Mercurial > hg > orthanc
annotate OrthancServer/OrthancRestApi/OrthancRestAnonymizeModify.cpp @ 2857:482631e4e290
added mime type for WASM in WebSkeleton
author | am@osimis.io |
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date | Wed, 03 Oct 2018 16:13:19 +0200 |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU General Public License as |
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9 * published by the Free Software Foundation, either version 3 of the |
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10 * License, or (at your option) any later version. |
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11 * |
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12 * In addition, as a special exception, the copyright holders of this |
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13 * program give permission to link the code of its release with the |
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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15 * that use the same license as the "OpenSSL" library), and distribute |
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16 * the linked executables. You must obey the GNU General Public License |
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17 * in all respects for all of the code used other than "OpenSSL". If you |
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18 * modify file(s) with this exception, you may extend this exception to |
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19 * your version of the file(s), but you are not obligated to do so. If |
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20 * you do not wish to do so, delete this exception statement from your |
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21 * version. If you delete this exception statement from all source files |
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22 * in the program, then also delete it here. |
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23 * |
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24 * This program is distributed in the hope that it will be useful, but |
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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27 * General Public License for more details. |
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28 * |
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29 * You should have received a copy of the GNU General Public License |
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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31 **/ |
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32 |
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33 |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "OrthancRestApi.h" |
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36 |
2642 | 37 #include "../../Core/DicomParsing/FromDcmtkBridge.h" |
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38 #include "../../Core/Logging.h" |
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39 #include "../../Core/SerializationToolbox.h" |
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40 #include "../ServerContext.h" |
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41 #include "../ServerJobs/MergeStudyJob.h" |
2642 | 42 #include "../ServerJobs/ResourceModificationJob.h" |
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43 #include "../ServerJobs/SplitStudyJob.h" |
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44 |
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45 #include <boost/lexical_cast.hpp> |
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46 #include <boost/algorithm/string/predicate.hpp> |
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47 |
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48 namespace Orthanc |
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49 { |
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50 // Modification of DICOM instances ------------------------------------------ |
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51 |
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52 |
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53 static std::string GeneratePatientName(ServerContext& context) |
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54 { |
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55 uint64_t seq = context.GetIndex().IncrementGlobalSequence(GlobalProperty_AnonymizationSequence); |
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56 return "Anonymized" + boost::lexical_cast<std::string>(seq); |
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57 } |
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58 |
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59 |
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60 static int GetPriority(const Json::Value& request) |
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61 { |
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62 static const char* PRIORITY = "Priority"; |
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63 |
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64 if (request.isMember(PRIORITY)) |
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65 { |
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66 if (request[PRIORITY].type() == Json::intValue) |
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67 { |
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68 return request[PRIORITY].asInt(); |
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69 } |
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70 else |
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71 { |
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72 LOG(ERROR) << "Field \"" << PRIORITY << "\" of a modification request should be an integer"; |
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73 throw OrthancException(ErrorCode_BadFileFormat); |
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74 } |
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75 } |
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76 else |
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77 { |
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78 return 0; // Default priority |
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79 } |
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80 } |
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81 |
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82 |
2517 | 83 static void ParseModifyRequest(DicomModification& target, |
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84 int& priority, |
2517 | 85 const RestApiPostCall& call) |
86 { | |
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87 // curl http://localhost:8042/series/95a6e2bf-9296e2cc-bf614e2f-22b391ee-16e010e0/modify -X POST -d '{"Replace":{"InstitutionName":"My own clinic"},"Priority":9}' |
2517 | 88 |
89 Json::Value request; | |
90 if (call.ParseJsonRequest(request)) | |
91 { | |
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92 priority = GetPriority(request); |
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93 target.ParseModifyRequest(request); |
2517 | 94 } |
95 else | |
96 { | |
97 throw OrthancException(ErrorCode_BadFileFormat); | |
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98 } |
2517 | 99 } |
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100 |
2517 | 101 |
102 static void ParseAnonymizationRequest(DicomModification& target, | |
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103 int& priority, |
2517 | 104 RestApiPostCall& call) |
105 { | |
106 // curl http://localhost:8042/instances/6e67da51-d119d6ae-c5667437-87b9a8a5-0f07c49f/anonymize -X POST -d '{"Replace":{"PatientName":"hello","0010-0020":"world"},"Keep":["StudyDescription", "SeriesDescription"],"KeepPrivateTags": true,"Remove":["Modality"]}' > Anonymized.dcm | |
107 | |
108 Json::Value request; | |
109 if (call.ParseJsonRequest(request) && | |
110 request.isObject()) | |
111 { | |
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112 priority = GetPriority(request); |
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113 |
2518 | 114 bool patientNameReplaced; |
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115 target.ParseAnonymizationRequest(patientNameReplaced, request); |
2518 | 116 |
117 if (patientNameReplaced) | |
118 { | |
119 // Overwrite the random Patient's Name by one that is more | |
120 // user-friendly (provided none was specified by the user) | |
121 target.Replace(DICOM_TAG_PATIENT_NAME, GeneratePatientName(OrthancRestApi::GetContext(call)), true); | |
122 } | |
2517 | 123 } |
124 else | |
