Mercurial > hg > orthanc
annotate OrthancServer/Sources/ServerJobs/ArchiveJob.cpp @ 5441:40112827c56f
fix 'Priority' parsing
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Thu, 23 Nov 2023 10:15:19 +0100 |
| parents | b83192e7ad10 |
| children | 2d23c92c359a |
| rev | line source |
|---|---|
| 2632 | 1 /** |
| 2 * Orthanc - A Lightweight, RESTful DICOM Store | |
| 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics | |
| 4 * Department, University Hospital of Liege, Belgium | |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 2632 | 7 * |
| 8 * This program is free software: you can redistribute it and/or | |
| 9 * modify it under the terms of the GNU General Public License as | |
| 10 * published by the Free Software Foundation, either version 3 of the | |
| 11 * License, or (at your option) any later version. | |
| 12 * | |
| 13 * This program is distributed in the hope that it will be useful, but | |
| 14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
| 16 * General Public License for more details. | |
| 17 * | |
| 18 * You should have received a copy of the GNU General Public License | |
| 19 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
| 20 **/ | |
| 21 | |
| 22 | |
| 23 #include "../PrecompiledHeadersServer.h" | |
| 24 #include "ArchiveJob.h" | |
| 25 | |
| 4045 | 26 #include "../../../OrthancFramework/Sources/Cache/SharedArchive.h" |
| 27 #include "../../../OrthancFramework/Sources/Compression/HierarchicalZipWriter.h" | |
| 28 #include "../../../OrthancFramework/Sources/DicomParsing/DicomDirWriter.h" | |
| 29 #include "../../../OrthancFramework/Sources/DicomParsing/FromDcmtkBridge.h" | |
| 30 #include "../../../OrthancFramework/Sources/Logging.h" | |
| 31 #include "../../../OrthancFramework/Sources/OrthancException.h" | |
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32 #include "../../../OrthancFramework/Sources/MultiThreading/Semaphore.h" |
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33 #include "../OrthancConfiguration.h" |
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34 #include "../ServerContext.h" |
| 2632 | 35 |
| 36 #include <stdio.h> | |
| 37 | |
| 38 #if defined(_MSC_VER) | |
| 39 #define snprintf _snprintf | |
| 40 #endif | |
| 41 | |
| 42 static const uint64_t MEGA_BYTES = 1024 * 1024; | |
| 43 static const uint64_t GIGA_BYTES = 1024 * 1024 * 1024; | |
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44 |
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45 static const char* const MEDIA_IMAGES_FOLDER = "IMAGES"; |
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46 static const char* const KEY_DESCRIPTION = "Description"; |
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47 static const char* const KEY_INSTANCES_COUNT = "InstancesCount"; |
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48 static const char* const KEY_UNCOMPRESSED_SIZE_MB = "UncompressedSizeMB"; |
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49 static const char* const KEY_ARCHIVE_SIZE_MB = "ArchiveSizeMB"; |
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50 static const char* const KEY_UNCOMPRESSED_SIZE = "UncompressedSize"; |
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51 static const char* const KEY_ARCHIVE_SIZE = "ArchiveSize"; |
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52 static const char* const KEY_TRANSCODE = "Transcode"; |
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53 |
| 2632 | 54 |
| 55 namespace Orthanc | |
| 56 { | |
| 57 static bool IsZip64Required(uint64_t uncompressedSize, | |
| 58 unsigned int countInstances) | |
| 59 { | |
| 60 static const uint64_t SAFETY_MARGIN = 64 * MEGA_BYTES; // Should be large enough to hold DICOMDIR | |
| 61 static const unsigned int FILES_MARGIN = 10; | |
| 62 | |
| 63 /** | |
| 64 * Determine whether ZIP64 is required. Original ZIP format can | |
| 65 * store up to 2GB of data (some implementation supporting up to | |
| 66 * 4GB of data), and up to 65535 files. | |
| 67 * https://en.wikipedia.org/wiki/Zip_(file_format)#ZIP64 | |
| 68 **/ | |
| 69 | |
| 70 const bool isZip64 = (uncompressedSize >= 2 * GIGA_BYTES - SAFETY_MARGIN || | |
| 71 countInstances >= 65535 - FILES_MARGIN); | |
| 72 | |
| 73 LOG(INFO) << "Creating a ZIP file with " << countInstances << " files of size " | |
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74 << Toolbox::GetHumanFileSize(uncompressedSize) << " using the " |
| 2632 | 75 << (isZip64 ? "ZIP64" : "ZIP32") << " file format"; |
| 76 | |
| 77 return isZip64; | |
| 78 } | |
| 79 | |
| 80 | |
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81 class ArchiveJob::InstanceLoader : public boost::noncopyable |
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82 { |
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83 protected: |
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84 ServerContext& context_; |
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85 bool transcode_; |
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86 DicomTransferSyntax transferSyntax_; |
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87 public: |
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88 explicit InstanceLoader(ServerContext& context, bool transcode, DicomTransferSyntax transferSyntax) |
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89 : context_(context), |
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90 transcode_(transcode), |
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91 transferSyntax_(transferSyntax) |
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92 { |
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93 } |
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94 |
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95 virtual ~InstanceLoader() |
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96 { |
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97 } |
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98 |
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99 virtual void PrepareDicom(const std::string& instanceId) |
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100 { |
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101 } |
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102 |
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103 bool TranscodeDicom(std::string& transcodedBuffer, const std::string& sourceBuffer, const std::string& instanceId) |
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104 { |
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105 if (transcode_) |
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106 { |
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107 std::set<DicomTransferSyntax> syntaxes; |
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108 syntaxes.insert(transferSyntax_); |
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109 |
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110 IDicomTranscoder::DicomImage source, transcoded; |
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111 source.SetExternalBuffer(sourceBuffer); |
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112 |
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113 if (context_.Transcode(transcoded, source, syntaxes, true /* allow new SOP instance UID */)) |
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114 { |
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115 transcodedBuffer.assign(reinterpret_cast<const char*>(transcoded.GetBufferData()), transcoded.GetBufferSize()); |
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116 return true; |
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117 } |
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118 else |
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119 { |
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120 LOG(INFO) << "Cannot transcode instance " << instanceId |
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121 << " to transfer syntax: " << GetTransferSyntaxUid(transferSyntax_); |
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122 } |
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123 } |
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124 |
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125 return false; |
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126 } |
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127 |
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128 virtual void GetDicom(std::string& dicom, const std::string& instanceId) = 0; |
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129 |
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130 virtual void Clear() |
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131 { |
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132 } |
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133 }; |
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134 |
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135 class ArchiveJob::SynchronousInstanceLoader : public ArchiveJob::InstanceLoader |
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136 { |
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137 public: |
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138 explicit SynchronousInstanceLoader(ServerContext& context, bool transcode, DicomTransferSyntax transferSyntax) |
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139 : InstanceLoader(context, transcode, transferSyntax) |
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140 { |
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141 } |
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142 |
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143 virtual void GetDicom(std::string& dicom, const std::string& instanceId) ORTHANC_OVERRIDE |
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144 { |
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145 context_.ReadDicom(dicom, instanceId); |
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146 |
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147 if (transcode_) |
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148 { |
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149 std::string transcoded; |
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150 if (TranscodeDicom(transcoded, dicom, instanceId)) |
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151 { |
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152 dicom.swap(transcoded); |
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153 } |
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154 } |
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155 |
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156 } |
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157 }; |
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158 |
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159 class InstanceId : public Orthanc::IDynamicObject |
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160 { |
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161 private: |
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162 std::string id_; |
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163 |
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164 public: |
| 4815 | 165 explicit InstanceId(const std::string& id) : id_(id) |
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166 { |
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167 } |
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168 |
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169 virtual ~InstanceId() ORTHANC_OVERRIDE |
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170 { |
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171 } |
