Mercurial > hg > orthanc

annotate OrthancServer/Sources/ServerJobs/ResourceModificationJob.cpp @ 4870:43e613a7756b

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author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 11 Jan 2022 11:15:42 +0100
parents 7053502fbf97
children 6eff25f70121
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2022 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2022 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * In addition, as a special exception, the copyright holders of this
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14 * program give permission to link the code of its release with the
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15 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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16 * that use the same license as the "OpenSSL" library), and distribute
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17 * the linked executables. You must obey the GNU General Public License
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18 * in all respects for all of the code used other than "OpenSSL". If you
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19 * modify file(s) with this exception, you may extend this exception to
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20 * your version of the file(s), but you are not obligated to do so. If
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21 * you do not wish to do so, delete this exception statement from your
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22 * version. If you delete this exception statement from all source files
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23 * in the program, then also delete it here.
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24 *
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25 * This program is distributed in the hope that it will be useful, but
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26 * WITHOUT ANY WARRANTY; without even the implied warranty of
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27 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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28 * General Public License for more details.
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29 *
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30 * You should have received a copy of the GNU General Public License
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31 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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32 **/
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33
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34
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35 #include "../PrecompiledHeadersServer.h"
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36 #include "ResourceModificationJob.h"
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37
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38 #include "../../../OrthancFramework/Sources/Logging.h"
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39 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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40 #include "../ServerContext.h"
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41
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42 #include <dcmtk/dcmdata/dcfilefo.h>
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43 #include <dcmtk/dcmdata/dcdeftag.h>
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44 #include <cassert>
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45
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46 namespace Orthanc
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47 {
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48 static void FormatResource(Json::Value& target,
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49 ResourceType level,
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50 const std::string& id)
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51 {
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52 target["Type"] = EnumerationToString(level);
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53 target["ID"] = id;
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54 target["Path"] = GetBasePath(level, id);
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55 }
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56
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57 class ResourceModificationJob::SingleOutput : public IOutput
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58 {
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59 private:
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60 ResourceType level_;
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61 bool isFirst_;
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62 std::string id_;
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63 std::string patientId_;
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64
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65 public:
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66 explicit SingleOutput(ResourceType level) :
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67 level_(level),
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68 isFirst_(true)
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69 {
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70 if (level_ != ResourceType_Patient &&
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71 level_ != ResourceType_Study &&
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72 level_ != ResourceType_Series)
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73 {
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74 throw OrthancException(ErrorCode_ParameterOutOfRange);
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75 }
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76 }
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77
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78 virtual void Update(DicomInstanceHasher& hasher) ORTHANC_OVERRIDE
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79 {
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80 if (isFirst_)
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81 {
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82 switch (level_)
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83 {
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84 case ResourceType_Series:
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85 id_ = hasher.HashSeries();
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86 break;
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87
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88 case ResourceType_Study:
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89 id_ = hasher.HashStudy();
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90 break;
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91
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92 case ResourceType_Patient:
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93 id_ = hasher.HashPatient();
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94 break;
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95
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96 default:
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97 throw OrthancException(ErrorCode_InternalError);
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98 }
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99
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100 patientId_ = hasher.HashPatient();
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101 isFirst_ = false;
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102 }
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103 }
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104
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105 virtual void Format(Json::Value& target) const ORTHANC_OVERRIDE
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106 {
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107 assert(target.type() == Json::objectValue);
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108
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109 if (!isFirst_)
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110 {
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111 FormatResource(target, level_, id_);
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112 target["PatientID"] = patientId_;
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113 }
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114 }
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115
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116 virtual bool IsSingleResource() const ORTHANC_OVERRIDE
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117 {
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118 return true;
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119 }
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120
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121 ResourceType GetLevel() const
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122 {
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123 return level_;
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124 }
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125 };
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126
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127
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128 class ResourceModificationJob::MultipleOutputs : public IOutput
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129 {
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130 private:
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131 static void FormatResources(Json::Value& target,
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132 ResourceType level,
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133 const std::set<std::string>& resources)
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134 {
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135 assert(target.type() == Json::arrayValue);
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136
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137 for (std::set<std::string>::const_iterator
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138 it = resources.begin(); it != resources.end(); ++it)
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139 {
