Mercurial > hg > orthanc

annotate Core/DicomParsing/ParsedDicomFile.h @ 3848:44bfcfdf42e8 transcoding

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
integration mainline->transcoding
author Sebastien Jodogne <s.jodogne@gmail.com>
date Mon, 20 Apr 2020 14:04:14 +0200
parents 4922bdd046dd
children 7610af1532c3
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
1 /**
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
2 * Orthanc - A Lightweight, RESTful DICOM Store
1900
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1831
diff changeset
3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
1288
6e7e5ed91c2d upgrade to year 2015
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1160
diff changeset
4 * Department, University Hospital of Liege, Belgium
3640
94f4a18a79cc upgrade to year 2020
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3577
diff changeset
5 * Copyright (C) 2017-2020 Osimis S.A., Belgium
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
6 *
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
7 * This program is free software: you can redistribute it and/or
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
8 * modify it under the terms of the GNU General Public License as
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
9 * published by the Free Software Foundation, either version 3 of the
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
10 * License, or (at your option) any later version.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
11 *
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
12 * In addition, as a special exception, the copyright holders of this
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
13 * program give permission to link the code of its release with the
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
15 * that use the same license as the "OpenSSL" library), and distribute
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
16 * the linked executables. You must obey the GNU General Public License
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
17 * in all respects for all of the code used other than "OpenSSL". If you
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
18 * modify file(s) with this exception, you may extend this exception to
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
19 * your version of the file(s), but you are not obligated to do so. If
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
20 * you do not wish to do so, delete this exception statement from your
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
21 * version. If you delete this exception statement from all source files
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
22 * in the program, then also delete it here.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
23 *
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
24 * This program is distributed in the hope that it will be useful, but
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
25 * WITHOUT ANY WARRANTY; without even the implied warranty of
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
27 * General Public License for more details.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
28 *
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
29 * You should have received a copy of the GNU General Public License
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
31 **/
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
32
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
33
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
34 #pragma once
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
35
2380
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
36 #if !defined(ORTHANC_ENABLE_JPEG)
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
37 # error Macro ORTHANC_ENABLE_JPEG must be defined to use this file
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
38 #endif
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
39
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
40 #if !defined(ORTHANC_ENABLE_PNG)
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
41 # error Macro ORTHANC_ENABLE_PNG must be defined to use this file
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
42 #endif
96b3ec054b69 reorganization in macros
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2310
diff changeset
43
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
44 #if !defined(ORTHANC_ENABLE_CIVETWEB)
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
45 # error Macro ORTHANC_ENABLE_CIVETWEB must be defined to use this file
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
46 #endif
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
47
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
48 #if !defined(ORTHANC_ENABLE_MONGOOSE)
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
49 # error Macro ORTHANC_ENABLE_MONGOOSE must be defined to use this file
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
50 #endif
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
51
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
52 #if !defined(ORTHANC_SANDBOXED)
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
53 # error The macro ORTHANC_SANDBOXED must be defined
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
54 #endif
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
55
3558
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
56 #if !defined(ORTHANC_ENABLE_DCMTK)
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
57 # error The macro ORTHANC_ENABLE_DCMTK must be defined
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
58 #endif
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
59
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
60 #if ORTHANC_ENABLE_DCMTK != 1
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
61 # error The macro ORTHANC_ENABLE_DCMTK must be set to 1 to use this file
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
62 #endif
36c0ce0188cc safeguarding inclusion of ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3342
diff changeset
63
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
64 #include "ITagVisitor.h"
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
65 #include "../DicomFormat/DicomInstanceHasher.h"
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
66 #include "../Images/ImageAccessor.h"
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
67 #include "../IDynamicObject.h"
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
68 #include "../Toolbox.h"
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
69
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
70 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
71 # include "../RestApi/RestApiOutput.h"
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
72 #endif
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
73
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
74 #include <boost/shared_ptr.hpp>
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
75
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
76
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
77 class DcmDataset;
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
78 class DcmFileFormat;
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
79
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
80 namespace Orthanc
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
81 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
82 class ParsedDicomFile : public IDynamicObject
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
83 {
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
84 private:
794
437c4a83d2cc refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 793
diff changeset
85 struct PImpl;
2846
d386abc18133 simplification in SplitStudyJob, fix possible memory leak
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2521
diff changeset
86 boost::shared_ptr<PImpl> pimpl_;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
87
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
88 ParsedDicomFile(ParsedDicomFile& other,
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
89 bool keepSopInstanceUid);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
90
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
91 void CreateFromDicomMap(const DicomMap& source,
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
92 Encoding defaultEncoding,
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
93 bool permissive);
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
94
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
95 void RemovePrivateTagsInternal(const std::set<DicomTag>* toKeep);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
96
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
97 void UpdateStorageUid(const DicomTag& tag,
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
98 const std::string& value,
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
99 bool decodeDataUriScheme);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
100
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
101 void InvalidateCache();
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
102
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
103 bool EmbedContentInternal(const std::string& dataUriScheme);
