Mercurial > hg > orthanc
annotate OrthancServer/Sources/OrthancRestApi/OrthancRestResources.cpp @ 4422:48303e493135
cont openapi
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Tue, 29 Dec 2020 16:05:07 +0100 |
| parents | a7d72378e1cb |
| children | 83371ccdfe80 |
| rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2020 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
| 4045 | 37 #include "../../../OrthancFramework/Sources/Compression/GzipCompressor.h" |
| 38 #include "../../../OrthancFramework/Sources/DicomFormat/DicomImageInformation.h" | |
| 39 #include "../../../OrthancFramework/Sources/DicomParsing/DicomWebJsonVisitor.h" | |
| 40 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 41 #include "../../../OrthancFramework/Sources/DicomParsing/Internals/DicomImageDecoder.h" | |
| 42 #include "../../../OrthancFramework/Sources/HttpServer/HttpContentNegociation.h" | |
| 43 #include "../../../OrthancFramework/Sources/Images/Image.h" | |
| 44 #include "../../../OrthancFramework/Sources/Images/ImageProcessing.h" | |
| 45 #include "../../../OrthancFramework/Sources/Logging.h" | |
| 46 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" | |
| 47 | |
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48 #include "../OrthancConfiguration.h" |
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49 #include "../Search/DatabaseLookup.h" |
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50 #include "../ServerContext.h" |
| 2131 | 51 #include "../ServerToolbox.h" |
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52 #include "../SliceOrdering.h" |
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53 |
| 3085 | 54 #include "../../Plugins/Engine/OrthancPlugins.h" |
| 55 | |
| 3687 | 56 // This "include" is mandatory for Release builds using Linux Standard Base |
| 57 #include <boost/math/special_functions/round.hpp> | |
| 58 | |
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59 |
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60 /** |
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61 * This semaphore is used to limit the number of concurrent HTTP |
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62 * requests on CPU-intensive routes of the REST API, in order to |
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63 * prevent exhaustion of resources (new in Orthanc 1.7.0). |
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64 **/ |
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65 static Orthanc::Semaphore throttlingSemaphore_(4); // TODO => PARAMETER? |
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66 |
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67 |
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68 namespace Orthanc |
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69 { |
| 4415 | 70 static std::string GetDocumentationSampleResource(ResourceType type) |
| 71 { | |
| 72 switch (type) | |
| 73 { | |
| 74 case Orthanc::ResourceType_Instance: | |
| 75 return "https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2"; | |
| 76 break; | |
| 77 | |
| 78 case Orthanc::ResourceType_Series: | |
| 79 return "https://demo.orthanc-server.com/series/37836232-d13a2350-fa1dedc5-962b31aa-010f8e52"; | |
| 80 break; | |
| 81 | |
| 82 case Orthanc::ResourceType_Study: | |
| 83 return "https://demo.orthanc-server.com/studies/27f7126f-4f66fb14-03f4081b-f9341db2-53925988"; | |
| 84 break; | |
| 85 | |
| 86 case Orthanc::ResourceType_Patient: | |
| 87 return "https://demo.orthanc-server.com/patients/46e6332c-677825b6-202fcf7c-f787bc5f-7b07c382"; | |
| 88 break; | |
| 89 | |
| 90 default: | |
| 91 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 92 } | |
| 93 } | |
| 94 | |
| 95 | |
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96 static void AnswerDicomAsJson(RestApiCall& call, |
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97 const Json::Value& dicom, |
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98 DicomToJsonFormat mode) |
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99 { |
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100 if (mode != DicomToJsonFormat_Full) |
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101 { |
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102 Json::Value simplified; |
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103 Toolbox::SimplifyDicomAsJson(simplified, dicom, mode); |
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104 call.GetOutput().AnswerJson(simplified); |
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105 } |
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106 else |
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107 { |
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108 call.GetOutput().AnswerJson(dicom); |
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109 } |
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110 } |
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111 |
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112 |
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113 static DicomToJsonFormat GetDicomFormat(const RestApiGetCall& call) |
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114 { |
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115 if (call.HasArgument("simplify")) |
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116 { |
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117 return DicomToJsonFormat_Human; |
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118 } |
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119 else if (call.HasArgument("short")) |
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120 { |
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121 return DicomToJsonFormat_Short; |
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122 } |
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123 else |
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124 { |
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125 return DicomToJsonFormat_Full; |
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126 } |
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127 } |
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128 |
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129 |
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130 static void AnswerDicomAsJson(RestApiGetCall& call, |
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131 const Json::Value& dicom) |
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132 { |
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133 AnswerDicomAsJson(call, dicom, GetDicomFormat(call)); |
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134 } |
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135 |
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136 |
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137 static void ParseSetOfTags(std::set<DicomTag>& target, |
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138 const RestApiGetCall& call, |
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139 const std::string& argument) |
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140 { |
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141 target.clear(); |
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142 |
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143 if (call.HasArgument(argument)) |
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144 { |
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145 std::vector<std::string> tags; |
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146 Toolbox::TokenizeString(tags, call.GetArgument(argument, ""), ','); |
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147 |
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148 for (size_t i = 0; i < tags.size(); i++) |
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149 { |
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150 target.insert(FromDcmtkBridge::ParseTag(tags[i])); |
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151 } |
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152 } |
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153 } |
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154 |
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155 |
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156 // List all the patients, studies, series or instances ---------------------- |
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157 |
| 1354 | 158 static void AnswerListOfResources(RestApiOutput& output, |
| 159 ServerIndex& index, | |
| 160 const std::list<std::string>& resources, | |
| 161 ResourceType level, | |
| 162 bool expand) | |
| 163 { | |
| 164 Json::Value answer = Json::arrayValue; | |
| 165 | |
| 166 for (std::list<std::string>::const_iterator | |
| 1384 | 167 resource = resources.begin(); resource != resources.end(); ++resource) |
| 1354 | 168 { |
| 169 if (expand) | |
| 170 { | |
| 171 Json::Value item; | |
| 172 if (index.LookupResource(item, *resource, level)) | |
| 173 { | |
| 174 answer.append(item); | |
| 175 } | |
| 176 } | |
| 177 else | |
| 178 { | |
| 179 answer.append(*resource); | |
| 180 } | |
| 181 } | |
| 182 | |
| 183 output.AnswerJson(answer); | |
| 184 } | |
| 185 | |
| 186 | |
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187 template <enum ResourceType resourceType> |
| 974 | 188 static void ListResources(RestApiGetCall& call) |
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189 { |
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190 if (call.IsDocumentation()) |
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191 { |
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192 const std::string resources = GetResourceTypeText(resourceType, true /* plural */, false /* lower case */); |
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193 call.GetDocumentation() |
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194 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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195 .SetSummary("List the available " + resources) |
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196 .SetDescription("List the Orthanc identifiers of all the available DICOM " + resources) |
| 4403 | 197 .SetHttpGetArgument("limit", RestApiCallDocumentation::Type_Number, "Limit the number of results", false) |
| 198 .SetHttpGetArgument("since", RestApiCallDocumentation::Type_Number, "Show only the resources since the provided index", false) | |
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199 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, |
| 4403 | 200 "If present, retrieve detailed information about the individual " + resources, false) |
| 4404 | 201 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " |
| 202 "about the reported " + resources + " (if `expand` argument is provided)") | |
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203 .SetHttpGetSample("https://demo.orthanc-server.com/" + resources + "?since=0&limit=2", true); |
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204 return; |
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205 } |
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206 |
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207 ServerIndex& index = OrthancRestApi::GetIndex(call); |
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208 |
| 1354 | 209 std::list<std::string> result; |
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210 |
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211 if (call.HasArgument("limit") || |
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212 call.HasArgument("since")) |
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213 { |
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214 if (!call.HasArgument("limit")) |
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215 { |
| 2955 | 216 throw OrthancException(ErrorCode_BadRequest, |
| 217 "Missing \"limit\" argument for GET request against: " + | |
| 218 call.FlattenUri()); | |
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219 } |
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220 |
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221 if (!call.HasArgument("since")) |
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222 { |
| 2955 | 223 throw OrthancException(ErrorCode_BadRequest, |
| 224 "Missing \"since\" argument for GET request against: " + | |
| 225 call.FlattenUri()); | |
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226 } |
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227 |
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228 size_t since = boost::lexical_cast<size_t>(call.GetArgument("since", "")); |
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229 size_t limit = boost::lexical_cast<size_t>(call.GetArgument("limit", "")); |
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230 index.GetAllUuids(result, resourceType, since, limit); |
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231 } |
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232 else |
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233 { |
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234 index.GetAllUuids(result, resourceType); |
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235 } |
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236 |
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237 |
| 1354 | 238 AnswerListOfResources(call.GetOutput(), index, result, resourceType, call.HasArgument("expand")); |
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239 } |
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240 |
| 4409 | 241 |
| 242 | |
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243 template <enum ResourceType resourceType> |
| 974 | 244 static void GetSingleResource(RestApiGetCall& call) |
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245 { |
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246 if (call.IsDocumentation()) |
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247 { |
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248 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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249 call.GetDocumentation() |
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250 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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251 .SetSummary("Get information about some " + resource) |
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252 .SetDescription("Get detailed information about the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 253 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 4409 | 254 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) |
| 255 .SetHttpGetSample(GetDocumentationSampleResource(resourceType), true); | |
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256 return; |
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257 } |
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258 |
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259 Json::Value result; |
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260 if (OrthancRestApi::GetIndex(call).LookupResource(result, call.GetUriComponent("id", ""), resourceType)) |
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261 { |
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262 call.GetOutput().AnswerJson(result); |
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263 } |
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264 } |
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265 |
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266 template <enum ResourceType resourceType> |
| 974 | 267 static void DeleteSingleResource(RestApiDeleteCall& call) |
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268 { |
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269 if (call.IsDocumentation()) |
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270 { |
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271 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); |
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272 call.GetDocumentation() |
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273 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) |
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274 .SetSummary("Delete some " + resource) |
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275 .SetDescription("Delete the DICOM " + resource + " whose Orthanc identifier is provided in the URL") |
| 4404 | 276 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); |
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277 return; |
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278 } |
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279 |
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280 Json::Value result; |
|
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281 if (OrthancRestApi::GetContext(call).DeleteResource(result, call.GetUriComponent("id", ""), resourceType)) |
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282 { |
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283 call.GetOutput().AnswerJson(result); |
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284 } |
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285 } |
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286 |
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287 |
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288 // Get information about a single patient ----------------------------------- |
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289 |
| 974 | 290 static void IsProtectedPatient(RestApiGetCall& call) |
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291 { |
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292 if (call.IsDocumentation()) |
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293 { |
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294 call.GetDocumentation() |
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295 .SetTag("Patients") |
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296 .SetSummary("Is the patient protected against recycling?") |
| 4404 | 297 .SetUriArgument("id", "Orthanc identifier of the patient of interest") |
| 4403 | 298 .AddAnswerType(MimeType_PlainText, "`1` if protected, `0` if not protected"); |
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299 return; |
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300 } |
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301 |
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302 std::string publicId = call.GetUriComponent("id", ""); |
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303 bool isProtected = OrthancRestApi::GetIndex(call).IsProtectedPatient(publicId); |
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304 call.GetOutput().AnswerBuffer(isProtected ? "1" : "0", MimeType_PlainText); |
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305 } |
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306 |
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307 |
| 974 | 308 static void SetPatientProtection(RestApiPutCall& call) |
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309 { |
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310 if (call.IsDocumentation()) |
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311 { |
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312 call.GetDocumentation() |
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313 .SetTag("Patients") |
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314 .SetSummary("Protect one patient against recycling") |
| 4403 | 315 .SetDescription("Check out configuration options `MaximumStorageSize` and `MaximumPatientCount`") |
| 4404 | 316 .SetUriArgument("id", "Orthanc identifier of the patient of interest"); |
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317 return; |
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318 } |
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319 |
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320 ServerContext& context = OrthancRestApi::GetContext(call); |
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321 |
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322 std::string publicId = call.GetUriComponent("id", ""); |
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323 |
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324 std::string body; |
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325 call.BodyToString(body); |
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326 body = Toolbox::StripSpaces(body); |
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327 |
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328 if (body == "0") |
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329 { |
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330 context.GetIndex().SetProtectedPatient(publicId, false); |
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331 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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332 } |
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333 else if (body == "1") |
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334 { |
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335 context.GetIndex().SetProtectedPatient(publicId, true); |
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336 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
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337 } |
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338 else |
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339 { |
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340 // Bad request |
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341 } |
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342 } |
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343 |
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344 |
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345 // Get information about a single instance ---------------------------------- |
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346 |
| 974 | 347 static void GetInstanceFile(RestApiGetCall& call) |
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348 { |
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349 if (call.IsDocumentation()) |
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350 { |
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351 call.GetDocumentation() |
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352 .SetTag("Instances") |
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353 .SetSummary("Download DICOM") |
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354 .SetDescription("Download one DICOM instance") |
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355 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
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356 .SetHttpHeader("Accept", "This HTTP header can be set to retrieve the DICOM instance in DICOMweb format") |
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357 .AddAnswerType(MimeType_Dicom, "The DICOM instance") |
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358 .AddAnswerType(MimeType_DicomWebJson, "The DICOM instance, in DICOMweb JSON format") |
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359 .AddAnswerType(MimeType_DicomWebXml, "The DICOM instance, in DICOMweb XML format"); |
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360 return; |
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361 } |
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362 |
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363 ServerContext& context = OrthancRestApi::GetContext(call); |
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364 |
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365 std::string publicId = call.GetUriComponent("id", ""); |
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366 |
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367 HttpToolbox::Arguments::const_iterator accept = call.GetHttpHeaders().find("accept"); |
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368 if (accept != call.GetHttpHeaders().end()) |
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369 { |
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370 // New in Orthanc 1.5.4 |
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371 try |
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372 { |
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373 MimeType mime = StringToMimeType(accept->second.c_str()); |
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374 |
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375 if (mime == MimeType_DicomWebJson || |
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376 mime == MimeType_DicomWebXml) |
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377 { |
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378 DicomWebJsonVisitor visitor; |
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379 |
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380 { |
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381 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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382 locker.GetDicom().Apply(visitor); |
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383 } |
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384 |
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385 if (mime == MimeType_DicomWebJson) |
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386 { |
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387 std::string s = visitor.GetResult().toStyledString(); |
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388 call.GetOutput().AnswerBuffer(s, MimeType_DicomWebJson); |
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389 } |
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390 else |
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391 { |
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392 std::string xml; |
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393 visitor.FormatXml(xml); |
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394 call.GetOutput().AnswerBuffer(xml, MimeType_DicomWebXml); |
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395 } |
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396 |
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397 return; |
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398 } |
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399 } |
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400 catch (OrthancException&) |
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401 { |
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402 } |
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403 } |
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404 |
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405 context.AnswerAttachment(call.GetOutput(), publicId, FileContentType_Dicom); |
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406 } |
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407 |
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408 |
| 974 | 409 static void ExportInstanceFile(RestApiPostCall& call) |
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410 { |
| 4421 | 411 if (call.IsDocumentation()) |
| 412 { | |
| 413 call.GetDocumentation() | |
| 414 .SetTag("Instances") | |
| 415 .SetSummary("Write DICOM onto filesystem") | |
| 416 .SetDescription("Write the DICOM file onto the filesystem where Orthanc is running") | |
| 417 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 418 .AddRequestType(MimeType_PlainText, "Target path on the filesystem"); | |
| 419 return; | |
| 420 } | |
| 421 | |
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422 ServerContext& context = OrthancRestApi::GetContext(call); |
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423 |
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424 std::string publicId = call.GetUriComponent("id", ""); |
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425 |
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426 std::string dicom; |
| 2124 | 427 context.ReadDicom(dicom, publicId); |
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428 |
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429 std::string target; |
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430 call.BodyToString(target); |
| 2140 | 431 SystemToolbox::WriteFile(dicom, target); |
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432 |
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433 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
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434 } |
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435 |
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436 |
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437 template <DicomToJsonFormat format> |
| 974 | 438 static void GetInstanceTags(RestApiGetCall& call) |
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439 { |
| 4404 | 440 if (call.IsDocumentation()) |
| 441 { | |
| 442 if (format == DicomToJsonFormat_Human) | |
| 443 { | |
