Mercurial > hg > orthanc
annotate OrthancServer/ServerIndex.cpp @ 1503:4320cfcfabef Orthanc-0.9.3
Orthanc-0.9.3
| author | Sebastien Jodogne <s.jodogne@gmail.com> |
|---|---|
| date | Fri, 07 Aug 2015 18:18:12 +0200 |
| parents | f967bdf8534e |
| children | 0586ed8897f1 |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 62 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
| 0 | 5 * |
| 6 * This program is free software: you can redistribute it and/or | |
| 7 * modify it under the terms of the GNU General Public License as | |
| 8 * published by the Free Software Foundation, either version 3 of the | |
| 9 * License, or (at your option) any later version. | |
| 136 | 10 * |
| 11 * In addition, as a special exception, the copyright holders of this | |
| 12 * program give permission to link the code of its release with the | |
| 13 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
| 14 * that use the same license as the "OpenSSL" library), and distribute | |
| 15 * the linked executables. You must obey the GNU General Public License | |
| 16 * in all respects for all of the code used other than "OpenSSL". If you | |
| 17 * modify file(s) with this exception, you may extend this exception to | |
| 18 * your version of the file(s), but you are not obligated to do so. If | |
| 19 * you do not wish to do so, delete this exception statement from your | |
| 20 * version. If you delete this exception statement from all source files | |
| 21 * in the program, then also delete it here. | |
| 0 | 22 * |
| 23 * This program is distributed in the hope that it will be useful, but | |
| 24 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 26 * General Public License for more details. | |
| 27 * | |
| 28 * You should have received a copy of the GNU General Public License | |
| 29 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 30 **/ | |
| 31 | |
| 32 | |
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33 #include "PrecompiledHeadersServer.h" |
| 0 | 34 #include "ServerIndex.h" |
| 35 | |
| 6 | 36 #ifndef NOMINMAX |
| 2 | 37 #define NOMINMAX |
| 6 | 38 #endif |
| 39 | |
| 1198 | 40 #include "ServerIndexChange.h" |
| 8 | 41 #include "EmbeddedResources.h" |
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42 #include "OrthancInitialization.h" |
| 0 | 43 #include "../Core/Toolbox.h" |
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44 #include "../Core/Logging.h" |
| 0 | 45 #include "../Core/Uuid.h" |
| 46 #include "../Core/DicomFormat/DicomArray.h" | |
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47 |
| 0 | 48 #include "FromDcmtkBridge.h" |
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49 #include "ServerContext.h" |
| 0 | 50 |
| 51 #include <boost/lexical_cast.hpp> | |
| 52 #include <stdio.h> | |
| 53 | |
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54 static const uint64_t MEGA_BYTES = 1024 * 1024; |
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55 |
| 62 | 56 namespace Orthanc |
| 0 | 57 { |
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58 class ServerIndex::Listener : public IDatabaseListener |
| 0 | 59 { |
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60 private: |
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61 struct FileToRemove |
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62 { |
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63 private: |
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64 std::string uuid_; |
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65 FileContentType type_; |
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66 |
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67 public: |
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68 FileToRemove(const FileInfo& info) : uuid_(info.GetUuid()), |
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69 type_(info.GetContentType()) |
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70 { |
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71 } |
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72 |
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73 const std::string& GetUuid() const |
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74 { |
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75 return uuid_; |
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76 } |
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77 |
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78 FileContentType GetContentType() const |
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79 { |
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80 return type_; |
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81 } |
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82 }; |
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83 |
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84 ServerContext& context_; |
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85 bool hasRemainingLevel_; |
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86 ResourceType remainingType_; |
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87 std::string remainingPublicId_; |
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88 std::list<FileToRemove> pendingFilesToRemove_; |
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89 std::list<ServerIndexChange> pendingChanges_; |
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90 uint64_t sizeOfFilesToRemove_; |
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91 bool insideTransaction_; |
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92 |
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93 void Reset() |
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94 { |
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95 sizeOfFilesToRemove_ = 0; |
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96 hasRemainingLevel_ = false; |
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97 pendingFilesToRemove_.clear(); |
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98 pendingChanges_.clear(); |
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99 } |
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100 |
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101 public: |
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102 Listener(ServerContext& context) : context_(context), |
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103 insideTransaction_(false) |
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104 { |
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105 Reset(); |
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106 assert(ResourceType_Patient < ResourceType_Study && |
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107 ResourceType_Study < ResourceType_Series && |
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108 ResourceType_Series < ResourceType_Instance); |
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109 } |
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110 |
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111 void StartTransaction() |
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112 { |
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113 Reset(); |
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114 insideTransaction_ = true; |
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115 } |
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116 |
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117 void EndTransaction() |
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118 { |
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119 insideTransaction_ = false; |
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120 } |
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121 |
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122 uint64_t GetSizeOfFilesToRemove() |
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123 { |
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124 return sizeOfFilesToRemove_; |
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125 } |
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126 |
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127 void CommitFilesToRemove() |
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128 { |
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129 for (std::list<FileToRemove>::const_iterator |
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130 it = pendingFilesToRemove_.begin(); |
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131 it != pendingFilesToRemove_.end(); ++it) |
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132 { |
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133 context_.RemoveFile(it->GetUuid(), it->GetContentType()); |
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134 } |
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135 } |
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136 |
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137 void CommitChanges() |
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138 { |
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139 for (std::list<ServerIndexChange>::const_iterator |
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140 it = pendingChanges_.begin(); |
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141 it != pendingChanges_.end(); ++it) |
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142 { |
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143 context_.SignalChange(*it); |
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144 } |
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145 } |
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146 |
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147 virtual void SignalRemainingAncestor(ResourceType parentType, |
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148 const std::string& publicId) |
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149 { |
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150 VLOG(1) << "Remaining ancestor \"" << publicId << "\" (" << parentType << ")"; |
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151 |
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152 if (hasRemainingLevel_) |
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153 { |
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154 if (parentType < remainingType_) |
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155 { |
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156 remainingType_ = parentType; |
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157 remainingPublicId_ = publicId; |
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158 } |
| 1158 | 159 } |
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160 else |
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161 { |
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162 hasRemainingLevel_ = true; |
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163 remainingType_ = parentType; |
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164 remainingPublicId_ = publicId; |
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165 } |
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166 } |
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167 |
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168 virtual void SignalFileDeleted(const FileInfo& info) |
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169 { |
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170 assert(Toolbox::IsUuid(info.GetUuid())); |
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171 pendingFilesToRemove_.push_back(FileToRemove(info)); |
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172 sizeOfFilesToRemove_ += info.GetCompressedSize(); |
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173 } |
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174 |
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175 virtual void SignalChange(const ServerIndexChange& change) |
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176 { |
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177 VLOG(1) << "Change related to resource " << change.GetPublicId() << " of type " |
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178 << EnumerationToString(change.GetResourceType()) << ": " |
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179 << EnumerationToString(change.GetChangeType()); |
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180 |
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181 if (insideTransaction_) |
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182 { |
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183 pendingChanges_.push_back(change); |
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184 } |
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185 else |
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186 { |
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187 context_.SignalChange(change); |
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188 } |
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189 } |
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190 |
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191 bool HasRemainingLevel() const |
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192 { |
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193 return hasRemainingLevel_; |
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194 } |
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195 |
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196 ResourceType GetRemainingType() const |
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197 { |
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198 assert(HasRemainingLevel()); |
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199 return remainingType_; |
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200 } |
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201 |
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202 const std::string& GetRemainingPublicId() const |
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203 { |
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204 assert(HasRemainingLevel()); |
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205 return remainingPublicId_; |
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206 } |
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207 }; |
| 0 | 208 |
| 209 | |
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210 class ServerIndex::Transaction |
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211 { |
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212 private: |
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213 ServerIndex& index_; |
| 1235 | 214 std::auto_ptr<SQLite::ITransaction> transaction_; |
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215 bool isCommitted_; |
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216 |
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217 public: |
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218 Transaction(ServerIndex& index) : |
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219 index_(index), |
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220 isCommitted_(false) |
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221 { |
| 1247 | 222 transaction_.reset(index_.db_.StartTransaction()); |
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223 transaction_->Begin(); |
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224 |
| 1270 | 225 assert(index_.currentStorageSize_ == index_.db_.GetTotalCompressedSize()); |
| 226 | |
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227 index_.listener_->StartTransaction(); |
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228 } |
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229 |