125 { | |
126 throw OrthancException(ErrorCode_BadFileFormat); | |
127 } | |
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128 } |
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129 |
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130 |
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131 static void AnonymizeOrModifyInstance(DicomModification& modification, |
974 | 132 RestApiPostCall& call) |
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133 { |
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134 std::string id = call.GetUriComponent("id", ""); |
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135 |
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136 std::auto_ptr<ParsedDicomFile> modified; |
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137 |
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138 { |
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139 ServerContext::DicomCacheLocker locker(OrthancRestApi::GetContext(call), id); |
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140 modified.reset(locker.GetDicom().Clone(true)); |
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141 } |
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142 |
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143 modification.Apply(*modified); |
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144 modified->Answer(call.GetOutput()); |
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145 } |
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146 |
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147 |
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148 |
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149 static void SubmitJob(std::auto_ptr<DicomModification>& modification, |
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150 bool isAnonymization, |
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151 ResourceType level, |
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152 int priority, |
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153 RestApiPostCall& call) |
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154 { |
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155 ServerContext& context = OrthancRestApi::GetContext(call); |
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156 |
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157 std::auto_ptr<ResourceModificationJob> job(new ResourceModificationJob(context)); |
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158 |
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159 boost::shared_ptr<ResourceModificationJob::Output> output(new ResourceModificationJob::Output(level)); |
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160 job->SetModification(modification.release(), isAnonymization); |
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161 job->SetOutput(output); |
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162 job->SetOrigin(call); |
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163 job->SetDescription("REST API"); |
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164 |
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165 context.AddChildInstances(*job, call.GetUriComponent("id", "")); |
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166 |
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167 if (context.GetJobsEngine().GetRegistry().SubmitAndWait(job.release(), priority)) |
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168 { |
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169 Json::Value json; |
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170 if (output->Format(json)) |
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171 { |
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172 call.GetOutput().AnswerJson(json); |
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173 return; |
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174 } |
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175 } |
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176 |
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177 call.GetOutput().SignalError(HttpStatus_500_InternalServerError); |
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178 } |
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179 |
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180 |
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181 |
974 | 182 static void ModifyInstance(RestApiPostCall& call) |
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183 { |
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184 DicomModification modification; |
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185 modification.SetAllowManualIdentifiers(true); |
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186 |
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187 int priority; |
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188 ParseModifyRequest(modification, priority, call); |
2517 | 189 |
190 if (modification.IsReplaced(DICOM_TAG_PATIENT_ID)) | |
191 { | |
192 modification.SetLevel(ResourceType_Patient); | |
193 } | |
194 else if (modification.IsReplaced(DICOM_TAG_STUDY_INSTANCE_UID)) | |
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195 { |
2517 | 196 modification.SetLevel(ResourceType_Study); |
197 } | |
198 else if (modification.IsReplaced(DICOM_TAG_SERIES_INSTANCE_UID)) | |
199 { | |
200 modification.SetLevel(ResourceType_Series); | |
201 } | |
202 else | |
203 { | |
204 modification.SetLevel(ResourceType_Instance); | |
205 } | |
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206 |
2517 | 207 AnonymizeOrModifyInstance(modification, call); |
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208 } |
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209 |
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210 |
974 | 211 static void AnonymizeInstance(RestApiPostCall& call) |
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212 { |
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213 DicomModification modification; |
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214 modification.SetAllowManualIdentifiers(true); |
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215 |
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216 int priority; |
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217 ParseAnonymizationRequest(modification, priority, call); |
2517 | 218 |
219 AnonymizeOrModifyInstance(modification, call); | |
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220 } |
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221 |
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222 |
2639 | 223 template <enum ResourceType resourceType> |
974 | 224 static void ModifyResource(RestApiPostCall& call) |
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225 { |
2639 | 226 std::auto_ptr<DicomModification> modification(new DicomModification); |
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227 |
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228 int priority; |
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229 ParseModifyRequest(*modification, priority, call); |
2517 | 230 |
2639 | 231 modification->SetLevel(resourceType); |
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232 SubmitJob(modification, false, resourceType, priority, call); |
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233 } |
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234 |
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235 |
2639 | 236 template <enum ResourceType resourceType> |
974 | 237 static void AnonymizeResource(RestApiPostCall& call) |
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238 { |
2639 | 239 std::auto_ptr<DicomModification> modification(new DicomModification); |
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240 |
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241 int priority; |
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242 ParseAnonymizationRequest(*modification, priority, call); |
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243 |
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244 SubmitJob(modification, true, resourceType, priority, call); |
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245 } |
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246 |
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247 |
1569 | 248 static void StoreCreatedInstance(std::string& id /* out */, |
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249 RestApiPostCall& call, |
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250 ParsedDicomFile& dicom) |