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172 |
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173 std::string GetId() const {return id_;}; |
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174 }; |
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175 |
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176 class ArchiveJob::ThreadedInstanceLoader : public ArchiveJob::InstanceLoader |
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177 { |
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178 Semaphore availableInstancesSemaphore_; |
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179 Semaphore bufferedInstancesSemaphore_; |
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180 std::map<std::string, boost::shared_ptr<std::string> > availableInstances_; |
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181 boost::mutex availableInstancesMutex_; |
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182 SharedMessageQueue instancesToPreload_; |
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183 std::vector<boost::thread*> threads_; |
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184 |
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185 |
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186 public: |
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187 ThreadedInstanceLoader(ServerContext& context, size_t threadCount, bool transcode, DicomTransferSyntax transferSyntax) |
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188 : InstanceLoader(context, transcode, transferSyntax), |
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189 availableInstancesSemaphore_(0), |
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190 bufferedInstancesSemaphore_(3*threadCount) |
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191 { |
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192 for (size_t i = 0; i < threadCount; i++) |
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193 { |
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194 threads_.push_back(new boost::thread(PreloaderWorkerThread, this)); |
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195 } |
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196 } |
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197 |
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198 virtual ~ThreadedInstanceLoader() |
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199 { |
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200 Clear(); |
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201 } |
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202 |
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203 virtual void Clear() ORTHANC_OVERRIDE |
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204 { |
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205 for (size_t i = 0; i < threads_.size(); i++) |
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206 { |
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207 instancesToPreload_.Enqueue(NULL); |
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208 } |
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209 |
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210 for (size_t i = 0; i < threads_.size(); i++) |
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211 { |
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212 if (threads_[i]->joinable()) |
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213 { |
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214 threads_[i]->join(); |
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215 } |
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216 delete threads_[i]; |
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217 } |
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218 |
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219 threads_.clear(); |
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220 availableInstances_.clear(); |
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221 } |
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222 |
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223 static void PreloaderWorkerThread(ThreadedInstanceLoader* that) |
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224 { |
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225 while (true) |
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226 { |
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227 std::unique_ptr<InstanceId> instanceId(dynamic_cast<InstanceId*>(that->instancesToPreload_.Dequeue(0))); |
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228 if (instanceId.get() == NULL) // that's the signal to exit the thread |
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229 { |
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230 return; |
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231 } |
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232 |
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233 // wait for the consumers (zip writer), no need to accumulate instances in memory if loaders are faster than writers |
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234 that->bufferedInstancesSemaphore_.Acquire(); |
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235 |
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236 try |
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237 { |
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238 boost::shared_ptr<std::string> dicomContent(new std::string()); |
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239 that->context_.ReadDicom(*dicomContent, instanceId->GetId()); |
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240 |
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241 if (that->transcode_) |
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242 { |
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243 boost::shared_ptr<std::string> transcodedDicom(new std::string()); |
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244 if (that->TranscodeDicom(*transcodedDicom, *dicomContent, instanceId->GetId())) |
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245 { |
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246 dicomContent = transcodedDicom; |
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247 } |
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248 } |
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249 |
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250 { |
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251 boost::mutex::scoped_lock lock(that->availableInstancesMutex_); |
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252 that->availableInstances_[instanceId->GetId()] = dicomContent; |
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253 } |
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254 |
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255 that->availableInstancesSemaphore_.Release(); |
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256 } |
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257 catch (OrthancException& e) |
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258 { |
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259 boost::mutex::scoped_lock lock(that->availableInstancesMutex_); |
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260 // store a NULL result to notify that we could not read the instance |
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261 that->availableInstances_[instanceId->GetId()] = boost::shared_ptr<std::string>(); |
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262 that->availableInstancesSemaphore_.Release(); |
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263 } |
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264 } |
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265 } |
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266 |
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267 virtual void PrepareDicom(const std::string& instanceId) ORTHANC_OVERRIDE |
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268 { |
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269 instancesToPreload_.Enqueue(new InstanceId(instanceId)); |
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270 } |
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271 |
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272 virtual void GetDicom(std::string& dicom, const std::string& instanceId) ORTHANC_OVERRIDE |
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273 { |
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274 while (true) |
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275 { |
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276 // wait for an instance to be available but this might not be the one we are waiting for ! |
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277 availableInstancesSemaphore_.Acquire(); |
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278 bufferedInstancesSemaphore_.Release(); // unlock the "flow" of loaders |
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279 |
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280 boost::shared_ptr<std::string> dicomContent; |
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281 { |
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282 if (availableInstances_.find(instanceId) != availableInstances_.end()) |
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283 { |
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284 // this is the instance we were waiting for |
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285 dicomContent = availableInstances_[instanceId]; |
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286 availableInstances_.erase(instanceId); |
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287 |
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288 if (dicomContent.get() == NULL) // there has been an error while reading the file |
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289 { |
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290 throw OrthancException(ErrorCode_InexistentItem); |
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291 } |
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292 dicom.swap(*dicomContent); |
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293 |
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294 if (availableInstances_.size() > 0) |
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295 { |
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296 // we have just read the instance we were waiting for but there are still other instances available -> |
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297 // make sure the next GetDicom call does not wait ! |
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298 availableInstancesSemaphore_.Release(); |
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299 } |
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300 return; |
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301 } |
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302 // we have not found the expected instance, simply wait for the next loader thread to signal the semaphore when |
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303 // a new instance is available |
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304 } |
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305 } |
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306 } |
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307 }; |
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308 |
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309 // This enum defines specific resource types to be used when exporting the archive. |
