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annotate OrthancServer/Sources/OrthancRestApi/OrthancRestArchive.cpp @ 4583:42a846166fa3 db-changes

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removing link to ServerIndex in ReadWriteTransaction
author Sebastien Jodogne <s.jodogne@gmail.com>
date Tue, 09 Mar 2021 15:37:47 +0100
parents d9473bd5ed43
children cdab941fe17d
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../PrecompiledHeadersServer.h"
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35 #include "OrthancRestApi.h"
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36
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37 #include "../../../OrthancFramework/Sources/HttpServer/FilesystemHttpSender.h"
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38 #include "../../../OrthancFramework/Sources/OrthancException.h"
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39 #include "../../../OrthancFramework/Sources/SerializationToolbox.h"
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40 #include "../OrthancConfiguration.h"
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41 #include "../ServerContext.h"
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42 #include "../ServerJobs/ArchiveJob.h"
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43
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44
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45 namespace Orthanc
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46 {
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47 static const char* const KEY_RESOURCES = "Resources";
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48 static const char* const KEY_EXTENDED = "Extended";
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49 static const char* const KEY_TRANSCODE = "Transcode";
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50
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51 static void AddResourcesOfInterestFromArray(ArchiveJob& job,
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52 const Json::Value& resources)
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53 {
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54 if (resources.type() != Json::arrayValue)
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55 {
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56 throw OrthancException(ErrorCode_BadFileFormat,
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57 "Expected a list of strings (Orthanc identifiers)");
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58 }
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59
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60 for (Json::Value::ArrayIndex i = 0; i < resources.size(); i++)
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61 {
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62 if (resources[i].type() != Json::stringValue)
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63 {
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64 throw OrthancException(ErrorCode_BadFileFormat,
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65 "Expected a list of strings (Orthanc identifiers)");
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66 }
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67 else
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68 {
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69 job.AddResource(resources[i].asString());
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70 }
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71 }
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72 }
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73
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74
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75 static void AddResourcesOfInterest(ArchiveJob& job /* inout */,
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76 const Json::Value& body /* in */)
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77 {
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78 if (body.type() == Json::arrayValue)
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79 {
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80 AddResourcesOfInterestFromArray(job, body);
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81 }
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82 else if (body.type() == Json::objectValue)
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83 {
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84 if (body.isMember(KEY_RESOURCES))
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85 {
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86 AddResourcesOfInterestFromArray(job, body[KEY_RESOURCES]);
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87 }
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88 else
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89 {
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90 throw OrthancException(ErrorCode_BadFileFormat,
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91 "Missing field " + std::string(KEY_RESOURCES) +
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92 " in the JSON body");
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93 }
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94 }
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95 else
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96 {
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97 throw OrthancException(ErrorCode_BadFileFormat);
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98 }
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99 }
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100
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101
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102 static DicomTransferSyntax GetTransferSyntax(const std::string& value)
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103 {
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104 DicomTransferSyntax syntax;
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105 if (LookupTransferSyntax(syntax, value))
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106 {
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107 return syntax;
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108 }
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109 else
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110 {
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111 throw OrthancException(ErrorCode_ParameterOutOfRange,
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112 "Unknown transfer syntax: " + value);
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113 }
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114 }
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115
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116
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117 static void GetJobParameters(bool& synchronous, /* out */
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118 bool& extended, /* out */
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119 bool& transcode, /* out */
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120 DicomTransferSyntax& syntax, /* out */
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121 int& priority, /* out */
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122 const Json::Value& body, /* in */
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123 const bool defaultExtended /* in */)
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124 {
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125 synchronous = OrthancRestApi::IsSynchronousJobRequest
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126 (true /* synchronous by default */, body);
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127
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128 priority = OrthancRestApi::GetJobRequestPriority(body);
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129
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130 if (body.type() == Json::objectValue &&
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131 body.isMember(KEY_EXTENDED))
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132 {
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133 extended = SerializationToolbox::ReadBoolean(body, KEY_EXTENDED);
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134 }
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135 else
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136 {
