Mercurial > hg > orthanc
annotate OrthancFramework/Resources/Graveyard/TestTranscoding.cpp @ 4533:409cba9c1dba Orthanc-1.9.1
Orthanc-1.9.1
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Thu, 25 Feb 2021 16:59:24 +0100 |
parents | d9473bd5ed43 |
children | 7053502fbf97 |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
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6 * |
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7 * This program is free software: you can redistribute it and/or |
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8 * modify it under the terms of the GNU Lesser General Public License |
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9 * as published by the Free Software Foundation, either version 3 of |
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10 * the License, or (at your option) any later version. |
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11 * |
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12 * This program is distributed in the hope that it will be useful, but |
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13 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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14 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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15 * Lesser General Public License for more details. |
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16 * |
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17 * You should have received a copy of the GNU Lesser General Public |
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18 * License along with this program. If not, see |
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19 * <http://www.gnu.org/licenses/>. |
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20 **/ |
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21 |
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22 |
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23 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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24 DcmFileFormat& dicom, |
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25 DicomTransferSyntax syntax) |
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26 { |
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27 E_TransferSyntax xfer; |
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28 if (!LookupDcmtkTransferSyntax(xfer, syntax)) |
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29 { |
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30 return false; |
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31 } |
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32 else if (!dicom.validateMetaInfo(xfer).good()) |
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33 { |
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34 throw OrthancException(ErrorCode_InternalError, |
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35 "Cannot setup the transfer syntax to write a DICOM instance"); |
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36 } |
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37 else |
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38 { |
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39 return SaveToMemoryBufferInternal(buffer, dicom, xfer); |
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40 } |
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41 } |
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42 |
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43 |
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44 bool FromDcmtkBridge::SaveToMemoryBuffer(std::string& buffer, |
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45 DcmFileFormat& dicom) |
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46 { |
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47 E_TransferSyntax xfer = dicom.getDataset()->getCurrentXfer(); |
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48 if (xfer == EXS_Unknown) |
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49 { |
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50 throw OrthancException(ErrorCode_InternalError, |
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51 "Cannot write a DICOM instance with unknown transfer syntax"); |
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52 } |
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53 else if (!dicom.validateMetaInfo(xfer).good()) |
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54 { |
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55 throw OrthancException(ErrorCode_InternalError, |
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56 "Cannot setup the transfer syntax to write a DICOM instance"); |
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57 } |
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58 else |
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59 { |
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60 return SaveToMemoryBufferInternal(buffer, dicom, xfer); |
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61 } |
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62 } |
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63 |
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64 |
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65 |
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66 |
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67 |
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68 #include <dcmtk/dcmdata/dcostrmb.h> |
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69 #include <dcmtk/dcmdata/dcpixel.h> |
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70 #include <dcmtk/dcmdata/dcpxitem.h> |
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71 |
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72 #include "../Core/DicomParsing/Internals/DicomFrameIndex.h" |
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73 |
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74 namespace Orthanc |
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75 { |
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76 class IParsedDicomImage : public boost::noncopyable |
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77 { |
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78 public: |
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79 virtual ~IParsedDicomImage() |
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80 { |
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81 } |
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82 |
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83 virtual DicomTransferSyntax GetTransferSyntax() = 0; |
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84 |
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85 virtual std::string GetSopClassUid() = 0; |
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86 |
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87 virtual std::string GetSopInstanceUid() = 0; |
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88 |
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89 virtual unsigned int GetFramesCount() = 0; |
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90 |
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91 // Can return NULL, for compressed transfer syntaxes |
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92 virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) = 0; |
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93 |
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94 virtual void GetCompressedFrame(std::string& target, |
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95 unsigned int frame) = 0; |
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96 |
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97 virtual void WriteToMemoryBuffer(std::string& target) = 0; |
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98 }; |
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99 |
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100 |
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101 class IDicomImageReader : public boost::noncopyable |
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102 { |
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103 public: |
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104 virtual ~IDicomImageReader() |
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105 { |
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106 } |
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107 |
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108 virtual IParsedDicomImage* Read(const void* data, |
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109 size_t size) = 0; |
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110 |
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111 virtual IParsedDicomImage* Transcode(const void* data, |
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112 size_t size, |
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113 DicomTransferSyntax syntax, |
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114 bool allowNewSopInstanceUid) = 0; |
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115 }; |
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116 |
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117 |
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118 class DcmtkImageReader : public IDicomImageReader |
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119 { |
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120 private: |
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121 class Image : public IParsedDicomImage |
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122 { |
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123 private: |
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124 std::unique_ptr<DcmFileFormat> dicom_; |
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125 std::unique_ptr<DicomFrameIndex> index_; |
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126 DicomTransferSyntax transferSyntax_; |
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127 std::string sopClassUid_; |
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128 std::string sopInstanceUid_; |
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129 |
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130 static std::string GetStringTag(DcmDataset& dataset, |
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131 const DcmTagKey& tag) |
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132 { |
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133 const char* value = NULL; |
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134 |
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135 if (!dataset.findAndGetString(tag, value).good() || |
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136 value == NULL) |
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137 { |
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138 throw OrthancException(ErrorCode_BadFileFormat, |
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139 "Missing SOP class/instance UID in DICOM instance"); |