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251 { |
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252 DicomInstanceToStore toStore; |
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253 toStore.SetOrigin(DicomInstanceOrigin::FromRest(call)); |
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254 toStore.SetParsedDicomFile(dicom); |
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255 |
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256 ServerContext& context = OrthancRestApi::GetContext(call); |
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257 StoreStatus status = context.Store(id, toStore); |
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258 |
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259 if (status == StoreStatus_Failure) |
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260 { |
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261 throw OrthancException(ErrorCode_CannotStoreInstance); |
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262 } |
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263 } |
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264 |
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265 |
1569 | 266 static void CreateDicomV1(ParsedDicomFile& dicom, |
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267 RestApiPostCall& call, |
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268 const Json::Value& request) |
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269 { |
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270 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World"}' |
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271 // curl http://localhost:8042/tools/create-dicom -X POST -d '{"PatientName":"Hello^World","PixelData":"data:image/png;base64,iVBORw0KGgoAAAANSUhEUgAAABAAAAAQCAAAAAA6mKC9AAAACXBIWXMAAAsTAAALEwEAmpwYAAAAB3RJTUUH3gUGDDcB53FulQAAAElJREFUGNNtj0sSAEEEQ1+U+185s1CtmRkblQ9CZldsKHJDk6DLGLJa6chjh0ooQmpjXMM86zPwydGEj6Ed/UGykkEM8X+p3u8/8LcOJIWLGeMAAAAASUVORK5CYII="}' |
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272 |
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273 assert(request.isObject()); |
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274 LOG(WARNING) << "Using a deprecated call to /tools/create-dicom"; |
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275 |
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276 Json::Value::Members members = request.getMemberNames(); |
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277 for (size_t i = 0; i < members.size(); i++) |
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278 { |
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279 const std::string& name = members[i]; |
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280 if (request[name].type() != Json::stringValue) |
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281 { |
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282 throw OrthancException(ErrorCode_CreateDicomNotString); |
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283 } |
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284 |
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285 std::string value = request[name].asString(); |
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286 |
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287 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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288 if (tag == DICOM_TAG_PIXEL_DATA) |
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289 { |
1562 | 290 dicom.EmbedContent(value); |
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291 } |
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292 else |
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293 { |
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294 // This is V1, don't try and decode data URI scheme |
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295 dicom.ReplacePlainString(tag, value); |
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296 } |
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297 } |
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298 } |
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299 |
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300 |
1569 | 301 static void InjectTags(ParsedDicomFile& dicom, |
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302 const Json::Value& tags, |
1689 | 303 bool decodeBinaryTags) |
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304 { |
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305 if (tags.type() != Json::objectValue) |
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306 { |
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307 throw OrthancException(ErrorCode_BadRequest); |
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308 } |
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309 |
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310 // Inject the user-specified tags |
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311 Json::Value::Members members = tags.getMemberNames(); |
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312 for (size_t i = 0; i < members.size(); i++) |
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313 { |
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314 const std::string& name = members[i]; |
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315 DicomTag tag = FromDcmtkBridge::ParseTag(name); |
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316 |
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317 if (tag != DICOM_TAG_SPECIFIC_CHARACTER_SET) |
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318 { |
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319 if (tag != DICOM_TAG_PATIENT_ID && |
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320 tag != DICOM_TAG_ACQUISITION_DATE && |
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321 tag != DICOM_TAG_ACQUISITION_TIME && |
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322 tag != DICOM_TAG_CONTENT_DATE && |
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323 tag != DICOM_TAG_CONTENT_TIME && |
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324 tag != DICOM_TAG_INSTANCE_CREATION_DATE && |
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325 tag != DICOM_TAG_INSTANCE_CREATION_TIME && |
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326 tag != DICOM_TAG_SERIES_DATE && |
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327 tag != DICOM_TAG_SERIES_TIME && |
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328 tag != DICOM_TAG_STUDY_DATE && |
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329 tag != DICOM_TAG_STUDY_TIME && |
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330 dicom.HasTag(tag)) |
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331 { |
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332 throw OrthancException(ErrorCode_CreateDicomOverrideTag); |
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333 } |
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334 |
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335 if (tag == DICOM_TAG_PIXEL_DATA) |
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336 { |
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337 throw OrthancException(ErrorCode_CreateDicomUseContent); |
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338 } |
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339 else |
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340 { |
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341 dicom.Replace(tag, tags[name], decodeBinaryTags, DicomReplaceMode_InsertIfAbsent); |
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342 } |
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343 } |
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344 } |
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345 } |
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346 |
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347 |
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348 static void CreateSeries(RestApiPostCall& call, |
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349 ParsedDicomFile& base /* in */, |
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350 const Json::Value& content, |
1689 | 351 bool decodeBinaryTags) |
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352 { |
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353 assert(content.isArray()); |
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354 assert(content.size() > 0); |
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355 ServerContext& context = OrthancRestApi::GetContext(call); |