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230 ~Transaction() |
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231 { |
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232 index_.listener_->EndTransaction(); |
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233 |
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234 if (!isCommitted_) |
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235 { |
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236 transaction_->Rollback(); |
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237 } |
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238 } |
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239 |
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240 void Commit(uint64_t sizeOfAddedFiles) |
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241 { |
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242 if (!isCommitted_) |
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243 { |
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244 transaction_->Commit(); |
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245 |
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246 // We can remove the files once the SQLite transaction has |
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247 // been successfully committed. Some files might have to be |
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248 // deleted because of recycling. |
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249 index_.listener_->CommitFilesToRemove(); |
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250 |
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251 index_.currentStorageSize_ += sizeOfAddedFiles; |
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252 |
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253 assert(index_.currentStorageSize_ >= index_.listener_->GetSizeOfFilesToRemove()); |
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254 index_.currentStorageSize_ -= index_.listener_->GetSizeOfFilesToRemove(); |
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255 |
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256 // Send all the pending changes to the Orthanc plugins |
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257 index_.listener_->CommitChanges(); |
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258 |
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259 isCommitted_ = true; |
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260 } |
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261 } |
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262 }; |
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263 |
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264 |
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265 class ServerIndex::UnstableResourcePayload |
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266 { |
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267 private: |
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268 ResourceType type_; |
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269 std::string publicId_; |
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270 boost::posix_time::ptime time_; |
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271 |
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272 public: |
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273 UnstableResourcePayload() : type_(ResourceType_Instance) |
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274 { |
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275 } |
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276 |
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277 UnstableResourcePayload(Orthanc::ResourceType type, |
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278 const std::string& publicId) : |
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279 type_(type), |
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280 publicId_(publicId) |
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281 { |
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282 time_ = boost::posix_time::second_clock::local_time(); |
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283 } |
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284 |
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285 unsigned int GetAge() const |
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286 { |
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287 return (boost::posix_time::second_clock::local_time() - time_).total_seconds(); |
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288 } |
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289 |
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290 ResourceType GetResourceType() const |
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291 { |
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292 return type_; |
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293 } |
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294 |
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295 const std::string& GetPublicId() const |
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296 { |
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297 return publicId_; |
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298 } |
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299 }; |
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300 |
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301 |
| 212 | 302 bool ServerIndex::DeleteResource(Json::Value& target, |
| 0 | 303 const std::string& uuid, |
| 202 | 304 ResourceType expectedType) |
| 0 | 305 { |
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306 boost::mutex::scoped_lock lock(mutex_); |
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307 |
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308 Transaction t(*this); |
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309 |
| 202 | 310 int64_t id; |
| 311 ResourceType type; | |
| 1294 | 312 if (!db_.LookupResource(id, type, uuid) || |
| 202 | 313 expectedType != type) |
| 0 | 314 { |
| 315 return false; | |
| 316 } | |
| 202 | 317 |
| 1247 | 318 db_.DeleteResource(id); |
| 0 | 319 |
| 202 | 320 if (listener_->HasRemainingLevel()) |
| 0 | 321 { |
| 202 | 322 ResourceType type = listener_->GetRemainingType(); |
| 323 const std::string& uuid = listener_->GetRemainingPublicId(); | |
| 0 | 324 |
| 325 target["RemainingAncestor"] = Json::Value(Json::objectValue); | |
| 204 | 326 target["RemainingAncestor"]["Path"] = GetBasePath(type, uuid); |
|
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327 target["RemainingAncestor"]["Type"] = EnumerationToString(type); |
| 0 | 328 target["RemainingAncestor"]["ID"] = uuid; |
| 329 } | |
| 330 else | |
| 331 { | |
| 332 target["RemainingAncestor"] = Json::nullValue; | |
| 333 } | |
| 334 | |
|
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335 t.Commit(0); |
|
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336 |
| 0 | 337 return true; |
| 338 } | |
| 339 | |
| 340 | |
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341 void ServerIndex::FlushThread(ServerIndex* that) |
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342 { |
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343 // By default, wait for 10 seconds before flushing |
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344 unsigned int sleep = 10; |
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345 |
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346 try |
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347 { |
| 744 | 348 boost::mutex::scoped_lock lock(that->mutex_); |
| 1239 | 349 std::string sleepString; |
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350 |
| 1247 | 351 if (that->db_.LookupGlobalProperty(sleepString, GlobalProperty_FlushSleep) && |
| 1239 | 352 Toolbox::IsInteger(sleepString)) |
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353 { |
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354 sleep = boost::lexical_cast<unsigned int>(sleepString); |
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355 } |
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356 } |
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357 catch (boost::bad_lexical_cast&) |
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358 { |
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359 } |
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360 |
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361 LOG(INFO) << "Starting the database flushing thread (sleep = " << sleep << ")"; |
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362 |
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363 unsigned int count = 0; |
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364 |
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365 while (!that->done_) |
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366 { |
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367 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
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368 count++; |
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369 if (count < sleep) |
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370 { |
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371 continue; |
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372 } |
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373 |
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374 boost::mutex::scoped_lock lock(that->mutex_); |
| 1247 | 375 that->db_.FlushToDisk(); |
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376 count = 0; |
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377 } |
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378 |
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379 LOG(INFO) << "Stopping the database flushing thread"; |
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380 } |
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381 |
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382 |
| 1247 | 383 static void ComputeExpectedNumberOfInstances(IDatabaseWrapper& db, |
| 433 | 384 int64_t series, |
| 385 const DicomMap& dicomSummary) | |
| 386 { | |
| 387 try | |
| 388 { | |
| 656 | 389 const DicomValue* value; |
| 390 const DicomValue* value2; | |
| 391 | |
| 433 | 392 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGES_IN_ACQUISITION)) != NULL && |
| 393 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TEMPORAL_POSITIONS)) != NULL) | |
| 394 { | |
| 395 // Patch for series with temporal positions thanks to Will Ryder | |
| 396 int64_t imagesInAcquisition = boost::lexical_cast<int64_t>(value->AsString()); | |
| 397 int64_t countTemporalPositions = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 398 std::string expected = boost::lexical_cast<std::string>(imagesInAcquisition * countTemporalPositions); | |
| 399 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 400 } | |
| 401 | |
| 402 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_SLICES)) != NULL && | |
| 403 (value2 = dicomSummary.TestAndGetValue(DICOM_TAG_NUMBER_OF_TIME_SLICES)) != NULL) | |
| 404 { | |
| 405 // Support of Cardio-PET images | |
| 406 int64_t numberOfSlices = boost::lexical_cast<int64_t>(value->AsString()); | |
| 407 int64_t numberOfTimeSlices = boost::lexical_cast<int64_t>(value2->AsString()); | |
| 408 std::string expected = boost::lexical_cast<std::string>(numberOfSlices * numberOfTimeSlices); | |
| 409 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, expected); | |
| 410 } | |
| 411 | |
| 412 else if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_CARDIAC_NUMBER_OF_IMAGES)) != NULL) | |
| 413 { | |
| 414 db.SetMetadata(series, MetadataType_Series_ExpectedNumberOfInstances, value->AsString()); | |
| 415 } | |
| 416 } | |
| 417 catch (boost::bad_lexical_cast) | |
| 418 { | |
| 419 } | |
| 420 } | |
| 421 | |
| 422 | |
| 1237 | 423 |
| 424 | |
| 1238 | 425 bool ServerIndex::GetMetadataAsInteger(int64_t& result, |
| 1237 | 426 int64_t id, |
| 427 MetadataType type) | |
| 428 { | |
| 1238 | 429 std::string s; |
| 1247 | 430 if (!db_.LookupMetadata(s, id, type)) |
| 1237 | 431 { |
| 432 return false; | |
| 433 } | |
| 434 | |
| 435 try | |
| 436 { | |
| 1238 | 437 result = boost::lexical_cast<int64_t>(s); |
| 1237 | 438 return true; |
| 439 } | |
| 440 catch (boost::bad_lexical_cast&) | |
| 441 { | |
| 442 return false; | |
| 443 } | |
| 444 } | |
| 445 | |
| 446 | |
| 1297 | 447 void ServerIndex::LogChange(int64_t internalId, |
| 448 ChangeType changeType, | |
| 449 ResourceType resourceType, | |
| 450 const std::string& publicId) | |
| 451 { | |
| 452 ServerIndexChange change(changeType, resourceType, publicId); | |
|
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454 if (changeType <= ChangeType_INTERNAL_LastLogged) |
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455 { |
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456 db_.LogChange(internalId, change); |
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457 } |
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458 |
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459 assert(listener_.get() != NULL); |
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460 listener_->SignalChange(change); |
| 1297 | 461 } |
| 462 | |
| 1237 | 463 |
| 464 uint64_t ServerIndex::IncrementGlobalSequenceInternal(GlobalProperty property) | |
| 465 { | |
| 466 std::string oldValue; | |
| 467 | |
| 1247 | 468 if (db_.LookupGlobalProperty(oldValue, property)) |
| 1237 | 469 { |
| 470 uint64_t oldNumber; | |
| 471 | |
| 472 try | |
| 473 { | |
| 474 oldNumber = boost::lexical_cast<uint64_t>(oldValue); | |
| 1247 | 475 db_.SetGlobalProperty(property, boost::lexical_cast<std::string>(oldNumber + 1)); |
| 1237 | 476 return oldNumber + 1; |
| 477 } | |
| 478 catch (boost::bad_lexical_cast&) | |
| 479 { | |
| 480 throw OrthancException(ErrorCode_InternalError); | |
| 481 } | |
| 482 } | |
| 483 else | |
| 484 { | |
| 485 // Initialize the sequence at "1" | |
| 1247 | 486 db_.SetGlobalProperty(property, "1"); |
| 1237 | 487 return 1; |
| 488 } | |
| 489 } | |
| 490 | |
| 491 | |
| 492 | |
| 1286 | 493 void ServerIndex::SetMainDicomTags(int64_t resource, |
| 494 const DicomMap& tags) | |
| 495 { | |
| 496 DicomArray flattened(tags); | |
| 497 for (size_t i = 0; i < flattened.GetSize(); i++) | |
| 498 { | |
| 499 const DicomElement& element = flattened.GetElement(i); | |
| 500 db_.SetMainDicomTag(resource, element.GetTag(), element.GetValue().AsString()); | |
| 501 } | |
| 502 } | |
| 503 | |
| 504 | |
| 1299 | 505 int64_t ServerIndex::CreateResource(const std::string& publicId, |
| 506 ResourceType type) | |
| 507 { | |
| 508 int64_t id = db_.CreateResource(publicId, type); | |
| 509 | |
| 510 ChangeType changeType; | |
| 511 switch (type) | |
| 512 { | |
| 513 case ResourceType_Patient: | |
| 514 changeType = ChangeType_NewPatient; | |
| 515 break; | |
| 516 | |
| 517 case ResourceType_Study: | |
| 518 changeType = ChangeType_NewStudy; | |
| 519 break; | |
| 520 | |
| 521 case ResourceType_Series: | |
| 522 changeType = ChangeType_NewSeries; | |
| 523 break; | |
| 524 | |
| 525 case ResourceType_Instance: | |
| 526 changeType = ChangeType_NewInstance; | |
| 527 break; | |
| 528 | |
| 529 default: | |
| 530 throw OrthancException(ErrorCode_InternalError); | |
| 531 } | |
| 532 | |
| 533 ServerIndexChange change(changeType, type, publicId); | |
| 534 db_.LogChange(id, change); | |
|
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535 |
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536 assert(listener_.get() != NULL); |
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537 listener_->SignalChange(change); |
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538 |