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140 } |
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141 else |
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142 { |
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143 return std::string(value); |
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144 } |
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145 } |
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146 |
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147 public: |
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148 Image(DcmFileFormat* dicom, |
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149 DicomTransferSyntax syntax) : |
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150 dicom_(dicom), |
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151 transferSyntax_(syntax) |
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152 { |
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153 if (dicom == NULL || |
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154 dicom_->getDataset() == NULL) |
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155 { |
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156 throw OrthancException(ErrorCode_NullPointer); |
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157 } |
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158 |
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159 DcmDataset& dataset = *dicom_->getDataset(); |
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160 index_.reset(new DicomFrameIndex(dataset)); |
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161 |
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162 sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); |
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163 sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); |
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164 } |
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165 |
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166 virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE |
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167 { |
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168 return transferSyntax_; |
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169 } |
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170 |
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171 virtual std::string GetSopClassUid() ORTHANC_OVERRIDE |
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172 { |
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173 return sopClassUid_; |
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174 } |
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175 |
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176 virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE |
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177 { |
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178 return sopInstanceUid_; |
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179 } |
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180 |
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181 virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE |
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182 { |
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183 return index_->GetFramesCount(); |
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184 } |
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185 |
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186 virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE |
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187 { |
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188 assert(dicom_.get() != NULL); |
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189 if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, transferSyntax_)) |
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190 { |
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191 throw OrthancException(ErrorCode_InternalError, |
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192 "Cannot write the DICOM instance to a memory buffer"); |
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193 } |
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194 } |
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195 |
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196 virtual ImageAccessor* GetUncompressedFrame(unsigned int frame) ORTHANC_OVERRIDE |
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197 { |
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198 assert(dicom_.get() != NULL && |
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199 dicom_->getDataset() != NULL); |
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200 return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); |
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201 } |
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202 |
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203 virtual void GetCompressedFrame(std::string& target, |
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204 unsigned int frame) ORTHANC_OVERRIDE |
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205 { |
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206 assert(index_.get() != NULL); |
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207 index_->GetRawFrame(target, frame); |
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208 } |
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209 }; |
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210 |
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211 unsigned int lossyQuality_; |
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212 |
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213 static DicomTransferSyntax DetectTransferSyntax(DcmFileFormat& dicom) |
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214 { |
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215 if (dicom.getDataset() == NULL) |
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216 { |
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217 throw OrthancException(ErrorCode_InternalError); |
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218 } |
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219 |
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220 DcmDataset& dataset = *dicom.getDataset(); |
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221 |
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222 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
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223 if (xfer == EXS_Unknown) |
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224 { |
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225 dataset.updateOriginalXfer(); |
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226 xfer = dataset.getCurrentXfer(); |
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227 if (xfer == EXS_Unknown) |
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228 { |
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229 throw OrthancException(ErrorCode_BadFileFormat, |
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230 "Cannot determine the transfer syntax of the DICOM instance"); |
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231 } |
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232 } |
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233 |
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234 DicomTransferSyntax syntax; |
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235 if (FromDcmtkBridge::LookupOrthancTransferSyntax(syntax, xfer)) |
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236 { |
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237 return syntax; |
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238 } |
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239 else |
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240 { |
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241 throw OrthancException( |
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242 ErrorCode_BadFileFormat, |
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243 "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); |
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244 } |
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245 } |
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246 |
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247 |
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248 static uint16_t GetBitsStored(DcmFileFormat& dicom) |
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249 { |
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250 if (dicom.getDataset() == NULL) |
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251 { |
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252 throw OrthancException(ErrorCode_InternalError); |
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253 } |
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254 |
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255 uint16_t bitsStored; |
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256 if (dicom.getDataset()->findAndGetUint16(DCM_BitsStored, bitsStored).good()) |
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257 { |
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258 return bitsStored; |
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259 } |
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260 else |
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261 { |
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262 throw OrthancException(ErrorCode_BadFileFormat, |
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263 "Missing \"Bits Stored\" tag in DICOM instance"); |
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264 } |
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265 } |
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266 |
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267 |
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268 public: |
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269 DcmtkImageReader() : |
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270 lossyQuality_(90) |
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271 { |
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272 } |
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273 |
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274 void SetLossyQuality(unsigned int quality) |
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275 { |
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276 if (quality <= 0 || |
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277 quality > 100) |
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278 { |
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279 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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280 } |
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281 else |
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282 { |
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283 lossyQuality_ = quality; |