| 444 call.GetDocumentation() | |
| 445 .SetTag("Instances") | |
| 446 .SetSummary("Get human-readable tags") | |
| 447 .SetDescription("Get the DICOM tags in human-readable format") | |
| 448 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
|
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449 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, |
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450 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
| 4404 | 451 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") |
| 4415 | 452 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/simplified-tags", 10); |
| 4404 | 453 return; |
| 454 } | |
| 455 else | |
| 456 { | |
| 457 throw OrthancException(ErrorCode_NotImplemented); | |
| 458 } | |
| 459 } | |
| 460 | |
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461 ServerContext& context = OrthancRestApi::GetContext(call); |
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462 |
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463 std::string publicId = call.GetUriComponent("id", ""); |
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464 |
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465 std::set<DicomTag> ignoreTagLength; |
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466 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
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467 |
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468 if (format != DicomToJsonFormat_Full || |
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469 !ignoreTagLength.empty()) |
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470 { |
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471 Json::Value full; |
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472 context.ReadDicomAsJson(full, publicId, ignoreTagLength); |
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473 AnswerDicomAsJson(call, full, format); |
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474 } |
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475 else |
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476 { |
|
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477 // This path allows one to avoid the JSON decoding if no |
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478 // simplification is asked, and if no "ignore-length" argument |
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479 // is present |
| 2127 | 480 std::string full; |
| 481 context.ReadDicomAsJson(full, publicId); | |
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482 call.GetOutput().AnswerBuffer(full, MimeType_Json); |
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483 } |
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484 } |
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485 |
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486 |
| 974 | 487 static void GetInstanceTagsBis(RestApiGetCall& call) |
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488 { |
| 4404 | 489 if (call.IsDocumentation()) |
| 490 { | |
| 491 call.GetDocumentation() | |
| 492 .SetTag("Instances") | |
| 493 .SetSummary("Get DICOM tags") | |
| 494 .SetDescription("Get the DICOM tags in the specified format. By default, the `full` format is used, which " | |
| 495 "combines hexadecimal tags with human-readable description.") | |
| 496 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 497 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
| 498 "If present, report the DICOM tags in human-readable format " | |
| 499 "(same as the `/instances/{id}/simplified-tags` route)", false) | |
| 500 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
| 501 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
| 502 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 4415 | 503 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/tags", 10); |
| 4404 | 504 return; |
| 505 } | |
| 506 | |
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507 switch (GetDicomFormat(call)) |
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508 { |
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509 case DicomToJsonFormat_Human: |
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510 GetInstanceTags<DicomToJsonFormat_Human>(call); |
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511 break; |
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512 |
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513 case DicomToJsonFormat_Short: |
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514 GetInstanceTags<DicomToJsonFormat_Short>(call); |
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515 break; |
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516 |
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517 case DicomToJsonFormat_Full: |
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518 GetInstanceTags<DicomToJsonFormat_Full>(call); |
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519 break; |
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520 |
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521 default: |
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522 throw OrthancException(ErrorCode_InternalError); |
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523 } |
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524 } |
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525 |
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526 |
| 974 | 527 static void ListFrames(RestApiGetCall& call) |
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528 { |
| 4414 | 529 if (call.IsDocumentation()) |
| 530 { | |
| 531 call.GetDocumentation() | |
| 532 .SetTag("Instances") | |
| 533 .SetSummary("List available frames") | |
| 534 .SetDescription("List the frames that are available in the DICOM instance of interest") | |
| 535 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 536 .AddAnswerType(MimeType_Json, "The list of the indices of the available frames") | |
| 537 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/frames", true); | |
| 538 return; | |
| 539 } | |
| 540 | |
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541 std::string publicId = call.GetUriComponent("id", ""); |
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542 |
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543 unsigned int numberOfFrames; |
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544 |
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545 { |
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546 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
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547 numberOfFrames = locker.GetDicom().GetFramesCount(); |
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548 } |
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549 |
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550 Json::Value result = Json::arrayValue; |
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551 for (unsigned int i = 0; i < numberOfFrames; i++) |
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552 { |
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553 result.append(i); |
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554 } |
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555 |
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556 call.GetOutput().AnswerJson(result); |
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557 } |
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558 |
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559 |
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560 namespace |
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561 { |
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562 class ImageToEncode |
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563 { |
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564 private: |
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565 std::unique_ptr<ImageAccessor>& image_; |
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566 ImageExtractionMode mode_; |
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567 bool invert_; |
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568 MimeType format_; |
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569 std::string answer_; |
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570 |
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571 public: |
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572 ImageToEncode(std::unique_ptr<ImageAccessor>& image, |
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573 ImageExtractionMode mode, |
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574 bool invert) : |
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575 image_(image), |
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576 mode_(mode), |
| 4205 | 577 invert_(invert), |
| 578 format_(MimeType_Binary) | |
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579 { |
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580 } |
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581 |
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582 void Answer(RestApiOutput& output) |
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583 { |
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584 output.AnswerBuffer(answer_, format_); |
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585 } |
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586 |
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587 void EncodeUsingPng() |
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588 { |
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589 format_ = MimeType_Png; |
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590 DicomImageDecoder::ExtractPngImage(answer_, image_, mode_, invert_); |
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591 } |
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592 |
|
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593 void EncodeUsingPam() |
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594 { |
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595 format_ = MimeType_Pam; |
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596 DicomImageDecoder::ExtractPamImage(answer_, image_, mode_, invert_); |
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597 } |
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598 |
|
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599 void EncodeUsingJpeg(uint8_t quality) |
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600 { |
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601 format_ = MimeType_Jpeg; |
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602 DicomImageDecoder::ExtractJpegImage(answer_, image_, mode_, invert_, quality); |
|
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603 } |
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604 }; |
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605 |
|
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606 class EncodePng : public HttpContentNegociation::IHandler |
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607 { |
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608 private: |
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609 ImageToEncode& image_; |
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610 |
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611 public: |
| 4205 | 612 explicit EncodePng(ImageToEncode& image) : image_(image) |
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613 { |
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614 } |
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615 |
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616 virtual void Handle(const std::string& type, |
| 4205 | 617 const std::string& subtype) ORTHANC_OVERRIDE |
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618 { |
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619 assert(type == "image"); |
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620 assert(subtype == "png"); |
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621 image_.EncodeUsingPng(); |
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622 } |
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623 }; |
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624 |
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625 class EncodePam : public HttpContentNegociation::IHandler |
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626 { |
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627 private: |
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628 ImageToEncode& image_; |
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629 |
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630 public: |
| 4205 | 631 explicit EncodePam(ImageToEncode& image) : image_(image) |
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632 { |
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633 } |
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634 |
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|
635 virtual void Handle(const std::string& type, |
| 4205 | 636 const std::string& subtype) ORTHANC_OVERRIDE |
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637 { |
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638 assert(type == "image"); |
| 2780 | 639 assert(subtype == "x-portable-arbitrarymap"); |
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640 image_.EncodeUsingPam(); |
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641 } |
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642 }; |
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643 |
|
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644 class EncodeJpeg : public HttpContentNegociation::IHandler |
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645 { |
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646 private: |
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647 ImageToEncode& image_; |
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648 unsigned int quality_; |
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649 |
|
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650 public: |
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651 EncodeJpeg(ImageToEncode& image, |
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652 const RestApiGetCall& call) : |
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653 image_(image) |
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654 { |
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655 std::string v = call.GetArgument("quality", "90" /* default JPEG quality */); |
|
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656 bool ok = false; |
|
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657 |
|
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658 try |
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659 { |
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660 quality_ = boost::lexical_cast<unsigned int>(v); |
| 1847 | 661 ok = (quality_ >= 1 && quality_ <= 100); |
|
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662 } |
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663 catch (boost::bad_lexical_cast&) |
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664 { |
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665 } |
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666 |
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667 if (!ok) |
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668 { |
| 2955 | 669 throw OrthancException( |
| 670 ErrorCode_BadRequest, | |
| 671 "Bad quality for a JPEG encoding (must be a number between 0 and 100): " + v); | |
|
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672 } |
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673 } |
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674 |
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675 virtual void Handle(const std::string& type, |
| 4205 | 676 const std::string& subtype) ORTHANC_OVERRIDE |
|
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677 { |
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678 assert(type == "image"); |
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679 assert(subtype == "jpeg"); |
|
1902
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680 image_.EncodeUsingJpeg(quality_); |
|
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681 } |
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682 }; |
|
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683 } |
|
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684 |
|
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|
685 |
|
3683
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686 namespace |
|
3600
4066998150ef
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687 { |
|
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688 class IDecodedFrameHandler : public boost::noncopyable |
|
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689 { |
|
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690 public: |
|
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691 virtual ~IDecodedFrameHandler() |
|
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692 { |
|
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693 } |
|
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694 |
|
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695 virtual void Handle(RestApiGetCall& call, |
|
3712
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696 std::unique_ptr<ImageAccessor>& decoded, |
|
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697 const DicomMap& dicom) = 0; |
|
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698 |
|
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699 virtual bool RequiresDicomTags() const = 0; |
|
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700 |
|
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701 static void Apply(RestApiGetCall& call, |
|
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702 IDecodedFrameHandler& handler, |
|
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703 ImageExtractionMode mode /* for generation of documentation */, |
|
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704 bool isRendered /* for generation of documentation */) |
|
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705 { |
|
4406
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706 if (call.IsDocumentation()) |
|
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707 { |
|
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708 std::string m; |
|
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709 if (!isRendered) |
|
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710 { |
|
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711 switch (mode) |
|
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712 { |
|
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713 case ImageExtractionMode_Preview: |
|
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714 m = "preview"; |
|
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715 break; |
|
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716 case ImageExtractionMode_UInt8: |
|
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717 m = "uint8"; |
|
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718 break; |
|
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|
719 case ImageExtractionMode_UInt16: |
|
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720 m = "uint16"; |
|
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|
721 break; |
|
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722 case ImageExtractionMode_Int16: |
|
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|
723 m = "int16"; |
|
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724 break; |
|
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|
725 default: |
|
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|
726 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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|
727 } |
|
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|
728 } |
|
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|
729 |
|
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|
730 std::string description; |
|
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|
731 std::string verb = (isRendered ? "Render" : "Decode"); |
|
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|
732 |
|
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|
733 if (call.HasUriComponent("frame")) |
|
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|
734 { |
|
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|
735 description = verb + " one frame of interest from the given DICOM instance."; |
|
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|
736 call.GetDocumentation() |
|
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737 .SetSummary(verb + " a frame" + (m.empty() ? "" : " (" + m + ")")) |
|
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738 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); |
|
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|
739 } |
|
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|
740 else |
|
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|
741 { |
|
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|
742 description = verb + " the first frame of the given DICOM instance."; |
|
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changeset
|
743 call.GetDocumentation() |
|
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|
744 .SetSummary(verb + " an image" + (m.empty() ? "" : " (" + m + ")")); |
|
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745 } |
|
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|
746 |
|
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|
747 if (isRendered) |
|
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|
748 { |
|
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|
749 description += (" This function takes scaling into account (`RescaleSlope` and `RescaleIntercept` tags), " |
|
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|
750 "as well as the default windowing stored in the DICOM file (`WindowCenter` and `WindowWidth`tags), " |
|
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|
751 "and can be used to resize the resulting image. Color images are not affected by windowing."); |
|
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|
752 call.GetDocumentation() |
|
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|
753 .SetHttpGetArgument("window-center",RestApiCallDocumentation::Type_Number, "Windowing center", false) |
|
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|
754 .SetHttpGetArgument("window-width",RestApiCallDocumentation::Type_Number, "Windowing width", false) |
|
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|
755 .SetHttpGetArgument("width",RestApiCallDocumentation::Type_Number, "Width of the resized image", false) |
|
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|
756 .SetHttpGetArgument("height",RestApiCallDocumentation::Type_Number, "Height of the resized image", false) |
|
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changeset
|
757 .SetHttpGetArgument("smooth",RestApiCallDocumentation::Type_Boolean, "Whether to smooth image on resize", false); |
|
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|
758 } |
|
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|
759 else |
|
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|
760 { |
|
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|
761 switch (mode) |
|
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|
762 { |
|
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changeset
|
763 case ImageExtractionMode_Preview: |
|
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documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
764 description += " The full dynamic range of grayscale images is rescaled to the [0,255] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
765 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
766 case ImageExtractionMode_UInt8: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
767 description += " Pixels of grayscale images are truncated to the [0,255] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
768 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
769 case ImageExtractionMode_UInt16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
770 description += " Pixels of grayscale images are truncated to the [0,65535] range."; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
771 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
772 case ImageExtractionMode_Int16: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
773 description += (" Pixels of grayscale images are truncated to the [-32768,32767] range. " |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
774 "Negative values must be interpreted according to two's complement."); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
775 break; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
776 default: |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
777 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
778 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
779 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
780 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
781 call.GetDocumentation() |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
782 .SetTag("Instances") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
783 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
784 .SetHttpGetArgument("quality", RestApiCallDocumentation::Type_Number, "Quality for JPEG images (between 1 and 100, defaults to 90)", false) |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
785 .SetHttpHeader("Accept", "Format of the resulting image. Can be `image/png` (default), `image/jpeg` or `image/x-portable-arbitrarymap`") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
786 .AddAnswerType(MimeType_Png, "PNG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
787 .AddAnswerType(MimeType_Jpeg, "JPEG image") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
788 .AddAnswerType(MimeType_Pam, "PAM image (Portable Arbitrary Map)") |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
789 .SetDescription(description); |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
790 |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
791 return; |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
792 } |
|
4cb9f66a1c7c
documenting generation of images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4405
diff
changeset
|
793 |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
794 ServerContext& context = OrthancRestApi::GetContext(call); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
795 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
796 std::string frameId = call.GetUriComponent("frame", "0"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
797 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
798 unsigned int frame; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
799 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
800 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
801 frame = boost::lexical_cast<unsigned int>(frameId); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
802 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
803 catch (boost::bad_lexical_cast&) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
804 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
805 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
806 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
807 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
808 DicomMap dicom; |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
809 std::unique_ptr<ImageAccessor> decoded; |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
810 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
811 try |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
812 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
813 std::string publicId = call.GetUriComponent("id", ""); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
814 |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
815 decoded.reset(context.DecodeDicomFrame(publicId, frame)); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
816 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
817 if (decoded.get() == NULL) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
818 { |
|
3928
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
819 throw OrthancException(ErrorCode_NotImplemented, |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
820 "Cannot decode DICOM instance with ID: " + publicId); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
821 } |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
822 |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
823 if (handler.RequiresDicomTags()) |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
824 { |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
825 /** |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
826 * Retrieve a summary of the DICOM tags, which is |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
