Mercurial > hg > orthanc

annotate OrthancServer/Sources/SliceOrdering.cpp @ 5497:4dd50c4b985a pg-transactions

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
merge default -> pg-transactions
author Alain Mazy <am@osimis.io>
date Tue, 23 Jan 2024 17:05:28 +0100
parents 48b8dae6dc77
children f7adfb22e20e
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1873
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
4 * Department, University Hospital of Liege, Belgium
5485
48b8dae6dc77 upgrade to year 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
5 * Copyright (C) 2017-2024 Osimis S.A., Belgium
48b8dae6dc77 upgrade to year 2024
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 5185
diff changeset
6 * Copyright (C) 2021-2024 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 *
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * This program is free software: you can redistribute it and/or
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * modify it under the terms of the GNU General Public License as
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * published by the Free Software Foundation, either version 3 of the
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 * License, or (at your option) any later version.
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 *
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * This program is distributed in the hope that it will be useful, but
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * WITHOUT ANY WARRANTY; without even the implied warranty of
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * General Public License for more details.
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 *
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * You should have received a copy of the GNU General Public License
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 **/
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 #include "PrecompiledHeadersServer.h"
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 #include "SliceOrdering.h"
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25
4045
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
26 #include "../../OrthancFramework/Sources/Logging.h"
05b8fd21089c fix path
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4044
diff changeset
27 #include "../../OrthancFramework/Sources/Toolbox.h"
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
28 #include "ServerEnumerations.h"
3097
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
29 #include "ServerIndex.h"
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
31 #include <algorithm>
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32 #include <boost/lexical_cast.hpp>
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
33 #include <boost/noncopyable.hpp>
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 namespace Orthanc
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 static bool TokenizeVector(std::vector<float>& result,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39 const std::string& value,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 unsigned int expectedSize)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 std::vector<std::string> tokens;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
43 Toolbox::TokenizeString(tokens, value, '\\');
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 if (tokens.size() != expectedSize)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 return false;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 result.resize(tokens.size());
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 for (size_t i = 0; i < tokens.size(); i++)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 try
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55 {
4142
0ea450e1f0ea "/series/.../ordered-slices" supports spaces in Image Position/Orientation Patient tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
56 const std::string token = Toolbox::StripSpaces(tokens[i]);
0ea450e1f0ea "/series/.../ordered-slices" supports spaces in Image Position/Orientation Patient tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
57 result[i] = boost::lexical_cast<float>(token);
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
58 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
59 catch (boost::bad_lexical_cast&)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
60 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
61 return false;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
62 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
63 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
64
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
65 return true;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
66 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
67
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
68
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
69 static bool TokenizeVector(std::vector<float>& result,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
70 const DicomMap& map,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
71 const DicomTag& tag,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
72 unsigned int expectedSize)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
73 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
74 const DicomValue* value = map.TestAndGetValue(tag);
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
75
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
76 if (value == NULL ||
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1703
diff changeset
77 value->IsNull() ||
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1703
diff changeset
78 value->IsBinary())
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
79 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 return false;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 else
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1703
diff changeset
84 return TokenizeVector(result, value->GetContent(), expectedSize);
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
85 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
86 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
88
2804
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
89 static bool IsCloseToZero(double x)
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
90 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
91 return fabs(x) < 10.0 * std::numeric_limits<float>::epsilon();
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
92 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
93
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
94
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
95 bool SliceOrdering::ComputeNormal(Vector& normal,
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
96 const DicomMap& dicom)
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
97 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
98 std::vector<float> cosines;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
99
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
100 if (TokenizeVector(cosines, dicom, DICOM_TAG_IMAGE_ORIENTATION_PATIENT, 6))
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
101 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
102 assert(cosines.size() == 6);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
103 normal[0] = cosines[1] * cosines[5] - cosines[2] * cosines[4];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
104 normal[1] = cosines[2] * cosines[3] - cosines[0] * cosines[5];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