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140 Json::Value item = Json::objectValue;
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141 FormatResource(item, level, *it);
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142 target.append(item);
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143 }
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144 }
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145
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146 std::set<std::string> instances_;
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147 std::set<std::string> series_;
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148 std::set<std::string> studies_;
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149 std::set<std::string> patients_;
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150
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151 public:
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152 virtual void Update(DicomInstanceHasher& hasher) ORTHANC_OVERRIDE
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153 {
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154 instances_.insert(hasher.HashInstance());
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155 series_.insert(hasher.HashSeries());
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156 studies_.insert(hasher.HashStudy());
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157 patients_.insert(hasher.HashPatient());
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158 }
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159
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160 virtual void Format(Json::Value& target) const ORTHANC_OVERRIDE
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161 {
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162 assert(target.type() == Json::objectValue);
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163 Json::Value resources = Json::arrayValue;
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164 FormatResources(resources, ResourceType_Instance, instances_);
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165 FormatResources(resources, ResourceType_Series, series_);
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166 FormatResources(resources, ResourceType_Study, studies_);
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167 FormatResources(resources, ResourceType_Patient, patients_);
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168 target["Resources"] = resources;
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169 }
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170
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171 virtual bool IsSingleResource() const ORTHANC_OVERRIDE
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172 {
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173 return false;
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174 }
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175 };
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176
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177
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178
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179 bool ResourceModificationJob::HandleInstance(const std::string& instance)
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180 {
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181 if (modification_.get() == NULL ||
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182 output_.get() == NULL)
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183 {
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184 throw OrthancException(ErrorCode_BadSequenceOfCalls,
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185 "No modification was provided for this job");
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186 }
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187
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188
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189 LOG(INFO) << "Modifying instance in a job: " << instance;
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190
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191
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192 /**
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193 * Retrieve the original instance from the DICOM cache.
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194 **/
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195
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196 std::unique_ptr<DicomInstanceHasher> originalHasher;
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197 std::unique_ptr<ParsedDicomFile> modified;
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198
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199 try
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200 {
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201 ServerContext::DicomCacheLocker locker(GetContext(), instance);
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202 ParsedDicomFile& original = locker.GetDicom();
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203
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204 originalHasher.reset(new DicomInstanceHasher(original.GetHasher()));
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205 modified.reset(original.Clone(true));
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206 }
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207 catch (OrthancException& e)
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208 {
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209 LOG(WARNING) << "An error occurred while executing a Modification job on instance " << instance << ": " << e.GetDetails();
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210 return false;
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211 }
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212
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213
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214 /**
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215 * Compute the resulting DICOM instance.
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216 **/
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217
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218 modification_->Apply(*modified);
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219
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220 const std::string modifiedUid = IDicomTranscoder::GetSopInstanceUid(modified->GetDcmtkObject());
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221
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222 if (transcode_)
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223 {
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224 std::set<DicomTransferSyntax> syntaxes;
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225 syntaxes.insert(transferSyntax_);
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226
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227 IDicomTranscoder::DicomImage source;
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228 source.AcquireParsed(*modified); // "modified" is invalid below this point
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229
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230 IDicomTranscoder::DicomImage transcoded;
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231 if (GetContext().Transcode(transcoded, source, syntaxes, true))
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232 {
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233 modified.reset(transcoded.ReleaseAsParsedDicomFile());
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234
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235 // Fix the SOP instance UID in order the preserve the
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236 // references between instance UIDs in the DICOM hierarchy
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237 // (the UID might have changed in the case of lossy transcoding)
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238 if (modified.get() == NULL ||
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239 modified->GetDcmtkObject().getDataset() == NULL ||
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240 !modified->GetDcmtkObject().getDataset()->putAndInsertString(
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241 DCM_SOPInstanceUID, modifiedUid.c_str(), OFTrue /* replace */).good())
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242 {
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243 throw OrthancException(ErrorCode_InternalError);
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244 }
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245 }
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246 else
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247 {
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248 LOG(WARNING) << "Cannot transcode instance, keeping original transfer syntax: " << instance;
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249 modified.reset(source.ReleaseAsParsedDicomFile());
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250 }
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251 }
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252
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253 assert(modifiedUid == IDicomTranscoder::GetSopInstanceUid(modified->GetDcmtkObject()));
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diff changeset
254
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255 std::unique_ptr<DicomInstanceToStore> toStore(DicomInstanceToStore::CreateFromParsedDicomFile(*modified));
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diff changeset
256 toStore->SetOrigin(origin_);
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257
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258
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259 /**
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260 * Prepare the metadata information to associate with the
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261 * resulting DICOM instance (AnonymizedFrom/ModifiedFrom).
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262 **/
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263
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264 DicomInstanceHasher modifiedHasher = modified->GetHasher();
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265
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266 MetadataType metadataType = (isAnonymization_ ?