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137 extended = defaultExtended;
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138 }
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139
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140 if (body.type() == Json::objectValue &&
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141 body.isMember(KEY_TRANSCODE))
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142 {
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143 transcode = true;
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144 syntax = GetTransferSyntax(SerializationToolbox::ReadString(body, KEY_TRANSCODE));
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145 }
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146 else
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147 {
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148 transcode = false;
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149 }
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150 }
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151
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152
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153 static void SubmitJob(RestApiOutput& output,
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154 ServerContext& context,
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155 std::unique_ptr<ArchiveJob>& job,
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156 int priority,
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157 bool synchronous,
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158 const std::string& filename)
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159 {
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160 if (job.get() == NULL)
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161 {
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162 throw OrthancException(ErrorCode_NullPointer);
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163 }
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164
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165 job->SetDescription("REST API");
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166
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167 if (synchronous)
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168 {
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169 boost::shared_ptr<TemporaryFile> tmp;
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170
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171 {
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172 OrthancConfiguration::ReaderLock lock;
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173 tmp.reset(lock.GetConfiguration().CreateTemporaryFile());
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174 }
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175
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176 job->SetSynchronousTarget(tmp);
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177
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178 Json::Value publicContent;
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179 context.GetJobsEngine().GetRegistry().SubmitAndWait
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180 (publicContent, job.release(), priority);
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181
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182 {
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183 // The archive is now created: Prepare the sending of the ZIP file
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184 FilesystemHttpSender sender(tmp->GetPath(), MimeType_Zip);
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185 sender.SetContentFilename(filename);
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186
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187 // Send the ZIP
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188 output.AnswerStream(sender);
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189 }
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190 }
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191 else
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192 {
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193 OrthancRestApi::SubmitGenericJob(output, context, job.release(), false, priority);
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194 }
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195 }
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196
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197
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198 static void DocumentPostArguments(RestApiPostCall& call,
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199 bool isMedia,
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200 bool defaultExtended)
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201 {
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202 call.GetDocumentation()
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203 .SetRequestField("Synchronous", RestApiCallDocumentation::Type_Boolean,
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204 "If `true`, create the archive in synchronous mode, which means that the HTTP answer will directly "
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205 "contain the ZIP file. This is the default, easy behavior, but it is *not* be desirable to archive "
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206 "large amount of data, as it might lead to network timeouts.", false)
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207 .SetRequestField("Asynchronous", RestApiCallDocumentation::Type_Boolean,
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208 "If `true`, create the archive in asynchronous mode, which means that a job is submitted to create "
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209 "the archive in background. Prefer this flavor wherever possible.", false)
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210 .SetRequestField(KEY_TRANSCODE, RestApiCallDocumentation::Type_String,
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211 "If present, the DICOM files in the archive will be transcoded to the provided "
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212 "transfer syntax: https://book.orthanc-server.com/faq/transcoding.html", false)
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213 .SetRequestField("Priority", RestApiCallDocumentation::Type_Number,
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214 "In asynchronous mode, the priority of the job. The lower the value, the higher the priority.", false)
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215 .AddAnswerType(MimeType_Zip, "In synchronous mode, the ZIP file containing the archive")
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216 .AddAnswerType(MimeType_Json, "In asynchronous mode, information about the job that has been submitted to "
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217 "generate the archive: https://book.orthanc-server.com/users/advanced-rest.html#jobs")
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218 .SetAnswerField("ID", RestApiCallDocumentation::Type_String, "Identifier of the job")
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219 .SetAnswerField("Path", RestApiCallDocumentation::Type_String, "Path to access the job in the REST API");
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220
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221 if (isMedia)
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222 {
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223 call.GetDocumentation().SetRequestField(
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224 KEY_EXTENDED, RestApiCallDocumentation::Type_Boolean, "If `true`, will include additional "
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225 "tags such as `SeriesDescription`, leading to a so-called *extended DICOMDIR*. Default value is " +
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226 std::string(defaultExtended ? "`true`" : "`false`") + ".", false);
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227 }
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228 }
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229
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230
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231 template <bool IS_MEDIA,
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232 bool DEFAULT_IS_EXTENDED /* only makes sense for media (i.e. not ZIP archives) */ >
