]; | |
378 | |
1569 | 379 if (content[i].isMember("Tags")) |
1570 | 380 { |
1689 | 381 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 382 } |
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383 } |
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384 |
1566 | 385 if (payload == NULL || |
386 payload->type() != Json::stringValue) | |
387 { | |
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388 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 389 } |
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390 |
1566 | 391 dicom->EmbedContent(payload->asString()); |
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392 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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393 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 394 |
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395 StoreCreatedInstance(someInstance, call, *dicom); |
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396 } |
1566 | 397 } |
1616 | 398 catch (OrthancException&) |
1566 | 399 { |
1569 | 400 // Error: Remove the newly-created series |
401 | |
402 std::string series; | |
403 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 404 { |
1569 | 405 Json::Value dummy; |
406 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 407 } |
1569 | 408 |
1616 | 409 throw; |
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410 } |
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411 |
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412 std::string series; |
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413 if (context.GetIndex().LookupParent(series, someInstance)) |
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414 { |
1569 | 415 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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416 } |
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417 } |
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418 |
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419 |
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420 static void CreateDicomV2(RestApiPostCall& call, |
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421 const Json::Value& request) |
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422 { |
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423 assert(request.isObject()); |
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424 ServerContext& context = OrthancRestApi::GetContext(call); |
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425 |
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426 if (!request.isMember("Tags") || |
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427 request["Tags"].type() != Json::objectValue) |
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428 { |
1569 | 429 throw OrthancException(ErrorCode_BadRequest); |
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430 } |
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431 |
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432 ParsedDicomFile dicom(true); |
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433 |
1557 | 434 { |
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435 Encoding encoding; |
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436 |
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437 if (request["Tags"].isMember("SpecificCharacterSet")) |
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438 { |
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439 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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440 if (!GetDicomEncoding(encoding, tmp)) |
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441 { |
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442 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp); |
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443 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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444 } |
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445 } |
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446 else |
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447 { |
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448 encoding = GetDefaultDicomEncoding(); |
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449 } |
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450 |
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451 dicom.SetEncoding(encoding); |
1557 | 452 } |
453 | |
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454 ResourceType parentType = ResourceType_Instance; |
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455 |
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456 if (request.isMember("Parent")) |
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457 { |
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458 // Locate the parent tags |
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459 std::string parent = request["Parent"].asString(); |
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460 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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461 { |
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462 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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463 } |
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464 |
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465 if (parentType == ResourceType_Instance) |
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466 { |
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467 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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468 } |
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469 |
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470 // Select one existing child instance of the parent resource, to |
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471 // retrieve all its tags |
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472 Json::Value siblingTags; |
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473 |
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474 { |
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475 // Retrieve all the instances of the parent resource |
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476 std::list<std::string> siblingInstances; |
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477 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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478 |
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479 if (siblingInstances.empty()) |
1569 | 480 { |
481 // Error: No instance (should never happen) | |
482 throw OrthancException(ErrorCode_InternalError); | |
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483 } |
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484 |
2124 | 485 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
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486 } |
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487 |
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488 |
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489 // Choose the same encoding as the parent resource |
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490 { |
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491 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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492 |
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493 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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494 { |
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495 Encoding encoding; |
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496 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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497 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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498 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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499 { |
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500 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
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501 } |
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502 |
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503 dicom.SetEncoding(encoding); |
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504 } |
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505 } |
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506 |
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507 |
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508 // Retrieve the tags for all the parent modules |
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509 typedef std::set<DicomTag> ModuleTags; |
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510 ModuleTags moduleTags; |
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511 |
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512 ResourceType type = parentType; |
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513 for (;;) |
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514 { |
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515 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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516 |
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517 if (type == ResourceType_Patient) |
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518 { |
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519 break; // We're done |
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520 } |
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521 |
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522 // Go up |
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523 std::string tmp; |
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524 if (!context.GetIndex().LookupParent(tmp, parent)) |
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525 { |
1569 | 526 throw OrthancException(ErrorCode_InternalError); |
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527 } |
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528 |
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529 parent = tmp; |
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530 type = GetParentResourceType(type); |
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531 } |
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532 |
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533 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 534 it != moduleTags.end(); ++it) |
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535 { |
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536 std::string t = it->Format(); |
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537 if (siblingTags.isMember(t)) |
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538 { |
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539 const Json::Value& tag = siblingTags[t]; |
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540 if (tag["Type"] == "Null") |
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541 { |
1982
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542 dicom.ReplacePlainString(*it, ""); |
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543 } |
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Creation of DICOM files with encapsulated PDF
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544 else if (tag["Type"] == "String") |
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545 { |
1557 | 546 std::string value = tag["Value"].asString(); |
1982
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547 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
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548 } |
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549 } |
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550 } |
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551 } |
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552 |
1641
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553 |
1689 | 554 bool decodeBinaryTags = true; |
1641
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555 if (request.isMember("InterpretBinaryTags")) |
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556 { |
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557 const Json::Value& v = request["InterpretBinaryTags"]; |
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changeset
|
558 if (v.type() != Json::booleanValue) |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
559 { |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
560 throw OrthancException(ErrorCode_BadRequest); |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
561 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
562 |
1689 | 563 decodeBinaryTags = v.asBool(); |
1641
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
564 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1640
diff
changeset
|
565 |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
566 |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
567 // Inject time-related information |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
568 std::string date, time; |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
569 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
570 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
571 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
572 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
573 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
574 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
575 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
576 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
577 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
578 parentType == ResourceType_Study || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
579 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
580 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
581 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
582 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
583 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
584 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
585 if (parentType == ResourceType_Patient || |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
586 parentType == ResourceType_Instance /* no parent */) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
587 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
588 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
589 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
590 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
591 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
592 |
1689 | 593 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
594 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
595 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
596 // Inject the content (either an image, or a PDF file) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
597 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
598 { |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
599 const Json::Value& content = request["Content"]; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
600 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
601 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
602 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
603 dicom.EmbedContent(request["Content"].asString()); |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
604 |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
605 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
606 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
607 { |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
608 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
609 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1564
diff
changeset
|
610 // Let's create a series instead of a single instance |
1689 | 611 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
612 return; |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
613 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
614 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
615 else |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
616 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1572
diff
changeset
|
617 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
618 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
619 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
620 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
621 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
622 StoreCreatedInstance(id, call, dicom); |
1569 | 623 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
624 |
1564
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
625 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
626 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
627 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
628 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
629 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
630 { |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
631 Json::Value request; |
1569 | 632 if (!call.ParseJsonRequest(request) || |
633 !request.isObject()) | |
1570 | 634 { |
635 throw OrthancException(ErrorCode_BadRequest); | |
636 } | |
1569 | 637 |
638 if (request.isMember("Tags")) | |
1570 | 639 { |
640 CreateDicomV2(call, request); | |
641 } | |
1569 | 642 else |
1570 | 643 { |
644 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
645 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
646 CreateDicomV1(dicom, call, request); |
1569 | 647 |
1570 | 648 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
649 StoreCreatedInstance(id, call, dicom); |
1570 | 650 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
651 } | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
652 } |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
653 |
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
654 |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
655 void OrthancRestApi::RegisterAnonymizeModify() |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
656 { |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
657 Register("/instances/{id}/modify", ModifyInstance); |
2639 | 658 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>); |
659 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>); | |
660 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>); | |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
661 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
662 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2639 | 663 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>); |
664 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>); | |
665 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>); | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
666 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
667 Register("/tools/create-dicom", CreateDicom); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
668 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
669 } |