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267 MetadataType_AnonymizedFrom :
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268 MetadataType_ModifiedFrom);
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269
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270 if (originalHasher->HashSeries() != modifiedHasher.HashSeries())
2642
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diff changeset
271 {
4508
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diff changeset
272 toStore->AddMetadata(ResourceType_Series, metadataType, originalHasher->HashSeries());
2642
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parents:
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273 }
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diff changeset
274
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
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parents: 2664
diff changeset
275 if (originalHasher->HashStudy() != modifiedHasher.HashStudy())
2642
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parents:
diff changeset
276 {
4508
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diff changeset
277 toStore->AddMetadata(ResourceType_Study, metadataType, originalHasher->HashStudy());
2642
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parents:
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278 }
ccc470091ea6 reorganization
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parents:
diff changeset
279
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
280 if (originalHasher->HashPatient() != modifiedHasher.HashPatient())
2642
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
281 {
4508
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parents: 4437
diff changeset
282 toStore->AddMetadata(ResourceType_Patient, metadataType, originalHasher->HashPatient());
2642
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parents:
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283 }
ccc470091ea6 reorganization
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parents:
diff changeset
284
2825
8aa6aef11b70 New configuration option "OverwriteInstances" to choose how duplicate SOPInstanceUID are handled
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2664
diff changeset
285 assert(instance == originalHasher->HashInstance());
4508
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parents: 4437
diff changeset
286 toStore->AddMetadata(ResourceType_Instance, metadataType, instance);
2642
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287
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288
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289 /**
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parents:
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290 * Store the resulting DICOM instance into the Orthanc store.
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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291 **/
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
292
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293 std::string modifiedInstance;
4796
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Alain Mazy <am@osimis.io>
parents: 4693
diff changeset
294 ServerContext::StoreResult result = GetContext().Store(modifiedInstance, *toStore, StoreInstanceMode_Default);
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Alain Mazy <am@osimis.io>
parents: 4693
diff changeset
295 if (result.GetStatus() != StoreStatus_Success)
2642
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parents:
diff changeset
296 {
2955
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parents: 2868
diff changeset
297 throw OrthancException(ErrorCode_CannotStoreInstance,
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2868
diff changeset
298 "Error while storing a modified instance " + instance);
2642
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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299 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
300
3938
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
301 /**
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parents: 3814
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302 * The assertion below will fail if automated transcoding to a
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
303 * lossy transfer syntax is enabled in the Orthanc core, and if
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
304 * the source instance is not in this transfer syntax.
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
305 **/
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3814
diff changeset
306 // assert(modifiedInstance == modifiedHasher.HashInstance());
2642
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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307
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
308 output_->Update(modifiedHasher);
2642
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parents:
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309
ccc470091ea6 reorganization
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parents:
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310 return true;
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
311 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
312
2842
ff0ed5ea9e4e trailing step in SetOfInstancesJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2825
diff changeset
313
3943
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
314 ResourceModificationJob::ResourceModificationJob(ServerContext& context) :
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
315 CleaningInstancesJob(context, true /* by default, keep source */),
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Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
316 isAnonymization_(false),
4206
171af1567473 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
317 transcode_(false),
171af1567473 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4205
diff changeset
318 transferSyntax_(DicomTransferSyntax_LittleEndianExplicit) // dummy initialization
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
319 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
320 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
321
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
322
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
323 void ResourceModificationJob::SetSingleResourceModification(DicomModification* modification,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
324 ResourceType outputLevel,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
325 bool isAnonymization)
2642
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
326 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
327 if (modification == NULL)
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
328 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
329 throw OrthancException(ErrorCode_NullPointer);
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
330 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
331 else if (IsStarted())
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
332 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
333 throw OrthancException(ErrorCode_BadSequenceOfCalls);
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
334 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
335 else
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
336 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
337 modification_.reset(modification);
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
338 output_.reset(new SingleOutput(outputLevel));
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
339 isAnonymization_ = isAnonymization;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
340 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
341 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
342
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
343
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
344 void ResourceModificationJob::SetMultipleResourcesModification(DicomModification* modification,
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
345 bool isAnonymization)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
346 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
347 if (modification == NULL)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
348 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
349 throw OrthancException(ErrorCode_NullPointer);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
350 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
351 else if (IsStarted())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
352 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
353 throw OrthancException(ErrorCode_BadSequenceOfCalls);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
354 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
355 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
356 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
357 modification_.reset(modification);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
358 output_.reset(new MultipleOutputs);
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
359 isAnonymization_ = isAnonymization;
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
360 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
361 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
362
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
363
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
364 void ResourceModificationJob::SetOrigin(const DicomInstanceOrigin& origin)
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
365 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
366 if (IsStarted())
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