| 1299 | 539 return id; |
| 540 } | |
| 541 | |
| 1286 | 542 |
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543 ServerIndex::ServerIndex(ServerContext& context, |
| 1247 | 544 IDatabaseWrapper& db) : |
|
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545 done_(false), |
| 1247 | 546 db_(db), |
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547 maximumStorageSize_(0), |
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548 maximumPatients_(0) |
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549 { |
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550 listener_.reset(new Listener(context)); |
| 1247 | 551 db_.SetListener(*listener_); |
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552 |
| 1247 | 553 currentStorageSize_ = db_.GetTotalCompressedSize(); |
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554 |
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555 // Initial recycling if the parameters have changed since the last |
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556 // execution of Orthanc |
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557 StandaloneRecycling(); |
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558 |
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559 if (db.HasFlushToDisk()) |
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560 { |
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561 flushThread_ = boost::thread(FlushThread, this); |
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562 } |
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563 |
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564 unstableResourcesMonitorThread_ = boost::thread(UnstableResourcesMonitorThread, this); |
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565 } |
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566 |
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567 |
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568 |
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569 ServerIndex::~ServerIndex() |
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570 { |
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571 if (!done_) |
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572 { |
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573 LOG(ERROR) << "INTERNAL ERROR: ServerIndex::Stop() should be invoked manually to avoid mess in the destruction order!"; |
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574 Stop(); |
|
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575 } |
| 0 | 576 } |
| 577 | |
| 578 | |
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579 |
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580 void ServerIndex::Stop() |
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581 { |
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582 if (!done_) |
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583 { |
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584 done_ = true; |
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585 |
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586 if (db_.HasFlushToDisk() && |
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587 flushThread_.joinable()) |
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588 { |
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589 flushThread_.join(); |
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590 } |
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591 |
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592 if (unstableResourcesMonitorThread_.joinable()) |
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593 { |
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594 unstableResourcesMonitorThread_.join(); |
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595 } |
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596 } |
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597 } |
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598 |
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599 |
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600 |
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601 StoreStatus ServerIndex::Store(std::map<MetadataType, std::string>& instanceMetadata, |
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602 const DicomMap& dicomSummary, |
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603 const Attachments& attachments, |
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604 const std::string& remoteAet, |
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605 const MetadataMap& metadata) |
| 0 | 606 { |
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607 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 608 |
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609 instanceMetadata.clear(); |
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610 |
| 178 | 611 DicomInstanceHasher hasher(dicomSummary); |
| 0 | 612 |
| 613 try | |
| 614 { | |
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615 Transaction t(*this); |
| 0 | 616 |
| 202 | 617 // Do nothing if the instance already exists |
| 0 | 618 { |
| 432 | 619 ResourceType type; |
| 620 int64_t tmp; | |
| 1294 | 621 if (db_.LookupResource(tmp, type, hasher.HashInstance())) |
| 432 | 622 { |
| 623 assert(type == ResourceType_Instance); | |
| 1247 | 624 db_.GetAllMetadata(instanceMetadata, tmp); |
| 432 | 625 return StoreStatus_AlreadyStored; |
| 626 } | |
| 0 | 627 } |
| 628 | |
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629 // Ensure there is enough room in the storage for the new instance |
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630 uint64_t instanceSize = 0; |
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631 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 632 it != attachments.end(); ++it) |
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633 { |
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634 instanceSize += it->GetCompressedSize(); |
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635 } |
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636 |
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637 Recycle(instanceSize, hasher.HashPatient()); |
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638 |
| 202 | 639 // Create the instance |
| 1299 | 640 int64_t instance = CreateResource(hasher.HashInstance(), ResourceType_Instance); |
| 202 | 641 |
| 642 DicomMap dicom; | |
| 643 dicomSummary.ExtractInstanceInformation(dicom); | |
| 1286 | 644 SetMainDicomTags(instance, dicom); |
| 202 | 645 |
| 432 | 646 // Detect up to which level the patient/study/series/instance |
| 647 // hierarchy must be created | |
| 648 int64_t patient = -1, study = -1, series = -1; | |
| 649 bool isNewPatient = false; | |
| 650 bool isNewStudy = false; | |
| 651 bool isNewSeries = false; | |
| 652 | |
| 0 | 653 { |
| 432 | 654 ResourceType dummy; |
| 655 | |
| 1294 | 656 if (db_.LookupResource(series, dummy, hasher.HashSeries())) |
| 432 | 657 { |
| 658 assert(dummy == ResourceType_Series); | |
| 659 // The patient, the study and the series already exist | |
| 660 | |
| 1294 | 661 bool ok = (db_.LookupResource(patient, dummy, hasher.HashPatient()) && |
| 662 db_.LookupResource(study, dummy, hasher.HashStudy())); | |
| 432 | 663 assert(ok); |
| 664 } | |
| 1294 | 665 else if (db_.LookupResource(study, dummy, hasher.HashStudy())) |
| 432 | 666 { |
| 667 assert(dummy == ResourceType_Study); | |
| 668 | |
| 669 // New series: The patient and the study already exist | |
| 670 isNewSeries = true; | |
| 671 | |
| 1294 | 672 bool ok = db_.LookupResource(patient, dummy, hasher.HashPatient()); |
| 432 | 673 assert(ok); |
| 674 } | |
| 1294 | 675 else if (db_.LookupResource(patient, dummy, hasher.HashPatient())) |
| 432 | 676 { |
| 677 assert(dummy == ResourceType_Patient); | |
| 678 | |
| 679 // New study and series: The patient already exist | |
| 680 isNewStudy = true; | |
| 681 isNewSeries = true; | |
| 682 } | |
| 683 else | |
| 684 { | |
| 685 // New patient, study and series: Nothing exists | |
| 686 isNewPatient = true; | |
| 687 isNewStudy = true; | |
| 688 isNewSeries = true; | |
| 689 } | |
| 690 } | |
| 691 | |
| 692 // Create the series if needed | |
| 693 if (isNewSeries) | |
| 694 { | |
| 1299 | 695 series = CreateResource(hasher.HashSeries(), ResourceType_Series); |
| 202 | 696 dicomSummary.ExtractSeriesInformation(dicom); |
| 1286 | 697 SetMainDicomTags(series, dicom); |
| 432 | 698 } |
| 202 | 699 |
| 432 | 700 // Create the study if needed |
| 701 if (isNewStudy) | |
| 702 { | |
| 1299 | 703 study = CreateResource(hasher.HashStudy(), ResourceType_Study); |
| 432 | 704 dicomSummary.ExtractStudyInformation(dicom); |
| 1286 | 705 SetMainDicomTags(study, dicom); |
| 432 | 706 } |
| 707 | |
| 708 // Create the patient if needed | |
| 709 if (isNewPatient) | |
| 710 { | |
| 1299 | 711 patient = CreateResource(hasher.HashPatient(), ResourceType_Patient); |
| 432 | 712 dicomSummary.ExtractPatientInformation(dicom); |
| 1286 | 713 SetMainDicomTags(patient, dicom); |
| 432 | 714 } |
| 202 | 715 |
| 432 | 716 // Create the parent-to-child links |
| 1247 | 717 db_.AttachChild(series, instance); |
| 432 | 718 |
| 719 if (isNewSeries) | |
| 720 { | |
| 1247 | 721 db_.AttachChild(study, series); |
| 0 | 722 } |
| 432 | 723 |
| 724 if (isNewStudy) | |
| 0 | 725 { |
| 1247 | 726 db_.AttachChild(patient, study); |
| 0 | 727 } |
| 728 | |
| 432 | 729 // Sanity checks |
| 730 assert(patient != -1); | |
| 731 assert(study != -1); | |
| 732 assert(series != -1); | |
| 733 assert(instance != -1); | |
| 734 | |
| 202 | 735 // Attach the files to the newly created instance |
|
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736 for (Attachments::const_iterator it = attachments.begin(); |
| 656 | 737 it != attachments.end(); ++it) |
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738 { |
| 1247 | 739 db_.AddAttachment(instance, *it); |
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740 } |
| 202 | 741 |
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742 // Attach the user-specified metadata |
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743 for (MetadataMap::const_iterator |
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744 it = metadata.begin(); it != metadata.end(); ++it) |
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745 { |
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746 switch (it->first.first) |
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747 { |
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748 case ResourceType_Patient: |
| 1247 | 749 db_.SetMetadata(patient, it->first.second, it->second); |
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diff
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|
750 break; |
|
1002
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|
751 |
|
1006
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diff
changeset
|
752 case ResourceType_Study: |
| 1247 | 753 db_.SetMetadata(study, it->first.second, it->second); |
|
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754 break; |
|
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|
755 |
|
1006
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|
756 case ResourceType_Series: |
| 1247 | 757 db_.SetMetadata(series, it->first.second, it->second); |
|
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758 break; |
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759 |
|
1006
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760 case ResourceType_Instance: |
| 1247 | 761 db_.SetMetadata(instance, it->first.second, it->second); |
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762 instanceMetadata[it->first.second] = it->second; |
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763 break; |
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764 |
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765 default: |
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766 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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767 } |
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768 } |
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769 |
|
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DicomInstanceToStore
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diff
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|
770 // Attach the auto-computed metadata for the patient/study/series levels |
| 432 | 771 std::string now = Toolbox::GetNowIsoString(); |
| 1247 | 772 db_.SetMetadata(series, MetadataType_LastUpdate, now); |
| 773 db_.SetMetadata(study, MetadataType_LastUpdate, now); | |
| 774 db_.SetMetadata(patient, MetadataType_LastUpdate, now); | |
|
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|
775 |
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776 // Attach the auto-computed metadata for the instance level, |
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777 // reflecting these additions into the input metadata map |
| 1247 | 778 db_.SetMetadata(instance, MetadataType_Instance_ReceptionDate, now); |
|
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|
779 instanceMetadata[MetadataType_Instance_ReceptionDate] = now; |
| 202 | 780 |
| 1247 | 781 db_.SetMetadata(instance, MetadataType_Instance_RemoteAet, remoteAet); |
|
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782 instanceMetadata[MetadataType_Instance_RemoteAet] = remoteAet; |
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783 |
| 202 | 784 const DicomValue* value; |
| 785 if ((value = dicomSummary.TestAndGetValue(DICOM_TAG_INSTANCE_NUMBER)) != NULL || | |
| 786 (value = dicomSummary.TestAndGetValue(DICOM_TAG_IMAGE_INDEX)) != NULL) | |
| 0 | 787 { |
| 1247 | 788 db_.SetMetadata(instance, MetadataType_Instance_IndexInSeries, value->AsString()); |
|
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789 instanceMetadata[MetadataType_Instance_IndexInSeries] = value->AsString(); |
| 0 | 790 } |
| 791 | |
|
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|
792 // Check whether the series of this new instance is now completed |
| 202 | 793 if (isNewSeries) |
| 794 { | |
| 1247 | 795 ComputeExpectedNumberOfInstances(db_, series, dicomSummary); |
| 202 | 796 } |
| 797 | |
|
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798 SeriesStatus seriesStatus = GetSeriesStatus(series); |
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799 if (seriesStatus == SeriesStatus_Complete) |
|
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800 { |
| 1237 | 801 LogChange(series, ChangeType_CompletedSeries, ResourceType_Series, hasher.HashSeries()); |
|
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802 } |
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|
803 |
|
511
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|
804 // Mark the parent resources of this instance as unstable |
|
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|
805 MarkAsUnstable(series, ResourceType_Series, hasher.HashSeries()); |
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806 MarkAsUnstable(study, ResourceType_Study, hasher.HashStudy()); |
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807 MarkAsUnstable(patient, ResourceType_Patient, hasher.HashPatient()); |
|
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808 |
|
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809 t.Commit(instanceSize); |
|
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|
810 |
| 0 | 811 return StoreStatus_Success; |
| 812 } | |
| 62 | 813 catch (OrthancException& e) |
| 0 | 814 { |
| 1247 | 815 LOG(ERROR) << "EXCEPTION [" << e.What() << "]"; |
| 0 | 816 } |
| 817 | |
| 818 return StoreStatus_Failure; | |
| 819 } | |
| 820 | |
| 821 | |
| 238 | 822 void ServerIndex::ComputeStatistics(Json::Value& target) |