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310 // It defines if we should use the PatientInfo from the Patient or from the Study. |
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311 enum ArchiveResourceType |
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312 { |
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313 ArchiveResourceType_Patient = 0, |
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314 ArchiveResourceType_PatientInfoFromStudy = 1, |
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315 ArchiveResourceType_Study = 2, |
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316 ArchiveResourceType_Series = 3, |
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317 ArchiveResourceType_Instance = 4 |
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318 }; |
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319 |
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320 ResourceType GetResourceIdType(ArchiveResourceType type) |
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321 { |
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322 switch (type) |
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323 { |
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324 case ArchiveResourceType_Patient: |
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325 return ResourceType_Patient; |
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326 case ArchiveResourceType_PatientInfoFromStudy: // get the Patient tags from the Study id |
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327 return ResourceType_Study; |
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328 case ArchiveResourceType_Study: |
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329 return ResourceType_Study; |
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330 case ArchiveResourceType_Series: |
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331 return ResourceType_Series; |
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332 case ArchiveResourceType_Instance: |
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333 return ResourceType_Instance; |
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334 default: |
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335 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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336 } |
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337 } |
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338 |
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339 ResourceType GetResourceLevel(ArchiveResourceType type) |
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340 { |
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341 switch (type) |
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342 { |
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343 case ArchiveResourceType_Patient: |
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344 return ResourceType_Patient; |
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345 case ArchiveResourceType_PatientInfoFromStudy: // this is actually the same level as the Patient |
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346 return ResourceType_Patient; |
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347 case ArchiveResourceType_Study: |
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348 return ResourceType_Study; |
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349 case ArchiveResourceType_Series: |
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350 return ResourceType_Series; |
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351 case ArchiveResourceType_Instance: |
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352 return ResourceType_Instance; |
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353 default: |
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354 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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355 } |
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356 } |
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357 |
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358 ArchiveResourceType GetArchiveResourceType(ResourceType type) |
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359 { |
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360 switch (type) |
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361 { |
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362 case ResourceType_Patient: |
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363 return ArchiveResourceType_Patient; |
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364 case ArchiveResourceType_Study: |
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365 return ArchiveResourceType_PatientInfoFromStudy; |
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366 case ResourceType_Series: |
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367 return ArchiveResourceType_Series; |
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368 case ResourceType_Instance: |
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369 return ArchiveResourceType_Instance; |
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370 default: |
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371 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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372 } |
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373 } |
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374 |
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375 ArchiveResourceType GetChildResourceType(ArchiveResourceType type) |
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376 { |
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377 switch (type) |
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378 { |
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379 case ArchiveResourceType_Patient: |
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380 case ArchiveResourceType_PatientInfoFromStudy: |
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381 return ArchiveResourceType_Study; |
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382 |
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383 case ArchiveResourceType_Study: |
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384 return ArchiveResourceType_Series; |
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385 |
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386 case ArchiveResourceType_Series: |
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387 return ArchiveResourceType_Instance; |
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388 |
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389 default: |
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390 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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391 } |
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392 } |
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393 |
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394 |
| 2632 | 395 class ArchiveJob::ResourceIdentifiers : public boost::noncopyable |
| 396 { | |
| 397 private: | |
| 398 ResourceType level_; | |
| 399 std::string patient_; | |
| 400 std::string study_; | |
| 401 std::string series_; | |
| 402 std::string instance_; | |
| 403 | |
| 404 static void GoToParent(ServerIndex& index, | |
| 405 std::string& current) | |
| 406 { | |
| 407 std::string tmp; | |
| 408 | |
| 409 if (index.LookupParent(tmp, current)) | |
| 410 { | |
| 411 current = tmp; | |
| 412 } | |
| 413 else | |
| 414 { | |
| 415 throw OrthancException(ErrorCode_UnknownResource); | |
| 416 } | |
| 417 } | |
| 418 | |
| 419 | |
| 420 public: | |
| 421 ResourceIdentifiers(ServerIndex& index, | |
| 422 const std::string& publicId) | |
| 423 { | |
| 424 if (!index.LookupResourceType(level_, publicId)) | |
| 425 { | |
| 426 throw OrthancException(ErrorCode_UnknownResource); | |
| 427 } | |
| 428 | |
| 429 std::string current = publicId;; | |
| 430 switch (level_) // Do not add "break" below! | |
| 431 { | |
| 432 case ResourceType_Instance: | |
| 433 instance_ = current; | |
| 434 GoToParent(index, current); | |
| 435 | |
| 436 case ResourceType_Series: | |
| 437 series_ = current; | |
| 438 GoToParent(index, current); | |
| 439 | |
| 440 case ResourceType_Study: | |
| 441 study_ = current; | |
| 442 GoToParent(index, current); | |
| 443 | |
| 444 case ResourceType_Patient: | |
| 445 patient_ = current; | |
| 446 break; | |
| 447 | |
| 448 default: | |
| 449 throw OrthancException(ErrorCode_InternalError); | |
| 450 } | |
| 451 } | |
| 452 | |
| 453 ResourceType GetLevel() const | |
| 454 { | |
| 455 return level_; | |
| 456 } | |
| 457 | |
| 458 const std::string& GetIdentifier(ResourceType level) const | |
| 459 { | |
| 460 // Some sanity check to ensure enumerations are not altered | |
| 461 assert(ResourceType_Patient < ResourceType_Study); | |
| 462 assert(ResourceType_Study < ResourceType_Series); | |
| 463 assert(ResourceType_Series < ResourceType_Instance); | |
| 464 | |
| 465 if (level > level_) | |
| 466 { | |
| 467 throw OrthancException(ErrorCode_InternalError); | |
| 468 } | |
| 469 | |
| 470 switch (level) | |
| 471 { | |
| 472 case ResourceType_Patient: | |
| 473 return patient_; | |
| 474 | |
| 475 case ResourceType_Study: | |
| 476 return study_; | |
| 477 | |
| 478 case ResourceType_Series: | |
| 479 return series_; | |
| 480 | |
| 481 case ResourceType_Instance: | |
| 482 return instance_; | |
| 483 | |
| 484 default: | |
| 485 throw OrthancException(ErrorCode_InternalError); | |
| 486 } | |
| 487 } | |
| 488 }; | |
| 489 | |
| 490 | |
| 491 class ArchiveJob::IArchiveVisitor : public boost::noncopyable | |
| 492 { | |
| 493 public: | |
| 494 virtual ~IArchiveVisitor() | |
| 495 { | |
| 496 } | |
| 497 | |
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498 virtual void Open(ArchiveResourceType level, |
| 2632 | 499 const std::string& publicId) = 0; |
| 500 | |
| 501 virtual void Close() = 0; | |
| 502 | |
| 503 virtual void AddInstance(const std::string& instanceId, | |
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504 uint64_t uncompressedSize) = 0; |
| 2632 | 505 }; |
| 506 | |
| 507 | |
| 508 class ArchiveJob::ArchiveIndex : public boost::noncopyable | |
| 509 { | |
| 510 private: | |
| 511 struct Instance | |
| 512 { | |
| 513 std::string id_; | |
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514 uint64_t uncompressedSize_; |
| 2632 | 515 |
| 516 Instance(const std::string& id, | |
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517 uint64_t uncompressedSize) : |
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518 id_(id), |
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519 uncompressedSize_(uncompressedSize) |
| 2632 | 520 { |
| 521 } | |
| 522 }; | |
| 523 | |
| 524 // A "NULL" value for ArchiveIndex indicates a non-expanded node | |
| 525 typedef std::map<std::string, ArchiveIndex*> Resources; | |
| 526 | |
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527 ArchiveResourceType level_; |
| 2632 | 528 Resources resources_; // Only at patient/study/series level |
| 529 std::list<Instance> instances_; // Only at instance level | |
| 530 | |
| 531 | |
| 532 void AddResourceToExpand(ServerIndex& index, | |
| 533 const std::string& id) | |
| 534 { | |
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535 if (level_ == ArchiveResourceType_Instance) |
| 2632 | 536 { |
| 537 FileInfo tmp; | |
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538 int64_t revision; // ignored |
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539 if (index.LookupAttachment(tmp, revision, id, FileContentType_Dicom)) |