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356 |
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357 base.ReplacePlainString(DICOM_TAG_IMAGES_IN_ACQUISITION, boost::lexical_cast<std::string>(content.size())); |
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358 base.ReplacePlainString(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS, "1"); |
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359 |
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360 std::string someInstance; |
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361 |
1566 | 362 try |
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363 { |
1569 | 364 for (Json::ArrayIndex i = 0; i < content.size(); i++) |
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365 { |
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366 std::auto_ptr<ParsedDicomFile> dicom(base.Clone(false)); |
1566 | 367 const Json::Value* payload = NULL; |
368 | |
369 if (content[i].type() == Json::stringValue) | |
370 { | |
371 payload = &content[i]; | |
372 } | |
373 else if (content[i].type() == Json::objectValue) | |
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374 { |
1566 | 375 if (!content[i].isMember("Content")) |
376 { | |
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377 throw OrthancException(ErrorCode_CreateDicomNoPayload); |
1566 | 378 } |
379 | |
380 payload = &content[i]["Content"]; | |
381 | |
1569 | 382 if (content[i].isMember("Tags")) |
1570 | 383 { |
1689 | 384 InjectTags(*dicom, content[i]["Tags"], decodeBinaryTags); |
1570 | 385 } |
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386 } |
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387 |
1566 | 388 if (payload == NULL || |
389 payload->type() != Json::stringValue) | |
390 { | |
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391 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1566 | 392 } |
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393 |
1566 | 394 dicom->EmbedContent(payload->asString()); |
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395 dicom->ReplacePlainString(DICOM_TAG_INSTANCE_NUMBER, boost::lexical_cast<std::string>(i + 1)); |
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396 dicom->ReplacePlainString(DICOM_TAG_IMAGE_INDEX, boost::lexical_cast<std::string>(i + 1)); |
1566 | 397 |
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398 StoreCreatedInstance(someInstance, call, *dicom); |
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399 } |
1566 | 400 } |
1616 | 401 catch (OrthancException&) |
1566 | 402 { |
1569 | 403 // Error: Remove the newly-created series |
404 | |
405 std::string series; | |
406 if (context.GetIndex().LookupParent(series, someInstance)) | |
1570 | 407 { |
1569 | 408 Json::Value dummy; |
409 context.GetIndex().DeleteResource(dummy, series, ResourceType_Series); | |
1570 | 410 } |
1569 | 411 |
1616 | 412 throw; |
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413 } |
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414 |
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415 std::string series; |
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416 if (context.GetIndex().LookupParent(series, someInstance)) |
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417 { |
1569 | 418 OrthancRestApi::GetApi(call).AnswerStoredResource(call, series, ResourceType_Series, StoreStatus_Success); |
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419 } |
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420 } |
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421 |
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422 |
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423 static void CreateDicomV2(RestApiPostCall& call, |
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424 const Json::Value& request) |
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425 { |
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426 assert(request.isObject()); |
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427 ServerContext& context = OrthancRestApi::GetContext(call); |
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428 |
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429 if (!request.isMember("Tags") || |
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430 request["Tags"].type() != Json::objectValue) |
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431 { |
1569 | 432 throw OrthancException(ErrorCode_BadRequest); |
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433 } |
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434 |
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435 ParsedDicomFile dicom(true); |
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436 |
1557 | 437 { |
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438 Encoding encoding; |
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439 |
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440 if (request["Tags"].isMember("SpecificCharacterSet")) |
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441 { |
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442 const char* tmp = request["Tags"]["SpecificCharacterSet"].asCString(); |
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443 if (!GetDicomEncoding(encoding, tmp)) |
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444 { |
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445 LOG(ERROR) << "Unknown specific character set: " << std::string(tmp); |
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446 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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447 } |
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448 } |
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449 else |
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450 { |
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451 encoding = GetDefaultDicomEncoding(); |
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452 } |
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453 |
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454 dicom.SetEncoding(encoding); |
1557 | 455 } |
456 | |
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457 ResourceType parentType = ResourceType_Instance; |
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458 |
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459 if (request.isMember("Parent")) |
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460 { |
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461 // Locate the parent tags |
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462 std::string parent = request["Parent"].asString(); |
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Creation of DICOM files with encapsulated PDF
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463 if (!context.GetIndex().LookupResourceType(parentType, parent)) |
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464 { |
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465 throw OrthancException(ErrorCode_CreateDicomBadParent); |
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466 } |
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467 |
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468 if (parentType == ResourceType_Instance) |
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Creation of DICOM files with encapsulated PDF
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469 { |
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470 throw OrthancException(ErrorCode_CreateDicomParentIsInstance); |
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471 } |
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472 |
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473 // Select one existing child instance of the parent resource, to |
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474 // retrieve all its tags |
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475 Json::Value siblingTags; |
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476 |
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477 { |
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478 // Retrieve all the instances of the parent resource |
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479 std::list<std::string> siblingInstances; |
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480 context.GetIndex().GetChildInstances(siblingInstances, parent); |
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481 |
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482 if (siblingInstances.empty()) |
1569 | 483 { |
484 // Error: No instance (should never happen) | |