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
104
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
105 public:
1805
f08978b1f45b c-find scu for modality worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1800
diff changeset
106 ParsedDicomFile(bool createIdentifiers); // Create a minimal DICOM instance
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
107
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
108 ParsedDicomFile(const DicomMap& map,
3276
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
109 Encoding defaultEncoding,
9b0e67161600 More tolerance wrt. invalid DICOM files that must be returned by Orthanc C-FIND SCP
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3217
diff changeset
110 bool permissive);
2202
9b373b7d6713 Fix handling of encodings in C-FIND requests
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2142
diff changeset
111
1800
30e97a1f4093 callback for handling worklists with plugins
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1788
diff changeset
112 ParsedDicomFile(const void* content,
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
113 size_t size);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
114
791
381f90e2b69d refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 790
diff changeset
115 ParsedDicomFile(const std::string& content);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
116
1788
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
117 ParsedDicomFile(DcmDataset& dicom);
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
118
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
119 ParsedDicomFile(DcmFileFormat& dicom);
6a2d507ef064 getting rid of opaque data structures
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1787
diff changeset
120
1824
b530c3dfe2a6 refactoring image decoding
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1818
diff changeset
121 DcmFileFormat& GetDcmtkObject() const;
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
122
2521
6db878376018 support anonymization of CurrentRequestedProcedureEvidenceSequence
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2512
diff changeset
123 ParsedDicomFile* Clone(bool keepSopInstanceUid);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
124
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
125 #if ORTHANC_ENABLE_CIVETWEB == 1 || ORTHANC_ENABLE_MONGOOSE == 1
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
126 void SendPathValue(RestApiOutput& output,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
127 const UriComponents& uri);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
128
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
129 void Answer(RestApiOutput& output);
2394
75c779ca948c fix compilation without Web server
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2382
diff changeset
130 #endif
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
131
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
132 void Remove(const DicomTag& tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
133
2310
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
134 // Replace the DICOM tag as a NULL/empty value (e.g. for anonymization)
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
135 void Clear(const DicomTag& tag,
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
136 bool onlyIfExists);
b7fba68747f6 DicomModification::Clear()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2281
diff changeset
137
1699
8ca0e89798b2 "/modify" can insert/modify sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
138 void Replace(const DicomTag& tag,
8ca0e89798b2 "/modify" can insert/modify sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
139 const std::string& utf8Value,
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
140 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
141 DicomReplaceMode mode,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
142 const std::string& privateCreator /* used only for private tags */);
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
143
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
144 void Replace(const DicomTag& tag,
1699
8ca0e89798b2 "/modify" can insert/modify sequences
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1695
diff changeset
145 const Json::Value& value, // Assumed to be encoded with UTF-8
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
146 bool decodeDataUriScheme,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
147 DicomReplaceMode mode,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
148 const std::string& privateCreator /* used only for private tags */);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
149
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
150 void Insert(const DicomTag& tag,
1695
18c02c6987d5 fix for encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1693
diff changeset
151 const Json::Value& value, // Assumed to be encoded with UTF-8
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
152 bool decodeDataUriScheme,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
153 const std::string& privateCreator /* used only for private tags */);
1693
558b25228a23 creation of tag hierarchy from json
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1686
diff changeset
154
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
155 // Cannot be applied to private tags
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
156 void ReplacePlainString(const DicomTag& tag,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
157 const std::string& utf8Value);
1982
b5d4f9c156ad Modification of instances can now replace PixelData
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1950
diff changeset
158
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
159 // Cannot be applied to private tags
2889
f3c1eda54e47 Allow creation of MONOCHROME1 greyscale images in tools/create-dicom
amazy
parents: 2846
diff changeset
160 void SetIfAbsent(const DicomTag& tag,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
161 const std::string& utf8Value);
2889
f3c1eda54e47 Allow creation of MONOCHROME1 greyscale images in tools/create-dicom
amazy
parents: 2846
diff changeset
162
991
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
163 void RemovePrivateTags()
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
164 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
165 RemovePrivateTagsInternal(NULL);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
166 }
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
167
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
168 void RemovePrivateTags(const std::set<DicomTag>& toKeep)
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
169 {
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
170 RemovePrivateTagsInternal(&toKeep);
2f76b92addd4 keep private tags during anonymization
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 956
diff changeset
171 }
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
172
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
173 // WARNING: This function handles the decoding of strings to UTF8
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
174 bool GetTagValue(std::string& value,
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
175 const DicomTag& tag);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
176
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
177 DicomInstanceHasher GetHasher();
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
178
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
179 void SaveToMemoryBuffer(std::string& buffer);
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
180
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
181 #if ORTHANC_SANDBOXED == 0
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
182 void SaveToFile(const std::string& path);
2512
4dcafa8d6633 SystemToolbox::GenerateUuid moved to Toolbox::GenerateUuid
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2499
diff changeset
183 #endif
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
184
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
185 void EmbedContent(const std::string& dataUriScheme);
800
ecedd89055db generation of DICOM images from PNG files
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 795
diff changeset
186
1562
2084b7c20478 refactoring
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1556
diff changeset
187 void EmbedImage(const ImageAccessor& accessor);
874
87791ebc1f50 download matlab images
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 800
diff changeset
188
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
189 void EmbedImage(MimeType mime,
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
190 const std::string& content);
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
191
3217
cf8cbeb35f33 preliminary support of Korean character set
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3060
diff changeset
192 Encoding DetectEncoding(bool& hasCodeExtensions) const;
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
193
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
194 // WARNING: This function only sets the encoding, it will not
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
195 // convert the encoding of the tags. Use "ChangeEncoding()" if need be.