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233 static void CreateBatch(RestApiPostCall& call)
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234 {
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235 if (call.IsDocumentation())
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236 {
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237 DocumentPostArguments(call, IS_MEDIA, DEFAULT_IS_EXTENDED);
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238 std::string m = (IS_MEDIA ? "DICOMDIR media" : "ZIP archive");
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239 call.GetDocumentation()
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240 .SetTag("System")
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241 .SetSummary("Create " + m)
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242 .SetDescription("Create a " + m + " containing the DICOM resources (patients, studies, series, or instances) "
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243 "whose Orthanc identifiers are provided in the body")
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244 .SetRequestField("Resources", RestApiCallDocumentation::Type_JsonListOfStrings,
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245 "The list of Orthanc identifiers of interest.", false);
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246 return;
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247 }
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248
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249 ServerContext& context = OrthancRestApi::GetContext(call);
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250
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251 Json::Value body;
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252 if (call.ParseJsonRequest(body))
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253 {
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254 bool synchronous, extended, transcode;
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255 DicomTransferSyntax transferSyntax;
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256 int priority;
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257 GetJobParameters(synchronous, extended, transcode, transferSyntax,
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258 priority, body, DEFAULT_IS_EXTENDED);
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259
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260 std::unique_ptr<ArchiveJob> job(new ArchiveJob(context, IS_MEDIA, extended));
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261 AddResourcesOfInterest(*job, body);
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262
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263 if (transcode)
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264 {
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265 job->SetTranscode(transferSyntax);
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266 }
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267
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268 SubmitJob(call.GetOutput(), context, job, priority, synchronous, "Archive.zip");
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269 }
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270 else
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271 {
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272 throw OrthancException(ErrorCode_BadFileFormat,
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273 "Expected a list of resources to archive in the body");
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274 }
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275 }
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276
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277
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278 template <bool IS_MEDIA>
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279 static void CreateSingleGet(RestApiGetCall& call)
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280 {
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281 if (call.IsDocumentation())
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282 {
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283 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str());
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284 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */);
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285 std::string m = (IS_MEDIA ? "DICOMDIR media" : "ZIP archive");
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286 call.GetDocumentation()
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287 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */))
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288 .SetSummary("Create " + m)
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289 .SetDescription("Synchronously create a " + m + " containing the DICOM " + r +
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290 " whose Orthanc identifier is provided in the URL. This flavor is synchronous, "
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291 "which might *not* be desirable to archive large amount of data, as it might "
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292 "lead to network timeouts. Prefer the asynchronous version using `POST` method.")
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293 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest")
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294 .SetHttpGetArgument("transcode", RestApiCallDocumentation::Type_String,
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295 "If present, the DICOM files in the archive will be transcoded to the provided "
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296 "transfer syntax: https://book.orthanc-server.com/faq/transcoding.html", false)
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297 .AddAnswerType(MimeType_Zip, "ZIP file containing the archive");
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298 if (IS_MEDIA)
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299 {
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300 call.GetDocumentation().SetHttpGetArgument(
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301 "extended", RestApiCallDocumentation::Type_String,
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302 "If present, will include additional tags such as `SeriesDescription`, leading to a so-called *extended DICOMDIR*", false);
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303 }
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304 return;
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305 }
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306
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307 ServerContext& context = OrthancRestApi::GetContext(call);
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308
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309 std::string id = call.GetUriComponent("id", "");
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diff changeset
310
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311 bool extended;
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312 if (IS_MEDIA)
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313 {
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diff changeset
314 extended = call.HasArgument("extended");
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315 }
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diff changeset
316 else
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317 {
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318 extended = false;
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319 }
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diff changeset
320
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321 std::unique_ptr<ArchiveJob> job(new ArchiveJob(context, IS_MEDIA, extended));
2632
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322 job->AddResource(id);
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diff changeset
323
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324 static const char* const TRANSCODE = "transcode";
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325 if (call.HasArgument(TRANSCODE))
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326 {
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327 job->SetTranscode(GetTransferSyntax(call.GetArgument(TRANSCODE, "")));
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328 }