827 * necessary to deal with MONOCHROME1 photometric |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
828 * interpretation, and with windowing parameters. |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
829 **/ |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3926
diff
changeset
|
830 ServerContext::DicomCacheLocker locker(context, publicId); |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
831 OrthancConfiguration::DefaultExtractDicomSummary(dicom, locker.GetDicom()); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
832 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
833 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
834 catch (OrthancException& e) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
835 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
836 if (e.GetErrorCode() == ErrorCode_ParameterOutOfRange || |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
837 e.GetErrorCode() == ErrorCode_UnknownResource) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
838 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
839 // The frame number is out of the range for this DICOM |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
840 // instance, the resource is not existent |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
841 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
842 else |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
843 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
844 std::string root = ""; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
845 for (size_t i = 1; i < call.GetFullUri().size(); i++) |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
846 { |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
847 root += "../"; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
848 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
849 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
850 call.GetOutput().Redirect(root + "app/images/unsupported.png"); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
851 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
852 return; |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
853 } |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
854 |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
855 handler.Handle(call, decoded, dicom); |
|
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
856 } |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
857 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
858 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
859 static void DefaultHandler(RestApiGetCall& call, |
|
3712
2a170a8f1faf
replacing std::auto_ptr by std::unique_ptr
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3690
diff
changeset
|
860 std::unique_ptr<ImageAccessor>& decoded, |
|
3685
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
861 ImageExtractionMode mode, |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
862 bool invert) |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
863 { |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
864 ImageToEncode image(decoded, mode, invert); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
865 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
866 HttpContentNegociation negociation; |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
867 EncodePng png(image); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
868 negociation.Register(MIME_PNG, png); |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
869 |
|
2cc34837d694
rendering of RGB24
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3683
diff
changeset
|
870 EncodeJpeg jpeg(image, call); |
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871 negociation.Register(MIME_JPEG, jpeg); |
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872 |
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873 EncodePam pam(image); |
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874 negociation.Register(MIME_PAM, pam); |
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875 |
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876 if (negociation.Apply(call.GetHttpHeaders())) |
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877 { |
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878 image.Answer(call.GetOutput()); |
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879 } |
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880 } |
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881 }; |
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882 |
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883 |
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884 class GetImageHandler : public IDecodedFrameHandler |
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885 { |
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886 private: |
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887 ImageExtractionMode mode_; |
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888 |
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889 public: |
| 4205 | 890 explicit GetImageHandler(ImageExtractionMode mode) : |
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891 mode_(mode) |
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892 { |
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893 } |
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894 |
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895 virtual void Handle(RestApiGetCall& call, |
|
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896 std::unique_ptr<ImageAccessor>& decoded, |
|
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897 const DicomMap& dicom) ORTHANC_OVERRIDE |
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898 { |
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899 bool invert = false; |
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900 |
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901 if (mode_ == ImageExtractionMode_Preview) |
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902 { |
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903 DicomImageInformation info(dicom); |
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904 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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905 } |
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906 |
|
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|
907 DefaultHandler(call, decoded, mode_, invert); |
|
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908 } |
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909 |
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910 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
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911 { |
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912 return mode_ == ImageExtractionMode_Preview; |
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913 } |
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914 }; |
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915 |
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916 |
|
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917 class RenderedFrameHandler : public IDecodedFrameHandler |
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918 { |
|
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919 private: |
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920 static void GetDicomParameters(bool& invert, |
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|
921 float& rescaleSlope, |
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|
922 float& rescaleIntercept, |
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923 float& windowWidth, |
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924 float& windowCenter, |
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|
925 const DicomMap& dicom) |
|
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926 { |
|
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|
927 DicomImageInformation info(dicom); |
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928 |
|
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929 invert = (info.GetPhotometricInterpretation() == PhotometricInterpretation_Monochrome1); |
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|
930 |
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|
931 rescaleSlope = 1.0f; |
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|
932 rescaleIntercept = 0.0f; |
|
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933 |
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934 if (dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_SLOPE) && |
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|
935 dicom.HasTag(Orthanc::DICOM_TAG_RESCALE_INTERCEPT)) |
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|
936 { |
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937 dicom.ParseFloat(rescaleSlope, Orthanc::DICOM_TAG_RESCALE_SLOPE); |
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938 dicom.ParseFloat(rescaleIntercept, Orthanc::DICOM_TAG_RESCALE_INTERCEPT); |
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939 } |
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|
940 |
|
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941 windowWidth = static_cast<float>(1 << info.GetBitsStored()) * rescaleSlope; |
|
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|
942 windowCenter = windowWidth / 2.0f + rescaleIntercept; |
|
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943 |
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|
944 if (dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_CENTER) && |
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945 dicom.HasTag(Orthanc::DICOM_TAG_WINDOW_WIDTH)) |
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|
946 { |
|
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|
947 dicom.ParseFirstFloat(windowCenter, Orthanc::DICOM_TAG_WINDOW_CENTER); |
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|
948 dicom.ParseFirstFloat(windowWidth, Orthanc::DICOM_TAG_WINDOW_WIDTH); |
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|
949 } |
|
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|
950 } |
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|
951 |
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952 static void GetUserArguments(float& windowWidth /* inout */, |
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|
953 float& windowCenter /* inout */, |
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|
954 unsigned int& argWidth, |
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|
955 unsigned int& argHeight, |
|
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|
956 bool& smooth, |
| 4205 | 957 const RestApiGetCall& call) |
|
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|
958 { |
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|
959 static const char* ARG_WINDOW_CENTER = "window-center"; |
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|
960 static const char* ARG_WINDOW_WIDTH = "window-width"; |
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|
961 static const char* ARG_WIDTH = "width"; |
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|
962 static const char* ARG_HEIGHT = "height"; |
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963 static const char* ARG_SMOOTH = "smooth"; |
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964 |
|
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|
965 if (call.HasArgument(ARG_WINDOW_WIDTH)) |
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|
966 { |
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|
967 try |
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|
968 { |
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969 windowWidth = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_WIDTH, "")); |
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970 } |
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|
971 catch (boost::bad_lexical_cast&) |
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|
972 { |
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|
973 throw OrthancException(ErrorCode_ParameterOutOfRange, |
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974 "Bad value for argument: " + std::string(ARG_WINDOW_WIDTH)); |
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975 } |
|
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|
976 } |
|
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changeset
|
977 |
|
2cc34837d694
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parents:
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diff
changeset
|
978 if (call.HasArgument(ARG_WINDOW_CENTER)) |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
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parents:
3640
diff
changeset
|
979 { |
|
3685
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diff
changeset
|
980 try |
|
2cc34837d694
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diff
changeset
|
981 { |
|
2cc34837d694
rendering of RGB24
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changeset
|
982 windowCenter = boost::lexical_cast<float>(call.GetArgument(ARG_WINDOW_CENTER, "")); |
|
2cc34837d694
rendering of RGB24
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|
983 } |
|
2cc34837d694
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changeset
|
984 catch (boost::bad_lexical_cast&) |
|
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diff
changeset
|
985 { |
|
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diff
changeset
|
986 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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|
987 "Bad value for argument: " + std::string(ARG_WINDOW_CENTER)); |
|
2cc34837d694
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changeset
|
988 } |
|
2cc34837d694
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changeset
|
989 } |
|
2cc34837d694
rendering of RGB24
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diff
changeset
|
990 |
|
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diff
changeset
|
991 argWidth = 0; |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
992 argHeight = 0; |
|
3685
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rendering of RGB24
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diff
changeset
|
993 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
994 if (call.HasArgument(ARG_WIDTH)) |
|
3685
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rendering of RGB24
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|
995 { |
|
2cc34837d694
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changeset
|
996 try |
|
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diff
changeset
|
997 { |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
998 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_WIDTH, "")); |
|
3685
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parents:
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diff
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|
999 if (tmp < 0) |
|
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|
1000 { |
|
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rendering of RGB24
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|
1001 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1002 "Argument cannot be negative: " + std::string(ARG_WIDTH)); |
|
3685
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|
1003 } |
|
2cc34837d694
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|
1004 else |
|
2cc34837d694
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changeset
|
1005 { |
|
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changeset
|
1006 argWidth = static_cast<unsigned int>(tmp); |
|
3685
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|
1007 } |
|
2cc34837d694
rendering of RGB24
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changeset
|
1008 } |
|
2cc34837d694
rendering of RGB24
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|
1009 catch (boost::bad_lexical_cast&) |
|
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changeset
|
1010 { |
|
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rendering of RGB24
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changeset
|
1011 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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implementation of "/instances/.../rendered" for grayscale images
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parents:
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diff
changeset
|
1012 "Bad value for argument: " + std::string(ARG_WIDTH)); |
|
3685
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diff
changeset
|
1013 } |
|
3683
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skeleton for new route: /instances/{id}/rendered
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parents:
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diff
changeset
|
1014 } |
|
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changeset
|
1015 |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1016 if (call.HasArgument(ARG_HEIGHT)) |
|
3685
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changeset
|
1017 { |
|
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changeset
|
1018 try |
|
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changeset
|
1019 { |
|
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changeset
|
1020 int tmp = boost::lexical_cast<int>(call.GetArgument(ARG_HEIGHT, "")); |
|
3685
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changeset
|
1021 if (tmp < 0) |
|
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changeset
|
1022 { |
|
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changeset
|
1023 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1024 "Argument cannot be negative: " + std::string(ARG_HEIGHT)); |
|
3685
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|
1025 } |
|
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|
1026 else |
|
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|
1027 { |
|
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changeset
|
1028 argHeight = static_cast<unsigned int>(tmp); |
|
3685
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|
1029 } |
|
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|
1030 } |
|
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|
1031 catch (boost::bad_lexical_cast&) |
|
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|
1032 { |
|
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|
1033 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1034 "Bad value for argument: " + std::string(ARG_HEIGHT)); |
|
3685
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|
1035 } |
|
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changeset
|
1036 } |
|
2cc34837d694
rendering of RGB24
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changeset
|
1037 |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1038 smooth = false; |
|
3685
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|
1039 |
|
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changeset
|
1040 if (call.HasArgument(ARG_SMOOTH)) |
|
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|
1041 { |
|
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changeset
|
1042 std::string value = call.GetArgument(ARG_SMOOTH, ""); |
|
2cc34837d694
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diff
changeset
|
1043 if (value == "0" || |
|
2cc34837d694
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diff
changeset
|
1044 value == "false") |
|
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changeset
|
1045 { |
|
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changeset
|
1046 smooth = false; |
|
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|
1047 } |
|
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|
1048 else if (value == "1" || |
|
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rendering of RGB24
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diff
changeset
|
1049 value == "true") |
|
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changeset
|
1050 { |
|
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changeset
|
1051 smooth = true; |
|
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|
1052 } |
|
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|
1053 else |
|
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changeset
|
1054 { |
|
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changeset
|
1055 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
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rendering of RGB24
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|
1056 "Argument must be Boolean: " + std::string(ARG_SMOOTH)); |
|
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|
1057 } |
|
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changeset
|
1058 } |
|
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|
1059 } |
|
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diff
changeset
|
1060 |
|
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changeset
|
1061 |
|
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changeset
|
1062 public: |
|
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changeset
|
1063 virtual void Handle(RestApiGetCall& call, |
|
3712
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replacing std::auto_ptr by std::unique_ptr
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|
1064 std::unique_ptr<ImageAccessor>& decoded, |
|
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|
1065 const DicomMap& dicom) ORTHANC_OVERRIDE |
|
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|
1066 { |
|
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changeset
|
1067 bool invert; |
|
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|
1068 float rescaleSlope, rescaleIntercept, windowWidth, windowCenter; |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1069 GetDicomParameters(invert, rescaleSlope, rescaleIntercept, windowWidth, windowCenter, dicom); |
| 3686 | 1070 |
|
3690
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changeset
|
1071 unsigned int argWidth, argHeight; |
|
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changeset
|
1072 bool smooth; |
|
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changeset
|
1073 GetUserArguments(windowWidth, windowCenter, argWidth, argHeight, smooth, call); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1074 |
|
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changeset
|
1075 unsigned int targetWidth = decoded->GetWidth(); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1076 unsigned int targetHeight = decoded->GetHeight(); |
| 3686 | 1077 |
| 1078 if (decoded->GetWidth() != 0 && | |
| 1079 decoded->GetHeight() != 0) | |
| 1080 { | |
| 1081 float ratio = 1; | |
| 1082 | |
|
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changeset
|
1083 if (argWidth != 0 && |
|
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diff
changeset
|
1084 argHeight != 0) |
| 3686 | 1085 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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diff
changeset
|
1086 float ratioX = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1087 float ratioY = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
|
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1088 ratio = std::min(ratioX, ratioY); |
| 3686 | 1089 } |
|
3690
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changeset
|
1090 else if (argWidth != 0) |
| 3686 | 1091 { |
|
3690
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implementation of "/instances/.../rendered" for grayscale images
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changeset
|
1092 ratio = static_cast<float>(argWidth) / static_cast<float>(decoded->GetWidth()); |
| 3686 | 1093 } |
|
3690
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1094 else if (argHeight != 0) |
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1095 { |
|
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1096 ratio = static_cast<float>(argHeight) / static_cast<float>(decoded->GetHeight()); |
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1097 } |
|
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1098 |
|
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1099 targetWidth = boost::math::iround(ratio * static_cast<float>(decoded->GetWidth())); |
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1100 targetHeight = boost::math::iround(ratio * static_cast<float>(decoded->GetHeight())); |
| 3686 | 1101 } |
| 1102 | |
|
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1103 if (decoded->GetFormat() == PixelFormat_RGB24) |
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1104 { |
|
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1105 if (targetWidth == decoded->GetWidth() && |
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1106 targetHeight == decoded->GetHeight()) |
|
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1107 { |
|
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1108 DefaultHandler(call, decoded, ImageExtractionMode_Preview, false); |
|
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1109 } |
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1110 else |
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1111 { |
|
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1112 std::unique_ptr<ImageAccessor> resized( |
|
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1113 new Image(decoded->GetFormat(), targetWidth, targetHeight, false)); |
|
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1114 |
|
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1115 if (smooth && |
|
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1116 (targetWidth < decoded->GetWidth() || |
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1117 targetHeight < decoded->GetHeight())) |
|
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1118 { |
|
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1119 ImageProcessing::SmoothGaussian5x5(*decoded, false /* be fast, don't round */); |
|
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1120 } |
|
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1121 |
|
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1122 ImageProcessing::Resize(*resized, *decoded); |
|
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1123 DefaultHandler(call, resized, ImageExtractionMode_Preview, false); |
|
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1124 } |
|
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1125 } |
| 3686 | 1126 else |
| 1127 { | |
|
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1128 // Grayscale image: (1) convert to Float32, (2) apply |
|
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1129 // windowing to get a Grayscale8, (3) possibly resize |
|
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1130 |
|
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1131 Image converted(PixelFormat_Float32, decoded->GetWidth(), decoded->GetHeight(), false); |
|
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1132 ImageProcessing::Convert(converted, *decoded); |
|
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1133 |
|
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1134 // Avoid divisions by zero |
|
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1135 if (windowWidth <= 1.0f) |
|
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1136 { |
|
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1137 windowWidth = 1; |
|
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1138 } |
|
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1139 |
|
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1140 if (std::abs(rescaleSlope) <= 0.1f) |
|
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|
1141 { |
|
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|
1142 rescaleSlope = 0.1f; |
|
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1143 } |
|
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1144 |
|
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|
1145 const float scaling = 255.0f * rescaleSlope / windowWidth; |
|
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|
1146 const float offset = (rescaleIntercept - windowCenter + windowWidth / 2.0f) / rescaleSlope; |
|
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|
1147 |
|
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|
1148 std::unique_ptr<ImageAccessor> rescaled(new Image(PixelFormat_Grayscale8, decoded->GetWidth(), decoded->GetHeight(), false)); |
|
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|
1149 ImageProcessing::ShiftScale(*rescaled, converted, offset, scaling, false); |
|
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|
1150 |
|
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|
1151 if (targetWidth == decoded->GetWidth() && |
|
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|
1152 targetHeight == decoded->GetHeight()) |
|
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|
1153 { |
|
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|
1154 DefaultHandler(call, rescaled, ImageExtractionMode_UInt8, invert); |
|
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|
1155 } |
|
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|
1156 else |