485 throw OrthancException(ErrorCode_InternalError); | |
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486 } |
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487 |
2124 | 488 context.ReadDicomAsJson(siblingTags, siblingInstances.front()); |
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489 } |
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490 |
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491 |
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492 // Choose the same encoding as the parent resource |
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493 { |
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494 static const char* SPECIFIC_CHARACTER_SET = "0008,0005"; |
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495 |
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496 if (siblingTags.isMember(SPECIFIC_CHARACTER_SET)) |
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497 { |
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498 Encoding encoding; |
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499 if (!siblingTags[SPECIFIC_CHARACTER_SET].isMember("Value") || |
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500 siblingTags[SPECIFIC_CHARACTER_SET]["Value"].type() != Json::stringValue || |
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501 !GetDicomEncoding(encoding, siblingTags[SPECIFIC_CHARACTER_SET]["Value"].asCString())) |
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502 { |
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503 throw OrthancException(ErrorCode_CreateDicomParentEncoding); |
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504 } |
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505 |
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506 dicom.SetEncoding(encoding); |
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507 } |
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508 } |
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509 |
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510 |
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511 // Retrieve the tags for all the parent modules |
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512 typedef std::set<DicomTag> ModuleTags; |
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513 ModuleTags moduleTags; |
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514 |
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Creation of DICOM files with encapsulated PDF
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515 ResourceType type = parentType; |
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516 for (;;) |
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517 { |
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Creation of DICOM files with encapsulated PDF
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518 DicomTag::AddTagsForModule(moduleTags, GetModule(type)); |
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519 |
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Creation of DICOM files with encapsulated PDF
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520 if (type == ResourceType_Patient) |
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Creation of DICOM files with encapsulated PDF
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521 { |
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Creation of DICOM files with encapsulated PDF
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522 break; // We're done |
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Creation of DICOM files with encapsulated PDF
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523 } |
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Creation of DICOM files with encapsulated PDF
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524 |
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Creation of DICOM files with encapsulated PDF
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525 // Go up |
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Creation of DICOM files with encapsulated PDF
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526 std::string tmp; |
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Creation of DICOM files with encapsulated PDF
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527 if (!context.GetIndex().LookupParent(tmp, parent)) |
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Creation of DICOM files with encapsulated PDF
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528 { |
1569 | 529 throw OrthancException(ErrorCode_InternalError); |
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530 } |
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531 |
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Creation of DICOM files with encapsulated PDF
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532 parent = tmp; |
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533 type = GetParentResourceType(type); |
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Creation of DICOM files with encapsulated PDF
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534 } |
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Creation of DICOM files with encapsulated PDF
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535 |
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Creation of DICOM files with encapsulated PDF
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536 for (ModuleTags::const_iterator it = moduleTags.begin(); |
1616 | 537 it != moduleTags.end(); ++it) |
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538 { |
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Creation of DICOM files with encapsulated PDF
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539 std::string t = it->Format(); |
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Creation of DICOM files with encapsulated PDF
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540 if (siblingTags.isMember(t)) |
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Creation of DICOM files with encapsulated PDF
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541 { |
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Creation of DICOM files with encapsulated PDF
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542 const Json::Value& tag = siblingTags[t]; |
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Creation of DICOM files with encapsulated PDF
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543 if (tag["Type"] == "Null") |
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Creation of DICOM files with encapsulated PDF
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544 { |
1982
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Modification of instances can now replace PixelData
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545 dicom.ReplacePlainString(*it, ""); |
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Creation of DICOM files with encapsulated PDF
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546 } |
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Creation of DICOM files with encapsulated PDF
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547 else if (tag["Type"] == "String") |
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Creation of DICOM files with encapsulated PDF
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548 { |
1557 | 549 std::string value = tag["Value"].asString(); |
1982
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Modification of instances can now replace PixelData
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550 dicom.ReplacePlainString(*it, Toolbox::ConvertFromUtf8(value, dicom.GetEncoding())); |
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Creation of DICOM files with encapsulated PDF
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551 } |
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Creation of DICOM files with encapsulated PDF
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552 } |
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Creation of DICOM files with encapsulated PDF
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553 } |
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Creation of DICOM files with encapsulated PDF
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554 } |
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Creation of DICOM files with encapsulated PDF
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555 |
1641
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Support of binary tags encoded using data URI scheme
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diff