| 2632 | 540 { |
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541 instances_.push_back(Instance(id, tmp.GetUncompressedSize())); |
| 2632 | 542 } |
| 543 } | |
| 544 else | |
| 545 { | |
| 546 resources_[id] = NULL; | |
| 547 } | |
| 548 } | |
| 549 | |
| 550 | |
| 551 public: | |
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552 explicit ArchiveIndex(ArchiveResourceType level) : |
| 2632 | 553 level_(level) |
| 554 { | |
| 555 } | |
| 556 | |
| 557 ~ArchiveIndex() | |
| 558 { | |
| 559 for (Resources::iterator it = resources_.begin(); | |
| 560 it != resources_.end(); ++it) | |
| 561 { | |
| 562 delete it->second; | |
| 563 } | |
| 564 } | |
| 565 | |
| 566 | |
| 567 void Add(ServerIndex& index, | |
| 568 const ResourceIdentifiers& resource) | |
| 569 { | |
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570 const std::string& id = resource.GetIdentifier(GetResourceIdType(level_)); |
| 2632 | 571 Resources::iterator previous = resources_.find(id); |
| 572 | |
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573 if (level_ == ArchiveResourceType_Instance) |
| 2632 | 574 { |
| 575 AddResourceToExpand(index, id); | |
| 576 } | |
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577 else if (resource.GetLevel() == GetResourceLevel(level_)) |
| 2632 | 578 { |
| 579 // Mark this resource for further expansion | |
| 580 if (previous != resources_.end()) | |
| 581 { | |
| 582 delete previous->second; | |
| 583 } | |
| 584 | |
| 585 resources_[id] = NULL; | |
| 586 } | |
| 587 else if (previous == resources_.end()) | |
| 588 { | |
| 589 // This is the first time we meet this resource | |
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590 std::unique_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_))); |
| 2632 | 591 child->Add(index, resource); |
| 592 resources_[id] = child.release(); | |
| 593 } | |
| 594 else if (previous->second != NULL) | |
| 595 { | |
| 596 previous->second->Add(index, resource); | |
| 597 } | |
| 598 else | |
| 599 { | |
| 600 // Nothing to do: This item is marked for further expansion | |
| 601 } | |
| 602 } | |
| 603 | |
| 604 | |
| 605 void Expand(ServerIndex& index) | |
| 606 { | |
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607 if (level_ == ArchiveResourceType_Instance) |
| 2632 | 608 { |
| 609 // Expanding an instance node makes no sense | |
| 610 return; | |
| 611 } | |
| 612 | |
| 613 for (Resources::iterator it = resources_.begin(); | |
| 614 it != resources_.end(); ++it) | |
| 615 { | |
| 616 if (it->second == NULL) | |
| 617 { | |
| 618 // This is resource is marked for expansion | |
| 619 std::list<std::string> children; | |
| 620 index.GetChildren(children, it->first); | |
| 621 | |
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622 std::unique_ptr<ArchiveIndex> child(new ArchiveIndex(GetChildResourceType(level_))); |
| 2632 | 623 |
| 624 for (std::list<std::string>::const_iterator | |
| 625 it2 = children.begin(); it2 != children.end(); ++it2) | |
| 626 { | |
| 627 child->AddResourceToExpand(index, *it2); | |
| 628 } | |
| 629 | |
| 630 it->second = child.release(); | |
| 631 } | |
| 632 | |
| 633 assert(it->second != NULL); | |
| 634 it->second->Expand(index); | |
| 635 } | |
| 636 } | |
| 637 | |
| 638 | |
| 639 void Apply(IArchiveVisitor& visitor) const | |
| 640 { | |
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641 if (level_ == ArchiveResourceType_Instance) |
| 2632 | 642 { |
| 643 for (std::list<Instance>::const_iterator | |
| 644 it = instances_.begin(); it != instances_.end(); ++it) | |
| 645 { | |
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646 visitor.AddInstance(it->id_, it->uncompressedSize_); |
| 2632 | 647 } |
| 648 } | |
| 649 else | |
| 650 { | |
| 651 for (Resources::const_iterator it = resources_.begin(); | |
| 652 it != resources_.end(); ++it) | |
| 653 { | |
| 654 assert(it->second != NULL); // There must have been a call to "Expand()" | |
| 655 visitor.Open(level_, it->first); | |
| 656 it->second->Apply(visitor); | |
| 657 visitor.Close(); | |
| 658 } | |
| 659 } | |
| 660 } | |
| 661 }; | |
| 662 | |
| 663 | |
| 664 | |
| 665 class ArchiveJob::ZipCommands : public boost::noncopyable | |
| 666 { | |
| 667 private: | |
| 668 enum Type | |
| 669 { | |
| 670 Type_OpenDirectory, | |
| 671 Type_CloseDirectory, | |
| 672 Type_WriteInstance | |
| 673 }; | |
| 674 | |
| 675 class Command : public boost::noncopyable | |
| 676 { | |
| 677 private: | |
| 678 Type type_; | |
| 679 std::string filename_; | |
| 680 std::string instanceId_; | |
| 681 | |
| 682 public: | |
| 683 explicit Command(Type type) : | |
| 684 type_(type) | |
| 685 { | |
| 686 assert(type_ == Type_CloseDirectory); | |
| 687 } | |
| 688 | |
| 689 Command(Type type, | |
| 690 const std::string& filename) : | |
| 691 type_(type), | |
| 692 filename_(filename) | |
| 693 { | |
| 694 assert(type_ == Type_OpenDirectory); | |
| 695 } | |
| 696 | |
| 697 Command(Type type, | |
| 698 const std::string& filename, | |
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699 const std::string& instanceId) : |
| 2632 | 700 type_(type), |
| 701 filename_(filename), | |
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702 instanceId_(instanceId) |
| 2632 | 703 { |
| 704 assert(type_ == Type_WriteInstance); | |
| 705 } | |
| 706 | |
| 707 void Apply(HierarchicalZipWriter& writer, | |
| 708 ServerContext& context, | |
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709 InstanceLoader& instanceLoader, |
| 2632 | 710 DicomDirWriter* dicomDir, |
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711 const std::string& dicomDirFolder, |
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712 bool transcode, |
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713 DicomTransferSyntax transferSyntax) const |
| 2632 | 714 { |
| 715 switch (type_) | |
| 716 { | |
| 717 case Type_OpenDirectory: | |
| 718 writer.OpenDirectory(filename_.c_str()); | |
| 719 break; | |
| 720 | |
| 721 case Type_CloseDirectory: | |
| 722 writer.CloseDirectory(); | |
| 723 break; | |
| 724 | |
| 725 case Type_WriteInstance: | |
| 726 { | |
| 727 std::string content; | |
| 728 | |
| 729 try | |
| 730 { | |
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731 instanceLoader.GetDicom(content, instanceId_); |
| 2632 | 732 } |
| 733 catch (OrthancException& e) | |
| 734 { | |
| 735 LOG(WARNING) << "An instance was removed after the job was issued: " << instanceId_; | |
| 736 return; | |
| 737 } | |
| 2636 | 738 |
| 2632 | 739 writer.OpenFile(filename_.c_str()); |
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740 |
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741 std::unique_ptr<ParsedDicomFile> parsed; |
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742 |
| 5109 | 743 writer.Write(content); |
| 744 | |
| 745 if (dicomDir != NULL) | |
| 2632 | 746 { |
| 5109 | 747 if (parsed.get() == NULL) |
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748 { |
| 5109 | 749 parsed.reset(new ParsedDicomFile(content)); |
| 750 } | |
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751 |
| 5109 | 752 dicomDir->Add(dicomDirFolder, filename_, *parsed); |
| 2632 | 753 } |
| 754 | |
| 755 break; | |
| 756 } | |
| 757 | |
| 758 default: | |
| 759 throw OrthancException(ErrorCode_InternalError); | |
| 760 } | |
| 761 } | |
| 762 }; | |
| 763 | |
| 764 std::deque<Command*> commands_; | |
| 765 uint64_t uncompressedSize_; | |
| 766 unsigned int instancesCount_; | |
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767 InstanceLoader& instanceLoader_; |
| 2632 | 768 |
| 769 | |
| 770 void ApplyInternal(HierarchicalZipWriter& writer, | |
| 771 ServerContext& context, | |
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772 InstanceLoader& instanceLoader, |
| 2632 | 773 size_t index, |
| 774 DicomDirWriter* dicomDir, | |
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775 const std::string& dicomDirFolder, |
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776 bool transcode, |
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777 DicomTransferSyntax transferSyntax) const |
| 2632 | 778 { |
| 779 if (index >= commands_.size()) | |
| 780 { | |
| 781 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 782 } | |
| 783 | |
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784 commands_[index]->Apply(writer, context, instanceLoader, dicomDir, dicomDirFolder, transcode, transferSyntax); |
| 2632 | 785 } |
| 786 | |
| 787 public: | |
| 4815 | 788 explicit ZipCommands(InstanceLoader& instanceLoader) : |
| 2632 | 789 uncompressedSize_(0), |
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790 instancesCount_(0), |
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791 instanceLoader_(instanceLoader) |
| 2632 | 792 { |
| 793 } | |
| 794 | |
| 795 ~ZipCommands() | |
| 796 { | |
| 797 for (std::deque<Command*>::iterator it = commands_.begin(); | |
| 798 it != commands_.end(); ++it) | |
| 799 { | |
| 800 assert(*it != NULL); | |
| 801 delete *it; | |
| 802 } | |
| 803 } | |
| 804 | |
| 805 size_t GetSize() const | |
| 806 { | |
| 807 return commands_.size(); | |
| 808 } | |
| 809 | |
| 810 unsigned int GetInstancesCount() const | |
| 811 { | |
| 812 return instancesCount_; | |
| 813 } | |
| 814 | |
| 815 uint64_t GetUncompressedSize() const | |
| 816 { | |
| 817 return uncompressedSize_; | |
| 818 } | |
| 819 | |
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820 // "media" flavor (with DICOMDIR) |
| 2632 | 821 void Apply(HierarchicalZipWriter& writer, |
| 822 ServerContext& context, | |
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823 InstanceLoader& instanceLoader, |
| 2632 | 824 size_t index, |
| 825 DicomDirWriter& dicomDir, | |
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826 const std::string& dicomDirFolder, |
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827 bool transcode, |
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828 DicomTransferSyntax transferSyntax) const |
| 2632 | 829 { |
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830 ApplyInternal(writer, context, instanceLoader, index, &dicomDir, dicomDirFolder, transcode, transferSyntax); |
| 2632 | 831 } |
| 832 | |
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833 // "archive" flavor (without DICOMDIR) |
| 2632 | 834 void Apply(HierarchicalZipWriter& writer, |
| 835 ServerContext& context, | |
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836 InstanceLoader& instanceLoader, |
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837 size_t index, |
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838 bool transcode, |
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839 DicomTransferSyntax transferSyntax) const |
| 2632 | 840 { |
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841 ApplyInternal(writer, context, instanceLoader, index, NULL, "", transcode, transferSyntax); |
| 2632 | 842 } |
| 843 | |
| 844 void AddOpenDirectory(const std::string& filename) | |
| 845 { | |
| 846 commands_.push_back(new Command(Type_OpenDirectory, filename)); | |
| 847 } | |
| 848 | |
| 849 void AddCloseDirectory() | |
| 850 { | |
| 851 commands_.push_back(new Command(Type_CloseDirectory)); | |
| 852 } | |
| 853 | |
| 854 void AddWriteInstance(const std::string& filename, | |
| 855 const std::string& instanceId, | |
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856 uint64_t uncompressedSize) |
| 2632 | 857 { |
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858 instanceLoader_.PrepareDicom(instanceId); |
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859 commands_.push_back(new Command(Type_WriteInstance, filename, instanceId)); |
| 2632 | 860 instancesCount_ ++; |
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861 uncompressedSize_ += uncompressedSize; |