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284 } |
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285 } |
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286 |
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287 unsigned int GetLossyQuality() const |
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288 { |
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289 return lossyQuality_; |
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290 } |
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291 |
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292 virtual IParsedDicomImage* Read(const void* data, |
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293 size_t size) |
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294 { |
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295 std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); |
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296 if (dicom.get() == NULL) |
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297 { |
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298 throw OrthancException(ErrorCode_BadFileFormat); |
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299 } |
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300 |
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301 DicomTransferSyntax transferSyntax = DetectTransferSyntax(*dicom); |
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302 |
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303 return new Image(dicom.release(), transferSyntax); |
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304 } |
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305 |
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306 virtual IParsedDicomImage* Transcode(const void* data, |
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307 size_t size, |
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308 DicomTransferSyntax syntax, |
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309 bool allowNewSopInstanceUid) |
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310 { |
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311 std::unique_ptr<DcmFileFormat> dicom(FromDcmtkBridge::LoadFromMemoryBuffer(data, size)); |
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312 if (dicom.get() == NULL) |
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313 { |
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314 throw OrthancException(ErrorCode_BadFileFormat); |
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315 } |
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316 |
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317 const uint16_t bitsStored = GetBitsStored(*dicom); |
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318 |
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319 if (syntax == DetectTransferSyntax(*dicom)) |
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320 { |
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321 // No transcoding is needed |
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322 return new Image(dicom.release(), syntax); |
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323 } |
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324 |
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325 if (syntax == DicomTransferSyntax_LittleEndianImplicit && |
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326 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianImplicit, NULL)) |
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327 { |
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328 return new Image(dicom.release(), syntax); |
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329 } |
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330 |
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331 if (syntax == DicomTransferSyntax_LittleEndianExplicit && |
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332 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_LittleEndianExplicit, NULL)) |
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333 { |
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334 return new Image(dicom.release(), syntax); |
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335 } |
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336 |
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337 if (syntax == DicomTransferSyntax_BigEndianExplicit && |
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338 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_BigEndianExplicit, NULL)) |
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339 { |
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340 return new Image(dicom.release(), syntax); |
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341 } |
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342 |
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343 if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && |
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344 FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_DeflatedLittleEndianExplicit, NULL)) |
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345 { |
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346 return new Image(dicom.release(), syntax); |
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347 } |
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348 |
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349 #if ORTHANC_ENABLE_JPEG == 1 |
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350 if (syntax == DicomTransferSyntax_JPEGProcess1 && |
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351 allowNewSopInstanceUid && |
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352 bitsStored == 8) |
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353 { |
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354 DJ_RPLossy rpLossy(lossyQuality_); |
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355 |
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356 if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess1, &rpLossy)) |
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357 { |
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358 return new Image(dicom.release(), syntax); |
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359 } |
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360 } |
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361 #endif |
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362 |
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363 #if ORTHANC_ENABLE_JPEG == 1 |
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364 if (syntax == DicomTransferSyntax_JPEGProcess2_4 && |
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365 allowNewSopInstanceUid && |
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366 bitsStored <= 12) |
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367 { |
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368 DJ_RPLossy rpLossy(lossyQuality_); |
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369 if (FromDcmtkBridge::Transcode(*dicom, DicomTransferSyntax_JPEGProcess2_4, &rpLossy)) |
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370 { |
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371 return new Image(dicom.release(), syntax); |
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372 } |
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373 } |
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374 #endif |
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375 |
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376 //LOG(INFO) << "Unable to transcode DICOM image using the built-in reader"; |
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377 return NULL; |
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378 } |
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379 }; |
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380 |
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381 |
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382 |
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383 class IDicomTranscoder1 : public boost::noncopyable |
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384 { |
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385 public: |
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386 virtual ~IDicomTranscoder1() |
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387 { |
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388 } |
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389 |
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390 virtual DcmFileFormat& GetDicom() = 0; |
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391 |
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392 virtual DicomTransferSyntax GetTransferSyntax() = 0; |
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393 |
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394 virtual std::string GetSopClassUid() = 0; |
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395 |
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396 virtual std::string GetSopInstanceUid() = 0; |
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397 |
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398 virtual unsigned int GetFramesCount() = 0; |
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399 |
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400 virtual ImageAccessor* DecodeFrame(unsigned int frame) = 0; |
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401 |
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402 virtual void GetCompressedFrame(std::string& target, |
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403 unsigned int frame) = 0; |
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404 |
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405 // NB: Transcoding can change the value of "GetSopInstanceUid()" |
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406 // and "GetTransferSyntax()" if lossy compression is applied |
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407 virtual bool Transcode(std::string& target, |
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408 DicomTransferSyntax syntax, |
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409 bool allowNewSopInstanceUid) = 0; |
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410 |
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411 virtual void WriteToMemoryBuffer(std::string& target) = 0; |
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412 }; |
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413 |
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414 |
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415 class DcmtkTranscoder2 : public IDicomTranscoder1 |
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416 { |
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417 private: |
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418 std::unique_ptr<DcmFileFormat> dicom_; |
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419 std::unique_ptr<DicomFrameIndex> index_; |
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420 DicomTransferSyntax transferSyntax_; |