|
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|
1157 { |
|
3712
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|
1158 std::unique_ptr<ImageAccessor> resized( |
|
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|
1159 new Image(PixelFormat_Grayscale8, targetWidth, targetHeight, false)); |
|
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|
1160 |
|
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|
1161 if (smooth && |
|
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|
1162 (targetWidth < decoded->GetWidth() || |
|
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|
1163 targetHeight < decoded->GetHeight())) |
|
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|
1164 { |
|
4065
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|
1165 ImageProcessing::SmoothGaussian5x5(*rescaled, false /* be fast, don't round */); |
|
3690
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|
1166 } |
|
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|
1167 |
|
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|
1168 ImageProcessing::Resize(*resized, *rescaled); |
|
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changeset
|
1169 DefaultHandler(call, resized, ImageExtractionMode_UInt8, invert); |
|
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|
1170 } |
| 3686 | 1171 } |
|
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|
1172 } |
|
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1173 |
|
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|
1174 virtual bool RequiresDicomTags() const ORTHANC_OVERRIDE |
|
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1175 { |
|
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1176 return true; |
|
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1177 } |
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|
1178 }; |
|
3600
4066998150ef
/instances/{id}/preview route now takes the windowing into account
Alain Mazy <alain@mazy.be>
parents:
3203
diff
changeset
|
1179 } |
|
4066998150ef
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parents:
3203
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changeset
|
1180 |
|
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|
1181 |
|
751
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parents:
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changeset
|
1182 template <enum ImageExtractionMode mode> |
| 974 | 1183 static void GetImage(RestApiGetCall& call) |
|
751
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|
1184 { |
|
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changeset
|
1185 Semaphore::Locker locker(throttlingSemaphore_); |
|
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|
1186 |
|
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changeset
|
1187 GetImageHandler handler(mode); |
|
4406
4cb9f66a1c7c
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changeset
|
1188 IDecodedFrameHandler::Apply(call, handler, mode, false /* not rendered */); |
|
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|
1189 } |
|
1906
d7c1cb559431
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1902
diff
changeset
|
1190 |
|
1826
ac5b0b4e2434
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1824
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|
1191 |
|
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|
1192 static void GetRenderedFrame(RestApiGetCall& call) |
|
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1193 { |
|
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|
1194 Semaphore::Locker locker(throttlingSemaphore_); |
|
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|
1195 |
|
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|
1196 RenderedFrameHandler handler; |
|
4406
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|
1197 IDecodedFrameHandler::Apply(call, handler, ImageExtractionMode_Preview /* arbitrary value */, true); |
|
751
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|
1198 } |
|
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1199 |
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1200 |
| 974 | 1201 static void GetMatlabImage(RestApiGetCall& call) |
|
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1202 { |
| 4414 | 1203 if (call.IsDocumentation()) |
| 1204 { | |
| 1205 std::string description; | |
| 1206 | |
| 1207 if (call.HasUriComponent("frame")) | |
| 1208 { | |
| 1209 description = "Decode one frame of interest from the given DICOM instance"; | |
| 1210 call.GetDocumentation() | |
| 1211 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1212 } | |
| 1213 else | |
| 1214 { | |
| 1215 description = "Decode the first frame of the given DICOM instance."; | |
| 1216 } | |
| 1217 | |
| 1218 call.GetDocumentation() | |
| 1219 .SetTag("Instances") | |
| 1220 .SetSummary("Decode frame for Matlab") | |
| 1221 .SetDescription(description + ", and export this frame as a Octave/Matlab matrix to be imported with `eval()`: " | |
| 1222 "https://book.orthanc-server.com/faq/matlab.html") | |
| 1223 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 1224 .AddAnswerType(MimeType_PlainText, "Octave/Matlab matrix"); | |
| 1225 return; | |
| 1226 } | |
| 1227 | |
|
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1228 Semaphore::Locker locker(throttlingSemaphore_); |
|
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|
1229 |
|
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1230 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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1231 |
|
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1232 std::string frameId = call.GetUriComponent("frame", "0"); |
|
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1233 |
|
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1234 unsigned int frame; |
|
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|
1235 try |
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1236 { |
|
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1237 frame = boost::lexical_cast<unsigned int>(frameId); |
|
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1238 } |
|
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|
1239 catch (boost::bad_lexical_cast&) |
|
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1240 { |
|
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1241 return; |
|
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1242 } |
|
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1243 |
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|
1244 std::string publicId = call.GetUriComponent("id", ""); |
|
3928
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1245 std::unique_ptr<ImageAccessor> decoded(context.DecodeDicomFrame(publicId, frame)); |
|
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1246 |
|
3928
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ServerContext::DecodeDicomFrame()
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|
1247 if (decoded.get() == NULL) |
|
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1248 { |
|
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ServerContext::DecodeDicomFrame()
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1249 throw OrthancException(ErrorCode_NotImplemented, |
|
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1250 "Cannot decode DICOM instance with ID: " + publicId); |
|
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ServerContext::DecodeDicomFrame()
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1251 } |
|
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1252 else |
|
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ServerContext::DecodeDicomFrame()
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1253 { |
|
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ServerContext::DecodeDicomFrame()
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|
1254 std::string result; |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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|
1255 decoded->ToMatlabString(result); |
|
4cdc875510d1
ServerContext::DecodeDicomFrame()
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1256 call.GetOutput().AnswerBuffer(result, MimeType_PlainText); |
|
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ServerContext::DecodeDicomFrame()
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|
1257 } |
|
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1258 } |
|
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|
1259 |
|
87791ebc1f50
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|
1260 |
|
2408
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New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
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diff
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|
1261 template <bool GzipCompression> |
|
1924
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diff
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|
1262 static void GetRawFrame(RestApiGetCall& call) |
|
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|
1263 { |
| 4408 | 1264 if (call.IsDocumentation()) |
| 1265 { | |
| 1266 call.GetDocumentation() | |
| 1267 .SetTag("Instances") | |
| 1268 .SetSummary("Access raw frame" + std::string(GzipCompression ? " (compressed)" : "")) | |
| 1269 .SetDescription("Access the raw content of one individual frame of the DICOM instance of interest, " | |
| 1270 "bypassing image decoding. This is notably useful to access the source files " | |
| 1271 "in compressed transfer syntaxes." + | |
| 1272 std::string(GzipCompression ? " The image is compressed using gzip" : "")) | |
| 1273 .SetUriArgument("frame", RestApiCallDocumentation::Type_Number, "Index of the frame (starts at `0`)"); | |
| 1274 | |
| 1275 if (GzipCompression) | |
| 1276 { | |
| 1277 call.GetDocumentation().AddAnswerType(MimeType_Gzip, "The raw frame, compressed using gzip"); | |
| 1278 } | |
| 1279 else | |
| 1280 { | |
| 1281 call.GetDocumentation().AddAnswerType(MimeType_Binary, "The raw frame"); | |
| 1282 } | |
| 1283 return; | |
| 1284 } | |
| 1285 | |
|
1924
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|
1286 std::string frameId = call.GetUriComponent("frame", "0"); |
|
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1287 |
|
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|
1288 unsigned int frame; |
|
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|
1289 try |
|
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|
1290 { |
|
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|
1291 frame = boost::lexical_cast<unsigned int>(frameId); |
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|
1292 } |
|
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|
1293 catch (boost::bad_lexical_cast&) |
|
1924
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|
1294 { |
|
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|
1295 return; |
|
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|
1296 } |
|
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|
1297 |
|
6c73df12ca51
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|
1298 std::string publicId = call.GetUriComponent("id", ""); |
|
2908
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|
1299 std::string raw; |
|
9d277f8ad698
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|
1300 MimeType mime; |
|
1924
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|
1301 |
|
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New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
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1302 { |
|
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|
1303 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), publicId); |
|
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|
1304 locker.GetDicom().GetRawFrame(raw, mime, frame); |
|
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1305 } |
|
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1306 |
|
2408
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|
1307 if (GzipCompression) |
|
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|
1308 { |
|
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|
1309 GzipCompressor gzip; |
|
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|
1310 std::string compressed; |
|
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|
1311 gzip.Compress(compressed, raw.empty() ? NULL : raw.c_str(), raw.size()); |
|
2908
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|
1312 call.GetOutput().AnswerBuffer(compressed, MimeType_Gzip); |
|
2408
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New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
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1313 } |
|
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1314 else |
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1315 { |
|
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|
1316 call.GetOutput().AnswerBuffer(raw, mime); |
|
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1317 } |
|
1924
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1318 } |
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1319 |
|
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1320 |
| 974 | 1321 static void GetResourceStatistics(RestApiGetCall& call) |
|
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1322 { |
| 4418 | 1323 if (call.IsDocumentation()) |
| 1324 { | |
| 1325 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1326 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1327 call.GetDocumentation() | |
| 1328 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1329 .SetSummary("Get " + r + " statistics") | |
| 1330 .SetDescription("Get statistics about the given " + r) | |
| 1331 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1332 .SetAnswerField("DiskSize", RestApiCallDocumentation::Type_String, | |
| 1333 "Size of the " + r + " on the disk in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1334 .SetAnswerField("DiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1335 "Size of the " + r + " on the disk, expressed in megabytes (MB)") | |
| 1336 .SetAnswerField("UncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1337 "Size of the " + r + " after decompression in bytes, expressed as a string for 64bit compatibility with JSON") | |
| 1338 .SetAnswerField("UncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1339 "Size of the " + r + " after decompression, expressed in megabytes (MB). " | |
| 1340 "This is different from `DiskSizeMB` iff `StorageCompression` is `true`.") | |
| 1341 .SetAnswerField("DicomDiskSize", RestApiCallDocumentation::Type_String, | |
| 1342 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1343 .SetAnswerField("DicomDiskSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1344 "Size on the disk of the DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1345 .SetAnswerField("DicomUncompressedSize", RestApiCallDocumentation::Type_String, | |
| 1346 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in bytes") | |
| 1347 .SetAnswerField("DicomUncompressedSizeMB", RestApiCallDocumentation::Type_Number, | |
| 1348 "Size on the disk of the uncompressed DICOM instances associated with the " + r + ", expressed in megabytes (MB)") | |
| 1349 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/statistics", true); | |
| 1350 | |
| 1351 switch (t) | |
| 1352 { | |
| 1353 // Do NOT add "break" below this point! | |
| 1354 case ResourceType_Patient: | |
| 1355 call.GetDocumentation().SetAnswerField("CountStudies", RestApiCallDocumentation::Type_Number, | |
| 1356 "Number of child studies within this " + r); | |
| 1357 | |
| 1358 case ResourceType_Study: | |
| 1359 call.GetDocumentation().SetAnswerField("CountSeries", RestApiCallDocumentation::Type_Number, | |
| 1360 "Number of child series within this " + r); | |
| 1361 | |
| 1362 case ResourceType_Series: | |
| 1363 call.GetDocumentation().SetAnswerField("CountInstances", RestApiCallDocumentation::Type_Number, | |
| 1364 "Number of child instances within this " + r); | |
| 1365 | |
| 1366 case ResourceType_Instance: | |
| 1367 default: | |
| 1368 break; | |
| 1369 } | |
| 1370 | |
| 1371 return; | |
| 1372 } | |
| 1373 | |
|
3174
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1374 static const uint64_t MEGA_BYTES = 1024 * 1024; |
|
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1375 |
|
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|
1376 std::string publicId = call.GetUriComponent("id", ""); |
|
3174
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1377 |
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1378 ResourceType type; |
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1379 uint64_t diskSize, uncompressedSize, dicomDiskSize, dicomUncompressedSize; |
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1380 unsigned int countStudies, countSeries, countInstances; |
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1381 OrthancRestApi::GetIndex(call).GetResourceStatistics( |
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1382 type, diskSize, uncompressedSize, countStudies, countSeries, |
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1383 countInstances, dicomDiskSize, dicomUncompressedSize, publicId); |
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1384 |
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1385 Json::Value result = Json::objectValue; |
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1386 result["DiskSize"] = boost::lexical_cast<std::string>(diskSize); |
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1387 result["DiskSizeMB"] = static_cast<unsigned int>(diskSize / MEGA_BYTES); |
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1388 result["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
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1389 result["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
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1390 |
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1391 result["DicomDiskSize"] = boost::lexical_cast<std::string>(dicomDiskSize); |
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1392 result["DicomDiskSizeMB"] = static_cast<unsigned int>(dicomDiskSize / MEGA_BYTES); |
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1393 result["DicomUncompressedSize"] = boost::lexical_cast<std::string>(dicomUncompressedSize); |
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1394 result["DicomUncompressedSizeMB"] = static_cast<unsigned int>(dicomUncompressedSize / MEGA_BYTES); |
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1395 |
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1396 switch (type) |
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1397 { |
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1398 // Do NOT add "break" below this point! |
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1399 case ResourceType_Patient: |
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1400 result["CountStudies"] = countStudies; |
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1401 |
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1402 case ResourceType_Study: |
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1403 result["CountSeries"] = countSeries; |
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1404 |
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1405 case ResourceType_Series: |
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1406 result["CountInstances"] = countInstances; |
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1407 |
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1408 case ResourceType_Instance: |
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1409 default: |
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1410 break; |
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1411 } |
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1412 |
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1413 call.GetOutput().AnswerJson(result); |
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1414 } |
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1415 |
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1416 |
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1417 |
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1418 // Handling of metadata ----------------------------------------------------- |
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1419 |
| 4205 | 1420 static void CheckValidResourceType(const RestApiCall& call) |
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1421 { |
| 4409 | 1422 const std::string resourceType = call.GetFullUri() [0]; |
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1423 StringToResourceType(resourceType.c_str()); |
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1424 } |
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1425 |
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1426 |
| 974 | 1427 static void ListMetadata(RestApiGetCall& call) |
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1428 { |
| 4414 | 1429 if (call.IsDocumentation()) |
| 1430 { | |
| 1431 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1432 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1433 call.GetDocumentation() | |
| 1434 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1435 .SetSummary("List metadata") | |
| 1436 .SetDescription("Get the list of metadata that are associated with the given " + r) | |
| 1437 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1438 .SetHttpGetArgument("expand", RestApiCallDocumentation::Type_String, | |
| 1439 "If present, also retrieve the value of the individual metadata", false) | |
| 1440 .AddAnswerType(MimeType_Json, "JSON array containing the names of the available metadata, " | |
| 1441 "or JSON associative array mapping metadata to their values (if `expand` argument is provided)") | |
| 1442 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/metadata", true); | |
| 1443 return; | |
| 1444 } | |
| 1445 | |
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1446 CheckValidResourceType(call); |
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1447 |
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1448 std::string publicId = call.GetUriComponent("id", ""); |
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1449 std::map<MetadataType, std::string> metadata; |
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1450 |
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1451 OrthancRestApi::GetIndex(call).GetAllMetadata(metadata, publicId); |
|
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1452 |
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1453 Json::Value result; |
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1454 |
|
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1455 if (call.HasArgument("expand")) |
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1456 { |
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1457 result = Json::objectValue; |
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1458 |
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1459 for (std::map<MetadataType, std::string>::const_iterator |
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1460 it = metadata.begin(); it != metadata.end(); ++it) |
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1461 { |
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1462 std::string key = EnumerationToString(it->first); |
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1463 result[key] = it->second; |
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1464 } |
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1465 } |
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1466 else |
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1467 { |
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1468 result = Json::arrayValue; |
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1469 |
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1470 for (std::map<MetadataType, std::string>::const_iterator |
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1471 it = metadata.begin(); it != metadata.end(); ++it) |
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1472 { |
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1473 result.append(EnumerationToString(it->first)); |
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1474 } |
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1475 } |
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1476 |
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1477 call.GetOutput().AnswerJson(result); |
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1478 } |
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1479 |
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1480 |
| 974 | 1481 static void GetMetadata(RestApiGetCall& call) |
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1482 { |
| 4414 | 1483 if (call.IsDocumentation()) |
| 1484 { | |
| 1485 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1486 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1487 call.GetDocumentation() | |
| 1488 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1489 .SetSummary("Get metadata") | |
| 1490 .SetDescription("Get the value of a metadata that is associated with the given " + r) | |
| 1491 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1492 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
| 1493 .AddAnswerType(MimeType_PlainText, "Value of the metadata"); | |
| 1494 return; | |
| 1495 } | |
| 1496 | |
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1497 CheckValidResourceType(call); |
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1498 |
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1499 std::string publicId = call.GetUriComponent("id", ""); |
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1500 std::string name = call.GetUriComponent("name", ""); |
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1501 MetadataType metadata = StringToMetadata(name); |
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1502 |
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1503 std::string value; |
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1504 if (OrthancRestApi::GetIndex(call).LookupMetadata(value, publicId, metadata)) |
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1505 { |
|
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1506 call.GetOutput().AnswerBuffer(value, MimeType_PlainText); |
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1507 } |
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1508 } |
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1509 |
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1510 |
| 974 | 1511 static void DeleteMetadata(RestApiDeleteCall& call) |
|
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|
1512 { |
| 4414 | 1513 if (call.IsDocumentation()) |
| 1514 { | |
| 1515 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1516 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1517 call.GetDocumentation() | |
| 1518 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1519 .SetSummary("Delete metadata") | |
| 1520 .SetDescription("Delete some metadata associated with the given DICOM " + r + | |
| 1521 ". This call will fail if trying to delete a system metadata (i.e. whose index is < 1024).") | |
| 1522 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1523 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)"); | |
| 1524 return; | |
| 1525 } | |
| 1526 | |
|
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|
1527 CheckValidResourceType(call); |
|
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|
1528 |
|
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diff
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|
1529 std::string publicId = call.GetUriComponent("id", ""); |
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|
1530 std::string name = call.GetUriComponent("name", ""); |
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|
1531 MetadataType metadata = StringToMetadata(name); |
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|
1532 |
|
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1759
diff
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|
1533 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
|
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|
1534 { |
|
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1535 OrthancRestApi::GetIndex(call).DeleteMetadata(publicId, metadata); |
|
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|
1536 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
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|
1537 } |
|
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|
1538 else |
|
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|
1539 { |
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1540 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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|
1541 } |
|
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|
1542 } |
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|
1543 |
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|
1544 |
| 974 | 1545 static void SetMetadata(RestApiPutCall& call) |
|