105 normal[2] = cosines[0] * cosines[4] - cosines[1] * cosines[3];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
106 return true;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
107 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
108 else
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
109 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
110 return false;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
111 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
112 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
113
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
114
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
115 bool SliceOrdering::IsParallelOrOpposite(const Vector& u,
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
116 const Vector& v)
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
117 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
118 // Check out "GeometryToolbox::IsParallelOrOpposite()" in Stone of
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
119 // Orthanc for explanations
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
120 const double u1 = u[0];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
121 const double u2 = u[1];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
122 const double u3 = u[2];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
123 const double normU = sqrt(u1 * u1 + u2 * u2 + u3 * u3);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
124
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
125 const double v1 = v[0];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
126 const double v2 = v[1];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
127 const double v3 = v[2];
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
128 const double normV = sqrt(v1 * v1 + v2 * v2 + v3 * v3);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
129
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
130 if (IsCloseToZero(normU * normV))
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
131 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
132 return false;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
133 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
134 else
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
135 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
136 const double cosAngle = (u1 * v1 + u2 * v2 + u3 * v3) / (normU * normV);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
137
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
138 return (IsCloseToZero(cosAngle - 1.0) || // Close to +1: Parallel, non-opposite
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
139 IsCloseToZero(fabs(cosAngle) - 1.0)); // Close to -1: Parallel, opposite
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
140 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
141 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
142
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
143
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
144 struct SliceOrdering::Instance : public boost::noncopyable
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 {
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
146 private:
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 std::string instanceId_;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148 bool hasPosition_;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 Vector position_;
2804
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
150 bool hasNormal_;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
151 Vector normal_;
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 bool hasIndexInSeries_;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 size_t indexInSeries_;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
154 unsigned int framesCount_;
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
156 public:
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157 Instance(ServerIndex& index,
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
158 const std::string& instanceId) :
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
159 instanceId_(instanceId),
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
160 framesCount_(1)
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
161 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 DicomMap instance;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 if (!index.GetMainDicomTags(instance, instanceId, ResourceType_Instance, ResourceType_Instance))
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
164 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 throw OrthancException(ErrorCode_UnknownResource);
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 }
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
167
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
168 const DicomValue* frames = instance.TestAndGetValue(DICOM_TAG_NUMBER_OF_FRAMES);
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
169 if (frames != NULL &&
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1703
diff changeset
170 !frames->IsNull() &&
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1703
diff changeset
171 !frames->IsBinary())
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
172 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
173 try
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
174 {
4142
0ea450e1f0ea "/series/.../ordered-slices" supports spaces in Image Position/Orientation Patient tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
175 const std::string token = Toolbox::StripSpaces(frames->GetContent());
0ea450e1f0ea "/series/.../ordered-slices" supports spaces in Image Position/Orientation Patient tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4045
diff changeset
176 framesCount_ = boost::lexical_cast<unsigned int>(token);
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
177 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
178 catch (boost::bad_lexical_cast&)
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
179 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
180 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
181 }
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
183 std::vector<float> tmp;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 hasPosition_ = TokenizeVector(tmp, instance, DICOM_TAG_IMAGE_POSITION_PATIENT, 3);
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
185
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 if (hasPosition_)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 position_[0] = tmp[0];
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 position_[1] = tmp[1];
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
190 position_[2] = tmp[2];
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192
2804
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
193 hasNormal_ = ComputeNormal(normal_, instance);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
194
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 std::string s;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 hasIndexInSeries_ = false;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 try
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 {
4623
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
200 int64_t revision; // Ignored
95ffe3b6ef7c handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4460
diff changeset
201 if (index.LookupMetadata(s, revision, instanceId, ResourceType_Instance, MetadataType_Instance_IndexInSeries))
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202 {
4263
61a2bedbae80 sanitize IndexInSeries (we've seen spaces there !)