| 2632 | 862 } |
| 863 | |
| 864 bool IsZip64() const | |
| 865 { | |
| 866 return IsZip64Required(GetUncompressedSize(), GetInstancesCount()); | |
| 867 } | |
| 868 }; | |
| 869 | |
| 870 | |
| 871 | |
| 872 class ArchiveJob::ArchiveIndexVisitor : public IArchiveVisitor | |
| 873 { | |
| 874 private: | |
| 875 ZipCommands& commands_; | |
| 876 ServerContext& context_; | |
| 877 char instanceFormat_[24]; | |
| 878 unsigned int counter_; | |
| 879 | |
| 880 static std::string GetTag(const DicomMap& tags, | |
| 881 const DicomTag& tag) | |
| 882 { | |
| 883 const DicomValue* v = tags.TestAndGetValue(tag); | |
| 884 if (v != NULL && | |
| 885 !v->IsBinary() && | |
| 886 !v->IsNull()) | |
| 887 { | |
| 888 return v->GetContent(); | |
| 889 } | |
| 890 else | |
| 891 { | |
| 892 return ""; | |
| 893 } | |
| 894 } | |
| 895 | |
| 896 public: | |
| 897 ArchiveIndexVisitor(ZipCommands& commands, | |
| 898 ServerContext& context) : | |
| 899 commands_(commands), | |
| 900 context_(context), | |
| 901 counter_(0) | |
| 902 { | |
| 903 if (commands.GetSize() != 0) | |
| 904 { | |
| 905 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 906 } | |
| 907 | |
| 908 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm"); | |
| 909 } | |
| 910 | |
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911 virtual void Open(ArchiveResourceType level, |
| 4205 | 912 const std::string& publicId) ORTHANC_OVERRIDE |
| 2632 | 913 { |
| 914 std::string path; | |
| 915 | |
| 916 DicomMap tags; | |
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917 ResourceType resourceIdLevel = GetResourceIdType(level); |
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918 ResourceType interestLevel = (level == ArchiveResourceType_PatientInfoFromStudy ? ResourceType_Patient : resourceIdLevel); |
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919 |
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920 if (context_.GetIndex().GetMainDicomTags(tags, publicId, resourceIdLevel, interestLevel)) |
| 2632 | 921 { |
| 922 switch (level) | |
| 923 { | |
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924 case ArchiveResourceType_Patient: |
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925 case ArchiveResourceType_PatientInfoFromStudy: |
| 2632 | 926 path = GetTag(tags, DICOM_TAG_PATIENT_ID) + " " + GetTag(tags, DICOM_TAG_PATIENT_NAME); |
| 927 break; | |
| 928 | |
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929 case ArchiveResourceType_Study: |
| 2632 | 930 path = GetTag(tags, DICOM_TAG_ACCESSION_NUMBER) + " " + GetTag(tags, DICOM_TAG_STUDY_DESCRIPTION); |
| 931 break; | |
| 932 | |
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933 case ArchiveResourceType_Series: |
| 2632 | 934 { |
| 935 std::string modality = GetTag(tags, DICOM_TAG_MODALITY); | |
| 936 path = modality + " " + GetTag(tags, DICOM_TAG_SERIES_DESCRIPTION); | |
| 937 | |
| 938 if (modality.size() == 0) | |
| 939 { | |
| 940 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%%08d.dcm"); | |
| 941 } | |
| 942 else if (modality.size() == 1) | |
| 943 { | |
| 944 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%%07d.dcm", | |
| 945 toupper(modality[0])); | |
| 946 } | |
| 947 else if (modality.size() >= 2) | |
| 948 { | |
| 949 snprintf(instanceFormat_, sizeof(instanceFormat_) - 1, "%c%c%%06d.dcm", | |
| 950 toupper(modality[0]), toupper(modality[1])); | |
| 951 } | |
| 952 | |
| 953 counter_ = 0; | |
| 954 | |
| 955 break; | |
| 956 } | |
| 957 | |
| 958 default: | |
| 959 throw OrthancException(ErrorCode_InternalError); | |
| 960 } | |
| 961 } | |
| 962 | |
| 963 path = Toolbox::StripSpaces(Toolbox::ConvertToAscii(path)); | |
| 964 | |
| 965 if (path.empty()) | |
| 966 { | |
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967 path = std::string("Unknown ") + EnumerationToString(GetResourceLevel(level)); |
| 2632 | 968 } |
| 969 | |
| 970 commands_.AddOpenDirectory(path.c_str()); | |
| 971 } | |
| 972 | |
| 4205 | 973 virtual void Close() ORTHANC_OVERRIDE |
| 2632 | 974 { |
| 975 commands_.AddCloseDirectory(); | |
| 976 } | |
| 977 | |
| 978 virtual void AddInstance(const std::string& instanceId, | |
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979 uint64_t uncompressedSize) ORTHANC_OVERRIDE |
| 2632 | 980 { |
| 981 char filename[24]; | |
| 982 snprintf(filename, sizeof(filename) - 1, instanceFormat_, counter_); | |
| 983 counter_ ++; | |
| 984 | |
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985 commands_.AddWriteInstance(filename, instanceId, uncompressedSize); |
| 2632 | 986 } |
| 987 }; | |
| 988 | |
| 989 | |
| 990 class ArchiveJob::MediaIndexVisitor : public IArchiveVisitor | |
| 991 { | |
| 992 private: | |
| 993 ZipCommands& commands_; | |
| 994 unsigned int counter_; | |
| 995 | |
| 996 public: | |
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997 explicit MediaIndexVisitor(ZipCommands& commands) : |
| 2632 | 998 commands_(commands), |
| 999 counter_(0) | |
| 1000 { | |
| 1001 } | |
| 1002 | |
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1003 virtual void Open(ArchiveResourceType level, |
| 4205 | 1004 const std::string& publicId) ORTHANC_OVERRIDE |
| 2632 | 1005 { |
| 1006 } | |
| 1007 | |
| 4205 | 1008 virtual void Close() ORTHANC_OVERRIDE |
| 2632 | 1009 { |
| 1010 } | |
| 1011 | |
| 1012 virtual void AddInstance(const std::string& instanceId, | |
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1013 uint64_t uncompressedSize) ORTHANC_OVERRIDE |
| 2632 | 1014 { |
| 1015 // "DICOM restricts the filenames on DICOM media to 8 | |
| 1016 // characters (some systems wrongly use 8.3, but this does not | |
| 1017 // conform to the standard)." | |
| 1018 std::string filename = "IM" + boost::lexical_cast<std::string>(counter_); | |
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1019 commands_.AddWriteInstance(filename, instanceId, uncompressedSize); |
| 2632 | 1020 |
| 1021 counter_ ++; | |
| 1022 } | |
| 1023 }; | |
| 1024 | |
| 1025 | |
| 1026 class ArchiveJob::ZipWriterIterator : public boost::noncopyable | |
| 1027 { | |
| 1028 private: | |
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1029 ServerContext& context_; |
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1030 InstanceLoader& instanceLoader_; |
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1031 ZipCommands commands_; |
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1032 std::unique_ptr<HierarchicalZipWriter> zip_; |
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1033 std::unique_ptr<DicomDirWriter> dicomDir_; |
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1034 bool isMedia_; |
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1035 bool isStream_; |
| 2632 | 1036 |
| 1037 public: | |
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1038 ZipWriterIterator(ServerContext& context, |
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1039 InstanceLoader& instanceLoader, |
| 2632 | 1040 ArchiveIndex& archive, |
| 1041 bool isMedia, | |
| 1042 bool enableExtendedSopClass) : | |
| 1043 context_(context), | |
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1044 instanceLoader_(instanceLoader), |
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1045 commands_(instanceLoader), |
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1046 isMedia_(isMedia), |
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1047 isStream_(false) |
| 2632 | 1048 { |
| 1049 if (isMedia) | |
| 1050 { | |
| 4588 | 1051 MediaIndexVisitor visitor(commands_); |
| 2632 | 1052 archive.Expand(context.GetIndex()); |
| 1053 | |
| 1054 commands_.AddOpenDirectory(MEDIA_IMAGES_FOLDER); | |
| 1055 archive.Apply(visitor); | |
| 1056 commands_.AddCloseDirectory(); | |
| 1057 | |
| 1058 dicomDir_.reset(new DicomDirWriter); | |
| 1059 dicomDir_->EnableExtendedSopClass(enableExtendedSopClass); | |
| 1060 } | |
| 1061 else | |
| 1062 { | |
| 1063 ArchiveIndexVisitor visitor(commands_, context); | |
| 1064 archive.Expand(context.GetIndex()); | |
| 1065 archive.Apply(visitor); | |
| 1066 } | |
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1067 } |
| 2632 | 1068 |
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1069 void SetOutputFile(const std::string& path) |
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1070 { |
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1071 if (zip_.get() == NULL) |
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1072 { |
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1073 zip_.reset(new HierarchicalZipWriter(path.c_str())); |
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1074 zip_->SetZip64(commands_.IsZip64()); |
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1075 isStream_ = false; |
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1076 } |
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1077 else |
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1078 { |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1079 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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|
1080 } |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1081 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1082 |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1083 void AcquireOutputStream(ZipWriter::IOutputStream* output) |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1084 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
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|
1085 std::unique_ptr<ZipWriter::IOutputStream> protection(output); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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1086 |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1087 if (zip_.get() == NULL) |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1088 { |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
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1089 zip_.reset(new HierarchicalZipWriter(protection.release(), commands_.IsZip64())); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1090 isStream_ = true; |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1091 } |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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|
1092 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1093 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1094 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1095 } |
| 2632 | 1096 } |
|
4674
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ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
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1097 |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1098 void CancelStream() |
|
cdab941fe17d
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1099 { |
|
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1100 if (zip_.get() == NULL) |
|
cdab941fe17d
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diff
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1101 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1102 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cdab941fe17d
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1103 } |
|
cdab941fe17d
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|
1104 else if (isStream_) |
|
cdab941fe17d
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diff
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1105 { |
|
cdab941fe17d
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diff
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|
1106 zip_->CancelStream(); |
|
cdab941fe17d
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1107 } |
|
cdab941fe17d
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1108 } |
|
cdab941fe17d
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1109 |