| 0 | 823 { |
|
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824 boost::mutex::scoped_lock lock(mutex_); |
| 238 | 825 target = Json::objectValue; |
| 0 | 826 |
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|
827 uint64_t cs = currentStorageSize_; |
| 1247 | 828 assert(cs == db_.GetTotalCompressedSize()); |
| 829 uint64_t us = db_.GetTotalUncompressedSize(); | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
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diff
changeset
|
830 target["TotalDiskSize"] = boost::lexical_cast<std::string>(cs); |
| 238 | 831 target["TotalUncompressedSize"] = boost::lexical_cast<std::string>(us); |
|
1310
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diff
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|
832 target["TotalDiskSizeMB"] = static_cast<unsigned int>(cs / MEGA_BYTES); |
|
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diff
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|
833 target["TotalUncompressedSizeMB"] = static_cast<unsigned int>(us / MEGA_BYTES); |
| 238 | 834 |
| 1247 | 835 target["CountPatients"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Patient)); |
| 836 target["CountStudies"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Study)); | |
| 837 target["CountSeries"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Series)); | |
| 838 target["CountInstances"] = static_cast<unsigned int>(db_.GetResourceCount(ResourceType_Instance)); | |
| 238 | 839 } |
| 840 | |
|
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|
841 |
|
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|
842 |
| 585 | 843 SeriesStatus ServerIndex::GetSeriesStatus(int64_t id) |
| 199 | 844 { |
| 845 // Get the expected number of instances in this series (from the metadata) | |
| 1238 | 846 int64_t expected; |
| 847 if (!GetMetadataAsInteger(expected, id, MetadataType_Series_ExpectedNumberOfInstances)) | |
| 199 | 848 { |
| 849 return SeriesStatus_Unknown; | |
| 850 } | |
| 851 | |
| 852 // Loop over the instances of this series | |
| 853 std::list<int64_t> children; | |
| 1247 | 854 db_.GetChildrenInternalId(children, id); |
| 199 | 855 |
| 1238 | 856 std::set<int64_t> instances; |
| 199 | 857 for (std::list<int64_t>::const_iterator |
| 656 | 858 it = children.begin(); it != children.end(); ++it) |
| 199 | 859 { |
| 860 // Get the index of this instance in the series | |
| 1238 | 861 int64_t index; |
| 862 if (!GetMetadataAsInteger(index, *it, MetadataType_Instance_IndexInSeries)) | |
| 199 | 863 { |
| 864 return SeriesStatus_Unknown; | |
| 865 } | |
| 866 | |
| 656 | 867 if (!(index > 0 && index <= expected)) |
| 199 | 868 { |
| 869 // Out-of-range instance index | |
| 870 return SeriesStatus_Inconsistent; | |
| 871 } | |
| 872 | |
| 873 if (instances.find(index) != instances.end()) | |
| 874 { | |
| 875 // Twice the same instance index | |
| 876 return SeriesStatus_Inconsistent; | |
| 877 } | |
| 878 | |
| 879 instances.insert(index); | |
| 880 } | |
| 881 | |
| 1238 | 882 if (static_cast<int64_t>(instances.size()) == expected) |
| 199 | 883 { |
| 884 return SeriesStatus_Complete; | |
| 885 } | |
| 886 else | |
| 887 { | |
| 888 return SeriesStatus_Missing; | |
| 889 } | |
| 890 } | |
| 891 | |
| 892 | |
| 893 | |
| 202 | 894 void ServerIndex::MainDicomTagsToJson(Json::Value& target, |
| 895 int64_t resourceId) | |
|
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|
896 { |
|
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|
897 DicomMap tags; |
| 1247 | 898 db_.GetMainDicomTags(tags, resourceId); |
|
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|
899 target["MainDicomTags"] = Json::objectValue; |
| 1368 | 900 FromDcmtkBridge::ToJson(target["MainDicomTags"], tags, true); |
|
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|
901 } |
|
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|
902 |
|
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changeset
|
903 bool ServerIndex::LookupResource(Json::Value& result, |
| 199 | 904 const std::string& publicId, |
| 905 ResourceType expectedType) | |
|
198
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|
906 { |
|
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|
907 result = Json::objectValue; |
|
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|
908 |
|
206
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|
909 boost::mutex::scoped_lock lock(mutex_); |
| 199 | 910 |
|
198
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|
911 // Lookup for the requested resource |
|
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|
912 int64_t id; |
|
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|
913 ResourceType type; |
| 1294 | 914 if (!db_.LookupResource(id, type, publicId) || |
| 199 | 915 type != expectedType) |
|
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|
916 { |
|
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|
917 return false; |
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|
918 } |
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|
919 |
|
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|
920 // Find the parent resource (if it exists) |
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|
921 if (type != ResourceType_Patient) |
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|
922 { |
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|
923 int64_t parentId; |
| 1247 | 924 if (!db_.LookupParent(parentId, id)) |
|
198
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|
925 { |
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|
926 throw OrthancException(ErrorCode_InternalError); |
|
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|
927 } |
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|
928 |
| 1247 | 929 std::string parent = db_.GetPublicId(parentId); |
|
198
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|
930 |
|
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|
931 switch (type) |
|
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|
932 { |
|
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|
933 case ResourceType_Study: |
|
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|
934 result["ParentPatient"] = parent; |
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|
935 break; |
|
198
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|
936 |
|
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|
937 case ResourceType_Series: |
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|
938 result["ParentStudy"] = parent; |
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|
939 break; |
|
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|
940 |
|
269
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|
941 case ResourceType_Instance: |
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|
942 result["ParentSeries"] = parent; |
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|
943 break; |
|
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|
944 |
|
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|
945 default: |
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|
946 throw OrthancException(ErrorCode_InternalError); |
|
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947 } |
|
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|
948 } |
|
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|
949 |
|
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|
950 // List the children resources |
|
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|
951 std::list<std::string> children; |
| 1247 | 952 db_.GetChildrenPublicId(children, id); |
|
198
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|
953 |
|
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|
954 if (type != ResourceType_Instance) |
|
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|
955 { |
|
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|
956 Json::Value c = Json::arrayValue; |
|
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|
957 |
|
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diff
changeset
|
958 for (std::list<std::string>::const_iterator |
| 656 | 959 it = children.begin(); it != children.end(); ++it) |
|
198
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|
960 { |
|
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|
961 c.append(*it); |
|
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|
962 } |
|
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diff
changeset
|
963 |
|
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changeset
|
964 switch (type) |
|
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changeset
|
965 { |
|
269
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diff
changeset
|
966 case ResourceType_Patient: |
|
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diff
changeset
|
967 result["Studies"] = c; |
|
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diff
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|
968 break; |
|
198
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changeset
|
969 |
|
269
f6fdf5abe751
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diff
changeset
|
970 case ResourceType_Study: |
|
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diff
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|
971 result["Series"] = c; |
|
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diff
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|
972 break; |
|
198
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|
973 |
|
269
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diff
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|
974 case ResourceType_Series: |
|
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diff
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|
975 result["Instances"] = c; |
|
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diff
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|
976 break; |
|
198
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diff
changeset
|
977 |
|
269
f6fdf5abe751
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diff
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|
978 default: |
|
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|
979 throw OrthancException(ErrorCode_InternalError); |
|
198
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|
980 } |
|
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|
981 } |
|
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changeset
|
982 |
|
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diff
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|
983 // Set the resource type |
|
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|
984 switch (type) |
|
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diff
changeset
|
985 { |
|
269
f6fdf5abe751
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diff
changeset
|
986 case ResourceType_Patient: |
|
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diff
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|
987 result["Type"] = "Patient"; |
|
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diff
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|
988 break; |
|
198
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
989 |
|
269
f6fdf5abe751
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diff
changeset
|
990 case ResourceType_Study: |
|
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diff
changeset
|
991 result["Type"] = "Study"; |
|
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diff
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|
992 break; |
| 199 | 993 |
|
269
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diff
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|
994 case ResourceType_Series: |
|
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|
995 { |
|
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diff
changeset
|
996 result["Type"] = "Series"; |
|
434
ccf3a0a43dac
EnumerationDictionary
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
433
diff
changeset
|
997 result["Status"] = EnumerationToString(GetSeriesStatus(id)); |
|
198
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diff
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|
998 |
| 1238 | 999 int64_t i; |
| 1237 | 1000 if (GetMetadataAsInteger(i, id, MetadataType_Series_ExpectedNumberOfInstances)) |
| 1238 | 1001 result["ExpectedNumberOfInstances"] = static_cast<int>(i); |
|
269
f6fdf5abe751
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diff
changeset
|
1002 else |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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268
diff
changeset
|
1003 result["ExpectedNumberOfInstances"] = Json::nullValue; |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1004 |
|
269
f6fdf5abe751
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parents:
268
diff
changeset
|
1005 break; |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1006 } |
|
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1007 |
|
269
f6fdf5abe751
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268
diff
changeset
|
1008 case ResourceType_Instance: |
|
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268
diff
changeset
|
1009 { |
|
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diff
changeset
|
1010 result["Type"] = "Instance"; |
|
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268
diff
changeset
|
1011 |
|
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268
diff
changeset
|
1012 FileInfo attachment; |
| 1247 | 1013 if (!db_.LookupAttachment(attachment, id, FileContentType_Dicom)) |
|
269
f6fdf5abe751
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diff
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|
1014 { |
|
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diff
changeset
|
1015 throw OrthancException(ErrorCode_InternalError); |
|
f6fdf5abe751
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268
diff
changeset
|
1016 } |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1017 |
|
269
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diff
changeset
|
1018 result["FileSize"] = static_cast<unsigned int>(attachment.GetUncompressedSize()); |
|
f6fdf5abe751
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268
diff
changeset
|
1019 result["FileUuid"] = attachment.GetUuid(); |
|
200
9c58b2b03cf0
refactoring of read operations
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
199
diff
changeset
|
1020 |
| 1238 | 1021 int64_t i; |
| 1237 | 1022 if (GetMetadataAsInteger(i, id, MetadataType_Instance_IndexInSeries)) |
| 1238 | 1023 result["IndexInSeries"] = static_cast<int>(i); |
|
269
f6fdf5abe751
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diff
changeset
|
1024 else |
|
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diff
changeset
|
1025 result["IndexInSeries"] = Json::nullValue; |
|
198
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before refactoring of ServerIndex::GetXXX
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diff
changeset
|
1026 |
|
269
f6fdf5abe751
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diff
changeset
|
1027 break; |
|
f6fdf5abe751
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268
diff
changeset
|
1028 } |
|
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diff
changeset
|
1029 |
|
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diff
changeset
|
1030 default: |
|
f6fdf5abe751
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268
diff
changeset
|
1031 throw OrthancException(ErrorCode_InternalError); |
|
198
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1032 } |
|
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diff
changeset
|
1033 |
|
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diff
changeset
|
1034 // Record the remaining information |
|
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197
diff
changeset
|