367 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
368 throw OrthancException(ErrorCode_BadSequenceOfCalls);
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
369 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
370 else
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
371 {
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
372 origin_ = origin;
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
373 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
374 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
375
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
376
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
377 void ResourceModificationJob::SetOrigin(const RestApiCall& call)
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
378 {
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
379 SetOrigin(DicomInstanceOrigin::FromRest(call));
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
380 }
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
381
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
382
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
383 const DicomModification& ResourceModificationJob::GetModification() const
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
384 {
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
385 if (modification_.get() == NULL)
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
386 {
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
387 throw OrthancException(ErrorCode_BadSequenceOfCalls);
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
388 }
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
389 else
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
390 {
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
391 return *modification_;
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
392 }
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
393 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
394
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
395
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
396 DicomTransferSyntax ResourceModificationJob::GetTransferSyntax() const
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
397 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
398 if (transcode_)
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
399 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
400 return transferSyntax_;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
401 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
402 else
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
403 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
404 throw OrthancException(ErrorCode_BadSequenceOfCalls);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
405 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
406 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
407
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
408
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
409 void ResourceModificationJob::SetTranscode(DicomTransferSyntax syntax)
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
410 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
411 if (IsStarted())
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
412 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
413 throw OrthancException(ErrorCode_BadSequenceOfCalls);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
414 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
415 else
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
416 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
417 transcode_ = true;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
418 transferSyntax_ = syntax;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
419 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
420 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
421
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
422
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
423 void ResourceModificationJob::SetTranscode(const std::string& transferSyntaxUid)
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
424 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
425 DicomTransferSyntax s;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
426 if (LookupTransferSyntax(s, transferSyntaxUid))
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
427 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
428 SetTranscode(s);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
429 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
430 else
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
431 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
432 throw OrthancException(ErrorCode_BadFileFormat,
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
433 "Unknown transfer syntax UID: " + transferSyntaxUid);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
434 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
435 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
436
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
437
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
438 void ResourceModificationJob::ClearTranscode()
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
439 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
440 if (IsStarted())
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
441 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
442 throw OrthancException(ErrorCode_BadSequenceOfCalls);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
443 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
444 else
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
445 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
446 transcode_ = false;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
447 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
448 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
449
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
450
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
451 bool ResourceModificationJob::IsSingleResourceModification() const
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
452 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
453 if (modification_.get() == NULL)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
454 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
455 assert(output_.get() == NULL);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
456 throw OrthancException(ErrorCode_BadSequenceOfCalls);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
457 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
458 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
459 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
460 assert(output_.get() != NULL);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
461 return output_->IsSingleResource();
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
462 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
463 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
464
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
465
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
466 ResourceType ResourceModificationJob::GetOutputLevel() const
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
467 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
468 if (IsSingleResourceModification())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
469 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
470 assert(modification_.get() != NULL &&
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
471 output_.get() != NULL);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
472 return dynamic_cast<const SingleOutput&>(*output_).GetLevel();
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
473 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
474 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
475 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
476 // Not applicable if multiple resources
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
477 throw OrthancException(ErrorCode_BadSequenceOfCalls);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
478 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
479 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
480
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
481
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
482 void ResourceModificationJob::GetPublicContent(Json::Value& value)
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
483 {
3942
5b882ad2ffd0 "/{patients|studies|series}/.../modify": New option "KeepSource"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3938
diff changeset
484 CleaningInstancesJob::GetPublicContent(value);
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
485
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
486 value["IsAnonymization"] = isAnonymization_;
2868
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
487
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
488 if (output_.get() != NULL)
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
489 {
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
490 output_->Format(value);
abce036683cd sharing code within OrthancRestAnonymizeModify
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2842
diff changeset
491 }
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
492
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
493 if (transcode_)
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
494 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
495 value["Transcode"] = GetTransferSyntaxUid(transferSyntax_);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
496 }
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
497 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
498