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556 |
1689 | 557 bool decodeBinaryTags = true; |
1641
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Support of binary tags encoded using data URI scheme
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diff
changeset
|
558 if (request.isMember("InterpretBinaryTags")) |
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Support of binary tags encoded using data URI scheme
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559 { |
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Support of binary tags encoded using data URI scheme
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560 const Json::Value& v = request["InterpretBinaryTags"]; |
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Support of binary tags encoded using data URI scheme
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|
561 if (v.type() != Json::booleanValue) |
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Support of binary tags encoded using data URI scheme
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562 { |
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Support of binary tags encoded using data URI scheme
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|
563 throw OrthancException(ErrorCode_BadRequest); |
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diff
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|
564 } |
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Support of binary tags encoded using data URI scheme
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diff
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|
565 |
1689 | 566 decodeBinaryTags = v.asBool(); |
1641
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Support of binary tags encoded using data URI scheme
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|
567 } |
4e56b5a206b7
Support of binary tags encoded using data URI scheme
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|
568 |
1565
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add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
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|
569 |
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Creation of DICOM files with encapsulated PDF
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changeset
|
570 // Inject time-related information |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
571 std::string date, time; |
2475
8cc3ca64a534
Orthanc now uses UTC (universal time) instead of local time in its database
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
572 SystemToolbox::GetNowDicom(date, time, true /* use UTC time (not local time) */); |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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1934
diff
changeset
|
573 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_DATE, date); |
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Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
574 dicom.ReplacePlainString(DICOM_TAG_ACQUISITION_TIME, time); |
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Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
575 dicom.ReplacePlainString(DICOM_TAG_CONTENT_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
576 dicom.ReplacePlainString(DICOM_TAG_CONTENT_TIME, time); |
b5d4f9c156ad
Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1934
diff
changeset
|
577 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_DATE, date); |
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Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
578 dicom.ReplacePlainString(DICOM_TAG_INSTANCE_CREATION_TIME, time); |
1555
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Creation of DICOM files with encapsulated PDF
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changeset
|
579 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
580 if (parentType == ResourceType_Patient || |
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parents:
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diff
changeset
|
581 parentType == ResourceType_Study || |
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changeset
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582 parentType == ResourceType_Instance /* no parent */) |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
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|
583 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
584 dicom.ReplacePlainString(DICOM_TAG_SERIES_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
585 dicom.ReplacePlainString(DICOM_TAG_SERIES_TIME, time); |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
586 } |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
587 |
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
588 if (parentType == ResourceType_Patient || |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
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589 parentType == ResourceType_Instance /* no parent */) |
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Creation of DICOM files with encapsulated PDF
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parents:
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changeset
|
590 { |
1982
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
591 dicom.ReplacePlainString(DICOM_TAG_STUDY_DATE, date); |
b5d4f9c156ad
Modification of instances can now replace PixelData
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parents:
1934
diff
changeset
|
592 dicom.ReplacePlainString(DICOM_TAG_STUDY_TIME, time); |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
593 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
594 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
595 |
1689 | 596 InjectTags(dicom, request["Tags"], decodeBinaryTags); |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
597 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
598 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1486
diff
changeset
|
599 // Inject the content (either an image, or a PDF file) |
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
600 if (request.isMember("Content")) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
601 { |
1564
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
602 const Json::Value& content = request["Content"]; |
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creation of DICOM series
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diff
changeset
|
603 |
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creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1562
diff
changeset
|
604 if (content.type() == Json::stringValue) |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
605 { |
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creation of DICOM series
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diff
changeset
|
606 dicom.EmbedContent(request["Content"].asString()); |
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creation of DICOM series
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diff
changeset
|
607 |
1b7def486e62
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parents:
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diff
changeset
|
608 } |
1b7def486e62
creation of DICOM series
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parents:
1562
diff
changeset
|
609 else if (content.type() == Json::arrayValue) |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
610 { |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
611 if (content.size() > 0) |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
612 { |
1565
4b23310eb7e8
add tags per instances in a series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
613 // Let's create a series instead of a single instance |
1689 | 614 CreateSeries(call, dicom, content, decodeBinaryTags); |
1564
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creation of DICOM series
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parents:
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diff
changeset
|
615 return; |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
616 } |
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
617 } |
1b7def486e62
creation of DICOM series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
618 else |
1555
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Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
619 { |
1582
bd1889029cbb
encoding of exceptions
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
620 throw OrthancException(ErrorCode_CreateDicomUseDataUriScheme); |
1555
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Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
