annotate Core/DicomFormat/DicomImageInformation.cpp @ 2350:49152eef696f

travis: fix
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 18 Jul 2017 07:26:04 +0200
parents 16e45af17a4d
children feb0d2dcfa9b
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1737
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1206
diff changeset
4 * Department, University Hospital of Liege, Belgium
2244
a3a65de1840f shared copyright with osimis
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1924
diff changeset
5 * Copyright (C) 2017 Osimis, Belgium
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU General Public License as
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * published by the Free Software Foundation, either version 3 of the
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * License, or (at your option) any later version.
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * In addition, as a special exception, the copyright holders of this
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * program give permission to link the code of its release with the
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * that use the same license as the "OpenSSL" library), and distribute
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * the linked executables. You must obey the GNU General Public License
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * in all respects for all of the code used other than "OpenSSL". If you
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * modify file(s) with this exception, you may extend this exception to
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * your version of the file(s), but you are not obligated to do so. If
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * you do not wish to do so, delete this exception statement from your
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * version. If you delete this exception statement from all source files
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 * in the program, then also delete it here.
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 *
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * This program is distributed in the hope that it will be useful, but
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * WITHOUT ANY WARRANTY; without even the implied warranty of
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 * General Public License for more details.
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 *
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * You should have received a copy of the GNU General Public License
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 **/
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 #include "../PrecompiledHeaders.h"
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
36 #ifndef NOMINMAX
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
37 #define NOMINMAX
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
38 #endif
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
39
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
40 #include "DicomImageInformation.h"
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
41
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
42 #include "../OrthancException.h"
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
43 #include "../Toolbox.h"
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
44 #include <boost/lexical_cast.hpp>
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
45 #include <limits>
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
46 #include <cassert>
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
47 #include <stdio.h>
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
48
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
49 namespace Orthanc
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
50 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
51 DicomImageInformation::DicomImageInformation(const DicomMap& values)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
52 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
53 unsigned int pixelRepresentation;
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
54 unsigned int planarConfiguration = 0;
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
55
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
56 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
57 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
58 std::string p = values.GetValue(DICOM_TAG_PHOTOMETRIC_INTERPRETATION).GetContent();
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
59 Toolbox::ToUpperCase(p);
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
60
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
61 if (p == "RGB")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
62 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
63 photometric_ = PhotometricInterpretation_RGB;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
64 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
65 else if (p == "MONOCHROME1")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
66 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
67 photometric_ = PhotometricInterpretation_Monochrome1;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
68 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
69 else if (p == "MONOCHROME2")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
70 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
71 photometric_ = PhotometricInterpretation_Monochrome2;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
72 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
73 else if (p == "PALETTE COLOR")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
74 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
75 photometric_ = PhotometricInterpretation_Palette;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
76 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
77 else if (p == "HSV")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
78 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
79 photometric_ = PhotometricInterpretation_HSV;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
80 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
81 else if (p == "ARGB")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
82 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
83 photometric_ = PhotometricInterpretation_ARGB;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
84 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
85 else if (p == "CMYK")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
86 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
87 photometric_ = PhotometricInterpretation_CMYK;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
88 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
89 else if (p == "YBR_FULL")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
90 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
91 photometric_ = PhotometricInterpretation_YBRFull;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
92 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
93 else if (p == "YBR_FULL_422")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
94 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
95 photometric_ = PhotometricInterpretation_YBRFull422;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
96 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
97 else if (p == "YBR_PARTIAL_420")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
98 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
99 photometric_ = PhotometricInterpretation_YBRPartial420;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
100 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
101 else if (p == "YBR_PARTIAL_422")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
102 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
103 photometric_ = PhotometricInterpretation_YBRPartial422;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
104 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
105 else if (p == "YBR_ICT")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
106 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
107 photometric_ = PhotometricInterpretation_YBR_ICT;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
108 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
109 else if (p == "YBR_RCT")
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
110 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
111 photometric_ = PhotometricInterpretation_YBR_RCT;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
112 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
113 else
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
114 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
115 photometric_ = PhotometricInterpretation_Unknown;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
116 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
117
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
118 width_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_COLUMNS).GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
119 height_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_ROWS).GetContent());
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
120 bitsAllocated_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_BITS_ALLOCATED).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
121
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
123 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
124 samplesPerPixel_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_SAMPLES_PER_PIXEL).GetContent());
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
125 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
126 catch (OrthancException&)
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
127 {
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
128 samplesPerPixel_ = 1; // Assume 1 color channel
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
129 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
130
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
131 try
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
132 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
133 bitsStored_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_BITS_STORED).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
134 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