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421 std::string sopClassUid_; |
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422 std::string sopInstanceUid_; |
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423 uint16_t bitsStored_; |
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424 unsigned int lossyQuality_; |
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425 |
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426 static std::string GetStringTag(DcmDataset& dataset, |
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427 const DcmTagKey& tag) |
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428 { |
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429 const char* value = NULL; |
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430 |
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431 if (!dataset.findAndGetString(tag, value).good() || |
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432 value == NULL) |
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433 { |
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434 throw OrthancException(ErrorCode_BadFileFormat, |
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435 "Missing SOP class/instance UID in DICOM instance"); |
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436 } |
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437 else |
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438 { |
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439 return std::string(value); |
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440 } |
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441 } |
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442 |
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443 void Setup(DcmFileFormat* dicom) |
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444 { |
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445 lossyQuality_ = 90; |
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446 |
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447 dicom_.reset(dicom); |
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448 |
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449 if (dicom == NULL || |
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450 dicom_->getDataset() == NULL) |
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451 { |
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452 throw OrthancException(ErrorCode_NullPointer); |
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453 } |
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454 |
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455 DcmDataset& dataset = *dicom_->getDataset(); |
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456 index_.reset(new DicomFrameIndex(dataset)); |
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457 |
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458 E_TransferSyntax xfer = dataset.getCurrentXfer(); |
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459 if (xfer == EXS_Unknown) |
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460 { |
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461 dataset.updateOriginalXfer(); |
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462 xfer = dataset.getCurrentXfer(); |
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463 if (xfer == EXS_Unknown) |
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464 { |
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465 throw OrthancException(ErrorCode_BadFileFormat, |
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466 "Cannot determine the transfer syntax of the DICOM instance"); |
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467 } |
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468 } |
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469 |
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470 if (!FromDcmtkBridge::LookupOrthancTransferSyntax(transferSyntax_, xfer)) |
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471 { |
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472 throw OrthancException( |
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473 ErrorCode_BadFileFormat, |
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474 "Unsupported transfer syntax: " + boost::lexical_cast<std::string>(xfer)); |
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475 } |
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476 |
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477 if (!dataset.findAndGetUint16(DCM_BitsStored, bitsStored_).good()) |
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478 { |
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479 throw OrthancException(ErrorCode_BadFileFormat, |
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480 "Missing \"Bits Stored\" tag in DICOM instance"); |
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481 } |
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482 |
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483 sopClassUid_ = GetStringTag(dataset, DCM_SOPClassUID); |
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484 sopInstanceUid_ = GetStringTag(dataset, DCM_SOPInstanceUID); |
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485 } |
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486 |
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487 public: |
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488 DcmtkTranscoder2(DcmFileFormat* dicom) // Takes ownership |
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489 { |
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490 Setup(dicom); |
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491 } |
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492 |
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493 DcmtkTranscoder2(const void* dicom, |
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494 size_t size) |
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495 { |
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496 Setup(FromDcmtkBridge::LoadFromMemoryBuffer(dicom, size)); |
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497 } |
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498 |
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499 void SetLossyQuality(unsigned int quality) |
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500 { |
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501 if (quality <= 0 || |
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502 quality > 100) |
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503 { |
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504 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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505 } |
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506 else |
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507 { |
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508 lossyQuality_ = quality; |
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509 } |
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510 } |
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511 |
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512 unsigned int GetLossyQuality() const |
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513 { |
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514 return lossyQuality_; |
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515 } |
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516 |
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517 unsigned int GetBitsStored() const |
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518 { |
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519 return bitsStored_; |
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520 } |
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521 |
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522 virtual DcmFileFormat& GetDicom() |
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523 { |
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524 assert(dicom_ != NULL); |
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525 return *dicom_; |
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526 } |
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527 |
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528 virtual DicomTransferSyntax GetTransferSyntax() ORTHANC_OVERRIDE |
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529 { |
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530 return transferSyntax_; |
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531 } |
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|
532 |
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533 virtual std::string GetSopClassUid() ORTHANC_OVERRIDE |
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534 { |
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535 return sopClassUid_; |
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536 } |
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537 |
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538 virtual std::string GetSopInstanceUid() ORTHANC_OVERRIDE |
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539 { |
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540 return sopInstanceUid_; |
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541 } |
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|
542 |
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543 virtual unsigned int GetFramesCount() ORTHANC_OVERRIDE |
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544 { |
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545 return index_->GetFramesCount(); |
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546 } |
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|
547 |
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548 virtual void WriteToMemoryBuffer(std::string& target) ORTHANC_OVERRIDE |
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549 { |
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550 if (!FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_)) |
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|
551 { |
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552 throw OrthancException(ErrorCode_InternalError, |
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553 "Cannot write the DICOM instance to a memory buffer"); |
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554 } |
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555 } |
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|
556 |
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557 virtual ImageAccessor* DecodeFrame(unsigned int frame) ORTHANC_OVERRIDE |
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558 { |
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559 assert(dicom_->getDataset() != NULL); |
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560 return DicomImageDecoder::Decode(*dicom_->getDataset(), frame); |
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561 } |
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|
562 |
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563 virtual void GetCompressedFrame(std::string& target, |