1035 result["ID"] = publicId; |
| 202 | 1036 MainDicomTagsToJson(result, id); |
|
198
663cc6c46d0a
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diff
changeset
|
1037 |
| 315 | 1038 std::string tmp; |
| 1039 | |
| 1247 | 1040 if (db_.LookupMetadata(tmp, id, MetadataType_AnonymizedFrom)) |
| 1236 | 1041 { |
| 315 | 1042 result["AnonymizedFrom"] = tmp; |
| 1236 | 1043 } |
| 315 | 1044 |
| 1247 | 1045 if (db_.LookupMetadata(tmp, id, MetadataType_ModifiedFrom)) |
| 1236 | 1046 { |
| 315 | 1047 result["ModifiedFrom"] = tmp; |
| 1236 | 1048 } |
| 315 | 1049 |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1050 if (type == ResourceType_Patient || |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1051 type == ResourceType_Study || |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1052 type == ResourceType_Series) |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1053 { |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1054 result["IsStable"] = !unstableResources_.Contains(id); |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1055 |
| 1247 | 1056 if (db_.LookupMetadata(tmp, id, MetadataType_LastUpdate)) |
| 1236 | 1057 { |
|
1148
ac36589f699e
LastUpdate metadata is now always returned for patients, studies and series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1139
diff
changeset
|
1058 result["LastUpdate"] = tmp; |
| 1236 | 1059 } |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1060 } |
|
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1061 |
|
198
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diff
changeset
|
1062 return true; |
|
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diff
changeset
|
1063 } |
|
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diff
changeset
|
1064 |
| 0 | 1065 |
|
232
5368bbe813cf
refactoring of attachments
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parents:
231
diff
changeset
|
1066 bool ServerIndex::LookupAttachment(FileInfo& attachment, |
|
5368bbe813cf
refactoring of attachments
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231
diff
changeset
|
1067 const std::string& instanceUuid, |
| 233 | 1068 FileContentType contentType) |
| 0 | 1069 { |
|
206
4453a010d0db
flush to disk thread
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
205
diff
changeset
|
1070 boost::mutex::scoped_lock lock(mutex_); |
| 0 | 1071 |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1072 int64_t id; |
|
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1073 ResourceType type; |
| 1294 | 1074 if (!db_.LookupResource(id, type, instanceUuid)) |
|
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1075 { |
|
1113
ba5c0908600c
Refactoring of HttpOutput ("Content-Length" header is now always sent)
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1102
diff
changeset
|
1076 throw OrthancException(ErrorCode_UnknownResource); |
|
192
c56dc32266e0
refactoring getfile
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
191
diff
changeset
|
1077 } |
|
193
a1b9d1e1497b
failed attempt to compile with linux standard base
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
192
diff
changeset
|
1078 |
| 1247 | 1079 if (db_.LookupAttachment(attachment, id, contentType)) |
|
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1080 { |
| 233 | 1081 assert(attachment.GetContentType() == contentType); |
|
232
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1082 return true; |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1083 } |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1084 else |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1085 { |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1086 return false; |
|
5368bbe813cf
refactoring of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
231
diff
changeset
|
1087 } |
|
192
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1088 } |
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1089 |
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1090 |
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1091 |
| 1354 | 1092 void ServerIndex::GetAllUuids(std::list<std::string>& target, |
| 190 | 1093 ResourceType resourceType) |
| 0 | 1094 { |
| 1357 | 1095 boost::mutex::scoped_lock lock(mutex_); |
| 1096 db_.GetAllPublicIds(target, resourceType); | |
| 0 | 1097 } |
| 1098 | |
| 1099 | |
| 1244 | 1100 template <typename T> |
| 1101 static void FormatLog(Json::Value& target, | |
| 1102 const std::list<T>& log, | |
| 1103 const std::string& name, | |
| 1104 bool done, | |
| 1105 int64_t since) | |
| 1240 | 1106 { |
| 1107 Json::Value items = Json::arrayValue; | |
| 1244 | 1108 for (typename std::list<T>::const_iterator |
| 1304 | 1109 it = log.begin(); it != log.end(); ++it) |
| 1240 | 1110 { |
| 1111 Json::Value item; | |
| 1112 it->Format(item); | |
| 1113 items.append(item); | |
| 1114 } | |
| 1115 | |
| 1116 target = Json::objectValue; | |
| 1244 | 1117 target[name] = items; |
| 1240 | 1118 target["Done"] = done; |
| 1119 | |
| 1305 | 1120 int64_t last = (log.empty() ? since : log.back().GetSeq()); |
| 1240 | 1121 target["Last"] = static_cast<int>(last); |
| 1122 } | |
| 1123 | |
| 1124 | |
| 1247 | 1125 void ServerIndex::GetChanges(Json::Value& target, |
| 204 | 1126 int64_t since, |
| 0 | 1127 unsigned int maxResults) |
| 1128 { | |
| 1240 | 1129 std::list<ServerIndexChange> changes; |
| 1130 bool done; | |
| 1131 | |
| 1132 { | |
| 1133 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1134 db_.GetChanges(changes, done, since, maxResults); |
| 1240 | 1135 } |
| 1136 | |
| 1244 | 1137 FormatLog(target, changes, "Changes", done, since); |
|
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1138 } |
| 0 | 1139 |
| 1240 | 1140 |
| 1247 | 1141 void ServerIndex::GetLastChange(Json::Value& target) |
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1142 { |
| 1240 | 1143 std::list<ServerIndexChange> changes; |
| 1144 | |
| 1145 { | |
| 1146 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1147 db_.GetLastChange(changes); |
| 1240 | 1148 } |
| 1149 | |
| 1244 | 1150 FormatLog(target, changes, "Changes", true, 0); |
| 0 | 1151 } |
| 231 | 1152 |
| 1240 | 1153 |
| 231 | 1154 void ServerIndex::LogExportedResource(const std::string& publicId, |
| 1155 const std::string& remoteModality) | |
| 1156 { | |
| 1157 boost::mutex::scoped_lock lock(mutex_); | |
|
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1158 Transaction transaction(*this); |
| 231 | 1159 |
| 1160 int64_t id; | |
| 1161 ResourceType type; | |
| 1294 | 1162 if (!db_.LookupResource(id, type, publicId)) |
| 231 | 1163 { |
| 1164 throw OrthancException(ErrorCode_InternalError); | |
| 1165 } | |
| 1166 | |
| 1167 std::string patientId; | |
| 1168 std::string studyInstanceUid; | |
| 1169 std::string seriesInstanceUid; | |
| 1170 std::string sopInstanceUid; | |
| 1171 | |
| 1172 int64_t currentId = id; | |
| 1173 ResourceType currentType = type; | |
| 1174 | |
| 1175 // Iteratively go up inside the patient/study/series/instance hierarchy | |
| 1176 bool done = false; | |
| 1177 while (!done) | |
| 1178 { | |
| 1179 DicomMap map; | |
| 1247 | 1180 db_.GetMainDicomTags(map, currentId); |
| 231 | 1181 |
| 1182 switch (currentType) | |
| 1183 { | |
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1184 case ResourceType_Patient: |
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1185 patientId = map.GetValue(DICOM_TAG_PATIENT_ID).AsString(); |
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1186 done = true; |
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1187 break; |
| 231 | 1188 |
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1189 case ResourceType_Study: |
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1190 studyInstanceUid = map.GetValue(DICOM_TAG_STUDY_INSTANCE_UID).AsString(); |
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1191 currentType = ResourceType_Patient; |
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1192 break; |
| 231 | 1193 |
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1194 case ResourceType_Series: |
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1195 seriesInstanceUid = map.GetValue(DICOM_TAG_SERIES_INSTANCE_UID).AsString(); |
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1196 currentType = ResourceType_Study; |
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1197 break; |
| 231 | 1198 |
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1199 case ResourceType_Instance: |
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1200 sopInstanceUid = map.GetValue(DICOM_TAG_SOP_INSTANCE_UID).AsString(); |
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1201 currentType = ResourceType_Series; |
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1202 break; |
| 231 | 1203 |
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1204 default: |
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1205 throw OrthancException(ErrorCode_InternalError); |
| 231 | 1206 } |
| 1207 | |
| 1208 // If we have not reached the Patient level, find the parent of | |
| 1209 // the current resource | |
| 1210 if (!done) | |
| 1211 { | |
| 1247 | 1212 bool ok = db_.LookupParent(currentId, currentId); |
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1213 assert(ok); |
| 231 | 1214 } |
| 1215 } | |
| 1216 | |
| 1246 | 1217 ExportedResource resource(-1, |
| 1218 type, | |
| 1219 publicId, | |
| 1220 remoteModality, | |
| 1221 Toolbox::GetNowIsoString(), | |
| 1222 patientId, | |
| 1223 studyInstanceUid, | |
| 1224 seriesInstanceUid, | |
| 1225 sopInstanceUid); | |
|
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1226 |
| 1247 | 1227 db_.LogExportedResource(resource); |
|
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1228 transaction.Commit(0); |
| 231 | 1229 } |
| 1230 | |
| 1231 | |
| 1247 | 1232 void ServerIndex::GetExportedResources(Json::Value& target, |
| 231 | 1233 int64_t since, |
| 1234 unsigned int maxResults) | |
| 1235 { | |
| 1244 | 1236 std::list<ExportedResource> exported; |
| 1237 bool done; | |
| 1238 | |
| 1239 { | |
| 1240 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1241 db_.GetExportedResources(exported, done, since, maxResults); |
| 1244 | 1242 } |
| 1243 | |
| 1244 FormatLog(target, exported, "Exports", done, since); | |
| 231 | 1245 } |
|
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1246 |
| 1244 | 1247 |
| 1247 | 1248 void ServerIndex::GetLastExportedResource(Json::Value& target) |
|
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1249 { |
| 1244 | 1250 std::list<ExportedResource> exported; |
| 1251 | |
| 1252 { | |
| 1253 boost::mutex::scoped_lock lock(mutex_); | |
| 1247 | 1254 db_.GetLastExportedResource(exported); |
| 1244 | 1255 } |
| 1256 | |
| 1257 FormatLog(target, exported, "Exports", true, 0); | |
|
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1258 } |
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1259 |
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1260 |
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1261 bool ServerIndex::IsRecyclingNeeded(uint64_t instanceSize) |
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1262 { |
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1263 if (maximumStorageSize_ != 0) |
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1264 { |
|
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1265 uint64_t currentSize = currentStorageSize_ - listener_->GetSizeOfFilesToRemove(); |
| 1247 | 1266 assert(db_.GetTotalCompressedSize() == currentSize); |
|
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1267 |
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1268 if (currentSize + instanceSize > maximumStorageSize_) |
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1269 { |
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1270 return true; |
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1271 } |
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1272 } |
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1273 |
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1274 if (maximumPatients_ != 0) |
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1275 { |
| 1247 | 1276 uint64_t patientCount = db_.GetResourceCount(ResourceType_Patient); |
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1277 if (patientCount > maximumPatients_) |
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1278 { |
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1279 return true; |
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1280 } |
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1281 } |
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1282 |
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1283 return false; |
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1284 } |
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1285 |
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1286 |
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1287 void ServerIndex::Recycle(uint64_t instanceSize, |
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1288 const std::string& newPatientId) |
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1289 { |
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1290 if (!IsRecyclingNeeded(instanceSize)) |
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1291 { |
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1292 return; |
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1293 } |
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1294 |
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1295 // Check whether other DICOM instances from this patient are |
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1296 // already stored |
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1297 int64_t patientToAvoid; |
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1298 ResourceType type; |
| 1294 | 1299 bool hasPatientToAvoid = db_.LookupResource(patientToAvoid, type, newPatientId); |
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1300 |
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1301 if (hasPatientToAvoid && type != ResourceType_Patient) |
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1302 { |
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1303 throw OrthancException(ErrorCode_InternalError); |
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1304 } |
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1305 |
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1306 // Iteratively select patient to remove until there is enough |
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1307 // space in the DICOM store |
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1308 int64_t patientToRecycle; |
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1309 while (true) |
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1310 { |
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1311 // If other instances of this patient are already in the store, |
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1312 // we must avoid to recycle them |
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1313 bool ok = hasPatientToAvoid ? |
| 1247 | 1314 db_.SelectPatientToRecycle(patientToRecycle, patientToAvoid) : |
| 1315 db_.SelectPatientToRecycle(patientToRecycle); | |
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1316 |
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1317 if (!ok) |
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1318 { |
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1319 throw OrthancException(ErrorCode_FullStorage); |
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1320 } |
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1321 |
|
1331
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|
1322 VLOG(1) << "Recycling one patient"; |
| 1247 | 1323 db_.DeleteResource(patientToRecycle); |
|