621 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
622 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
623 |
1564
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parents:
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diff
changeset
|
624 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
625 StoreCreatedInstance(id, call, dicom); |
1569 | 626 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
627 |
1564
1b7def486e62
creation of DICOM series
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parents:
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diff
changeset
|
628 return; |
1555
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
629 } |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
630 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
631 |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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diff
changeset
|
632 static void CreateDicom(RestApiPostCall& call) |
d6a93e12b1c1
Creation of DICOM files with encapsulated PDF
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parents:
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diff
changeset
|
633 { |
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Creation of DICOM files with encapsulated PDF
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diff
changeset
|
634 Json::Value request; |
1569 | 635 if (!call.ParseJsonRequest(request) || |
636 !request.isObject()) | |
1570 | 637 { |
638 throw OrthancException(ErrorCode_BadRequest); | |
639 } | |
1569 | 640 |
641 if (request.isMember("Tags")) | |
1570 | 642 { |
643 CreateDicomV2(call, request); | |
644 } | |
1569 | 645 else |
1570 | 646 { |
647 // Compatibility with Orthanc <= 0.9.3 | |
1805
f08978b1f45b
c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1699
diff
changeset
|
648 ParsedDicomFile dicom(true); |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1570
diff
changeset
|
649 CreateDicomV1(dicom, call, request); |
1569 | 650 |
1570 | 651 std::string id; |
1572
904096e7367e
More information about the origin request in OnStoredInstance() callbacks
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
652 StoreCreatedInstance(id, call, dicom); |
1570 | 653 OrthancRestApi::GetApi(call).AnswerStoredResource(call, id, ResourceType_Instance, StoreStatus_Success); |
654 } | |
796
e7b1ca0f1e04
creation of dicom files
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parents:
795
diff
changeset
|
655 } |
e7b1ca0f1e04
creation of dicom files
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parents:
795
diff
changeset
|
656 |
e7b1ca0f1e04
creation of dicom files
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parents:
795
diff
changeset
|
657 |
2844
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
658 static void SplitStudy(RestApiPostCall& call) |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
659 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
660 ServerContext& context = OrthancRestApi::GetContext(call); |
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New URI: "/studies/.../split" to split a study
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parents:
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diff
changeset
|
661 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
662 Json::Value request; |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
663 if (!call.ParseJsonRequest(request)) |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
664 { |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
665 // Bad JSON request |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
666 throw OrthancException(ErrorCode_BadFileFormat); |
99863d6245b2
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diff
changeset
|
667 } |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
668 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
669 const std::string study = call.GetUriComponent("id", ""); |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
670 int priority = Toolbox::GetJsonIntegerField(request, "Priority", 0); |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
671 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
672 std::auto_ptr<SplitStudyJob> job(new SplitStudyJob(context, study)); |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
673 job->SetOrigin(call); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
674 job->SetDescription("REST API"); |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
675 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
676 std::vector<std::string> series; |
99863d6245b2
New URI: "/studies/.../split" to split a study
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diff
changeset
|
677 SerializationToolbox::ReadArrayOfStrings(series, request, "Series"); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
678 |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
679 for (size_t i = 0; i < series.size(); i++) |
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diff
changeset
|
680 { |
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changeset
|
681 job->AddSourceSeries(series[i]); |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
682 } |
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New URI: "/studies/.../split" to split a study
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diff
changeset
|
683 |
99863d6245b2
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diff
changeset
|
684 static const char* KEEP_SOURCE = "KeepSource"; |
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685 if (request.isMember(KEEP_SOURCE)) |
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686 { |
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687 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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688 } |
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689 |
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690 static const char* REMOVE = "Remove"; |
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691 if (request.isMember(REMOVE)) |
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692 { |
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693 if (request[REMOVE].type() != Json::arrayValue) |
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694 { |
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695 throw OrthancException(ErrorCode_BadFileFormat); |
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696 } |
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697 |
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698 for (Json::Value::ArrayIndex i = 0; i < request[REMOVE].size(); i++) |
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699 { |
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700 if (request[REMOVE][i].type() != Json::stringValue) |
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701 { |
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702 throw OrthancException(ErrorCode_BadFileFormat); |
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703 } |
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704 else |
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705 { |
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706 job->Remove(FromDcmtkBridge::ParseTag(request[REMOVE][i].asCString())); |
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707 } |
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708 } |
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709 } |
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710 |
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711 static const char* REPLACE = "Replace"; |
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712 if (request.isMember(REPLACE)) |
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713 { |
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714 if (request[REPLACE].type() != Json::objectValue) |
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715 { |
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716 throw OrthancException(ErrorCode_BadFileFormat); |
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717 } |
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718 |
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719 Json::Value::Members tags = request[REPLACE].getMemberNames(); |
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720 |
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721 for (size_t i = 0; i < tags.size(); i++) |
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722 { |
99863d6245b2
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723 const Json::Value& value = request[REPLACE][tags[i]]; |