|
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|
1110 void Close() |
|
cdab941fe17d
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1111 { |
|
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1112 if (zip_.get() == NULL) |
|
cdab941fe17d
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changeset
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1113 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1114 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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1115 } |
|
cdab941fe17d
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|
1116 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1117 { |
|
cdab941fe17d
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|
1118 zip_->Close(); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1119 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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|
1120 } |
|
cdab941fe17d
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|
1121 |
|
cdab941fe17d
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diff
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|
1122 uint64_t GetArchiveSize() const |
|
cdab941fe17d
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diff
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1123 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1124 if (zip_.get() == NULL) |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
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|
1125 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1126 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1127 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1128 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1129 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1130 return zip_->GetArchiveSize(); |
|
cdab941fe17d
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|
1131 } |
|
cdab941fe17d
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|
1132 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
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|
1133 |
| 2632 | 1134 size_t GetStepsCount() const |
| 1135 { | |
| 1136 return commands_.GetSize() + 1; | |
| 1137 } | |
| 1138 | |
|
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transcoding ZIP archive and media
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|
1139 void RunStep(size_t index, |
|
6ddad3e0b569
transcoding ZIP archive and media
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diff
changeset
|
1140 bool transcode, |
|
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transcoding ZIP archive and media
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diff
changeset
|
1141 DicomTransferSyntax transferSyntax) |
| 2632 | 1142 { |
| 1143 if (index > commands_.GetSize()) | |
| 1144 { | |
| 1145 throw OrthancException(ErrorCode_ParameterOutOfRange); | |
| 1146 } | |
|
4674
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1147 else if (zip_.get() == NULL) |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1148 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1149 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1150 } |
| 2632 | 1151 else if (index == commands_.GetSize()) |
| 1152 { | |
| 1153 // Last step: Add the DICOMDIR | |
| 1154 if (isMedia_) | |
| 1155 { | |
| 1156 assert(dicomDir_.get() != NULL); | |
| 1157 std::string s; | |
| 1158 dicomDir_->Encode(s); | |
| 1159 | |
| 1160 zip_->OpenFile("DICOMDIR"); | |
| 1161 zip_->Write(s); | |
| 1162 } | |
| 1163 } | |
| 1164 else | |
| 1165 { | |
| 1166 if (isMedia_) | |
| 1167 { | |
| 1168 assert(dicomDir_.get() != NULL); | |
|
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enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
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diff
changeset
|
1169 commands_.Apply(*zip_, context_, instanceLoader_, index, *dicomDir_, |
|
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diff
changeset
|
1170 MEDIA_IMAGES_FOLDER, transcode, transferSyntax); |
| 2632 | 1171 } |
| 1172 else | |
| 1173 { | |
| 1174 assert(dicomDir_.get() == NULL); | |
|
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Alain Mazy <am@osimis.io>
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diff
changeset
|
1175 commands_.Apply(*zip_, context_, instanceLoader_, index, transcode, transferSyntax); |
| 2632 | 1176 } |
| 1177 } | |
| 1178 } | |
| 1179 | |
| 1180 unsigned int GetInstancesCount() const | |
| 1181 { | |
| 1182 return commands_.GetInstancesCount(); | |
| 1183 } | |
| 1184 | |
| 1185 uint64_t GetUncompressedSize() const | |
| 1186 { | |
| 1187 return commands_.GetUncompressedSize(); | |
| 1188 } | |
| 1189 }; | |
| 1190 | |
| 1191 | |
| 2966 | 1192 ArchiveJob::ArchiveJob(ServerContext& context, |
| 2632 | 1193 bool isMedia, |
|
5401
fc604681e6be
When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
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parents:
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diff
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|
1194 bool enableExtendedSopClass, |
|
fc604681e6be
When exporting a study archive, make sure to use the PatientName from the study and not from the patient in case of PatientID collision
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diff
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|
1195 ResourceType jobLevel) : |
| 2632 | 1196 context_(context), |
|
5403
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fix to keep backward behaviour when exporting a series archive
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5401
diff
changeset
|
1197 archive_(new ArchiveIndex(GetArchiveResourceType(jobLevel))), // get patient Info from this level |
| 2632 | 1198 isMedia_(isMedia), |
| 1199 enableExtendedSopClass_(enableExtendedSopClass), | |
| 1200 currentStep_(0), | |
| 1201 instancesCount_(0), | |
|
3913
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transcoding ZIP archive and media
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diff
changeset
|
1202 uncompressedSize_(0), |
|
4341
977c2759eb0a
Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
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diff
changeset
|
1203 archiveSize_(0), |
|
3913
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transcoding ZIP archive and media
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changeset
|
1204 transcode_(false), |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
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diff
changeset
|
1205 transferSyntax_(DicomTransferSyntax_LittleEndianImplicit), |
|
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enable using multiple threads to load instances when generating zip archive/media
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diff
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|
1206 loaderThreads_(0) |
| 2632 | 1207 { |
| 2966 | 1208 } |
| 1209 | |
|
2976
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Asynchronous generation of ZIP archives and DICOM medias
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changeset
|
1210 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
changeset
|
1211 ArchiveJob::~ArchiveJob() |
|
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Asynchronous generation of ZIP archives and DICOM medias
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1212 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
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|
1213 if (!mediaArchiveId_.empty()) |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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2966
diff
changeset
|
1214 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
changeset
|
1215 context_.GetMediaArchive().Remove(mediaArchiveId_); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
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|
1216 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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changeset
|
1217 } |
|
cb5d75143da0
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changeset
|
1218 |
| 2966 | 1219 |
|
4674
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diff
changeset
|
1220 void ArchiveJob::AcquireSynchronousTarget(ZipWriter::IOutputStream* target) |
| 2966 | 1221 { |
|
4674
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diff
changeset
|
1222 std::unique_ptr<ZipWriter::IOutputStream> protection(target); |
|
cdab941fe17d
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diff
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|
1223 |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1224 if (target == NULL) |
| 2632 | 1225 { |
| 1226 throw OrthancException(ErrorCode_NullPointer); | |
| 1227 } | |
|
2976
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Asynchronous generation of ZIP archives and DICOM medias
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diff
changeset
|
1228 else if (writer_.get() != NULL || // Already started |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
changeset
|
1229 synchronousTarget_.get() != NULL || |
|
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diff
changeset
|
1230 asynchronousTarget_.get() != NULL) |
| 2966 | 1231 { |
| 1232 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1233 } | |
| 1234 else | |
| 1235 { | |
|
4674
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ZIP archive/media generated in synchronous mode are now streamed by default
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diff
changeset
|
1236 synchronousTarget_.reset(protection.release()); |
| 2966 | 1237 } |
| 2632 | 1238 } |
| 1239 | |
| 1240 | |
|
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diff
changeset
|
1241 void ArchiveJob::SetDescription(const std::string& description) |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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changeset
|
1242 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
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diff
changeset
|
1243 if (writer_.get() != NULL) // Already started |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1244 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1245 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1246 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1247 else |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1248 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1249 description_ = description; |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1250 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1251 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1252 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1253 |
|
5169
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1254 void ArchiveJob::AddResource(const std::string& publicId, |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1255 bool mustExist, |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1256 ResourceType expectedType) |
| 2632 | 1257 { |
| 1258 if (writer_.get() != NULL) // Already started | |
| 1259 { | |
| 1260 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1261 } | |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1262 else |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1263 { |
|
5169
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1264 if (mustExist) |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1265 { |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1266 ResourceType type; |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1267 if (!context_.GetIndex().LookupResourceType(type, publicId) || |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1268 type != expectedType) |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1269 { |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1270 throw OrthancException(ErrorCode_InexistentItem, |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1271 "Missing resource while creating an archive: " + publicId); |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1272 } |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1273 } |