Alain Mazy <alain@mazy.be>
parents: 4205
diff changeset
203 indexInSeries_ = boost::lexical_cast<size_t>(Toolbox::StripSpaces(s));
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 hasIndexInSeries_ = true;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207 catch (boost::bad_lexical_cast&)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
208 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 }
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
211
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
212 const std::string& GetIdentifier() const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
213 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
214 return instanceId_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
215 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
216
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
217 bool HasPosition() const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
218 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
219 return hasPosition_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
220 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
221
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
222 float ComputeRelativePosition(const Vector& normal) const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
223 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
224 assert(HasPosition());
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
225 return (normal[0] * position_[0] +
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
226 normal[1] * position_[1] +
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
227 normal[2] * position_[2]);
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
228 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
229
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
230 bool HasIndexInSeries() const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
231 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
232 return hasIndexInSeries_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
233 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
234
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
235 size_t GetIndexInSeries() const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
236 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
237 assert(HasIndexInSeries());
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
238 return indexInSeries_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
239 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
240
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
241 unsigned int GetFramesCount() const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
242 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
243 return framesCount_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
244 }
2804
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
245
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
246 bool HasNormal() const
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
247 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
248 return hasNormal_;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
249 }
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
250
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
251 const Vector& GetNormal() const
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
252 {
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
253 assert(hasNormal_);
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
254 return normal_;
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
255 }
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
256 };
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
257
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
258
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
259 class SliceOrdering::PositionComparator
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
260 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
261 private:
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
262 const Vector& normal_;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
263
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
264 public:
4205
d962a2996637 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4142
diff changeset
265 explicit PositionComparator(const Vector& normal) : normal_(normal)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
266 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
267 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
268
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
269 int operator() (const Instance* a,
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
270 const Instance* b) const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
271 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
272 return a->ComputeRelativePosition(normal_) < b->ComputeRelativePosition(normal_);
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
273 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
274 };
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
275
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
276
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
277 bool SliceOrdering::IndexInSeriesComparator(const SliceOrdering::Instance* a,
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
278 const SliceOrdering::Instance* b)
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
279 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
280 return a->GetIndexInSeries() < b->GetIndexInSeries();
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
281 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
282
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
283
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
284 void SliceOrdering::ComputeNormal()
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
285 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
286 DicomMap series;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
287 if (!index_.GetMainDicomTags(series, seriesId_, ResourceType_Series, ResourceType_Series))
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
288 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
289 throw OrthancException(ErrorCode_UnknownResource);
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
290 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
291
2804
d88970f1ffbf fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
292 hasNormal_ = ComputeNormal(normal_, series);
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
293 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
294
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
295
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
296 void SliceOrdering::CreateInstances()
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
297 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
298 std::list<std::string> instancesId;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
299 index_.GetChildren(instancesId, seriesId_);
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
301 instances_.reserve(instancesId.size());
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
302 for (std::list<std::string>::const_iterator
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
303 it = instancesId.begin(); it != instancesId.end(); ++it)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
304 {
3538
23219b9da4d1 fix ordered-slices route to be closer to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3512
diff changeset
305 instances_.push_back(new Instance(index_, *it));
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
306 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
307 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
308
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
309
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
310 bool SliceOrdering::SortUsingPositions()
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 {
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
312 if (instances_.size() <= 1)
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
313 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
314 // One single instance: It is sorted by default
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
315 return true;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
316 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
317
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
318 if (!hasNormal_)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
319 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
320 return false;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
321 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
322
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
323 for (size_t i = 0; i < instances_.size(); i++)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
324 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
325 assert(instances_[i] != NULL);
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
326
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
327 if (!instances_[i]->HasPosition() ||
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
328 (instances_[i]->HasNormal() &&
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
329 !IsParallelOrOpposite(instances_[i]->GetNormal(), normal_)))
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
331 return false;
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
335 PositionComparator comparator(normal_);
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
336 std::sort(instances_.begin(), instances_.end(), comparator);
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
337
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
338 float a = instances_[0]->ComputeRelativePosition(normal_);
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
339 for (size_t i = 1; i < instances_.size(); i++)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
340 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
341 float b = instances_[i]->ComputeRelativePosition(normal_);
1842
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
342
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
343 if (std::fabs(b - a) <= 10.0f * std::numeric_limits<float>::epsilon())
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
344 {
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
345 // Not enough space between two slices along the normal of the volume
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
346 return false;
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