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564 unsigned int frame) ORTHANC_OVERRIDE |
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|
565 { |
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|
566 index_->GetRawFrame(target, frame); |
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parents:
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|
567 } |
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parents:
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|
568 |
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|
569 virtual bool Transcode(std::string& target, |
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570 DicomTransferSyntax syntax, |
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parents:
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|
571 bool allowNewSopInstanceUid) ORTHANC_OVERRIDE |
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|
572 { |
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573 assert(dicom_ != NULL && |
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574 dicom_->getDataset() != NULL); |
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|
575 |
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|
576 if (syntax == GetTransferSyntax()) |
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parents:
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|
577 { |
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578 printf("NO TRANSCODING\n"); |
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|
579 |
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580 // No change in the transfer syntax => simply serialize the current dataset |
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581 WriteToMemoryBuffer(target); |
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582 return true; |
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|
583 } |
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parents:
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|
584 |
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|
585 printf(">> %d\n", bitsStored_); |
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|
586 |
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587 if (syntax == DicomTransferSyntax_LittleEndianImplicit && |
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parents:
diff
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588 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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parents:
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589 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
590 { |
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591 transferSyntax_ = DicomTransferSyntax_LittleEndianImplicit; |
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592 return true; |
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|
593 } |
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changeset
|
594 |
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|
595 if (syntax == DicomTransferSyntax_LittleEndianExplicit && |
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596 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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597 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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598 { |
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599 transferSyntax_ = DicomTransferSyntax_LittleEndianExplicit; |
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|
600 return true; |
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|
601 } |
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|
602 |
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|
603 if (syntax == DicomTransferSyntax_BigEndianExplicit && |
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604 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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605 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
606 { |
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607 transferSyntax_ = DicomTransferSyntax_BigEndianExplicit; |
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608 return true; |
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|
609 } |
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changeset
|
610 |
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|
611 if (syntax == DicomTransferSyntax_DeflatedLittleEndianExplicit && |
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612 FromDcmtkBridge::Transcode(*dicom_, syntax, NULL) && |
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613 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
614 { |
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|
615 transferSyntax_ = DicomTransferSyntax_DeflatedLittleEndianExplicit; |
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616 return true; |
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|
617 } |
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|
618 |
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|
619 #if ORTHANC_ENABLE_JPEG == 1 |
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620 if (syntax == DicomTransferSyntax_JPEGProcess1 && |
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|
621 allowNewSopInstanceUid && |
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622 GetBitsStored() == 8) |
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|
623 { |
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|
624 DJ_RPLossy rpLossy(lossyQuality_); |
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|
625 |
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|
626 if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && |
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|
627 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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|
628 { |
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|
629 transferSyntax_ = DicomTransferSyntax_JPEGProcess1; |
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630 sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); |
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631 return true; |
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632 } |
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633 } |
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634 #endif |
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635 |
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636 #if ORTHANC_ENABLE_JPEG == 1 |
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637 if (syntax == DicomTransferSyntax_JPEGProcess2_4 && |
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638 allowNewSopInstanceUid && |
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639 GetBitsStored() <= 12) |
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640 { |
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641 DJ_RPLossy rpLossy(lossyQuality_); |
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642 if (FromDcmtkBridge::Transcode(*dicom_, syntax, &rpLossy) && |
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643 FromDcmtkBridge::SaveToMemoryBuffer(target, *dicom_, syntax)) |
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644 { |
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645 transferSyntax_ = DicomTransferSyntax_JPEGProcess2_4; |
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646 sopInstanceUid_ = GetStringTag(*dicom_->getDataset(), DCM_SOPInstanceUID); |
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647 return true; |
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648 } |
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649 } |
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650 #endif |
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|
651 |
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652 return false; |
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|
653 } |
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654 }; |
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|
655 } |
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|
656 |
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|
657 |
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|
658 |
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|
659 |
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660 #include <boost/filesystem.hpp> |
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|
661 |
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|
662 |
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663 static void TestFile(const std::string& path) |
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664 { |
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665 static unsigned int count = 0; |
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666 count++; |
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|
667 |
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|
668 |
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669 printf("** %s\n", path.c_str()); |
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|
670 |
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671 std::string s; |
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672 SystemToolbox::ReadFile(s, path); |
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|
673 |
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674 Orthanc::DcmtkTranscoder2 transcoder(s.c_str(), s.size()); |
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|
675 |
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676 /*if (transcoder.GetBitsStored() != 8) // TODO |
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|
677 return; */ |
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|
678 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
679 { |
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|
680 char buf[1024]; |
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|
681 sprintf(buf, "/tmp/source-%06d.dcm", count); |
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|
682 printf(">> %s\n", buf); |
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|
683 Orthanc::SystemToolbox::WriteFile(s, buf); |
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|
684 } |
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parents:
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|
685 |
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|
686 printf("[%s] [%s] [%s] %d %d\n", GetTransferSyntaxUid(transcoder.GetTransferSyntax()), |
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|
687 transcoder.GetSopClassUid().c_str(), transcoder.GetSopInstanceUid().c_str(), |
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parents:
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|
688 transcoder.GetFramesCount(), transcoder.GetTransferSyntax()); |
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parents:
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|
689 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
690 for (size_t i = 0; i < transcoder.GetFramesCount(); i++) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
691 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
692 std::string f; |