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1324 |
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1325 if (!IsRecyclingNeeded(instanceSize)) |
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1326 { |
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1327 // OK, we're done |
|
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1328 break; |
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1329 } |
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1330 } |
|
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1331 } |
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1332 |
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1333 void ServerIndex::SetMaximumPatientCount(unsigned int count) |
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1334 { |
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1335 boost::mutex::scoped_lock lock(mutex_); |
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1336 maximumPatients_ = count; |
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1337 |
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1338 if (count == 0) |
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1339 { |
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1340 LOG(WARNING) << "No limit on the number of stored patients"; |
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1341 } |
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1342 else |
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1343 { |
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1344 LOG(WARNING) << "At most " << count << " patients will be stored"; |
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1345 } |
|
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1346 |
|
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1347 StandaloneRecycling(); |
|
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1348 } |
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1349 |
|
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|
1350 void ServerIndex::SetMaximumStorageSize(uint64_t size) |
|
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1351 { |
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|
1352 boost::mutex::scoped_lock lock(mutex_); |
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|
1353 maximumStorageSize_ = size; |
|
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1354 |
|
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1355 if (size == 0) |
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|
1356 { |
|
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|
1357 LOG(WARNING) << "No limit on the size of the storage area"; |
|
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1358 } |
|
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|
1359 else |
|
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|
1360 { |
|
440
23e5b35e3c5c
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diff
changeset
|
1361 LOG(WARNING) << "At most " << (size / MEGA_BYTES) << "MB will be used for the storage area"; |
|
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|
1362 } |
|
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|
1363 |
|
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|
1364 StandaloneRecycling(); |
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1365 } |
|
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1366 |
|
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|
1367 void ServerIndex::StandaloneRecycling() |
|
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|
1368 { |
|
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1369 // WARNING: No mutex here, do not include this as a public method |
|
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1370 Transaction t(*this); |
|
269
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|
1371 Recycle(0, ""); |
|
278
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|
1372 t.Commit(0); |
|
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|
1373 } |
|
272
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|
1374 |
|
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|
1375 |
|
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|
1376 bool ServerIndex::IsProtectedPatient(const std::string& publicId) |
|
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|
1377 { |
|
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|
1378 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1379 |
|
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|
1380 // Lookup for the requested resource |
|
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1381 int64_t id; |
|
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|
1382 ResourceType type; |
| 1294 | 1383 if (!db_.LookupResource(id, type, publicId) || |
|
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|
1384 type != ResourceType_Patient) |
|
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|
1385 { |
|
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|
1386 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1387 } |
|
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1388 |
| 1247 | 1389 return db_.IsProtectedPatient(id); |
|
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|
1390 } |
|
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|
1391 |
|
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|
1392 |
|
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|
1393 void ServerIndex::SetProtectedPatient(const std::string& publicId, |
|
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|
1394 bool isProtected) |
|
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|
1395 { |
|
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|
1396 boost::mutex::scoped_lock lock(mutex_); |
|
1310
61ce8147f30d
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|
1397 Transaction transaction(*this); |
|
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|
1398 |
|
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|
1399 // Lookup for the requested resource |
|
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|
1400 int64_t id; |
|
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|
1401 ResourceType type; |
| 1294 | 1402 if (!db_.LookupResource(id, type, publicId) || |
|
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|
1403 type != ResourceType_Patient) |
|
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|
1404 { |
|
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|
1405 throw OrthancException(ErrorCode_ParameterOutOfRange); |
|
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1406 } |
|
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1407 |
| 1247 | 1408 db_.SetProtectedPatient(id, isProtected); |
|
1310
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|
1409 transaction.Commit(0); |
|
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1410 |
|
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1411 if (isProtected) |
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1412 LOG(INFO) << "Patient " << publicId << " has been protected"; |
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1413 else |
|
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|
1414 LOG(INFO) << "Patient " << publicId << " has been unprotected"; |
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1415 } |
|
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1416 |
| 304 | 1417 |
|
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|
1418 void ServerIndex::GetChildren(std::list<std::string>& result, |
|
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|
1419 const std::string& publicId) |
|
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1420 { |
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|
1421 result.clear(); |
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1422 |
|
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|
1423 boost::mutex::scoped_lock lock(mutex_); |
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1424 |
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|
1425 ResourceType type; |
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|
1426 int64_t resource; |
| 1294 | 1427 if (!db_.LookupResource(resource, type, publicId)) |
|
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|
1428 { |
|
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|
1429 throw OrthancException(ErrorCode_UnknownResource); |
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1430 } |
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1431 |
|
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|
1432 if (type == ResourceType_Instance) |
|
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|
1433 { |
|
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|
1434 // An instance cannot have a child |
|
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|
1435 throw OrthancException(ErrorCode_BadParameterType); |
|
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|
1436 } |
|
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|
1437 |
|
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|
1438 std::list<int64_t> tmp; |
| 1247 | 1439 db_.GetChildrenInternalId(tmp, resource); |
|
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|
1440 |
|
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|
1441 for (std::list<int64_t>::const_iterator |
|
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|
1442 it = tmp.begin(); it != tmp.end(); ++it) |
|
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|
1443 { |
| 1247 | 1444 result.push_back(db_.GetPublicId(*it)); |
|
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1445 } |
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1446 } |
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1447 |
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1448 |
| 304 | 1449 void ServerIndex::GetChildInstances(std::list<std::string>& result, |
| 1450 const std::string& publicId) | |
| 1451 { | |
| 1452 result.clear(); | |
| 1453 | |
| 1454 boost::mutex::scoped_lock lock(mutex_); | |
| 1455 | |
| 1456 ResourceType type; | |
| 1457 int64_t top; | |
| 1294 | 1458 if (!db_.LookupResource(top, type, publicId)) |
| 304 | 1459 { |
| 1460 throw OrthancException(ErrorCode_UnknownResource); | |
| 1461 } | |
| 1462 | |
| 1463 if (type == ResourceType_Instance) | |
| 1464 { | |
| 1465 // The resource is already an instance: Do not go down the hierarchy | |
| 1466 result.push_back(publicId); | |
| 1467 return; | |
| 1468 } | |
| 1469 | |
| 1470 std::stack<int64_t> toExplore; | |
| 1471 toExplore.push(top); | |
| 1472 | |
| 1473 std::list<int64_t> tmp; | |
| 1474 | |
| 1475 while (!toExplore.empty()) | |
| 1476 { | |
| 1477 // Get the internal ID of the current resource | |
| 1478 int64_t resource = toExplore.top(); | |
| 1479 toExplore.pop(); | |
| 1480 | |
| 1247 | 1481 if (db_.GetResourceType(resource) == ResourceType_Instance) |
| 304 | 1482 { |
| 1247 | 1483 result.push_back(db_.GetPublicId(resource)); |
| 304 | 1484 } |
| 1485 else | |
| 1486 { | |
| 1487 // Tag all the children of this resource as to be explored | |
| 1247 | 1488 db_.GetChildrenInternalId(tmp, resource); |
| 304 | 1489 for (std::list<int64_t>::const_iterator |
| 656 | 1490 it = tmp.begin(); it != tmp.end(); ++it) |
| 304 | 1491 { |
| 1492 toExplore.push(*it); | |
| 1493 } | |
| 1494 } | |
| 1495 } | |
| 1496 } | |
| 1497 | |
|
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1498 |
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1499 void ServerIndex::SetMetadata(const std::string& publicId, |
|
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1500 MetadataType type, |
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1501 const std::string& value) |
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1502 { |
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1503 boost::mutex::scoped_lock lock(mutex_); |
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1504 |
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1505 ResourceType rtype; |
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1506 int64_t id; |
| 1294 | 1507 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1508 { |
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1509 throw OrthancException(ErrorCode_UnknownResource); |
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1510 } |
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1511 |
| 1247 | 1512 db_.SetMetadata(id, type, value); |
|
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1513 } |
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1514 |
| 438 | 1515 |
| 1516 void ServerIndex::DeleteMetadata(const std::string& publicId, | |
| 1517 MetadataType type) | |
| 1518 { | |
| 1519 boost::mutex::scoped_lock lock(mutex_); | |
| 1520 | |
| 1521 ResourceType rtype; | |
| 1522 int64_t id; | |
| 1294 | 1523 if (!db_.LookupResource(id, rtype, publicId)) |
| 438 | 1524 { |
| 1525 throw OrthancException(ErrorCode_UnknownResource); | |
| 1526 } | |
| 1527 | |
| 1247 | 1528 db_.DeleteMetadata(id, type); |
| 438 | 1529 } |
| 1530 | |
| 1531 | |
|
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|
1532 bool ServerIndex::LookupMetadata(std::string& target, |
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1533 const std::string& publicId, |
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1534 MetadataType type) |
|
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1535 { |
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|
1536 boost::mutex::scoped_lock lock(mutex_); |
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1537 |
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|
1538 ResourceType rtype; |
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1539 int64_t id; |
| 1294 | 1540 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1541 { |
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|
1542 throw OrthancException(ErrorCode_UnknownResource); |
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1543 } |
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1544 |
| 1247 | 1545 return db_.LookupMetadata(target, id, type); |
|
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1546 } |
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1547 |
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1548 |
| 739 | 1549 void ServerIndex::ListAvailableMetadata(std::list<MetadataType>& target, |
|
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1550 const std::string& publicId) |
|
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|
1551 { |
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1552 boost::mutex::scoped_lock lock(mutex_); |
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1553 |
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1554 ResourceType rtype; |
|
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|
1555 int64_t id; |
| 1294 | 1556 if (!db_.LookupResource(id, rtype, publicId)) |
|
436
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1557 { |
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1558 throw OrthancException(ErrorCode_UnknownResource); |
|
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1559 } |
|
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|
1560 |
| 1247 | 1561 db_.ListAvailableMetadata(target, id); |
|
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1562 } |
|
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|
1563 |
|
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1564 |
|
697
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|
1565 void ServerIndex::ListAvailableAttachments(std::list<FileContentType>& target, |
|
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|
1566 const std::string& publicId, |
|
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|
1567 ResourceType expectedType) |
|
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|
1568 { |
|
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|