347 }
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
348
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
349 a = b;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
350 }
1842
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
351
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
352 // This is a 3D volume
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
353 isVolume_ = true;
697ae8d0e287 better handling of ordered-slices
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
354 return true;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
355 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
356
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
357
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
358 bool SliceOrdering::SortUsingIndexInSeries()
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
359 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
360 if (instances_.size() <= 1)
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
361 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
362 // One single instance: It is sorted by default
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
363 return true;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
364 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
365
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
366 for (size_t i = 0; i < instances_.size(); i++)
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
367 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
368 assert(instances_[i] != NULL);
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
369 if (!instances_[i]->HasIndexInSeries())
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
370 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
371 return false;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
372 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
373 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
374
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
375 std::sort(instances_.begin(), instances_.end(), IndexInSeriesComparator);
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
376
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
377 for (size_t i = 1; i < instances_.size(); i++)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
378 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
379 if (instances_[i - 1]->GetIndexInSeries() == instances_[i]->GetIndexInSeries())
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
380 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
381 // The current "IndexInSeries" occurs 2 times: Not a proper ordering
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
382 LOG(WARNING) << "This series contains 2 slices with the same index, trying to display it anyway";
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
383 break;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
384 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
385 }
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
386
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
387 return true;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
388 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
389
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
390
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
391 SliceOrdering::SliceOrdering(ServerIndex& index,
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
392 const std::string& seriesId) :
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 index_(index),
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
394 seriesId_(seriesId),
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
395 isVolume_(false)
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
396 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
397 ComputeNormal();
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
398 CreateInstances();
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
399
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
400 if (!SortUsingPositions() &&
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
401 !SortUsingIndexInSeries())
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
402 {
2955
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2804
diff changeset
403 throw OrthancException(ErrorCode_CannotOrderSlices,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2804
diff changeset
404 "Unable to order the slices of series " + seriesId);
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
405 }
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
406 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 SliceOrdering::~SliceOrdering()
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
410 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
411 for (std::vector<Instance*>::iterator
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
412 it = instances_.begin(); it != instances_.end(); ++it)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
413 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
414 if (*it != NULL)
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
415 {
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
416 delete *it;
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
417 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
418 }
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
419 }
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
420
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
421
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
422 const std::string& SliceOrdering::GetInstanceId(size_t index) const
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
423 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
424 if (index >= instances_.size())
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
425 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
426 throw OrthancException(ErrorCode_ParameterOutOfRange);
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
427 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
428 else
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
429 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
430 return instances_[index]->GetIdentifier();
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
431 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
432 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
433
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
434
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
435 unsigned int SliceOrdering::GetFramesCount(size_t index) const
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
436 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
437 if (index >= instances_.size())
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
438 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
439 throw OrthancException(ErrorCode_ParameterOutOfRange);
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
440 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
441 else
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
442 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
443 return instances_[index]->GetFramesCount();
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
444 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
445 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
446
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
447
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
448 void SliceOrdering::Format(Json::Value& result) const
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
449 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
450 result = Json::objectValue;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
451 result["Type"] = (isVolume_ ? "Volume" : "Sequence");
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
452
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
453 Json::Value tmp = Json::arrayValue;
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
454 for (size_t i = 0; i < GetInstancesCount(); i++)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
455 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
456 tmp.append(GetBasePath(ResourceType_Instance, GetInstanceId(i)) + "/file");
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
457 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
458
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
459 result["Dicom"] = tmp;
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
460
1873
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
461 Json::Value slicesShort = Json::arrayValue;
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
462
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
463 tmp.clear();
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
464 for (size_t i = 0; i < GetInstancesCount(); i++)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
465 {
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
466 std::string base = GetBasePath(ResourceType_Instance, GetInstanceId(i));
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
467 for (size_t j = 0; j < GetFramesCount(i); j++)
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
468 {
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
469 tmp.append(base + "/frames/" + boost::lexical_cast<std::string>(j));
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
470 }
1873
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
471
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
472 Json::Value tmp2 = Json::arrayValue;
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
473 tmp2.append(GetInstanceId(i));
1873
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
474 tmp2.append(0);
3899
104e27133ebd '/ordered-slices': reverted the change introduced in 1.5.8 and go-back to 1.5.7 behaviour
Alain Mazy <alain@mazy.be>
parents: 3640
diff changeset
475 tmp2.append(GetFramesCount(i));
1873
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
476
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
477 slicesShort.append(tmp2);
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
478 }
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
479
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
480 result["Slices"] = tmp;
1873
5e7feeb63d1f SlicesShort
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1868
diff changeset
481 result["SlicesShort"] = slicesShort;
1703
b80e76dd1d56 ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1702
diff changeset
482 }
1702
9980875edc7c started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 }