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
499
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
500 static const char* MODIFICATION = "Modification";
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
501 static const char* ORIGIN = "Origin";
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
502 static const char* IS_ANONYMIZATION = "IsAnonymization";
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
503 static const char* TRANSCODE = "Transcode";
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
504 static const char* OUTPUT_LEVEL = "OutputLevel";
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
505 static const char* IS_SINGLE_RESOURCE = "IsSingleResource";
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
506
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
507
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
508 ResourceModificationJob::ResourceModificationJob(ServerContext& context,
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
509 const Json::Value& serialized) :
4223
3d6f14a05db1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4206
diff changeset
510 CleaningInstancesJob(context, serialized, true /* by default, keep source */),
3d6f14a05db1 cppcheck
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4206
diff changeset
511 transferSyntax_(DicomTransferSyntax_LittleEndianExplicit) // dummy initialization
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
512 {
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
513 assert(serialized.type() == Json::objectValue);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
514
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
515 origin_ = DicomInstanceOrigin(serialized[ORIGIN]);
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
516
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
517 if (serialized.isMember(TRANSCODE))
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
518 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
519 SetTranscode(SerializationToolbox::ReadString(serialized, TRANSCODE));
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
520 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
521 else
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
522 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
523 transcode_ = false;
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
524 }
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
525
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
526 bool isSingleResource;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
527 if (serialized.isMember(IS_SINGLE_RESOURCE))
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
528 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
529 isSingleResource = SerializationToolbox::ReadBoolean(serialized, IS_SINGLE_RESOURCE);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
530 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
531 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
532 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
533 isSingleResource = true; // Backward compatibility with Orthanc <= 1.9.3
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
534 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
535
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
536 bool isAnonymization = SerializationToolbox::ReadBoolean(serialized, IS_ANONYMIZATION);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
537 std::unique_ptr<DicomModification> modification(new DicomModification(serialized[MODIFICATION]));
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
538
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
539 if (isSingleResource)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
540 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
541 ResourceType outputLevel;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
542
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
543 if (serialized.isMember(OUTPUT_LEVEL))
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
544 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
545 // New in Orthanc 1.9.4. This fixes an *incorrect* behavior in
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
546 // Orthanc <= 1.9.3, in which "outputLevel" would be set to
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
547 // "modification->GetLevel()"
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
548 outputLevel = StringToResourceType(SerializationToolbox::ReadString(serialized, OUTPUT_LEVEL).c_str());
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
549 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
550 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
551 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
552 // Use the buggy convention from Orthanc <= 1.9.3 (which is
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
553 // the only thing we have at hand)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
554 outputLevel = modification->GetLevel();
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
555
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
556 if (outputLevel == ResourceType_Instance)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
557 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
558 // This should never happen, but as "SingleOutput" doesn't
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
559 // support instance-level anonymization, don't take any risk
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
560 // and choose an arbitrary output level
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
561 outputLevel = ResourceType_Patient;
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
562 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
563 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
564
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
565 SetSingleResourceModification(modification.release(), outputLevel, isAnonymization);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
566 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
567 else
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
568 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
569 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
570 SetMultipleResourcesModification(modification.release(), isAnonymization);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
571 }
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
572 }
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
573
2663
228e2783ce83 some jobs might not be serializable
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2648
diff changeset
574 bool ResourceModificationJob::Serialize(Json::Value& value)
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
575 {
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
576 if (modification_.get() == NULL)
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
577 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
578 throw OrthancException(ErrorCode_BadSequenceOfCalls);
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
579 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
580 else if (!CleaningInstancesJob::Serialize(value))
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
581 {
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
582 return false;
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
583 }
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
584 else
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
585 {
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
586 assert(value.type() == Json::objectValue);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
587
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
588 value[IS_ANONYMIZATION] = isAnonymization_;
3943
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
589
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
590 if (transcode_)
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
591 {
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
592 value[TRANSCODE] = GetTransferSyntaxUid(transferSyntax_);
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
593 }
b26d25d3c1c7 "/{patients|studies|series}/.../modify": New option "Transcode"
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3942
diff changeset
594
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
595 origin_.Serialize(value[ORIGIN]);
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
596
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
597 Json::Value tmp;
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
598 modification_->Serialize(tmp);
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
599 value[MODIFICATION] = tmp;
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
600
4693
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
601 // New in Orthanc 1.9.4
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
602 value[IS_SINGLE_RESOURCE] = IsSingleResourceModification();
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
603 if (IsSingleResourceModification())
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
604 {
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
605 value[OUTPUT_LEVEL] = EnumerationToString(GetOutputLevel());
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
606 }
45bce660ce3a added routes for bulk anonymization/modification
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 4508
diff changeset
607
2664
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
608 return true;
a21b244efb37 serialization of DicomModalityStoreJob, OrthancPeerStoreJob and ResourceModificationJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2663
diff changeset
609 }
2642
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
610 }
ccc470091ea6 reorganization
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
611 }