1569 boost::mutex::scoped_lock lock(mutex_); |
|
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|
1570 |
|
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|
1571 ResourceType type; |
|
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|
1572 int64_t id; |
| 1294 | 1573 if (!db_.LookupResource(id, type, publicId) || |
|
697
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|
1574 expectedType != type) |
|
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|
1575 { |
|
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|
1576 throw OrthancException(ErrorCode_UnknownResource); |
|
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|
1577 } |
|
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1578 |
| 1247 | 1579 db_.ListAvailableAttachments(target, id); |
|
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|
1580 } |
|
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|
1581 |
|
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|
1582 |
|
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1583 bool ServerIndex::LookupParent(std::string& target, |
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1584 const std::string& publicId) |
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1585 { |
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1586 boost::mutex::scoped_lock lock(mutex_); |
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1587 |
|
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1588 ResourceType type; |
|
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1589 int64_t id; |
| 1294 | 1590 if (!db_.LookupResource(id, type, publicId)) |
|
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1591 { |
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1592 throw OrthancException(ErrorCode_UnknownResource); |
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1593 } |
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1594 |
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|
1595 int64_t parentId; |
| 1247 | 1596 if (db_.LookupParent(parentId, id)) |
|
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1597 { |
| 1247 | 1598 target = db_.GetPublicId(parentId); |
|
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1599 return true; |
|
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1600 } |
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|
1601 else |
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1602 { |
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1603 return false; |
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1604 } |
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1605 } |
| 310 | 1606 |
| 1607 | |
| 1608 uint64_t ServerIndex::IncrementGlobalSequence(GlobalProperty sequence) | |
| 1609 { | |
| 1610 boost::mutex::scoped_lock lock(mutex_); | |
|
1310
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1611 Transaction transaction(*this); |
| 311 | 1612 |
| 1237 | 1613 uint64_t seq = IncrementGlobalSequenceInternal(sequence); |
|
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1614 transaction.Commit(0); |
| 311 | 1615 |
| 1616 return seq; | |
| 310 | 1617 } |
| 315 | 1618 |
| 1619 | |
| 1620 | |
| 1621 void ServerIndex::LogChange(ChangeType changeType, | |
| 1622 const std::string& publicId) | |
| 1623 { | |
| 1624 boost::mutex::scoped_lock lock(mutex_); | |
|
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1625 Transaction transaction(*this); |
| 315 | 1626 |
| 1627 int64_t id; | |
| 1628 ResourceType type; | |
| 1294 | 1629 if (!db_.LookupResource(id, type, publicId)) |
| 315 | 1630 { |
| 1631 throw OrthancException(ErrorCode_UnknownResource); | |
| 1632 } | |
| 1633 | |
| 1237 | 1634 LogChange(id, changeType, type, publicId); |
|
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|
1635 transaction.Commit(0); |
| 315 | 1636 } |
|
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1637 |
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1638 |
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|
1639 void ServerIndex::DeleteChanges() |
|
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1640 { |
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|
1641 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1642 db_.ClearChanges(); |
|
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1643 } |
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1644 |
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|
1645 void ServerIndex::DeleteExportedResources() |
|
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1646 { |
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|
1647 boost::mutex::scoped_lock lock(mutex_); |
| 1286 | 1648 db_.ClearExportedResources(); |
|
413
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diff
changeset
|
1649 } |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1650 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1651 |
| 646 | 1652 void ServerIndex::GetStatisticsInternal(/* out */ uint64_t& compressedSize, |
| 1653 /* out */ uint64_t& uncompressedSize, | |
| 1654 /* out */ unsigned int& countStudies, | |
| 1655 /* out */ unsigned int& countSeries, | |
| 1656 /* out */ unsigned int& countInstances, | |
| 1657 /* in */ int64_t id, | |
| 1658 /* in */ ResourceType type) | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1659 { |
| 646 | 1660 std::stack<int64_t> toExplore; |
| 1661 toExplore.push(id); | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1662 |
| 646 | 1663 countInstances = 0; |
| 1664 countSeries = 0; | |
| 1665 countStudies = 0; | |
| 1666 compressedSize = 0; | |
| 1667 uncompressedSize = 0; | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1668 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1669 while (!toExplore.empty()) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1670 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1671 // Get the internal ID of the current resource |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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diff
changeset
|
1672 int64_t resource = toExplore.top(); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1673 toExplore.pop(); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1674 |
| 1247 | 1675 ResourceType thisType = db_.GetResourceType(resource); |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1676 |
|
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1677 std::list<FileContentType> f; |
| 1247 | 1678 db_.ListAvailableAttachments(f, resource); |
|
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1679 |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1680 for (std::list<FileContentType>::const_iterator |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1681 it = f.begin(); it != f.end(); ++it) |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1682 { |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1683 FileInfo attachment; |
| 1247 | 1684 if (db_.LookupAttachment(attachment, resource, *it)) |
|
702
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1685 { |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1686 compressedSize += attachment.GetCompressedSize(); |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1687 uncompressedSize += attachment.GetUncompressedSize(); |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1688 } |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1689 } |
|
7592a48e97e4
delete custom attachment
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
701
diff
changeset
|
1690 |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1691 if (thisType == ResourceType_Instance) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1692 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1693 countInstances++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1694 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1695 else |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1696 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1697 switch (thisType) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1698 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1699 case ResourceType_Study: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1700 countStudies++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1701 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1702 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1703 case ResourceType_Series: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1704 countSeries++; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1705 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1706 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1707 default: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1708 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1709 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1710 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1711 // Tag all the children of this resource as to be explored |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1712 std::list<int64_t> tmp; |
| 1247 | 1713 db_.GetChildrenInternalId(tmp, resource); |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1714 for (std::list<int64_t>::const_iterator |
| 656 | 1715 it = tmp.begin(); it != tmp.end(); ++it) |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1716 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1717 toExplore.push(*it); |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1718 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1719 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1720 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1721 |
| 646 | 1722 if (countStudies == 0) |
| 1723 { | |
| 1724 countStudies = 1; | |
| 1725 } | |
| 1726 | |
| 1727 if (countSeries == 0) | |
| 1728 { | |
| 1729 countSeries = 1; | |
| 1730 } | |
| 1731 } | |
| 1732 | |
| 1733 | |
| 1734 | |
| 1735 void ServerIndex::GetStatistics(Json::Value& target, | |
| 1736 const std::string& publicId) | |
| 1737 { | |
| 1738 boost::mutex::scoped_lock lock(mutex_); | |
| 1739 | |
| 1740 ResourceType type; | |
| 1741 int64_t top; | |
| 1294 | 1742 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1743 { |
| 1744 throw OrthancException(ErrorCode_UnknownResource); | |
| 1745 } | |
| 1746 | |
| 1747 uint64_t uncompressedSize; | |
| 1748 uint64_t compressedSize; | |
| 1749 unsigned int countStudies; | |
| 1750 unsigned int countSeries; | |
| 1751 unsigned int countInstances; | |
| 1752 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1753 countSeries, countInstances, top, type); | |
| 1754 | |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1755 target = Json::objectValue; |
|
23e5b35e3c5c
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1756 target["DiskSize"] = boost::lexical_cast<std::string>(compressedSize); |
|
1310
61ce8147f30d
custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1306
diff
changeset
|
1757 target["DiskSizeMB"] = static_cast<unsigned int>(compressedSize / MEGA_BYTES); |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1758 target["UncompressedSize"] = boost::lexical_cast<std::string>(uncompressedSize); |
|
1310
61ce8147f30d
custom database back-end
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
1306
diff
changeset
|
1759 target["UncompressedSizeMB"] = static_cast<unsigned int>(uncompressedSize / MEGA_BYTES); |
|
440
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1760 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1761 switch (type) |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1762 { |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1763 // Do NOT add "break" below this point! |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1764 case ResourceType_Patient: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1765 target["CountStudies"] = countStudies; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1766 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1767 case ResourceType_Study: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1768 target["CountSeries"] = countSeries; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1769 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1770 case ResourceType_Series: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1771 target["CountInstances"] = countInstances; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1772 |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
438
diff
changeset
|
1773 case ResourceType_Instance: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
1774 default: |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
1775 break; |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
1776 } |
|
23e5b35e3c5c
statistics for patient/studies/series/instances
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parents:
438
diff
changeset
|
1777 } |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1778 |
|
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1779 |
| 646 | 1780 void ServerIndex::GetStatistics(/* out */ uint64_t& compressedSize, |
| 1781 /* out */ uint64_t& uncompressedSize, | |
| 1782 /* out */ unsigned int& countStudies, | |
| 1783 /* out */ unsigned int& countSeries, | |
| 1784 /* out */ unsigned int& countInstances, | |
| 1785 const std::string& publicId) | |
| 1786 { | |
| 1787 boost::mutex::scoped_lock lock(mutex_); | |
| 1788 | |
| 1789 ResourceType type; | |
| 1790 int64_t top; | |
| 1294 | 1791 if (!db_.LookupResource(top, type, publicId)) |
| 646 | 1792 { |
| 1793 throw OrthancException(ErrorCode_UnknownResource); | |
| 1794 } | |
| 1795 | |
| 1796 GetStatisticsInternal(compressedSize, uncompressedSize, countStudies, | |
| 1797 countSeries, countInstances, top, type); | |
| 1798 } | |
| 1799 | |
| 1800 | |
|
511
3b735fdf320b
monitoring of stable patients/studies/series
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
440
diff
changeset
|
1801 void ServerIndex::UnstableResourcesMonitorThread(ServerIndex* that) |
|
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1802 { |
|
810
401a9633e492
configuration into a namespace
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
744
diff
changeset
|
1803 int stableAge = Configuration::GetGlobalIntegerParameter("StableAge", 60); |
|
511
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parents:
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diff
changeset
|
1804 if (stableAge <= 0) |
|
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monitoring of stable patients/studies/series
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parents:
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diff
changeset
|
1805 { |
|
3b735fdf320b
monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1806 stableAge = 60; |
|
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parents:
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diff
changeset
|
1807 } |
|
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440
diff
changeset
|
1808 |
|
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monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1809 LOG(INFO) << "Starting the monitor for stable resources (stable age = " << stableAge << ")"; |
|
3b735fdf320b
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parents:
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diff
changeset
|
1810 |
|
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monitoring of stable patients/studies/series
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parents:
440
diff
changeset
|
1811 while (!that->done_) |
|
3b735fdf320b
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parents:
440
diff
changeset
|
1812 { |
|
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parents:
440
diff
changeset
|
1813 // Check for stable resources each second |
|
3b735fdf320b
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parents:
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diff
changeset
|
1814 boost::this_thread::sleep(boost::posix_time::seconds(1)); |