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724 |
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725 if (value.type() != Json::stringValue) |
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726 { |
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727 throw OrthancException(ErrorCode_BadFileFormat); |
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728 } |
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New URI: "/studies/.../split" to split a study
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729 else |
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New URI: "/studies/.../split" to split a study
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|
730 { |
99863d6245b2
New URI: "/studies/.../split" to split a study
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731 job->Replace(FromDcmtkBridge::ParseTag(tags[i]), value.asString()); |
99863d6245b2
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changeset
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732 } |
99863d6245b2
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733 } |
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734 } |
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New URI: "/studies/.../split" to split a study
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changeset
|
735 |
99863d6245b2
New URI: "/studies/.../split" to split a study
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736 std::string id; |
99863d6245b2
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737 context.GetJobsEngine().GetRegistry().Submit(id, job.release(), priority); |
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738 |
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739 Json::Value v; |
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740 v["ID"] = id; |
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741 call.GetOutput().AnswerJson(v); |
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changeset
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742 } |
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changeset
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743 |
99863d6245b2
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744 |
2853
52b017d22a4f
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diff
changeset
|
745 static void MergeStudy(RestApiPostCall& call) |
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changeset
|
746 { |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
747 ServerContext& context = OrthancRestApi::GetContext(call); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
748 |
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diff
changeset
|
749 Json::Value request; |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
750 if (!call.ParseJsonRequest(request)) |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
751 { |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
752 // Bad JSON request |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
753 throw OrthancException(ErrorCode_BadFileFormat); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
754 } |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
755 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
756 const std::string study = call.GetUriComponent("id", ""); |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
757 int priority = Toolbox::GetJsonIntegerField(request, "Priority", 0); |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
758 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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changeset
|
759 std::auto_ptr<MergeStudyJob> job(new MergeStudyJob(context, study)); |
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New URI: "/studies/.../merge" to merge a study
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changeset
|
760 job->SetOrigin(call); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
761 job->SetDescription("REST API"); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
762 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
763 std::vector<std::string> resources; |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
764 SerializationToolbox::ReadArrayOfStrings(resources, request, "Resources"); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
765 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
766 for (size_t i = 0; i < resources.size(); i++) |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
767 { |
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diff
changeset
|
768 job->AddSource(resources[i]); |
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changeset
|
769 } |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
770 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
771 static const char* KEEP_SOURCE = "KeepSource"; |
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New URI: "/studies/.../merge" to merge a study
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changeset
|
772 if (request.isMember(KEEP_SOURCE)) |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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changeset
|
773 { |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
774 job->SetKeepSource(SerializationToolbox::ReadBoolean(request, KEEP_SOURCE)); |
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New URI: "/studies/.../merge" to merge a study
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|
775 } |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
776 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
777 std::string id; |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
778 context.GetJobsEngine().GetRegistry().Submit(id, job.release(), priority); |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
779 |
52b017d22a4f
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diff
changeset
|
780 Json::Value v; |
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New URI: "/studies/.../merge" to merge a study
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changeset
|
781 v["ID"] = id; |
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New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
782 call.GetOutput().AnswerJson(v); |
52b017d22a4f
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diff
changeset
|
783 } |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
784 |
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
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diff
changeset
|
785 |
751
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refactoring of OrthancRestApi
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diff
changeset
|
786 void OrthancRestApi::RegisterAnonymizeModify() |
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refactoring of OrthancRestApi
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diff
changeset
|
787 { |
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refactoring of OrthancRestApi
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diff
changeset
|
788 Register("/instances/{id}/modify", ModifyInstance); |
2639 | 789 Register("/series/{id}/modify", ModifyResource<ResourceType_Series>); |
790 Register("/studies/{id}/modify", ModifyResource<ResourceType_Study>); | |
791 Register("/patients/{id}/modify", ModifyResource<ResourceType_Patient>); | |
751
5197fd35333c
refactoring of OrthancRestApi
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diff
changeset
|
792 |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
793 Register("/instances/{id}/anonymize", AnonymizeInstance); |
2639 | 794 Register("/series/{id}/anonymize", AnonymizeResource<ResourceType_Series>); |
795 Register("/studies/{id}/anonymize", AnonymizeResource<ResourceType_Study>); | |
796 Register("/patients/{id}/anonymize", AnonymizeResource<ResourceType_Patient>); | |
796
e7b1ca0f1e04
creation of dicom files
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
795
diff
changeset
|
797 |
1120
009dce4ea2f6
/tools/create-dicom now accepts PatientID
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1010
diff
changeset
|
798 Register("/tools/create-dicom", CreateDicom); |
2844
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2825
diff
changeset
|
799 |
99863d6245b2
New URI: "/studies/.../split" to split a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2825
diff
changeset
|
800 Register("/studies/{id}/split", SplitStudy); |
2853
52b017d22a4f
New URI: "/studies/.../merge" to merge a study
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2844
diff
changeset
|
801 Register("/studies/{id}/merge", MergeStudy); |
751
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
802 } |
5197fd35333c
refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
803 } |