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1546 { |
| 4414 | 1547 if (call.IsDocumentation()) |
| 1548 { | |
| 1549 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1550 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1551 call.GetDocumentation() | |
| 1552 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1553 .SetSummary("Set metadata") | |
| 1554 .SetDescription("Set the value of some metadata in the given DICOM " + r + | |
| 1555 ". This call will fail if trying to modify a system metadata (i.e. whose index is < 1024).") | |
| 1556 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1557 .SetUriArgument("name", "The name of the metadata, or its index (cf. `UserMetadata` configuration option)") | |
| 1558 .AddRequestType(MimeType_PlainText, "String value of the metadata"); | |
| 1559 return; | |
| 1560 } | |
| 1561 | |
|
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1562 CheckValidResourceType(call); |
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|
1563 |
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|
1564 std::string publicId = call.GetUriComponent("id", ""); |
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|
1565 std::string name = call.GetUriComponent("name", ""); |
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|
1566 MetadataType metadata = StringToMetadata(name); |
|
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diff
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|
1567 |
|
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|
1568 std::string value; |
|
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|
1569 call.BodyToString(value); |
|
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|
1570 |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1571 if (IsUserMetadata(metadata)) // It is forbidden to modify internal metadata |
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|
1572 { |
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|
1573 // It is forbidden to modify internal metadata |
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|
1574 OrthancRestApi::GetIndex(call).SetMetadata(publicId, metadata, value); |
|
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|
1575 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
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1576 } |
|
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|
1577 else |
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|
1578 { |
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|
1579 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
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|
1580 } |
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1581 } |
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|
1582 |
|
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|
1583 |
|
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|
1584 |
|
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|
1585 |
|
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|
1586 // Handling of attached files ----------------------------------------------- |
|
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|
1587 |
| 974 | 1588 static void ListAttachments(RestApiGetCall& call) |
|
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|
1589 { |
| 4409 | 1590 if (call.IsDocumentation()) |
| 1591 { | |
| 1592 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1593 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1594 call.GetDocumentation() | |
| 1595 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1596 .SetSummary("List attachments") | |
| 1597 .SetDescription("Get the list of attachments that are associated with the given " + r) | |
| 1598 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1599 .AddAnswerType(MimeType_Json, "JSON array containing the names of the attachments") | |
| 1600 .SetHttpGetSample(GetDocumentationSampleResource(t) + "/attachments", true); | |
| 1601 return; | |
| 1602 } | |
| 1603 | |
| 1604 const std::string resourceType = call.GetFullUri() [0]; | |
| 1605 const std::string publicId = call.GetUriComponent("id", ""); | |
|
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|
1606 std::list<FileContentType> attachments; |
|
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|
1607 OrthancRestApi::GetIndex(call).ListAvailableAttachments(attachments, publicId, StringToResourceType(resourceType.c_str())); |
|
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|
1608 |
|
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|
1609 Json::Value result = Json::arrayValue; |
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|
1610 |
|
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|
1611 for (std::list<FileContentType>::const_iterator |
|
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|
1612 it = attachments.begin(); it != attachments.end(); ++it) |
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|
1613 { |
|
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|
1614 result.append(EnumerationToString(*it)); |
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|
1615 } |
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|
1616 |
|
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|
1617 call.GetOutput().AnswerJson(result); |
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|
1618 } |
|
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|
1619 |
|
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|
1620 |
| 974 | 1621 static bool GetAttachmentInfo(FileInfo& info, RestApiCall& call) |
|
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1622 { |
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|
1623 CheckValidResourceType(call); |
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|
1624 |
|
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|
1625 std::string publicId = call.GetUriComponent("id", ""); |
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|
1626 std::string name = call.GetUriComponent("name", ""); |
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|
1627 FileContentType contentType = StringToContentType(name); |
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|
1628 |
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1629 return OrthancRestApi::GetIndex(call).LookupAttachment(info, publicId, contentType); |
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|
1630 } |
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|
1631 |
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|
1632 |
| 974 | 1633 static void GetAttachmentOperations(RestApiGetCall& call) |
|
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|
1634 { |
| 4409 | 1635 if (call.IsDocumentation()) |
| 1636 { | |
| 1637 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1638 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1639 call.GetDocumentation() | |
| 1640 .SetTag("Other") | |
| 4414 | 1641 .SetSummary("List operations on attachments") |
| 1642 .SetDescription("Get the list of the operations that are available for attachments associated with the given " + r) | |
| 4409 | 1643 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1644 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1645 .AddAnswerType(MimeType_Json, "List of the available operations") |
| 1646 .SetHttpGetSample("https://demo.orthanc-server.com/instances/d94d9a03-3003b047-a4affc69-322313b2-680530a2/attachments/dicom", true); | |
| 1647 return; | |
| 1648 } | |
| 1649 | |
|
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1650 FileInfo info; |
|
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|
1651 if (GetAttachmentInfo(info, call)) |
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|
1652 { |
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|
1653 Json::Value operations = Json::arrayValue; |
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1654 |
|
1700
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1556
diff
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|
1655 operations.append("compress"); |
|
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1656 operations.append("compressed-data"); |
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|
1657 |
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|
1658 if (info.GetCompressedMD5() != "") |
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|
1659 { |
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|
1660 operations.append("compressed-md5"); |
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|
1661 } |
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|
1662 |
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|
1663 operations.append("compressed-size"); |
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|
1664 operations.append("data"); |
|
1700
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1556
diff
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|
1665 operations.append("is-compressed"); |
|
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|
1666 |
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|
1667 if (info.GetUncompressedMD5() != "") |
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|
1668 { |
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|
1669 operations.append("md5"); |
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|
1670 } |
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1671 |
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1672 operations.append("size"); |
|
1700
f5ddbd9239dd
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|
1673 operations.append("uncompress"); |
|
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1674 |
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1675 if (info.GetCompressedMD5() != "" && |
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1676 info.GetUncompressedMD5() != "") |
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|
1677 { |
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1678 operations.append("verify-md5"); |
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1679 } |
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1680 |
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1681 call.GetOutput().AnswerJson(operations); |
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1682 } |
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1683 } |
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1684 |
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1685 |
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1686 template <int uncompress> |
| 974 | 1687 static void GetAttachmentData(RestApiGetCall& call) |
|
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1688 { |
| 4409 | 1689 if (call.IsDocumentation()) |
| 1690 { | |
| 1691 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1692 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1693 call.GetDocumentation() | |
| 1694 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1695 .SetSummary("Get attachment" + std::string(uncompress ? "" : " (no decompression)")) | |
| 1696 .SetDescription("Get the (binary) content of one attachment associated with the given " + r + | |
| 4418 | 1697 std::string(uncompress ? "" : ". The attachment will not be decompressed if `StorageCompression` is `true`.")) |
| 4409 | 1698 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1699 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1700 .AddAnswerType(MimeType_Binary, "The attachment"); |
| 1701 return; | |
| 1702 } | |
| 1703 | |
|
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1704 ServerContext& context = OrthancRestApi::GetContext(call); |
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1705 |
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1706 CheckValidResourceType(call); |
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1707 |
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1708 std::string publicId = call.GetUriComponent("id", ""); |
|
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1709 FileContentType type = StringToContentType(call.GetUriComponent("name", "")); |
|
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1710 |
|
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1711 if (uncompress) |
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1712 { |
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1713 context.AnswerAttachment(call.GetOutput(), publicId, type); |
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1714 } |
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1715 else |
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1716 { |
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1717 // Return the raw data (possibly compressed), as stored on the filesystem |
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1718 std::string content; |
|
2128
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Sebastien Jodogne <s.jodogne@gmail.com>
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1719 context.ReadAttachment(content, publicId, type, false); |
|
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1720 call.GetOutput().AnswerBuffer(content, MimeType_Binary); |
|
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1721 } |
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1722 } |
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1723 |
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1724 |
| 974 | 1725 static void GetAttachmentSize(RestApiGetCall& call) |
|
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1726 { |
| 4409 | 1727 if (call.IsDocumentation()) |
| 1728 { | |
| 1729 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1730 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1731 call.GetDocumentation() | |
| 1732 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1733 .SetSummary("Get size of attachment") | |
| 1734 .SetDescription("Get the size of one attachment associated with the given " + r) | |
| 1735 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1736 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4409 | 1737 .AddAnswerType(MimeType_PlainText, "The size of the attachment"); |
| 1738 return; | |
| 1739 } | |
| 1740 | |
|
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1741 FileInfo info; |
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1742 if (GetAttachmentInfo(info, call)) |
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1743 { |
|
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1744 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedSize()), MimeType_PlainText); |
|
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1745 } |
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1746 } |
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1747 |
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1748 |
| 974 | 1749 static void GetAttachmentCompressedSize(RestApiGetCall& call) |
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1750 { |
| 4409 | 1751 if (call.IsDocumentation()) |
| 1752 { | |
| 1753 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1754 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1755 call.GetDocumentation() | |
| 1756 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 4410 | 1757 .SetSummary("Get size of attachment on disk") |
| 4409 | 1758 .SetDescription("Get the size of one attachment associated with the given " + r + ", as stored on the disk. " |
| 4413 | 1759 "This is different from `.../size` iff `EnableStorage` is `true`.") |
| 4409 | 1760 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1761 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1762 .AddAnswerType(MimeType_PlainText, "The size of the attachment, as stored on the disk"); |
| 4409 | 1763 return; |
| 1764 } | |
| 1765 | |
|
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1766 FileInfo info; |
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1767 if (GetAttachmentInfo(info, call)) |
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1768 { |
|
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1769 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedSize()), MimeType_PlainText); |
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1770 } |
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1771 } |
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1772 |
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1773 |
| 974 | 1774 static void GetAttachmentMD5(RestApiGetCall& call) |
|
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1775 { |
| 4410 | 1776 if (call.IsDocumentation()) |
| 1777 { | |
| 1778 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1779 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1780 call.GetDocumentation() | |
| 1781 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1782 .SetSummary("Get MD5 of attachment") | |
| 1783 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r) | |
| 1784 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1785 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1786 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment"); |
| 1787 return; | |
| 1788 } | |
| 1789 | |
|
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1790 FileInfo info; |
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1791 if (GetAttachmentInfo(info, call) && |
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1792 info.GetUncompressedMD5() != "") |
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1793 { |
|
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1794 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetUncompressedMD5()), MimeType_PlainText); |
|
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1795 } |
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1796 } |
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1797 |
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1798 |
| 974 | 1799 static void GetAttachmentCompressedMD5(RestApiGetCall& call) |
|
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1800 { |
| 4410 | 1801 if (call.IsDocumentation()) |
| 1802 { | |
| 1803 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1804 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1805 call.GetDocumentation() | |
| 1806 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1807 .SetSummary("Get MD5 of attachment on disk") | |
| 1808 .SetDescription("Get the MD5 hash of one attachment associated with the given " + r + ", as stored on the disk. " | |
| 4413 | 1809 "This is different from `.../md5` iff `EnableStorage` is `true`.") |
| 4410 | 1810 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1811 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1812 .AddAnswerType(MimeType_PlainText, "The MD5 of the attachment, as stored on the disk"); |
| 1813 return; | |
| 1814 } | |
| 1815 | |
|
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1816 FileInfo info; |
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1817 if (GetAttachmentInfo(info, call) && |
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1818 info.GetCompressedMD5() != "") |
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1819 { |
|
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1820 call.GetOutput().AnswerBuffer(boost::lexical_cast<std::string>(info.GetCompressedMD5()), MimeType_PlainText); |
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1821 } |
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1822 } |
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1823 |
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1824 |
| 974 | 1825 static void VerifyAttachment(RestApiPostCall& call) |
|
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1826 { |
| 4410 | 1827 if (call.IsDocumentation()) |
| 1828 { | |
| 1829 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1830 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1831 call.GetDocumentation() | |
| 1832 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1833 .SetSummary("Verify attachment") | |
| 1834 .SetDescription("Verify that the attachment is not corrupted, by validating its MD5 hash") | |
| 1835 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1836 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4410 | 1837 .AddAnswerType(MimeType_Json, "On success, a valid JSON object is returned"); |
| 1838 return; | |
| 1839 } | |
| 1840 | |
|
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1841 ServerContext& context = OrthancRestApi::GetContext(call); |
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1842 CheckValidResourceType(call); |
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1843 |
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1844 std::string publicId = call.GetUriComponent("id", ""); |
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1845 std::string name = call.GetUriComponent("name", ""); |
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1846 |
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1847 FileInfo info; |
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1848 if (!GetAttachmentInfo(info, call) || |
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1849 info.GetCompressedMD5() == "" || |
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1850 info.GetUncompressedMD5() == "") |
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1851 { |
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1852 // Inexistent resource, or no MD5 available |
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1853 return; |
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1854 } |
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1855 |
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1856 bool ok = false; |
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1857 |
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1858 // First check whether the compressed data is correctly stored in the disk |
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1859 std::string data; |
|
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1860 context.ReadAttachment(data, publicId, StringToContentType(name), false); |
|
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1861 |
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1862 std::string actualMD5; |
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|
1863 Toolbox::ComputeMD5(actualMD5, data); |
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1864 |
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1865 if (actualMD5 == info.GetCompressedMD5()) |
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1866 { |
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|
1867 // The compressed data is OK. If a compression algorithm was |
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1868 // applied to it, now check the MD5 of the uncompressed data. |
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1869 if (info.GetCompressionType() == CompressionType_None) |
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|
1870 { |
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1871 ok = true; |
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1872 } |
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|
1873 else |
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1874 { |
|
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1875 context.ReadAttachment(data, publicId, StringToContentType(name), true); |
|
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|
1876 Toolbox::ComputeMD5(actualMD5, data); |
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|
1877 ok = (actualMD5 == info.GetUncompressedMD5()); |
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1878 } |
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|
1879 } |
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|
1880 |
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1881 if (ok) |
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|
1882 { |
|
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1883 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has the right MD5"; |
|
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1884 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
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|
1885 } |
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|
1886 else |
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diff
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|
1887 { |
|
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1888 CLOG(INFO, HTTP) << "The attachment " << name << " of resource " << publicId << " has bad MD5!"; |
|
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1889 } |
|
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|
1890 } |
|
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|
1891 |
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|
1892 |
| 974 | 1893 static void UploadAttachment(RestApiPutCall& call) |
|
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1894 { |
| 4414 | 1895 if (call.IsDocumentation()) |
| 1896 { | |
| 1897 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1898 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1899 call.GetDocumentation() | |
| 1900 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1901 .SetSummary("Set attachment") | |
| 1902 .SetDescription("Attach a file to the given DICOM " + r + | |
| 1903 ". This call will fail if trying to modify a system attachment (i.e. whose index is < 1024).") | |
| 1904 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 1905 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") | |
| 1906 .AddRequestType(MimeType_Binary, "Binary data containing the attachment") | |
| 1907 .AddAnswerType(MimeType_Json, "Empty JSON object in the case of a success"); | |
| 1908 return; | |
| 1909 } | |
| 1910 | |
|
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|
1911 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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|
1912 CheckValidResourceType(call); |
|
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|
1913 |
|
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|
1914 std::string publicId = call.GetUriComponent("id", ""); |
|
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|
1915 std::string name = call.GetUriComponent("name", ""); |
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|
1916 |
|
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|
1917 FileContentType contentType = StringToContentType(name); |
|
1773
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New UpdatedAttachment and UpdatedMetadata events in plugins
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1918 if (IsUserContentType(contentType) && // It is forbidden to modify internal attachments |
|
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refactoring: IHttpHandler does not use std::string to hold the request body
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1437
diff
changeset
|
1919 context.AddAttachment(publicId, StringToContentType(name), call.GetBodyData(), call.GetBodySize())) |
|
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|
1920 { |
|
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|
1921 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
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1922 } |
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1923 else |
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1924 { |
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1925 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
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|
1926 } |
|
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|
1927 } |
|
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|
1928 |
|
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|
1929 |
| 974 | 1930 static void DeleteAttachment(RestApiDeleteCall& call) |
|
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|
1931 { |
| 4413 | 1932 if (call.IsDocumentation()) |
| 1933 { | |
| 1934 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1935 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1936 call.GetDocumentation() | |
| 1937 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1938 .SetSummary("Delete attachment") | |
| 4414 | 1939 .SetDescription("Delete an attachment associated with the given DICOM " + r + |
| 1940 ". This call will fail if trying to delete a system attachment (i.e. whose index is < 1024).") | |
| 4413 | 1941 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
| 4414 | 1942 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 1943 return; |
| 1944 } | |
| 1945 | |
|
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|
1946 CheckValidResourceType(call); |
|
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|
1947 |
|
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|
1948 std::string publicId = call.GetUriComponent("id", ""); |
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|
1949 std::string name = call.GetUriComponent("name", ""); |
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|
1950 FileContentType contentType = StringToContentType(name); |
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|
1951 |
|
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|
1952 bool allowed; |
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1953 if (IsUserContentType(contentType)) |
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|
1954 { |
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1955 allowed = true; |