1090
e494ceb8d763 support more encodings
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 991
diff changeset
196 void SetEncoding(Encoding encoding);
1160
80671157d051 generalization of create-dicom
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1090
diff changeset
197
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
198 void DatasetToJson(Json::Value& target,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
199 DicomToJsonFormat format,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
200 DicomToJsonFlags flags,
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
201 unsigned int maxStringLength);
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
202
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
203 void DatasetToJson(Json::Value& target,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
204 DicomToJsonFormat format,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
205 DicomToJsonFlags flags,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
206 unsigned int maxStringLength,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
207 const std::set<DicomTag>& ignoreTagLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
208
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
209 // This version uses the default parameters for
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
210 // FileContentType_DicomAsJson
2409
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
211 void DatasetToJson(Json::Value& target,
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
212 const std::set<DicomTag>& ignoreTagLength);
e4045b3c9772 ignore-length argument if retrieving DICOM tags
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2394
diff changeset
213
2128
9329ba17a069 Possibility to DELETE "dicom-as-json" attachments to reconstruct them
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1982
diff changeset
214 void DatasetToJson(Json::Value& target);
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
215
1831
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1826
diff changeset
216 void HeaderToJson(Json::Value& target,
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1826
diff changeset
217 DicomToJsonFormat format);
3ae2ff249675 "/instances/.../header" to get the meta information (header) of the DICOM instance
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1826
diff changeset
218
1555
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
219 bool HasTag(const DicomTag& tag) const;
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
220
d6a93e12b1c1 Creation of DICOM files with encapsulated PDF
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1288
diff changeset
221 void EmbedPdf(const std::string& pdf);
1556
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
222
b8dc2f855a83 Preview of PDF files encapsulated in DICOM from Orthanc Explorer
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1555
diff changeset
223 bool ExtractPdf(std::string& pdf);
1662
09be34b2f30e ParsedDicomFile::Convert()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1612
diff changeset
224
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
225 void GetRawFrame(std::string& target, // OUT
2908
9d277f8ad698 new enumeration: MimeType
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2905
diff changeset
226 MimeType& mime, // OUT
1924
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
227 unsigned int frameId); // IN
6c73df12ca51 New URI: "/instances/.../frames/.../raw" to access the raw frames (bypass image decoding)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1902
diff changeset
228
1950
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
229 unsigned int GetFramesCount() const;
533ff46e944b return a single raw frame from DICOM videos
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1935
diff changeset
230
1818
1065401501fb ParsedDicomFile::CreateFromJson
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 1805
diff changeset
231 static ParsedDicomFile* CreateFromJson(const Json::Value& value,
3691
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
232 DicomFromJsonFlags flags,
4922bdd046dd Fix issue #140 (Modifying private tags with REST API changes VR from LO to UN) - DANGEROUS COMMIT
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3640
diff changeset
233 const std::string& privateCreator);
2207
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
234
6dc3bdb4088b Fix handling of encodings in C-FIND for worklists
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2202
diff changeset
235 void ChangeEncoding(Encoding target);
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
236
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
237 void ExtractDicomSummary(DicomMap& target) const;
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
238
3577
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3558
diff changeset
239 void ExtractDicomSummary(DicomMap& target,
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3558
diff changeset
240 const std::set<DicomTag>& ignoreTagLength) const;
33cfcc74d1b1 argument "ignoreTagLength" to ParsedDicomFile::ExtractDicomSummary()
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3558
diff changeset
241
2209
e3fd5bc429a2 URI to reconstruct the main DICOM tags, the JSON summary and the metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2207
diff changeset
242 bool LookupTransferSyntax(std::string& result);
2281
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
243
e002430baa41 Fix issue #44 (Bad interpretation of photometric interpretation MONOCHROME1)
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2244
diff changeset
244 bool LookupPhotometricInterpretation(PhotometricInterpretation& result) const;
2499
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
245
83b8b6743531 ITagVisitor - for anonymization relationships
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2447
diff changeset
246 void Apply(ITagVisitor& visitor);
790
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
247 };
331eaf9d9d69 ParsedDicomFile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
248 }