|
8b74aa4f3515
enforce the existence of the patient/study/instance while creating its archive
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
5109
diff
changeset
|
1274 |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1275 ResourceIdentifiers resource(context_.GetIndex(), publicId); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1276 archive_->Add(context_.GetIndex(), resource); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1277 } |
| 2632 | 1278 } |
| 1279 | |
|
3913
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1280 |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1281 void ArchiveJob::SetTranscode(DicomTransferSyntax transferSyntax) |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1282 { |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1283 if (writer_.get() != NULL) // Already started |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1284 { |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1285 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1286 } |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1287 else |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1288 { |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1289 transcode_ = true; |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1290 transferSyntax_ = transferSyntax; |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1291 } |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1292 } |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1293 |
| 2632 | 1294 |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1295 void ArchiveJob::SetLoaderThreads(unsigned int loaderThreads) |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1296 { |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1297 if (writer_.get() != NULL) // Already started |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1298 { |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1299 throw OrthancException(ErrorCode_BadSequenceOfCalls); |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1300 } |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1301 else |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1302 { |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1303 loaderThreads_ = loaderThreads; |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1304 } |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1305 } |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1306 |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1307 |
|
2812
ea7aea6f6a95
improved naming of methods in IJob
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2730
diff
changeset
|
1308 void ArchiveJob::Reset() |
| 2632 | 1309 { |
| 2955 | 1310 throw OrthancException(ErrorCode_BadSequenceOfCalls, |
| 1311 "Cannot resubmit the creation of an archive"); | |
| 2632 | 1312 } |
| 1313 | |
| 1314 | |
| 1315 void ArchiveJob::Start() | |
| 1316 { | |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1317 if (loaderThreads_ == 0) |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1318 { |
|
4902
df86d2505df8
Orthanc 1.9.8 is now known as Orthanc 1.10.0
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4892
diff
changeset
|
1319 // default behaviour before loaderThreads was introducted in 1.10.0 |
|
5108
a386dfb5b386
Optimization: now using multiple threads to transcode files for asynchronous download of studies archive
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
1320 instanceLoader_.reset(new SynchronousInstanceLoader(context_, transcode_, transferSyntax_)); |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1321 } |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1322 else |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1323 { |
|
5108
a386dfb5b386
Optimization: now using multiple threads to transcode files for asynchronous download of studies archive
Alain Mazy <am@osimis.io>
parents:
4902
diff
changeset
|
1324 instanceLoader_.reset(new ThreadedInstanceLoader(context_, loaderThreads_, transcode_, transferSyntax_)); |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1325 } |
|
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1326 |
| 2632 | 1327 if (writer_.get() != NULL) |
| 1328 { | |
| 1329 throw OrthancException(ErrorCode_BadSequenceOfCalls); | |
| 1330 } | |
|
4674
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1331 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1332 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1333 if (synchronousTarget_.get() == NULL) |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1334 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1335 if (asynchronousTarget_.get() != NULL) |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1336 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1337 // It is up to this method to create the asynchronous target |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1338 throw OrthancException(ErrorCode_InternalError); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1339 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1340 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1341 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1342 OrthancConfiguration::ReaderLock lock; |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1343 asynchronousTarget_.reset(lock.GetConfiguration().CreateTemporaryFile()); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1344 |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1345 assert(asynchronousTarget_.get() != NULL); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1346 asynchronousTarget_->Touch(); // Make sure we can write to the temporary file |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1347 |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1348 writer_.reset(new ZipWriterIterator(context_, *instanceLoader_, *archive_, isMedia_, enableExtendedSopClass_)); |
|
4674
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1349 writer_->SetOutputFile(asynchronousTarget_->GetPath()); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1350 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1351 } |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1352 else |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1353 { |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1354 assert(synchronousTarget_.get() != NULL); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1355 |
|
4797
4e765c18ace7
enable using multiple threads to load instances when generating zip archive/media
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1356 writer_.reset(new ZipWriterIterator(context_, *instanceLoader_, *archive_, isMedia_, enableExtendedSopClass_)); |
|
4674
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1357 writer_->AcquireOutputStream(synchronousTarget_.release()); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1358 } |
| 2632 | 1359 |
|
4674
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1360 instancesCount_ = writer_->GetInstancesCount(); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1361 uncompressedSize_ = writer_->GetUncompressedSize(); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4641
diff
changeset
|
1362 } |
| 2632 | 1363 } |
| 1364 | |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1365 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1366 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1367 namespace |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1368 { |
|
cb5d75143da0
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1369 class DynamicTemporaryFile : public IDynamicObject |
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1370 { |
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1371 private: |
|
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|
1372 std::unique_ptr<TemporaryFile> file_; |
|
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1373 |
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1374 public: |
| 4205 | 1375 explicit DynamicTemporaryFile(TemporaryFile* f) : file_(f) |
|
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1376 { |
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1377 if (f == NULL) |
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1378 { |
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1379 throw OrthancException(ErrorCode_NullPointer); |
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1380 } |
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|
1381 } |
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|
1382 |
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|
1383 const TemporaryFile& GetFile() const |
|
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1384 { |
|
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1385 assert(file_.get() != NULL); |
|
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1386 return *file_; |
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1387 } |
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1388 }; |
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1389 } |
| 2632 | 1390 |
|
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1391 |
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1392 void ArchiveJob::FinalizeTarget() |
|
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|
1393 { |
|
4674
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1394 if (writer_.get() != NULL) |
|
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1395 { |
|
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|
1396 writer_->Close(); // Flush all the results |
|
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1397 archiveSize_ = writer_->GetArchiveSize(); |
|
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1398 writer_.reset(); |
|
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1399 } |
|
4674
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|
1400 |
|
4797
4e765c18ace7
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Alain Mazy <am@osimis.io>
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|
1401 if (instanceLoader_.get() != NULL) |
|
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1402 { |
|
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|
1403 instanceLoader_->Clear(); |
|
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1404 } |
|
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enable using multiple threads to load instances when generating zip archive/media
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1405 |
|
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1406 if (asynchronousTarget_.get() != NULL) |
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1407 { |
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1408 // Asynchronous behavior: Move the resulting file into the media archive |
|
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|
1409 mediaArchiveId_ = context_.GetMediaArchive().Add( |
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1410 new DynamicTemporaryFile(asynchronousTarget_.release())); |
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1411 } |
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1412 } |
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1413 |
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|
1414 |
|
3658
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Sebastien Jodogne <s.jodogne@gmail.com>
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changeset
|