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parents:
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|
693 transcoder.GetCompressedFrame(f, i); |
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parents:
diff
changeset
|
694 |
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parents:
diff
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|
695 if (i == 0) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
696 { |
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parents:
diff
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|
697 char buf[1024]; |
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diff
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|
698 sprintf(buf, "/tmp/frame-%06d.raw", count); |
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parents:
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|
699 printf(">> %s\n", buf); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
700 Orthanc::SystemToolbox::WriteFile(f, buf); |
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moving old tests to the graveyard
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parents:
diff
changeset
|
701 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
702 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
703 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
704 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
705 std::string t; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
706 transcoder.WriteToMemoryBuffer(t); |
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moving old tests to the graveyard
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parents:
diff
changeset
|
707 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
708 Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
709 printf(">> %d %d ; %lu bytes\n", transcoder.GetTransferSyntax(), transcoder2.GetTransferSyntax(), t.size()); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
710 } |
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moving old tests to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
711 |
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moving old tests to the graveyard
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
712 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
713 std::string a = transcoder.GetSopInstanceUid(); |
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parents:
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|
714 DicomTransferSyntax b = transcoder.GetTransferSyntax(); |
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parents:
diff
changeset
|
715 |
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parents:
diff
changeset
|
716 DicomTransferSyntax syntax = DicomTransferSyntax_JPEGProcess2_4; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
717 //DicomTransferSyntax syntax = DicomTransferSyntax_LittleEndianExplicit; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
718 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
719 std::string t; |
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parents:
diff
changeset
|
720 bool ok = transcoder.Transcode(t, syntax, true); |
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parents:
diff
changeset
|
721 printf("Transcoding: %d\n", ok); |
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parents:
diff
changeset
|
722 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
723 if (ok) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
724 { |
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parents:
diff
changeset
|
725 printf("[%s] => [%s]\n", a.c_str(), transcoder.GetSopInstanceUid().c_str()); |
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parents:
diff
changeset
|
726 printf("[%s] => [%s]\n", GetTransferSyntaxUid(b), |
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parents:
diff
changeset
|
727 GetTransferSyntaxUid(transcoder.GetTransferSyntax())); |
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parents:
diff
changeset
|
728 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
729 { |
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parents:
diff
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|
730 char buf[1024]; |
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parents:
diff
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|
731 sprintf(buf, "/tmp/transcoded-%06d.dcm", count); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
732 printf(">> %s\n", buf); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
733 Orthanc::SystemToolbox::WriteFile(t, buf); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
734 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
735 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
736 Orthanc::DcmtkTranscoder2 transcoder2(t.c_str(), t.size()); |
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parents:
diff
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|
737 printf(" => transcoded transfer syntax %d ; %lu bytes\n", transcoder2.GetTransferSyntax(), t.size()); |
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parents:
diff
changeset
|
738 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
739 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
740 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
741 printf("\n"); |
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parents:
diff
changeset
|
742 } |
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parents:
diff
changeset
|
743 |
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parents:
diff
changeset
|
744 TEST(Toto, DISABLED_Transcode) |
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parents:
diff
changeset
|
745 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
746 //OFLog::configure(OFLogger::DEBUG_LOG_LEVEL); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
747 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
748 if (1) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
749 { |
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parents:
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changeset
|
750 const char* const PATH = "/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes"; |
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parents:
diff
changeset
|
751 |
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parents:
diff
changeset
|
752 for (boost::filesystem::directory_iterator it(PATH); |
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parents:
diff
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|
753 it != boost::filesystem::directory_iterator(); ++it) |
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754 { |
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|
755 if (boost::filesystem::is_regular_file(it->status())) |
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parents:
diff
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|
756 { |
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757 TestFile(it->path().string()); |
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parents:
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758 } |
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parents:
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|
759 } |
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|
760 } |
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|
761 |
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|
762 if (0) |
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parents:
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763 { |
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764 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Multiframe.dcm"); |
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765 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/Issue44/Monochrome1-Jpeg.dcm"); |
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766 } |
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767 |
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|
768 if (0) |
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diff
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769 { |
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770 TestFile("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/1.2.840.10008.1.2.1.dcm"); |
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771 } |
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changeset
|
772 } |
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changeset
|
773 |
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parents:
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changeset
|
774 |
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parents:
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775 TEST(Toto, DISABLED_Transcode2) |
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parents:
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|
776 { |
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777 for (int i = 0; i <= DicomTransferSyntax_XML; i++) |
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778 { |
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|
779 DicomTransferSyntax a = (DicomTransferSyntax) i; |
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780 |
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781 std::string path = ("/home/jodogne/Subversion/orthanc-tests/Database/TransferSyntaxes/" + |
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parents:
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782 std::string(GetTransferSyntaxUid(a)) + ".dcm"); |
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parents:
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783 if (Orthanc::SystemToolbox::IsRegularFile(path)) |
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784 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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785 printf("\n======= %s\n", GetTransferSyntaxUid(a)); |
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|
786 |
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|
787 std::string source; |
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parents:
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|
788 Orthanc::SystemToolbox::ReadFile(source, path); |
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|
789 |
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parents:
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|
790 DcmtkImageReader reader; |
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parents:
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|
791 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
792 { |
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|
793 std::unique_ptr<IParsedDicomImage> image( |
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parents:
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|
794 reader.Read(source.c_str(), source.size())); |
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parents:
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795 ASSERT_TRUE(image.get() != NULL); |
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|
796 ASSERT_EQ(a, image->GetTransferSyntax()); |
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|
797 |
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|