|
3b735fdf320b
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parents:
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diff
changeset
|
1815 |
|
3b735fdf320b
monitoring of stable patients/studies/series
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1816 boost::mutex::scoped_lock lock(that->mutex_); |
| 513 | 1817 |
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1818 while (!that->unstableResources_.IsEmpty() && |
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1819 that->unstableResources_.GetOldestPayload().GetAge() > static_cast<unsigned int>(stableAge)) |
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1820 { |
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1821 // This DICOM resource has not received any new instance for |
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1822 // some time. It can be considered as stable. |
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1823 |
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1824 UnstableResourcePayload payload; |
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1825 int64_t id = that->unstableResources_.RemoveOldest(payload); |
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1826 |
| 513 | 1827 // Ensure that the resource is still existing before logging the change |
| 1247 | 1828 if (that->db_.IsExistingResource(id)) |
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1829 { |
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1830 switch (payload.GetResourceType()) |
| 513 | 1831 { |
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1832 case ResourceType_Patient: |
| 1237 | 1833 that->LogChange(id, ChangeType_StablePatient, ResourceType_Patient, payload.GetPublicId()); |
| 513 | 1834 break; |
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1835 |
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1836 case ResourceType_Study: |
| 1237 | 1837 that->LogChange(id, ChangeType_StableStudy, ResourceType_Study, payload.GetPublicId()); |
| 513 | 1838 break; |
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1839 |
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1840 case ResourceType_Series: |
| 1237 | 1841 that->LogChange(id, ChangeType_StableSeries, ResourceType_Series, payload.GetPublicId()); |
| 513 | 1842 break; |
| 1843 | |
| 1844 default: | |
| 1845 throw OrthancException(ErrorCode_InternalError); | |
| 1846 } | |
| 1847 | |
| 1848 //LOG(INFO) << "Stable resource: " << EnumerationToString(payload.type_) << " " << id; | |
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1849 } |
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1850 } |
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1851 } |
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1852 |
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1853 LOG(INFO) << "Closing the monitor thread for stable resources"; |
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1854 } |
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1855 |
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1856 |
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1857 void ServerIndex::MarkAsUnstable(int64_t id, |
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1858 Orthanc::ResourceType type, |
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1859 const std::string& publicId) |
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1860 { |
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1861 // WARNING: Before calling this method, "mutex_" must be locked. |
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1862 |
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1863 assert(type == Orthanc::ResourceType_Patient || |
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1864 type == Orthanc::ResourceType_Study || |
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1865 type == Orthanc::ResourceType_Series); |
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1866 |
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1867 UnstableResourcePayload payload(type, publicId); |
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1868 unstableResources_.AddOrMakeMostRecent(id, payload); |
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1869 //LOG(INFO) << "Unstable resource: " << EnumerationToString(type) << " " << id; |
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1870 |
| 1237 | 1871 LogChange(id, ChangeType_NewChildInstance, type, publicId); |
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1872 } |
| 521 | 1873 |
| 1874 | |
| 1875 | |
| 1162 | 1876 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1877 const DicomTag& tag, | |
| 1878 const std::string& value, | |
| 1879 ResourceType type) | |
| 615 | 1880 { |
| 1881 result.clear(); | |
| 1882 | |
| 1883 boost::mutex::scoped_lock lock(mutex_); | |
| 1884 | |
| 1885 std::list<int64_t> id; | |
| 1247 | 1886 db_.LookupIdentifier(id, tag, value); |
| 615 | 1887 |
| 1888 for (std::list<int64_t>::const_iterator | |
| 656 | 1889 it = id.begin(); it != id.end(); ++it) |
| 615 | 1890 { |
| 1247 | 1891 if (db_.GetResourceType(*it) == type) |
| 615 | 1892 { |
| 1247 | 1893 result.push_back(db_.GetPublicId(*it)); |
| 615 | 1894 } |
| 1895 } | |
| 1896 } | |
| 1897 | |
| 1898 | |
| 1162 | 1899 void ServerIndex::LookupIdentifier(std::list<std::string>& result, |
| 1900 const DicomTag& tag, | |
| 1901 const std::string& value) | |
| 521 | 1902 { |
| 1903 result.clear(); | |
| 1904 | |
| 1905 boost::mutex::scoped_lock lock(mutex_); | |
| 1906 | |
| 1907 std::list<int64_t> id; | |
| 1247 | 1908 db_.LookupIdentifier(id, tag, value); |
| 521 | 1909 |
| 1910 for (std::list<int64_t>::const_iterator | |
| 656 | 1911 it = id.begin(); it != id.end(); ++it) |
| 521 | 1912 { |
| 1247 | 1913 result.push_back(db_.GetPublicId(*it)); |
| 521 | 1914 } |
| 1915 } | |
| 1916 | |
| 1917 | |
| 1162 | 1918 void ServerIndex::LookupIdentifier(std::list< std::pair<ResourceType, std::string> >& result, |
| 1919 const std::string& value) | |
| 521 | 1920 { |
| 1921 result.clear(); | |
| 1922 | |
| 1923 boost::mutex::scoped_lock lock(mutex_); | |
| 1924 | |
| 1925 std::list<int64_t> id; | |
| 1247 | 1926 db_.LookupIdentifier(id, value); |
| 521 | 1927 |
| 1928 for (std::list<int64_t>::const_iterator | |
| 656 | 1929 it = id.begin(); it != id.end(); ++it) |
| 521 | 1930 { |
| 1247 | 1931 result.push_back(std::make_pair(db_.GetResourceType(*it), |
| 1932 db_.GetPublicId(*it))); | |
| 521 | 1933 } |
| 1934 } | |
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1935 |
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1936 |
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1937 StoreStatus ServerIndex::AddAttachment(const FileInfo& attachment, |
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1938 const std::string& publicId) |
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1939 { |
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1940 boost::mutex::scoped_lock lock(mutex_); |
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1941 |
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1942 Transaction t(*this); |
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1943 |
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1944 ResourceType resourceType; |
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1945 int64_t resourceId; |
| 1294 | 1946 if (!db_.LookupResource(resourceId, resourceType, publicId)) |
|
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1947 { |
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1948 return StoreStatus_Failure; // Inexistent resource |
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1949 } |
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1950 |
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1951 // Remove possible previous attachment |
| 1247 | 1952 db_.DeleteAttachment(resourceId, attachment.GetContentType()); |
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1953 |
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1954 // Locate the patient of the target resource |
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1955 int64_t patientId = resourceId; |
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1956 for (;;) |
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1957 { |
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1958 int64_t parent; |
| 1247 | 1959 if (db_.LookupParent(parent, patientId)) |
|
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1960 { |
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1961 // We have not reached the patient level yet |
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1962 patientId = parent; |
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1963 } |
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1964 else |
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1965 { |
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1966 // We have reached the patient level |
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1967 break; |
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1968 } |
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1969 } |
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1970 |
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1971 // Possibly apply the recycling mechanism while preserving this patient |
| 1247 | 1972 assert(db_.GetResourceType(patientId) == ResourceType_Patient); |
| 1973 Recycle(attachment.GetCompressedSize(), db_.GetPublicId(patientId)); | |
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1974 |
| 1247 | 1975 db_.AddAttachment(resourceId, attachment); |
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1976 |
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1977 t.Commit(attachment.GetCompressedSize()); |
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1978 |
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1979 return StoreStatus_Success; |
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1980 } |
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1981 |
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1982 |
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1983 void ServerIndex::DeleteAttachment(const std::string& publicId, |
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1984 FileContentType type) |
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1985 { |
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1986 boost::mutex::scoped_lock lock(mutex_); |
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1987 Transaction t(*this); |
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1988 |
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1989 ResourceType rtype; |
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1990 int64_t id; |
| 1294 | 1991 if (!db_.LookupResource(id, rtype, publicId)) |
|
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1992 { |
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1993 throw OrthancException(ErrorCode_UnknownResource); |
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1994 } |
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1995 |
| 1247 | 1996 db_.DeleteAttachment(id, type); |
|
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1997 |
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1998 t.Commit(0); |
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1999 } |
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2000 |
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2001 |
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1002
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2002 bool ServerIndex::GetMetadata(Json::Value& target, |
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2003 const std::string& publicId) |
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2004 { |
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2005 boost::mutex::scoped_lock lock(mutex_); |
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2006 |
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2007 target = Json::objectValue; |
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2008 |
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2009 ResourceType type; |
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2010 int64_t id; |
| 1294 | 2011 if (!db_.LookupResource(id, type, publicId)) |
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2012 { |
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2013 return false; |
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2014 } |
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2015 |
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2016 std::list<MetadataType> metadata; |
| 1247 | 2017 db_.ListAvailableMetadata(metadata, id); |
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2018 |
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2019 for (std::list<MetadataType>::const_iterator |
| 1304 | 2020 it = metadata.begin(); it != metadata.end(); ++it) |
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2021 { |
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2022 std::string key = EnumerationToString(*it); |
| 1238 | 2023 |
| 2024 std::string value; | |
| 1247 | 2025 if (!db_.LookupMetadata(value, id, *it)) |
| 1238 | 2026 { |
| 2027 value.clear(); | |
| 2028 } | |
| 2029 | |
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2030 target[key] = value; |
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2031 } |
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2032 |
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2033 return true; |
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2034 } |
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2035 |
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2036 |
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1249
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2037 void ServerIndex::SetGlobalProperty(GlobalProperty property, |
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2038 const std::string& value) |
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2039 { |
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2040 boost::mutex::scoped_lock lock(mutex_); |
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2041 db_.SetGlobalProperty(property, value); |
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2042 } |
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2043 |
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2044 |
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2045 std::string ServerIndex::GetGlobalProperty(GlobalProperty property, |
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2046 const std::string& defaultValue) |
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2047 { |
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2048 boost::mutex::scoped_lock lock(mutex_); |
| 1239 | 2049 |
| 2050 std::string value; | |
| 1247 | 2051 if (db_.LookupGlobalProperty(value, property)) |
| 1239 | 2052 { |
| 2053 return value; | |
| 2054 } | |
| 2055 else | |
| 2056 { | |
| 2057 return defaultValue; | |
| 2058 } | |
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2059 } |
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2060 |
| 1352 | 2061 |
| 2062 bool ServerIndex::GetMainDicomTags(DicomMap& result, | |
| 2063 const std::string& publicId, | |
| 2064 ResourceType expectedType) | |
| 2065 { | |
| 2066 result.Clear(); | |
| 2067 | |
| 2068 boost::mutex::scoped_lock lock(mutex_); | |
| 2069 | |
| 2070 // Lookup for the requested resource | |
| 2071 int64_t id; | |
| 2072 ResourceType type; | |
| 2073 if (!db_.LookupResource(id, type, publicId) || | |
| 2074 type != expectedType) | |
| 2075 { | |
| 2076 return false; | |
| 2077 } | |
| 2078 else | |
| 2079 { | |
| 2080 db_.GetMainDicomTags(result, id); | |
| 2081 return true; | |
| 2082 } | |
| 2083 } | |
| 0 | 2084 } |