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1956 } |
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|
1957 else |
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|
1958 { |
|
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|
1959 OrthancConfiguration::ReaderLock lock; |
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|
1960 |
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|
1961 if (lock.GetConfiguration().GetBooleanParameter("StoreDicom", true) && |
|
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|
1962 contentType == FileContentType_DicomAsJson) |
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|
1963 { |
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|
1964 allowed = true; |
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|
1965 } |
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|
1966 else |
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|
1967 { |
|
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|
1968 // It is forbidden to delete internal attachments, except for |
|
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|
1969 // the "DICOM as JSON" summary as of Orthanc 1.2.0 (this summary |
|
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|
1970 // would be automatically reconstructed on the next GET call) |
|
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|
1971 allowed = false; |
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|
1972 } |
|
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|
1973 } |
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|
1974 |
|
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|
1975 if (allowed) |
|
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|
1976 { |
|
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|
1977 OrthancRestApi::GetIndex(call).DeleteAttachment(publicId, contentType); |
|
2908
9d277f8ad698
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2905
diff
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|
1978 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
751
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|
1979 } |
|
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|
1980 else |
|
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|
1981 { |
|
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|
1982 call.GetOutput().SignalError(HttpStatus_403_Forbidden); |
|
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|
1983 } |
|
751
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diff
changeset
|
1984 } |
|
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diff
changeset
|
1985 |
|
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parents:
diff
changeset
|
1986 |
|
1700
f5ddbd9239dd
New URIs for attachments: ".../compress", ".../uncompress" and ".../is-compressed"
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1556
diff
changeset
|
1987 template <enum CompressionType compression> |
|
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1988 static void ChangeAttachmentCompression(RestApiPostCall& call) |
|
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1989 { |
| 4413 | 1990 if (call.IsDocumentation()) |
| 1991 { | |
| 1992 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 1993 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 1994 call.GetDocumentation() | |
| 1995 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 1996 .SetSummary(compression == CompressionType_None ? "Uncompress attachment" : "Compress attachment") | |
| 1997 .SetDescription("Change the compression scheme that is used to store an attachment.") | |
| 1998 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 1999 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)"); |
| 4413 | 2000 return; |
| 2001 } | |
| 2002 | |
|
1700
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2003 CheckValidResourceType(call); |
|
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2004 |
|
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2005 std::string publicId = call.GetUriComponent("id", ""); |
|
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2006 std::string name = call.GetUriComponent("name", ""); |
|
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2007 FileContentType contentType = StringToContentType(name); |
|
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2008 |
|
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2009 OrthancRestApi::GetContext(call).ChangeAttachmentCompression(publicId, contentType, compression); |
|
2908
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2010 call.GetOutput().AnswerBuffer("{}", MimeType_Json); |
|
1700
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2011 } |
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2012 |
|
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2013 |
|
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2014 static void IsAttachmentCompressed(RestApiGetCall& call) |
|
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2015 { |
| 4413 | 2016 if (call.IsDocumentation()) |
| 2017 { | |
| 2018 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); | |
| 2019 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); | |
| 2020 call.GetDocumentation() | |
| 2021 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) | |
| 2022 .SetSummary("Is attachment compressed?") | |
| 2023 .SetDescription("Test whether the attachment has been stored as a compressed file on the disk.") | |
| 2024 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") | |
| 4414 | 2025 .SetUriArgument("name", "The name of the attachment, or its index (cf. `UserContentType` configuration option)") |
| 4413 | 2026 .AddAnswerType(MimeType_PlainText, "`0` if the attachment was stored uncompressed, `1` if it was compressed"); |
| 2027 return; | |
| 2028 } | |
| 2029 | |
|
1700
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|
2030 FileInfo info; |
|
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2031 if (GetAttachmentInfo(info, call)) |
|
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2032 { |
|
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|
2033 std::string answer = (info.GetCompressionType() == CompressionType_None) ? "0" : "1"; |
|
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2034 call.GetOutput().AnswerBuffer(answer, MimeType_PlainText); |
|
1700
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|
2035 } |
|
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|
2036 } |
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2037 |
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|
2038 |
| 782 | 2039 // Raw access to the DICOM tags of an instance ------------------------------ |
| 2040 | |
| 974 | 2041 static void GetRawContent(RestApiGetCall& call) |
| 782 | 2042 { |
|
4405
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|
2043 if (call.IsDocumentation()) |
|
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|
2044 { |
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|
2045 call.GetDocumentation() |
|
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2046 .SetTag("Instances") |
|
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|
2047 .SetSummary("Get raw tag") |
|
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2048 .SetDescription("Get the raw content of one DICOM tag in the hierarchy of DICOM dataset") |
|
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2049 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") |
|
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2050 .SetUriArgument("...", "Path to the DICOM tag. This is the interleaving of one DICOM tag, possibly followed " |
|
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2051 "by an index for sequences. Sequences are accessible as, for instance, `/0008-1140/1/0008-1150`") |
|
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2052 .AddAnswerType(MimeType_Binary, "The raw value of the tag of intereset " |
|
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2053 "(binary data, whose memory layout depends on the underlying transfer syntax), " |
|
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|
2054 "or JSON array containing the list of available tags if accessing a dataset"); |
|
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|
2055 return; |
|
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2056 } |
|
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|
2057 |
| 782 | 2058 std::string id = call.GetUriComponent("id", ""); |
| 2059 | |
| 2060 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); | |
| 2061 | |
| 2062 locker.GetDicom().SendPathValue(call.GetOutput(), call.GetTrailingUri()); | |
| 2063 } | |
| 2064 | |
|
751
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refactoring of OrthancRestApi
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2065 |
|
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2066 |
|
960
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|
2067 static bool ExtractSharedTags(Json::Value& shared, |
|
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2068 ServerContext& context, |
|
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|
2069 const std::string& publicId) |
|
958
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2070 { |
|
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|
2071 // Retrieve all the instances of this patient/study/series |
|
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|
2072 typedef std::list<std::string> Instances; |
|
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|
2073 Instances instances; |
|
959
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|
2074 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
958
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|
2075 |
|
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|
2076 // Loop over the instances |
|
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|
2077 bool isFirst = true; |
|
960
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|
2078 shared = Json::objectValue; |
|
958
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|
2079 |
|
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|
2080 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2081 it != instances.end(); ++it) |
|
958
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|
2082 { |
|
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|
2083 // Get the tags of the current instance, in the simplified format |
|
960
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|
2084 Json::Value tags; |
|
959
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|
2085 |
|
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|
2086 try |
|
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|
2087 { |
| 2124 | 2088 context.ReadDicomAsJson(tags, *it); |
|
959
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|
2089 } |
|
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|
2090 catch (OrthancException&) |
|
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|
2091 { |
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|
2092 // Race condition: This instance has been removed since |
|
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2093 // (*). Ignore this instance. |
|
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2094 continue; |
|
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2095 } |
|
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|
2096 |
|
960
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2097 if (tags.type() != Json::objectValue) |
|
958
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2098 { |
|
960
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|
2099 return false; // Error |
|
958
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2100 } |
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2101 |
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2102 // Only keep the tags that are mapped to a string |
|
960
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2103 Json::Value::Members members = tags.getMemberNames(); |
|
958
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2104 for (size_t i = 0; i < members.size(); i++) |
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2105 { |
|
960
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2106 const Json::Value& tag = tags[members[i]]; |
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2107 if (tag.type() != Json::objectValue || |
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2108 tag["Type"].type() != Json::stringValue || |
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|
2109 tag["Type"].asString() != "String") |
|
958
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2110 { |
|
960
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|
2111 tags.removeMember(members[i]); |
|
958
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2112 } |
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2113 } |
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2114 |
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2115 if (isFirst) |
|
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2116 { |
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2117 // This is the first instance, keep its tags as such |
|
960
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|
2118 shared = tags; |
|
958
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|
2119 isFirst = false; |
|
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2120 } |
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2121 else |
|
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|
2122 { |
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2123 // Loop over all the members of the shared tags extracted so |
|
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2124 // far. If the value of one of these tags does not match its |
|
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2125 // value in the current instance, remove it. |
|
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2126 members = shared.getMemberNames(); |
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2127 for (size_t i = 0; i < members.size(); i++) |
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2128 { |
|
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2129 if (!tags.isMember(members[i]) || |
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2130 tags[members[i]]["Value"].asString() != shared[members[i]]["Value"].asString()) |
|
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2131 { |
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2132 shared.removeMember(members[i]); |
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2133 } |
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2134 } |
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2135 } |
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2136 } |
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2137 |
|
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2138 return true; |
|
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2139 } |
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2140 |
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2141 |
| 974 | 2142 static void GetSharedTags(RestApiGetCall& call) |
|
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2143 { |
|
4416
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2144 if (call.IsDocumentation()) |
|
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2145 { |
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2146 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
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2147 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
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2148 call.GetDocumentation() |
|
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2149 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
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2150 .SetSummary("Get shared tags") |
|
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2151 .SetDescription("Extract the DICOM tags whose value is constant across all the child instances of " |
|
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2152 "the DICOM " + r + " whose Orthanc identifier is provided in the URL") |
|
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2153 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
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2154 .AddAnswerType(MimeType_Json, "JSON object containing the values of the DICOM tags") |
|
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2155 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/shared-tags", 5); |
|
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2156 return; |
|
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2157 } |
|
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2158 |
|
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2159 ServerContext& context = OrthancRestApi::GetContext(call); |
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2160 std::string publicId = call.GetUriComponent("id", ""); |
|
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2161 |
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2162 Json::Value sharedTags; |
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2163 if (ExtractSharedTags(sharedTags, context, publicId)) |
|
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2164 { |
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2165 // Success: Send the value of the shared tags |
|
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2166 AnswerDicomAsJson(call, sharedTags); |
|
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2167 } |
|
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|
2168 } |
|
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2169 |
|
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|
2170 |
|
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2171 static void GetModuleInternal(RestApiGetCall& call, |
|
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2172 ResourceType resourceType, |
|
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2173 DicomModule module) |
|
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2174 { |
|
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2175 if (!((resourceType == ResourceType_Patient && module == DicomModule_Patient) || |
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2176 (resourceType == ResourceType_Study && module == DicomModule_Patient) || |
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2177 (resourceType == ResourceType_Study && module == DicomModule_Study) || |
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2178 (resourceType == ResourceType_Series && module == DicomModule_Series) || |
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2179 (resourceType == ResourceType_Instance && module == DicomModule_Instance) || |
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|
2180 (resourceType == ResourceType_Instance && module == DicomModule_Image))) |
|
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2181 { |
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|
2182 throw OrthancException(ErrorCode_NotImplemented); |
|
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2183 } |
|
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2184 |
|
963
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2185 ServerContext& context = OrthancRestApi::GetContext(call); |
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2186 std::string publicId = call.GetUriComponent("id", ""); |
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2187 |
|
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2188 std::set<DicomTag> ignoreTagLength; |
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2189 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
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2190 |
|
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2191 typedef std::set<DicomTag> ModuleTags; |
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|
2192 ModuleTags moduleTags; |
| 1368 | 2193 DicomTag::AddTagsForModule(moduleTags, module); |
|
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2194 |
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2195 Json::Value tags; |
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2196 |
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2197 if (resourceType != ResourceType_Instance) |
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2198 { |
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2199 // Retrieve all the instances of this patient/study/series |
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2200 typedef std::list<std::string> Instances; |
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2201 Instances instances; |
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2202 context.GetIndex().GetChildInstances(instances, publicId); |
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2203 |
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2204 if (instances.empty()) |
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2205 { |
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2206 return; // Error: No instance (should never happen) |
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2207 } |
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2208 |
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2209 // Select one child instance |
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2210 publicId = instances.front(); |
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2211 } |
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2212 |
|
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2213 context.ReadDicomAsJson(tags, publicId, ignoreTagLength); |
|
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2214 |
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2215 // Filter the tags of the instance according to the module |
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2216 Json::Value result = Json::objectValue; |
| 1303 | 2217 for (ModuleTags::const_iterator tag = moduleTags.begin(); tag != moduleTags.end(); ++tag) |
|
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2218 { |
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2219 std::string s = tag->Format(); |
|
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2220 if (tags.isMember(s)) |
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2221 { |
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2222 result[s] = tags[s]; |
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2223 } |
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2224 } |
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2225 |
|
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2226 AnswerDicomAsJson(call, result); |
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2227 } |
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2228 |
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2229 |
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2230 |
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2231 template <enum ResourceType resourceType, |
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2232 enum DicomModule module> |
|
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2233 static void GetModule(RestApiGetCall& call) |
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2234 { |
| 4419 | 2235 if (call.IsDocumentation()) |
| 2236 { | |
| 2237 const std::string resource = GetResourceTypeText(resourceType, false /* plural */, false /* lower case */); | |
| 2238 std::string m; | |
| 2239 switch (module) | |
| 2240 { | |
| 2241 case DicomModule_Patient: | |
| 2242 m = "patient"; | |
| 2243 break; | |
| 2244 case DicomModule_Study: | |
| 2245 m = "study"; | |
| 2246 break; | |
| 2247 case DicomModule_Series: | |
| 2248 m = "series"; | |
| 2249 break; | |
| 2250 case DicomModule_Instance: | |
| 2251 m = "instance"; | |
| 2252 break; | |
| 2253 default: | |
| 2254 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 2255 } | |
| 2256 call.GetDocumentation() | |
| 2257 .SetTag(GetResourceTypeText(resourceType, true /* plural */, true /* upper case */)) | |
| 2258 .SetSummary("Get " + m + " module" + std::string(resource == m ? "" : " of " + resource)) | |
| 2259 .SetDescription("Get the " + m + " module of the DICOM " + resource + " whose Orthanc identifier is provided in the URL") | |
| 2260 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") | |
| 2261 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 2262 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) | |
| 2263 .AddAnswerType(MimeType_Json, "Information about the DICOM " + resource) | |
| 2264 .SetHttpGetSample(GetDocumentationSampleResource(resourceType) + "/" + (*call.GetFullUri().rbegin()), true); | |
| 2265 return; | |
| 2266 } | |
| 2267 | |
|
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2268 GetModuleInternal(call, resourceType, module); |
|
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2269 } |
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2270 |
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2271 |
| 1722 | 2272 namespace |
| 2273 { | |
| 2274 typedef std::list< std::pair<ResourceType, std::string> > LookupResults; | |
| 2275 } | |
| 2276 | |
| 2277 | |
| 2278 static void AccumulateLookupResults(LookupResults& result, | |
|
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2279 ServerIndex& index, |
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2280 const DicomTag& tag, |
|
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2281 const std::string& value, |
|
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2282 ResourceType level) |
|
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2283 { |
|
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|
2284 std::vector<std::string> tmp; |
|
1728
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|
2285 index.LookupIdentifierExact(tmp, level, tag, value); |
|
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2286 |
|
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2287 for (size_t i = 0; i < tmp.size(); i++) |
|
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2288 { |
|
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2289 result.push_back(std::make_pair(level, tmp[i])); |
|
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2290 } |
|
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2291 } |
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2292 |
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2293 |
|
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2294 static void Lookup(RestApiPostCall& call) |
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2295 { |
| 4422 | 2296 if (call.IsDocumentation()) |
| 2297 { | |
| 2298 call.GetDocumentation() | |
| 2299 .SetTag("System") | |
| 2300 .SetSummary("Look for DICOM identifiers") | |
| 2301 .SetDescription("This URI can be used to convert one DICOM identifier to a list of matching Orthanc resources") | |
| 2302 .AddRequestType(MimeType_PlainText, "The DICOM identifier of interest (i.e. the value of `PatientID`, " | |
| 2303 "`StudyInstanceUID`, `SeriesInstanceUID`, or `SOPInstanceUID`)") | |
| 2304 .AddAnswerType(MimeType_Json, "JSON array containing a list of matching Orthanc resources, each item in the " | |
| 2305 "list corresponding to a JSON object with the fields `Type`, `ID` and `Path` identifying one " | |
| 2306 "DICOM resource that is stored by Orthanc"); | |
| 2307 return; | |
| 2308 } | |
| 2309 | |
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2310 std::string tag; |
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2311 call.BodyToString(tag); |
|
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2312 |
| 1722 | 2313 LookupResults resources; |
|
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|
2314 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
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2315 AccumulateLookupResults(resources, index, DICOM_TAG_PATIENT_ID, tag, ResourceType_Patient); |
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2316 AccumulateLookupResults(resources, index, DICOM_TAG_STUDY_INSTANCE_UID, tag, ResourceType_Study); |
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2317 AccumulateLookupResults(resources, index, DICOM_TAG_SERIES_INSTANCE_UID, tag, ResourceType_Series); |
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2318 AccumulateLookupResults(resources, index, DICOM_TAG_SOP_INSTANCE_UID, tag, ResourceType_Instance); |
|
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2319 |
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2320 Json::Value result = Json::arrayValue; |
| 1722 | 2321 for (LookupResults::const_iterator |
|
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2322 it = resources.begin(); it != resources.end(); ++it) |
|
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2323 { |
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2324 ResourceType type = it->first; |
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2325 const std::string& id = it->second; |
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2326 |
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2327 Json::Value item = Json::objectValue; |
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2328 item["Type"] = EnumerationToString(type); |