798 std::string target; |
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|
799 image->WriteToMemoryBuffer(target); |
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parents:
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|
800 } |
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|
801 |
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|
802 for (int j = 0; j <= DicomTransferSyntax_XML; j++) |
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|
803 { |
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|
804 DicomTransferSyntax b = (DicomTransferSyntax) j; |
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|
805 //if (a == b) continue; |
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parents:
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changeset
|
806 |
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|
807 std::unique_ptr<IParsedDicomImage> image( |
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parents:
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|
808 reader.Transcode(source.c_str(), source.size(), b, true)); |
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parents:
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|
809 if (image.get() != NULL) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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changeset
|
810 { |
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parents:
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|
811 printf("[%s] -> [%s]\n", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); |
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parents:
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|
812 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
813 std::string target; |
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parents:
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|
814 image->WriteToMemoryBuffer(target); |
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parents:
diff
changeset
|
815 |
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changeset
|
816 char buf[1024]; |
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|
817 sprintf(buf, "/tmp/%s-%s.dcm", GetTransferSyntaxUid(a), GetTransferSyntaxUid(b)); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
818 |
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|
819 SystemToolbox::WriteFile(target, buf); |
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parents:
diff
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|
820 } |
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parents:
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|
821 else if (a != DicomTransferSyntax_JPEG2000 && |
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parents:
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|
822 a != DicomTransferSyntax_JPEG2000LosslessOnly) |
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parents:
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|
823 { |
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|
824 ASSERT_TRUE(b != DicomTransferSyntax_LittleEndianImplicit && |
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parents:
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|
825 b != DicomTransferSyntax_LittleEndianExplicit && |
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parents:
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|
826 b != DicomTransferSyntax_BigEndianExplicit && |
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parents:
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|
827 b != DicomTransferSyntax_DeflatedLittleEndianExplicit); |
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parents:
diff
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|
828 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
829 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
830 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
831 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
832 } |
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parents:
diff
changeset
|
833 |
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parents:
diff
changeset
|
834 |
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|
835 #include "../Core/DicomNetworking/DicomAssociation.h" |
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parents:
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|
836 #include "../Core/DicomNetworking/DicomControlUserConnection.h" |
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parents:
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|
837 #include "../Core/DicomNetworking/DicomStoreUserConnection.h" |
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parents:
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|
838 |
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|
839 TEST(Toto, DISABLED_DicomAssociation) |
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parents:
diff
changeset
|
840 { |
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841 DicomAssociationParameters params; |
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|
842 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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parents:
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|
843 params.SetRemoteApplicationEntityTitle("PACS"); |
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parents:
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|
844 params.SetRemotePort(2001); |
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parents:
diff
changeset
|
845 |
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diff
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|
846 #if 0 |
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|
847 DicomAssociation assoc; |
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parents:
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|
848 assoc.ProposeGenericPresentationContext(UID_StorageCommitmentPushModelSOPClass); |
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parents:
diff
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|
849 assoc.ProposeGenericPresentationContext(UID_VerificationSOPClass); |
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parents:
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850 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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parents:
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|
851 DicomTransferSyntax_JPEGProcess1); |
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parents:
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852 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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parents:
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|
853 DicomTransferSyntax_JPEGProcess2_4); |
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parents:
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|
854 assoc.ProposePresentationContext(UID_ComputedRadiographyImageStorage, |
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parents:
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|
855 DicomTransferSyntax_JPEG2000); |
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parents:
diff
changeset
|
856 |
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|
857 assoc.Open(params); |
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parents:
diff
changeset
|
858 |
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|
859 int presID = ASC_findAcceptedPresentationContextID(&assoc.GetDcmtkAssociation(), UID_ComputedRadiographyImageStorage); |
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changeset
|
860 printf(">> %d\n", presID); |
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parents:
diff
changeset
|
861 |
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parents:
diff
changeset
|
862 std::map<DicomTransferSyntax, uint8_t> pc; |
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parents:
diff
changeset
|
863 printf(">> %d\n", assoc.LookupAcceptedPresentationContext(pc, UID_ComputedRadiographyImageStorage)); |
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parents:
diff
changeset
|
864 |
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parents:
diff
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|
865 for (std::map<DicomTransferSyntax, uint8_t>::const_iterator |
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parents:
diff
changeset
|
866 it = pc.begin(); it != pc.end(); ++it) |
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parents:
diff
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|
867 { |
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|
868 printf("[%s] => %d\n", GetTransferSyntaxUid(it->first), it->second); |
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parents:
diff
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|
869 } |
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parents:
diff
changeset
|
870 #else |
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parents:
diff
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|
871 { |
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parents:
diff
changeset
|
872 DicomControlUserConnection assoc(params); |
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parents:
diff
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|
873 |
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diff
changeset
|
874 try |
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|
875 { |
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876 printf(">> %d\n", assoc.Echo()); |
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877 } |
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parents:
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878 catch (OrthancException&) |
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parents:
diff
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|
879 { |
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parents:
diff
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|
880 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
881 } |
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parents:
diff
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|
882 |
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883 params.SetRemoteApplicationEntityTitle("PACS"); |
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884 params.SetRemotePort(2000); |
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|
885 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
886 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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887 DicomControlUserConnection assoc(params); |
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888 printf(">> %d\n", assoc.Echo()); |
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|
889 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
890 |
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|
891 #endif |
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|
892 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
893 |
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|
894 static void TestTranscode(DicomStoreUserConnection& scu, |