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329
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330 SubmitJob(call.GetOutput(), context, job, 0 /* priority */,
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331 true /* synchronous */, id + ".zip");
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332 }
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diff changeset
333
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diff changeset
334
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335 template <bool IS_MEDIA>
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diff changeset
336 static void CreateSinglePost(RestApiPostCall& call)
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337 {
4416
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diff changeset
338 if (call.IsDocumentation())
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diff changeset
339 {
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diff changeset
340 DocumentPostArguments(call, IS_MEDIA, false /* not extended by default */);
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diff changeset
341 ResourceType t = StringToResourceType(call.GetFullUri()[0].c_str());
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342 std::string r = GetResourceTypeText(t, false /* plural */, false /* upper case */);
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343 std::string m = (IS_MEDIA ? "DICOMDIR media" : "ZIP archive");
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diff changeset
344 call.GetDocumentation()
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diff changeset
345 .SetTag(GetResourceTypeText(t, true /* plural */, true /* upper case */))
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diff changeset
346 .SetSummary("Create " + m)
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diff changeset
347 .SetDescription("Create a " + m + " containing the DICOM " + r +
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diff changeset
348 " whose Orthanc identifier is provided in the URL")
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diff changeset
349 .SetUriArgument("id", "Orthanc identifier of the " + r + " of interest");
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diff changeset
350 return;
0b27841950d5 openapi about creation of zip/media archives
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diff changeset
351 }
0b27841950d5 openapi about creation of zip/media archives
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diff changeset
352
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diff changeset
353 ServerContext& context = OrthancRestApi::GetContext(call);
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diff changeset
354
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
355 std::string id = call.GetUriComponent("id", "");
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diff changeset
356
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
357 Json::Value body;
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
358 if (call.ParseJsonRequest(body))
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2976
diff changeset
359 {
3913
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diff changeset
360 bool synchronous, extended, transcode;
6ddad3e0b569 transcoding ZIP archive and media
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diff changeset
361 DicomTransferSyntax transferSyntax;
2978
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diff changeset
362 int priority;
3913
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diff changeset
363 GetJobParameters(synchronous, extended, transcode, transferSyntax,
4416
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diff changeset
364 priority, body, false /* by default, not extented */);
2978
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diff changeset
365
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diff changeset
366 std::unique_ptr<ArchiveJob> job(new ArchiveJob(context, IS_MEDIA, extended));
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diff changeset
367 job->AddResource(id);
3913
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diff changeset
368
6ddad3e0b569 transcoding ZIP archive and media
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diff changeset
369 if (transcode)
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diff changeset
370 {
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diff changeset
371 job->SetTranscode(transferSyntax);
6ddad3e0b569 transcoding ZIP archive and media
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diff changeset
372 }
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diff changeset
373
2978
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374 SubmitJob(call.GetOutput(), context, job, priority, synchronous, id + ".zip");
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diff changeset
375 }
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2976
diff changeset
376 else
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
377 {
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
378 throw OrthancException(ErrorCode_BadFileFormat);
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diff changeset
379 }
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diff changeset
380 }
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diff changeset
381
Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
382
751
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parents:
diff changeset
383 void OrthancRestApi::RegisterArchive()
5197fd35333c refactoring of OrthancRestApi
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parents:
diff changeset
384 {
4416
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diff changeset
385 Register("/patients/{id}/archive", CreateSingleGet<false /* ZIP */>);
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diff changeset
386 Register("/patients/{id}/archive", CreateSinglePost<false /* ZIP */>);
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diff changeset
387 Register("/patients/{id}/media", CreateSingleGet<true /* media */>);
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diff changeset
388 Register("/patients/{id}/media", CreateSinglePost<true /* media */>);
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parents: 4045
diff changeset
389 Register("/series/{id}/archive", CreateSingleGet<false /* ZIP */>);
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parents: 4045
diff changeset
390 Register("/series/{id}/archive", CreateSinglePost<false /* ZIP */>);
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parents: 4045
diff changeset
391 Register("/series/{id}/media", CreateSingleGet<true /* media */>);
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diff changeset
392 Register("/series/{id}/media", CreateSinglePost<true /* media */>);
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diff changeset
393 Register("/studies/{id}/archive", CreateSingleGet<false /* ZIP */>);
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parents: 4045
diff changeset
394 Register("/studies/{id}/archive", CreateSinglePost<false /* ZIP */>);
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diff changeset
395 Register("/studies/{id}/media", CreateSingleGet<true /* media */>);
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff changeset
396 Register("/studies/{id}/media", CreateSinglePost<true /* media */>);
2978
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diff changeset
397
2970
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diff changeset
398 Register("/tools/create-archive",
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diff changeset
399 CreateBatch<false /* ZIP */, false /* extended makes no sense in ZIP */>);
eea66afed0db remove redundancies
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diff changeset
400 Register("/tools/create-media",
eea66afed0db remove redundancies
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diff changeset
401 CreateBatch<true /* media */, false /* not extended by default */>);
eea66afed0db remove redundancies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2969
diff changeset
402 Register("/tools/create-media-extended",
eea66afed0db remove redundancies
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 2969
diff changeset
403 CreateBatch<true /* media */, true /* extended by default */>);
751
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
404 }
5197fd35333c refactoring of OrthancRestApi
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
405 }