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2329 item["ID"] = id; |
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2330 item["Path"] = GetBasePath(type, id); |
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2331 |
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2332 result.append(item); |
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2333 } |
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2334 |
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2335 call.GetOutput().AnswerJson(result); |
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2336 } |
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2337 |
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2338 |
|
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2339 namespace |
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2340 { |
|
3021
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2341 class FindVisitor : public ServerContext::ILookupVisitor |
|
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2342 { |
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2343 private: |
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2344 bool isComplete_; |
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2345 std::list<std::string> resources_; |
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2346 |
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2347 public: |
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2348 FindVisitor() : |
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2349 isComplete_(false) |
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2350 { |
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2351 } |
| 4205 | 2352 |
| 2353 virtual bool IsDicomAsJsonNeeded() const ORTHANC_OVERRIDE | |
|
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2354 { |
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2355 return false; // (*) |
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2356 } |
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2357 |
| 4205 | 2358 virtual void MarkAsComplete() ORTHANC_OVERRIDE |
|
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2359 { |
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2360 isComplete_ = true; // Unused information as of Orthanc 1.5.0 |
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2361 } |
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2362 |
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2363 virtual void Visit(const std::string& publicId, |
|
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2364 const std::string& instanceId /* unused */, |
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2365 const DicomMap& mainDicomTags /* unused */, |
| 4205 | 2366 const Json::Value* dicomAsJson /* unused (*) */) ORTHANC_OVERRIDE |
|
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2367 { |
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2368 resources_.push_back(publicId); |
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2369 } |
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2370 |
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2371 void Answer(RestApiOutput& output, |
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2372 ServerIndex& index, |
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2373 ResourceType level, |
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2374 bool expand) const |
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2375 { |
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2376 AnswerListOfResources(output, index, resources_, level, expand); |
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2377 } |
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2378 }; |
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2379 } |
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2380 |
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2381 |
| 1354 | 2382 static void Find(RestApiPostCall& call) |
| 2383 { | |
| 2998 | 2384 static const char* const KEY_CASE_SENSITIVE = "CaseSensitive"; |
| 2385 static const char* const KEY_EXPAND = "Expand"; | |
| 2386 static const char* const KEY_LEVEL = "Level"; | |
| 2387 static const char* const KEY_LIMIT = "Limit"; | |
| 2388 static const char* const KEY_QUERY = "Query"; | |
| 2389 static const char* const KEY_SINCE = "Since"; | |
| 2390 | |
| 4421 | 2391 if (call.IsDocumentation()) |
| 2392 { | |
| 2393 call.GetDocumentation() | |
| 2394 .SetTag("System") | |
| 2395 .SetSummary("Look for local resources") | |
| 2396 .SetDescription("This URI can be used to perform a search on the content of the local Orthanc server, " | |
| 2397 "in a way that is similar to querying remote DICOM modalities using C-FIND SCU: " | |
| 2398 "https://book.orthanc-server.com/users/rest.html#performing-finds-within-orthanc") | |
| 2399 .SetRequestField(KEY_CASE_SENSITIVE, RestApiCallDocumentation::Type_Boolean, | |
| 2400 "Enable case-sensitive search for PN value representations (defaults to configuration option `CaseSensitivePN`)", false) | |
| 2401 .SetRequestField(KEY_EXPAND, RestApiCallDocumentation::Type_Boolean, | |
| 2402 "Also retrieve the content of the matching resources, not only their Orthanc identifiers", false) | |
| 2403 .SetRequestField(KEY_LEVEL, RestApiCallDocumentation::Type_String, | |
| 2404 "Level of the query (`Patient`, `Study`, `Series` or `Instance`)", true) | |
| 2405 .SetRequestField(KEY_LIMIT, RestApiCallDocumentation::Type_Number, | |
| 2406 "Limit the number of reported resources", false) | |
| 2407 .SetRequestField(KEY_SINCE, RestApiCallDocumentation::Type_Number, | |
| 2408 "Show only the resources since the provided index (in conjunction with `Limit`)", false) | |
| 2409 .SetRequestField(KEY_QUERY, RestApiCallDocumentation::Type_JsonObject, | |
| 2410 "Associative array containing the filter on the values of the DICOM tags", true) | |
| 2411 .AddAnswerType(MimeType_Json, "JSON array containing either the Orthanc identifiers, or detailed information " | |
| 2412 "about the reported resources (if `Expand` argument is `true`)"); | |
| 2413 return; | |
| 2414 } | |
| 2415 | |
| 1358 | 2416 ServerContext& context = OrthancRestApi::GetContext(call); |
| 1354 | 2417 |
| 2418 Json::Value request; | |
|
3001
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diff
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|
2419 if (!call.ParseJsonRequest(request) || |
|
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diff
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|
2420 request.type() != Json::objectValue) |
|
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diff
changeset
|
2421 { |
|
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refactoring /tools/find using LookupResource::IVisitor
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diff
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|
2422 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
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diff
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|
2423 "The body must contain a JSON object"); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2424 } |
|
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diff
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|
2425 else if (!request.isMember(KEY_LEVEL) || |
|
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refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2426 request[KEY_LEVEL].type() != Json::stringValue) |
|
7695a9c81099
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diff
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|
2427 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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diff
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|
2428 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2429 "Field \"" + std::string(KEY_LEVEL) + "\" is missing, or should be a string"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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diff
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|
2430 } |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2431 else if (!request.isMember(KEY_QUERY) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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diff
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|
2432 request[KEY_QUERY].type() != Json::objectValue) |
|
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|
2433 { |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2434 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2435 "Field \"" + std::string(KEY_QUERY) + "\" is missing, or should be a JSON object"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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|
2436 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2437 else if (request.isMember(KEY_CASE_SENSITIVE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2438 request[KEY_CASE_SENSITIVE].type() != Json::booleanValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
2439 { |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2440 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
2441 "Field \"" + std::string(KEY_CASE_SENSITIVE) + "\" should be a Boolean"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2442 } |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2443 else if (request.isMember(KEY_LIMIT) && |
|
7695a9c81099
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2444 request[KEY_LIMIT].type() != Json::intValue) |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2445 { |
|
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refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2446 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2447 "Field \"" + std::string(KEY_LIMIT) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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|
2448 } |
|
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diff
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|
2449 else if (request.isMember(KEY_SINCE) && |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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|
2450 request[KEY_SINCE].type() != Json::intValue) |
|
7695a9c81099
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|
2451 { |
|
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diff
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|
2452 throw OrthancException(ErrorCode_BadRequest, |
|
7695a9c81099
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2453 "Field \"" + std::string(KEY_SINCE) + "\" should be an integer"); |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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|
2454 } |
|
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diff
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|
2455 else |
| 1354 | 2456 { |
| 2457 bool expand = false; | |
| 2998 | 2458 if (request.isMember(KEY_EXPAND)) |
| 1354 | 2459 { |
| 2998 | 2460 expand = request[KEY_EXPAND].asBool(); |
| 1354 | 2461 } |
| 2462 | |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
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1361
diff
changeset
|
2463 bool caseSensitive = false; |
| 2998 | 2464 if (request.isMember(KEY_CASE_SENSITIVE)) |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
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1361
diff
changeset
|
2465 { |
| 2998 | 2466 caseSensitive = request[KEY_CASE_SENSITIVE].asBool(); |
|
1374
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
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1361
diff
changeset
|
2467 } |
|
a1745d9be6e9
CaseSensitivePN configuration option
Sebastien Jodogne <s.jodogne@gmail.com>
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1361
diff
changeset
|
2468 |
| 1758 | 2469 size_t limit = 0; |
| 2998 | 2470 if (request.isMember(KEY_LIMIT)) |
| 1758 | 2471 { |
| 2998 | 2472 int tmp = request[KEY_LIMIT].asInt(); |
| 1847 | 2473 if (tmp < 0) |
| 1758 | 2474 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2475 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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2998
diff
changeset
|
2476 "Field \"" + std::string(KEY_LIMIT) + "\" should be a positive integer"); |
| 1758 | 2477 } |
| 1847 | 2478 |
| 2479 limit = static_cast<size_t>(tmp); | |
| 1758 | 2480 } |
| 2481 | |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2482 size_t since = 0; |
| 2998 | 2483 if (request.isMember(KEY_SINCE)) |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2484 { |
| 2998 | 2485 int tmp = request[KEY_SINCE].asInt(); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2486 if (tmp < 0) |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2487 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2488 throw OrthancException(ErrorCode_ParameterOutOfRange, |
|
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2489 "Field \"" + std::string(KEY_SINCE) + "\" should be a positive integer"); |
|
2304
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2281
diff
changeset
|
2490 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2491 |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2492 since = static_cast<size_t>(tmp); |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2493 } |
|
563bf878407a
Argument "Since" in URI "/tools/find" (related to issue 53)
Sebastien Jodogne <s.jodogne@gmail.com>
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2281
diff
changeset
|
2494 |
|
3033
5da6d1063d8f
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diff
changeset
|
2495 ResourceType level = StringToResourceType(request[KEY_LEVEL].asCString()); |
| 1360 | 2496 |
|
3033
5da6d1063d8f
effectively replacing LookupResource by DatabaseLookup in searches
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2497 DatabaseLookup query; |
| 1358 | 2498 |
| 2998 | 2499 Json::Value::Members members = request[KEY_QUERY].getMemberNames(); |
| 1354 | 2500 for (size_t i = 0; i < members.size(); i++) |
| 2501 { | |
| 2998 | 2502 if (request[KEY_QUERY][members[i]].type() != Json::stringValue) |
| 1354 | 2503 { |
|
3001
7695a9c81099
refactoring /tools/find using LookupResource::IVisitor
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|
2504 throw OrthancException(ErrorCode_BadRequest, |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2505 "Tag \"" + members[i] + "\" should be associated with a string"); |
| 1354 | 2506 } |
| 2507 | |
|
3163
cf91b6f22278
Fix issue #90 (C-Find shall match missing tags to null/empty string)
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3094
diff
changeset
|
2508 const std::string value = request[KEY_QUERY][members[i]].asString(); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
2509 |
|
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changeset
|
2510 if (!value.empty()) |
|
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changeset
|
2511 { |
|
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diff
changeset
|
2512 // An empty string corresponds to an universal constraint, |
|
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diff
changeset
|
2513 // so we ignore it. This mimics the behavior of class |
|
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diff
changeset
|
2514 // "OrthancFindRequestHandler" |
|
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changeset
|
2515 query.AddRestConstraint(FromDcmtkBridge::ParseTag(members[i]), |
|
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changeset
|
2516 value, caseSensitive, true); |
|
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|
2517 } |
|
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94ffb597d297
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diff
changeset
|
2518 } |
| 2876 | 2519 |
|
3001
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changeset
|
2520 FindVisitor visitor; |
|
3033
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diff
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|
2521 context.Apply(visitor, query, level, since, limit); |
|
5da6d1063d8f
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changeset
|
2522 visitor.Answer(call.GetOutput(), context.GetIndex(), level, expand); |
| 1354 | 2523 } |
| 2524 } | |
| 2525 | |
| 2526 | |
|
1140
94c5f6623b3a
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changeset
|
2527 template <enum ResourceType start, |
|
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|
2528 enum ResourceType end> |
|
94c5f6623b3a
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diff
changeset
|
2529 static void GetChildResources(RestApiGetCall& call) |
|
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|
2530 { |
| 4415 | 2531 if (call.IsDocumentation()) |
| 2532 { | |
| 2533 const std::string children = GetResourceTypeText(end, true /* plural */, false /* lower case */); | |
| 2534 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 2535 call.GetDocumentation() | |
| 2536 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 2537 .SetSummary("Get child " + children) | |
| 2538 .SetDescription("Get detailed information about the child " + children + " of the DICOM " + | |
|
4416
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2539 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 2540 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 2541 .AddAnswerType(MimeType_Json, "JSON array containing information about the child DICOM " + children) | |
| 2542 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + children, 5); | |
| 2543 return; | |
| 2544 } | |
| 2545 | |
|
1140
94c5f6623b3a
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changeset
|
2546 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
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2547 |
|
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changeset
|
2548 std::list<std::string> a, b, c; |
|
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diff
changeset
|
2549 a.push_back(call.GetUriComponent("id", "")); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
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|
2550 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
2551 ResourceType type = start; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
2552 while (type != end) |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2553 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
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|
2554 b.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
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|
2555 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
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|
2556 for (std::list<std::string>::const_iterator |
| 1303 | 2557 it = a.begin(); it != a.end(); ++it) |
|
1140
94c5f6623b3a
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diff
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|
2558 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2559 index.GetChildren(c, *it); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2560 b.splice(b.begin(), c); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
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|
2561 } |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
2562 |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
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|
2563 type = GetChildResourceType(type); |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
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diff
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|
2564 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
2565 a.clear(); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2566 a.splice(a.begin(), b); |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2567 } |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2568 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2569 Json::Value result = Json::arrayValue; |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2570 |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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1139
diff
changeset
|
2571 for (std::list<std::string>::const_iterator |
| 1303 | 2572 it = a.begin(); it != a.end(); ++it) |
|
1140
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diff
changeset
|
2573 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2574 Json::Value item; |
|
94c5f6623b3a
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diff
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|
2575 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2576 if (OrthancRestApi::GetIndex(call).LookupResource(item, *it, end)) |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2577 { |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2578 result.append(item); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2579 } |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2580 } |
|
94c5f6623b3a
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diff
changeset
|
2581 |
|
94c5f6623b3a
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diff
changeset
|
2582 call.GetOutput().AnswerJson(result); |
|
94c5f6623b3a
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2583 } |
|
94c5f6623b3a
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diff
changeset
|
2584 |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2585 |
|
1166
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1146
diff
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|
2586 static void GetChildInstancesTags(RestApiGetCall& call) |
|
a921e3b5e763
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2587 { |
|
4416
0b27841950d5
openapi about creation of zip/media archives
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4415
diff
changeset
|
2588 if (call.IsDocumentation()) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
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4415
diff
changeset
|
2589 { |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2590 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str()); |
|
0b27841950d5
openapi about creation of zip/media archives
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4415
diff
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|
2591 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */); |
|
0b27841950d5
openapi about creation of zip/media archives
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diff
changeset
|
2592 call.GetDocumentation() |
|
0b27841950d5
openapi about creation of zip/media archives
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4415
diff
changeset
|
2593 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */)) |
|
0b27841950d5
openapi about creation of zip/media archives
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2594 .SetSummary("Get tags of instances") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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4415
diff
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|
2595 .SetDescription("Get the tags of all the child instances of the DICOM " + r + |
|
0b27841950d5
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diff
changeset
|
2596 " whose Orthanc identifier is provided in the URL") |
|
0b27841950d5
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diff
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|
2597 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest") |
|
0b27841950d5
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diff
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|
2598 .SetHttpGetArgument("ignore-length", RestApiCallDocumentation::Type_JsonListOfStrings, |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2599 "Also include the DICOM tags that are provided in this list, even if their associated value is long", false) |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2600 .AddAnswerType(MimeType_Json, "JSON object associating the Orthanc identifiers of the instances, with the values of their DICOM tags") |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2601 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(t) + "/instances-tags", 5); |
|
0b27841950d5
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2602 return; |
|
0b27841950d5
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diff
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|
2603 } |
|
0b27841950d5
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diff
changeset
|
2604 |
|
1166
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|
2605 ServerContext& context = OrthancRestApi::GetContext(call); |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2606 std::string publicId = call.GetUriComponent("id", ""); |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
2607 DicomToJsonFormat format = GetDicomFormat(call); |
|
1166
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|
2608 |
|
2409
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
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2408
diff
changeset
|
2609 std::set<DicomTag> ignoreTagLength; |
|
e4045b3c9772
ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2408
diff
changeset
|
2610 ParseSetOfTags(ignoreTagLength, call, "ignore-length"); |
|
e4045b3c9772
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diff
changeset
|
2611 |
|
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|
2612 // Retrieve all the instances of this patient/study/series |
|
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|
2613 typedef std::list<std::string> Instances; |
|
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|
2614 Instances instances; |
|
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|
2615 |
|
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diff
changeset
|
2616 context.GetIndex().GetChildInstances(instances, publicId); // (*) |
|
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|
2617 |
|
1201
09aa7c126be9
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1172
diff
changeset
|
2618 Json::Value result = Json::objectValue; |
|
1166
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|
2619 |
|
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changeset
|
2620 for (Instances::const_iterator it = instances.begin(); |
| 1303 | 2621 it != instances.end(); ++it) |
|
1166
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|
2622 { |
|
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|
2623 Json::Value full; |
|
2409
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
2624 context.ReadDicomAsJson(full, *it, ignoreTagLength); |
|
1166
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|
2625 |
|
2622
3603a2e14592
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diff
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|
2626 if (format != DicomToJsonFormat_Full) |
|
1166
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|
2627 { |
|
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changeset
|
2628 Json::Value simplified; |
|
4055
9214e3a7b0a2
moving FromDcmtkTests.cpp from OrthancServer to OrthancFramework
Sebastien Jodogne <s.jodogne@gmail.com>
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4045
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changeset
|
2629 Toolbox::SimplifyDicomAsJson(simplified, full, format); |
|
1201
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|
2630 result[*it] = simplified; |
|
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2631 } |
|
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|
2632 else |
|
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|
2633 { |
|
1201
09aa7c126be9
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changeset
|
2634 result[*it] = full; |
|
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|
2635 } |
|
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|
2636 } |
|
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changeset
|
2637 |
|
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|
2638 call.GetOutput().AnswerJson(result); |
|
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changeset
|
2639 } |
|
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|
2640 |
|
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changeset
|
2641 |
|
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changeset
|
2642 |
|
1281
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changeset
|
2643 template <enum ResourceType start, |
|
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|
2644 enum ResourceType end> |
|
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changeset
|
2645 static void GetParentResource(RestApiGetCall& call) |
|
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|
2646 { |
|
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diff
changeset
|
2647 assert(start > end); |
|
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diff
changeset
|
2648 |
| 4415 | 2649 if (call.IsDocumentation()) |
| 2650 { | |
| 2651 const std::string parent = GetResourceTypeText(end, false /* plural */, false /* lower case */); | |
| 2652 const std::string resource = GetResourceTypeText(start, false /* plural */, false /* lower case */); | |
| 2653 call.GetDocumentation() | |
| 2654 .SetTag(GetResourceTypeText(start, true /* plural */, true /* upper case */)) | |
| 2655 .SetSummary("Get parent " + parent) | |
| 2656 .SetDescription("Get detailed information about the parent " + parent + " of the DICOM " + | |