1415 JobStepResult ArchiveJob::Step(const std::string& jobId) |
| 2632 | 1416 { |
| 1417 assert(writer_.get() != NULL); | |
| 1418 | |
| 1419 if (writer_->GetStepsCount() == 0) | |
| 1420 { | |
|
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|
1421 FinalizeTarget(); |
| 2632 | 1422 return JobStepResult::Success(); |
| 1423 } | |
| 1424 else | |
| 1425 { | |
|
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|
1426 try |
|
cdab941fe17d
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1427 { |
|
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|
1428 writer_->RunStep(currentStep_, transcode_, transferSyntax_); |
|
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1429 } |
|
cdab941fe17d
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|
1430 catch (Orthanc::OrthancException& e) |
|
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1431 { |
|
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|
1432 LOG(ERROR) << "Error while creating an archive: " << e.What(); |
|
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|
1433 writer_->CancelStream(); |
|
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|
1434 throw; |
|
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|
1435 } |
| 2632 | 1436 |
| 1437 currentStep_ ++; | |
| 1438 | |
| 1439 if (currentStep_ == writer_->GetStepsCount()) | |
| 1440 { | |
|
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|
1441 FinalizeTarget(); |
| 2632 | 1442 return JobStepResult::Success(); |
| 1443 } | |
| 1444 else | |
| 1445 { | |
|
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1446 archiveSize_ = writer_->GetArchiveSize(); |
| 2632 | 1447 return JobStepResult::Continue(); |
| 1448 } | |
| 1449 } | |
| 1450 } | |
| 1451 | |
| 1452 | |
|
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changeset
|
1453 void ArchiveJob::Stop(JobStopReason reason) |
|
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|
1454 { |
|
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changeset
|
1455 /** |
|
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changeset
|
1456 * New in Orthanc 1.9.3: Remove the temporary file associated with |
|
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changeset
|
1457 * the job as soon as its job gets canceled (especially visible in |
|
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changeset
|
1458 * asynchronous mode). |
|
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|
1459 **/ |
|
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|
1460 if (reason == JobStopReason_Canceled || |
|
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changeset
|
1461 reason == JobStopReason_Failure || |
|
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changeset
|
1462 reason == JobStopReason_Retry) |
|
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|
1463 { |
|
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|
1464 writer_->CancelStream(); |
|
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|
1465 |
|
4641
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changeset
|
1466 // First delete the writer, as it holds a reference to "(a)synchronousTarget_", cf. (*) |
|
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changeset
|
1467 writer_.reset(); |
|
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changeset
|
1468 |
|
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Fixed the lifetime of temporary files associated with jobs that create ZIP archive/media
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changeset
|
1469 synchronousTarget_.reset(); |
|
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changeset
|
1470 asynchronousTarget_.reset(); |
|
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|
1471 } |
|
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|
1472 } |
|
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|
1473 |
|
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|
1474 |
| 2632 | 1475 float ArchiveJob::GetProgress() |
| 1476 { | |
| 1477 if (writer_.get() == NULL || | |
| 1478 writer_->GetStepsCount() == 0) | |
| 1479 { | |
| 1480 return 1; | |
| 1481 } | |
| 1482 else | |
| 1483 { | |
| 1484 return (static_cast<float>(currentStep_) / | |
| 1485 static_cast<float>(writer_->GetStepsCount() - 1)); | |
| 1486 } | |
| 1487 } | |
| 1488 | |
| 1489 | |
| 1490 void ArchiveJob::GetJobType(std::string& target) | |
| 1491 { | |
| 1492 if (isMedia_) | |
| 1493 { | |
| 1494 target = "Media"; | |
| 1495 } | |
| 1496 else | |
| 1497 { | |
| 1498 target = "Archive"; | |
| 1499 } | |
| 1500 } | |
| 1501 | |
|
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|
1502 |
| 2632 | 1503 void ArchiveJob::GetPublicContent(Json::Value& value) |
| 1504 { | |
|
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|
1505 value = Json::objectValue; |
|
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|
1506 value[KEY_DESCRIPTION] = description_; |
|
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|
1507 value[KEY_INSTANCES_COUNT] = instancesCount_; |
|
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changeset
|
1508 value[KEY_UNCOMPRESSED_SIZE_MB] = |
| 2643 | 1509 static_cast<unsigned int>(uncompressedSize_ / MEGA_BYTES); |
|
4341
977c2759eb0a
Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
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changeset
|
1510 value[KEY_ARCHIVE_SIZE_MB] = |
|
977c2759eb0a
Archive/media jobs report the size of the created ZIP file in content field "ArchiveSizeMB"
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changeset
|
1511 static_cast<unsigned int>(archiveSize_ / MEGA_BYTES); |
|
3913
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transcoding ZIP archive and media
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changeset
|
1512 |
|
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changeset
|
1513 // New in Orthanc 1.9.4 |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1514 value[KEY_ARCHIVE_SIZE] = boost::lexical_cast<std::string>(archiveSize_); |
|
cdab941fe17d
ZIP archive/media generated in synchronous mode are now streamed by default
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changeset
|
1515 value[KEY_UNCOMPRESSED_SIZE] = boost::lexical_cast<std::string>(uncompressedSize_); |
|
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|
1516 |
|
3913
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transcoding ZIP archive and media
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changeset
|
1517 if (transcode_) |
|
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changeset
|
1518 { |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1519 value[KEY_TRANSCODE] = GetTransferSyntaxUid(transferSyntax_); |
|
6ddad3e0b569
transcoding ZIP archive and media
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
3713
diff
changeset
|
1520 } |
| 2632 | 1521 } |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1522 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1523 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1524 bool ArchiveJob::GetOutput(std::string& output, |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1525 MimeType& mime, |
|
4805
0a38000b086d
Archive jobs response now contains a header Content-Disposition:filename='archive.zip'
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1526 std::string& filename, |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1527 const std::string& key) |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1528 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1529 if (key == "archive" && |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1530 !mediaArchiveId_.empty()) |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1531 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1532 SharedArchive::Accessor accessor(context_.GetMediaArchive(), mediaArchiveId_); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1533 |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1534 if (accessor.IsValid()) |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1535 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1536 const DynamicTemporaryFile& f = dynamic_cast<DynamicTemporaryFile&>(accessor.GetItem()); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1537 f.GetFile().Read(output); |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1538 mime = MimeType_Zip; |
|
4805
0a38000b086d
Archive jobs response now contains a header Content-Disposition:filename='archive.zip'
Alain Mazy <am@osimis.io>
parents:
4674
diff
changeset
|
1539 filename = "archive.zip"; |
|
2976
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1540 return true; |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1541 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1542 else |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1543 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1544 return false; |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1545 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1546 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1547 else |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1548 { |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1549 return false; |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1550 } |
|
cb5d75143da0
Asynchronous generation of ZIP archives and DICOM medias
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
2966
diff
changeset
|
1551 } |
|
5310
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1552 |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1553 bool ArchiveJob::DeleteOutput(const std::string& key) |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1554 { |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1555 if (key == "archive" && |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1556 !mediaArchiveId_.empty()) |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1557 { |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1558 SharedArchive::Accessor accessor(context_.GetMediaArchive(), mediaArchiveId_); |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1559 |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1560 if (accessor.IsValid()) |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1561 { |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1562 context_.GetMediaArchive().Remove(mediaArchiveId_); |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1563 return true; |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1564 } |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1565 else |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1566 { |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1567 return false; |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1568 } |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1569 } |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1570 else |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1571 { |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1572 return false; |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1573 } |
|
b5c502bcaf99
added a route to DELETE /jobs/../archive
Alain Mazy <am@osimis.io>
parents:
5302
diff
changeset
|
1574 } |
|
5364
b5f2122a1334
Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents:
5310
diff
changeset
|
1575 |
|
b5f2122a1334
Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents:
5310
diff
changeset
|
1576 void ArchiveJob::DeleteAllOutputs() |
|
b5f2122a1334
Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents:
5310
diff
changeset
|
1577 { |
|
b5f2122a1334
Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents:
5310
diff
changeset
|
1578 DeleteOutput("archive"); |
|
b5f2122a1334
Added a route to delete completed jobs from history: DELETE /jobs/{id}
Alain Mazy <am@osimis.io>
parents:
5310
diff
changeset
|
1579 } |
| 2632 | 1580 } |