135 catch (OrthancException&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
136 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
137 bitsStored_ = bitsAllocated_;
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
138 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
139
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
140 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
141 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
142 highBit_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_HIGH_BIT).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
143 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
144 catch (OrthancException&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
145 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
146 highBit_ = bitsStored_ - 1;
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
147 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
148
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
150 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
151 pixelRepresentation = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_PIXEL_REPRESENTATION).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
152 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
153 catch (OrthancException&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
154 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
155 pixelRepresentation = 0; // Assume unsigned pixels
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
156 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
157
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
158 if (samplesPerPixel_ > 1)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
159 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
160 // The "Planar Configuration" is only set when "Samples per Pixels" is greater than 1
1908
5096681efce6 direct hyperlinks to the DICOM standard
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1905
diff changeset
161 // http://dicom.nema.org/medical/dicom/current/output/html/part03.html#sect_C.7.6.3.1.3
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
162 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
163 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
164 planarConfiguration = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_PLANAR_CONFIGURATION).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
165 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
166 catch (OrthancException&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
167 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
168 planarConfiguration = 0; // Assume interleaved color channels
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
169 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
170 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
171 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172 catch (boost::bad_lexical_cast&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
173 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 throw OrthancException(ErrorCode_NotImplemented);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176 catch (OrthancException&)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178 throw OrthancException(ErrorCode_NotImplemented);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
181 try
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 {
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
183 numberOfFrames_ = boost::lexical_cast<unsigned int>(values.GetValue(DICOM_TAG_NUMBER_OF_FRAMES).GetContent());
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
184 }
1737
ec66a16aa398 removal of DicomStringValue and DicomNullValue
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
185 catch (OrthancException&)
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
186 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
187 // If the tag "NumberOfFrames" is absent, assume there is a single frame
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
188 numberOfFrames_ = 1;
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
189 }
857
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 855
diff changeset
190 catch (boost::bad_lexical_cast&)
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
191 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
192 throw OrthancException(ErrorCode_NotImplemented);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
193 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
194
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
195 if ((bitsAllocated_ != 8 && bitsAllocated_ != 16 &&
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
196 bitsAllocated_ != 24 && bitsAllocated_ != 32) ||
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
197 numberOfFrames_ == 0 ||
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
198 (planarConfiguration != 0 && planarConfiguration != 1))
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
199 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
200 throw OrthancException(ErrorCode_NotImplemented);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
201 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
202
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
203 if (samplesPerPixel_ == 0)
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
204 {
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
205 throw OrthancException(ErrorCode_NotImplemented);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
206 }
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
207
860
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 857
diff changeset
208 bytesPerValue_ = bitsAllocated_ / 8;
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
209
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
210 isPlanar_ = (planarConfiguration != 0 ? true : false);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
211 isSigned_ = (pixelRepresentation != 0 ? true : false);
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
212 }
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
213
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
214
1905
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
215 bool DicomImageInformation::ExtractPixelFormat(PixelFormat& format,
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
216 bool ignorePhotometricInterpretation) const
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
217 {
1905
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
218 if (photometric_ == PhotometricInterpretation_Palette)
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
219 {
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
220 return false;
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
221 }
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
222
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
223 if (ignorePhotometricInterpretation ||
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
224 photometric_ == PhotometricInterpretation_Monochrome1 ||
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
225 photometric_ == PhotometricInterpretation_Monochrome2)
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
226 {
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
227 if (GetBitsStored() == 8 && GetChannelCount() == 1 && !IsSigned())
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
228 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
229 format = PixelFormat_Grayscale8;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
230 return true;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
231 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
232
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
233 if (GetBitsAllocated() == 16 && GetChannelCount() == 1 && !IsSigned())
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
234 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
235 format = PixelFormat_Grayscale16;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
236 return true;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
237 }
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
238
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
239 if (GetBitsAllocated() == 16 && GetChannelCount() == 1 && IsSigned())
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
240 {
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
241 format = PixelFormat_SignedGrayscale16;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
242 return true;
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
243 }
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
244 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
245
1206
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
246 if (GetBitsStored() == 8 &&
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
247 GetChannelCount() == 3 &&
f5b0207967bc Fix issue 19 (YBR_FULL are decoded incorrectly)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 863
diff changeset
248 !IsSigned() &&
1905
8b1baa2315b8 Huge speedup if decoding the family of JPEG transfer syntaxes
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1900
diff changeset
249 (ignorePhotometricInterpretation || photometric_ == PhotometricInterpretation_RGB))
854
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
250 {
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
251 format = PixelFormat_RGB24;
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
252 return true;
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
253 }
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
254
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
255 return false;
ff530685e46a fast version of image copy
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 853
diff changeset
256 }
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
257
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
258
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
259 size_t DicomImageInformation::GetFrameSize() const
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
260 {
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
261 return (GetHeight() *
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
262 GetWidth() *
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
263 GetBytesPerValue() *
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
264 GetChannelCount());
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1908
diff changeset
265 }
853
839be3022203 DicomImageInformation
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
266 }