|
4416
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|
2657 resource + " whose Orthanc identifier is provided in the URL") |
| 4415 | 2658 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest") |
| 2659 .AddAnswerType(MimeType_Json, "Information about the parent DICOM " + parent) | |
| 2660 .SetTruncatedJsonHttpGetSample(GetDocumentationSampleResource(start) + "/" + parent, 10); | |
| 2661 return; | |
| 2662 } | |
| 2663 | |
|
1281
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diff
changeset
|
2664 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2665 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2666 std::string current = call.GetUriComponent("id", ""); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2667 ResourceType currentType = start; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2668 while (currentType > end) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2669 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2670 std::string parent; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2671 if (!index.LookupParent(parent, current)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2672 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2673 // Error that could happen if the resource gets deleted by |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2674 // another concurrent call |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2675 return; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2676 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2677 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2678 current = parent; |
|
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1509
diff
changeset
|
2679 currentType = GetParentResourceType(currentType); |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2680 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2681 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2682 assert(currentType == end); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2683 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2684 Json::Value result; |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2685 if (index.LookupResource(result, current, end)) |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2686 { |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2687 call.GetOutput().AnswerJson(result); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2688 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2689 } |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2690 |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2691 |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2692 static void ExtractPdf(RestApiGetCall& call) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2693 { |
| 4407 | 2694 if (call.IsDocumentation()) |
| 2695 { | |
| 2696 call.GetDocumentation() | |
| 2697 .SetTag("Instances") | |
| 2698 .SetSummary("Get embedded PDF") | |
| 2699 .SetDescription("Get the PDF file that is embedded in one DICOM instance. " | |
| 2700 "If the DICOM instance doesn't contain the `EncapsulatedDocument` tag or if the " | |
| 2701 "`MIMETypeOfEncapsulatedDocument` tag doesn't correspond to the PDF type, a `404` HTTP error is raised.") | |
| 2702 .SetUriArgument("id", "Orthanc identifier of the instance interest") | |
| 2703 .AddAnswerType(MimeType_Pdf, "PDF file"); | |
| 2704 return; | |
| 2705 } | |
| 2706 | |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2707 const std::string id = call.GetUriComponent("id", ""); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2708 std::string pdf; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2709 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2710 |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2711 if (locker.GetDicom().ExtractPdf(pdf)) |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2712 { |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2713 call.GetOutput().AnswerBuffer(pdf, MimeType_Pdf); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2714 return; |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2715 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2716 } |
|
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2717 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2718 |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2719 static void OrderSlices(RestApiGetCall& call) |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2720 { |
| 4421 | 2721 if (call.IsDocumentation()) |
| 2722 { | |
| 2723 call.GetDocumentation() | |
| 2724 .SetDeprecated() | |
| 2725 .SetTag("Series") | |
| 2726 .SetSummary("Order the slices") | |
| 2727 .SetDescription("Sort the instances and frames (slices) of the DICOM series whose Orthanc identifier is provided in the URL. " | |
| 2728 "This URI is essentially used by the Orthanc Web viewer and by the Osimis Web viewer.") | |
| 2729 .SetUriArgument("id", "Orthanc identifier of the series of interest") | |
| 2730 .SetAnswerField("Dicom", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 2731 "Ordered list of paths to DICOM instances") | |
| 2732 .SetAnswerField("Slices", RestApiCallDocumentation::Type_JsonListOfStrings, | |
| 2733 "Ordered list of paths to frames. It is recommended to use this field, as it is also valid " | |
| 2734 "in the case of multiframe images.") | |
| 2735 .SetAnswerField("SlicesShort", RestApiCallDocumentation::Type_JsonListOfObjects, | |
| 2736 "Same information as the `Slices` field, but in a compact form") | |
| 2737 .SetAnswerField("Type", RestApiCallDocumentation::Type_String, | |
| 2738 "Can be `Volume` (for 3D volumes) or `Sequence` (notably for cine images)") | |
| 2739 .SetTruncatedJsonHttpGetSample("https://demo.orthanc-server.com/series/1e2c125c-411b8e86-3f4fe68e-a7584dd3-c6da78f0/ordered-slices", 10); | |
| 2740 return; | |
| 2741 } | |
| 2742 | |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2743 const std::string id = call.GetUriComponent("id", ""); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2744 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2745 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2746 SliceOrdering ordering(index, id); |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2747 |
|
1703
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2748 Json::Value result; |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2749 ordering.Format(result); |
|
b80e76dd1d56
ordered-slices continued
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1702
diff
changeset
|
2750 call.GetOutput().AnswerJson(result); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2751 } |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2752 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2753 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2754 static void GetInstanceHeader(RestApiGetCall& call) |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2755 { |
| 4404 | 2756 if (call.IsDocumentation()) |
| 2757 { | |
| 2758 call.GetDocumentation() | |
| 2759 .SetTag("Instances") | |
| 2760 .SetSummary("Get DICOM meta-header") | |
| 2761 .SetDescription("Get the DICOM tags in the meta-header of the DICOM instance. By default, the `full` format is used, which " | |
| 2762 "combines hexadecimal tags with human-readable description.") | |
| 2763 .SetUriArgument("id", "Orthanc identifier of the DICOM instance of interest") | |
| 2764 .SetHttpGetArgument("simplify", RestApiCallDocumentation::Type_String, | |
| 2765 "If present, report the DICOM tags in human-readable format", false) | |
| 2766 .SetHttpGetArgument("short", RestApiCallDocumentation::Type_String, | |
| 2767 "If present, report the DICOM tags indexed in hexadecimal format", false) | |
| 2768 .AddAnswerType(MimeType_Json, "JSON object containing the DICOM tags and their associated value") | |
| 2769 .SetHttpGetSample("https://demo.orthanc-server.com/instances/7c92ce8e-bbf67ed2-ffa3b8c1-a3b35d94-7ff3ae26/header", true); | |
| 2770 return; | |
| 2771 } | |
| 2772 | |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2773 ServerContext& context = OrthancRestApi::GetContext(call); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2774 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2775 std::string publicId = call.GetUriComponent("id", ""); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2776 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2777 std::string dicomContent; |
| 2124 | 2778 context.ReadDicom(dicomContent, publicId); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2779 |
|
2007
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2780 // TODO Consider using "DicomMap::ParseDicomMetaInformation()" to |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2781 // speed up things here |
|
655489d9165d
DicomMap::ParseDicomMetaInformation()
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2003
diff
changeset
|
2782 |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2783 ParsedDicomFile dicom(dicomContent); |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2784 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2785 Json::Value header; |
|
4140
0ddc5297a8ab
centralization of default parameters for JSON/DicomMap conversions from DCMTK
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4139
diff
changeset
|
2786 OrthancConfiguration::DefaultDicomHeaderToJson(header, dicom); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2787 |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2788 AnswerDicomAsJson(call, header); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2789 } |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2790 |
|
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2791 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2792 static void InvalidateTags(RestApiPostCall& call) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2793 { |
| 4420 | 2794 if (call.IsDocumentation()) |
| 2795 { | |
| 2796 call.GetDocumentation() | |
| 2797 .SetTag("System") | |
| 2798 .SetSummary("Invalidate DICOM-as-JSON summaries") | |
| 2799 .SetDescription("Remove all the attachments of the type \"DICOM-as-JSON\" that are associated will all the " | |
| 2800 "DICOM instances stored in Orthanc. These summaries will be automatically re-created on the next access. " | |
| 2801 "This is notably useful after changes to the `Dictionary` configuration option. " | |
| 2802 "https://book.orthanc-server.com/faq/orthanc-storage.html#storage-area"); | |
| 2803 return; | |
| 2804 } | |
| 2805 | |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2806 ServerIndex& index = OrthancRestApi::GetIndex(call); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2807 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2808 // Loop over the instances, grouping them by parent studies so as |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2809 // to avoid large memory consumption |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2810 std::list<std::string> studies; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2811 index.GetAllUuids(studies, ResourceType_Study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2812 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2813 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2814 study = studies.begin(); study != studies.end(); ++study) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2815 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2816 std::list<std::string> instances; |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2817 index.GetChildInstances(instances, *study); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2818 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2819 for (std::list<std::string>::const_iterator |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2820 instance = instances.begin(); instance != instances.end(); ++instance) |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2821 { |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2822 index.DeleteAttachment(*instance, FileContentType_DicomAsJson); |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2823 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2824 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2825 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2826 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2827 } |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2828 |
|
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2829 |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2830 template <enum ResourceType type> |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2831 static void ReconstructResource(RestApiPostCall& call) |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2832 { |
| 4420 | 2833 if (call.IsDocumentation()) |
| 2834 { | |
| 2835 const std::string resource = GetResourceTypeText(type, false /* plural */, false /* lower case */); | |
| 2836 call.GetDocumentation() | |
| 2837 .SetTag(GetResourceTypeText(type, true /* plural */, true /* upper case */)) | |
| 2838 .SetSummary("Reconstruct tags of " + resource) | |
| 2839 .SetDescription("Reconstruct the main DICOM tags of the " + resource + " whose Orthanc identifier is provided " | |
| 2840 "in the URL. This is useful if child studies/series/instances have inconsistent values for " | |
| 2841 "higher-level tags, in order to force Orthanc to use the value from the resource of interest. " | |
| 2842 "Beware that this is a time-consuming operation, as all the children DICOM instances will be " | |
| 2843 "parsed again, and the Orthanc index will be updated accordingly.") | |
| 2844 .SetUriArgument("id", "Orthanc identifier of the " + resource + " of interest"); | |
| 2845 return; | |
| 2846 } | |
| 2847 | |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2848 ServerContext& context = OrthancRestApi::GetContext(call); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2849 ServerToolbox::ReconstructResource(context, call.GetUriComponent("id", "")); |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2850 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2851 } |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2852 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2853 |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2854 static void ReconstructAllResources(RestApiPostCall& call) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2855 { |
| 4420 | 2856 if (call.IsDocumentation()) |
| 2857 { | |
| 2858 call.GetDocumentation() | |
| 2859 .SetTag("System") | |
| 2860 .SetSummary("Reconstruct all the index") | |
| 2861 .SetDescription("Reconstruct the index of all the tags of all the DICOM instances that are stored in Orthanc. " | |
| 2862 "This is notably useful after the deletion of resources whose children resources have inconsistent " | |
| 2863 "values with their sibling resources. Beware that this is a highly time-consuming operation, " | |
| 2864 "as all the DICOM instances will be parsed again, and as all the Orthanc index will be regenerated."); | |
| 2865 return; | |
| 2866 } | |
| 2867 | |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2868 ServerContext& context = OrthancRestApi::GetContext(call); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2869 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2870 std::list<std::string> studies; |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2871 context.GetIndex().GetAllUuids(studies, ResourceType_Study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2872 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2873 for (std::list<std::string>::const_iterator |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2874 study = studies.begin(); study != studies.end(); ++study) |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2875 { |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2876 ServerToolbox::ReconstructResource(context, *study); |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2877 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2878 |
|
2908
9d277f8ad698
new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2905
diff
changeset
|
2879 call.GetOutput().AnswerBuffer("", MimeType_PlainText); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2880 } |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2881 |
|
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2882 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2883 void OrthancRestApi::RegisterResources() |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2884 { |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2885 Register("/instances", ListResources<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2886 Register("/patients", ListResources<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2887 Register("/series", ListResources<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2888 Register("/studies", ListResources<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2889 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2890 Register("/instances/{id}", DeleteSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2891 Register("/instances/{id}", GetSingleResource<ResourceType_Instance>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2892 Register("/patients/{id}", DeleteSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2893 Register("/patients/{id}", GetSingleResource<ResourceType_Patient>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2894 Register("/series/{id}", DeleteSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2895 Register("/series/{id}", GetSingleResource<ResourceType_Series>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2896 Register("/studies/{id}", DeleteSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2897 Register("/studies/{id}", GetSingleResource<ResourceType_Study>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2898 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2899 Register("/instances/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2900 Register("/patients/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2901 Register("/studies/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2902 Register("/series/{id}/statistics", GetResourceStatistics); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2903 |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2904 Register("/patients/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2905 Register("/series/{id}/shared-tags", GetSharedTags); |
|
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2906 Register("/studies/{id}/shared-tags", GetSharedTags); |
|
958
1fbe89dc18b5
extraction of the shared tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
874
diff
changeset
|
2907 |
|
1276
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2908 Register("/instances/{id}/module", GetModule<ResourceType_Instance, DicomModule_Instance>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2909 Register("/patients/{id}/module", GetModule<ResourceType_Patient, DicomModule_Patient>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2910 Register("/series/{id}/module", GetModule<ResourceType_Series, DicomModule_Series>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2911 Register("/studies/{id}/module", GetModule<ResourceType_Study, DicomModule_Study>); |
|
6164f7200c43
refactoring modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1201
diff
changeset
|
2912 Register("/studies/{id}/module-patient", GetModule<ResourceType_Study, DicomModule_Patient>); |
|
963
81134ea872ff
retrieve values of modules
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
960
diff
changeset
|
2913 |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2914 Register("/instances/{id}/file", GetInstanceFile); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2915 Register("/instances/{id}/export", ExportInstanceFile); |
|
964
cc7a4ae474c1
simplify has a GET argument
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
963
diff
changeset
|
2916 Register("/instances/{id}/tags", GetInstanceTagsBis); |
|
2622
3603a2e14592
New option "?short" to list DICOM tags using their hexadecimal ID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2447
diff
changeset
|
2917 Register("/instances/{id}/simplified-tags", GetInstanceTags<DicomToJsonFormat_Human>); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2918 Register("/instances/{id}/frames", ListFrames); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2919 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2920 Register("/instances/{id}/frames/{frame}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2921 Register("/instances/{id}/frames/{frame}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2922 Register("/instances/{id}/frames/{frame}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2923 Register("/instances/{id}/frames/{frame}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2924 Register("/instances/{id}/frames/{frame}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2925 Register("/instances/{id}/frames/{frame}/matlab", GetMatlabImage); |
|
2408
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2926 Register("/instances/{id}/frames/{frame}/raw", GetRawFrame<false>); |
|
26a0cc24d48d
New URI: "/instances/.../frames/.../raw.gz" to compress raw frames using gzip
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2382
diff
changeset
|
2927 Register("/instances/{id}/frames/{frame}/raw.gz", GetRawFrame<true>); |
|
1556
b8dc2f855a83
Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1555
diff
changeset
|
2928 Register("/instances/{id}/pdf", ExtractPdf); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2929 Register("/instances/{id}/preview", GetImage<ImageExtractionMode_Preview>); |
|
3683
12253ddefe5a
skeleton for new route: /instances/{id}/rendered
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3640
diff
changeset
|
2930 Register("/instances/{id}/rendered", GetRenderedFrame); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2931 Register("/instances/{id}/image-uint8", GetImage<ImageExtractionMode_UInt8>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2932 Register("/instances/{id}/image-uint16", GetImage<ImageExtractionMode_UInt16>); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2933 Register("/instances/{id}/image-int16", GetImage<ImageExtractionMode_Int16>); |
|
874
87791ebc1f50
download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
831
diff
changeset
|
2934 Register("/instances/{id}/matlab", GetMatlabImage); |
|
1831
3ae2ff249675
"/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1826
diff
changeset
|
2935 Register("/instances/{id}/header", GetInstanceHeader); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2936 |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2937 Register("/patients/{id}/protected", IsProtectedPatient); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2938 Register("/patients/{id}/protected", SetPatientProtection); |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2939 |
| 4409 | 2940 std::vector<std::string> resourceTypes; |
| 2941 resourceTypes.push_back("patients"); | |
| 2942 resourceTypes.push_back("studies"); | |
| 2943 resourceTypes.push_back("series"); | |
| 2944 resourceTypes.push_back("instances"); | |
| 2945 | |
| 2946 for (size_t i = 0; i < resourceTypes.size(); i++) | |
| 2947 { | |
| 2948 Register("/" + resourceTypes[i] + "/{id}/metadata", ListMetadata); | |
| 2949 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", DeleteMetadata); | |
| 2950 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", GetMetadata); | |
| 2951 Register("/" + resourceTypes[i] + "/{id}/metadata/{name}", SetMetadata); | |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
2952 |
| 4409 | 2953 Register("/" + resourceTypes[i] + "/{id}/attachments", ListAttachments); |
| 2954 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", DeleteAttachment); | |
| 2955 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", GetAttachmentOperations); | |
| 2956 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}", UploadAttachment); | |
| 2957 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compress", ChangeAttachmentCompression<CompressionType_ZlibWithSize>); | |
| 2958 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-data", GetAttachmentData<0>); | |
| 2959 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-md5", GetAttachmentCompressedMD5); | |
| 2960 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/compressed-size", GetAttachmentCompressedSize); | |
| 2961 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/data", GetAttachmentData<1>); | |
| 2962 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/is-compressed", IsAttachmentCompressed); | |
| 2963 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/md5", GetAttachmentMD5); | |
| 2964 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/size", GetAttachmentSize); | |
| 2965 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/uncompress", ChangeAttachmentCompression<CompressionType_None>); | |
| 2966 Register("/" + resourceTypes[i] + "/{id}/attachments/{name}/verify-md5", VerifyAttachment); | |
| 2967 } | |
| 782 | 2968 |
|
2129
0c09d1af22f3
"/tools/invalidate-tags" to invalidate the JSON summary of all the DICOM files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2128
diff
changeset
|
2969 Register("/tools/invalidate-tags", InvalidateTags); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
2970 Register("/tools/lookup", Lookup); |
| 1354 | 2971 Register("/tools/find", Find); |
|
1139
f167b672db94
/tools/lookup URI to map DICOM UIDs to Orthanc identifiers
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1054
diff
changeset
|
2972 |
|
1140
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2973 Register("/patients/{id}/studies", GetChildResources<ResourceType_Patient, ResourceType_Study>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2974 Register("/patients/{id}/series", GetChildResources<ResourceType_Patient, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2975 Register("/patients/{id}/instances", GetChildResources<ResourceType_Patient, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2976 Register("/studies/{id}/series", GetChildResources<ResourceType_Study, ResourceType_Series>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2977 Register("/studies/{id}/instances", GetChildResources<ResourceType_Study, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2978 Register("/series/{id}/instances", GetChildResources<ResourceType_Series, ResourceType_Instance>); |
|
94c5f6623b3a
URIs to get all the children of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
2979 |
|
1281
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2980 Register("/studies/{id}/patient", GetParentResource<ResourceType_Study, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2981 Register("/series/{id}/patient", GetParentResource<ResourceType_Series, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2982 Register("/series/{id}/study", GetParentResource<ResourceType_Series, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2983 Register("/instances/{id}/patient", GetParentResource<ResourceType_Instance, ResourceType_Patient>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2984 Register("/instances/{id}/study", GetParentResource<ResourceType_Instance, ResourceType_Study>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2985 Register("/instances/{id}/series", GetParentResource<ResourceType_Instance, ResourceType_Series>); |
|
8dac11c78d71
URIs to get all the parents of a given resource in a single REST call
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1276
diff
changeset
|
2986 |
|
1166
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2987 Register("/patients/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2988 Register("/studies/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2989 Register("/series/{id}/instances-tags", GetChildInstancesTags); |
|
a921e3b5e763
bulk tags retrieval
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1146
diff
changeset
|
2990 |
| 782 | 2991 Register("/instances/{id}/content/*", GetRawContent); |
|
1702
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2992 |
|
9980875edc7c
started work on SliceOrdering
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1701
diff
changeset
|
2993 Register("/series/{id}/ordered-slices", OrderSlices); |
|
2209
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2994 |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2995 Register("/patients/{id}/reconstruct", ReconstructResource<ResourceType_Patient>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2996 Register("/studies/{id}/reconstruct", ReconstructResource<ResourceType_Study>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2997 Register("/series/{id}/reconstruct", ReconstructResource<ResourceType_Series>); |
|
e3fd5bc429a2
URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2140
diff
changeset
|
2998 Register("/instances/{id}/reconstruct", ReconstructResource<ResourceType_Instance>); |
|
2804
d88970f1ffbf
fix ordering of non-parallel slices + /tools/reconstruct
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2780
diff
changeset
|
2999 Register("/tools/reconstruct", ReconstructAllResources); |
|
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3000 } |
|
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
3001 } |