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895 const std::string& sopClassUid, |
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896 DicomTransferSyntax transferSyntax) |
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parents:
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|
897 { |
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parents:
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898 std::set<DicomTransferSyntax> accepted; |
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diff
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|
899 |
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parents:
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900 scu.LookupTranscoding(accepted, sopClassUid, transferSyntax); |
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901 if (accepted.empty()) |
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|
902 { |
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|
903 throw OrthancException(ErrorCode_NetworkProtocol, |
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parents:
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|
904 "The SOP class is not supported by the remote modality"); |
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parents:
diff
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|
905 } |
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parents:
diff
changeset
|
906 |
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parents:
diff
changeset
|
907 { |
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parents:
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|
908 unsigned int count = 0; |
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parents:
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|
909 for (std::set<DicomTransferSyntax>::const_iterator |
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parents:
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910 it = accepted.begin(); it != accepted.end(); ++it) |
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parents:
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|
911 { |
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parents:
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|
912 LOG(INFO) << "available for transcoding " << (count++) << ": " << sopClassUid |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
913 << " / " << GetTransferSyntaxUid(*it); |
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parents:
diff
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|
914 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
915 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
916 |
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|
917 if (accepted.find(transferSyntax) != accepted.end()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
918 { |
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parents:
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|
919 printf("**** OK, without transcoding !! [%s]\n", GetTransferSyntaxUid(transferSyntax)); |
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parents:
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|
920 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
921 else |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
922 { |
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parents:
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|
923 // Transcoding - only in Orthanc >= 1.7.0 |
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parents:
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|
924 |
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parents:
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|
925 const DicomTransferSyntax uncompressed[] = { |
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parents:
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|
926 DicomTransferSyntax_LittleEndianImplicit, // Default transfer syntax |
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parents:
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|
927 DicomTransferSyntax_LittleEndianExplicit, |
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parents:
diff
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|
928 DicomTransferSyntax_BigEndianExplicit |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
929 }; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
930 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
931 bool found = false; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
932 for (size_t i = 0; i < 3; i++) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
933 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
934 if (accepted.find(uncompressed[i]) != accepted.end()) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
935 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
936 printf("**** TRANSCODING to %s\n", GetTransferSyntaxUid(uncompressed[i])); |
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parents:
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|
937 found = true; |
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parents:
diff
changeset
|
938 break; |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
939 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
940 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
941 |
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parents:
diff
changeset
|
942 if (!found) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
943 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
944 printf("**** KO KO KO\n"); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
945 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
946 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
947 } |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
948 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
949 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
950 TEST(Toto, DISABLED_Store) |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
951 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
952 DicomAssociationParameters params; |
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parents:
diff
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|
953 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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parents:
diff
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|
954 params.SetRemoteApplicationEntityTitle("STORESCP"); |
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parents:
diff
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|
955 params.SetRemotePort(2000); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
956 |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
957 DicomStoreUserConnection assoc(params); |
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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|
958 assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess1); |
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parents:
diff
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|
959 assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_JPEGProcess2_4); |
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parents:
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|
960 //assoc.RegisterStorageClass(UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); |
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parents:
diff
changeset
|
961 |
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parents:
diff
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|
962 //assoc.SetUncompressedSyntaxesProposed(false); // Necessary for transcoding |
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|
963 assoc.SetCommonClassesProposed(false); |
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parents:
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|
964 assoc.SetRetiredBigEndianProposed(true); |
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parents:
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|
965 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_LittleEndianExplicit); |
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parents:
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|
966 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); |
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|
967 TestTranscode(assoc, UID_MRImageStorage, DicomTransferSyntax_JPEG2000); |
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|
968 } |
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parents:
diff
changeset
|
969 |
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parents:
diff
changeset
|
970 |
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parents:
diff
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|
971 TEST(Toto, DISABLED_Store2) |
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parents:
diff
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|
972 { |
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diff
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|
973 DicomAssociationParameters params; |
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parents:
diff
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|
974 params.SetLocalApplicationEntityTitle("ORTHANC"); |
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parents:
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|
975 params.SetRemoteApplicationEntityTitle("STORESCP"); |
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|
976 params.SetRemotePort(2000); |
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diff
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|
977 |
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diff
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|
978 DicomStoreUserConnection assoc(params); |
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|
979 //assoc.SetCommonClassesProposed(false); |
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parents:
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|
980 assoc.SetRetiredBigEndianProposed(true); |
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parents:
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|
981 |
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parents:
diff
changeset
|
982 std::string s; |
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parents:
diff
changeset
|
983 Orthanc::SystemToolbox::ReadFile(s, "/tmp/i/" + std::string(GetTransferSyntaxUid(DicomTransferSyntax_BigEndianExplicit)) +".dcm"); |
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parents:
diff
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|
984 |
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diff
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|
985 std::string c, i; |
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parents:
diff
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|
986 assoc.Store(c, i, s.c_str(), s.size()); |
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diff
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|
987 printf("[%s] [%s]\n", c.c_str(), i.c_str()); |
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|
988 } |
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parents:
diff
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|
989 |