annotate TODO @ 5363:3c8286e5d07b multiple-jpeg-decoders

wip: try to add a jpeg decoder without colorspace conversion: not working now
author Alain Mazy <am@osimis.io>
date Tue, 11 Jul 2023 10:25:58 +0200
parents 0223315871e8
children b551e4fdc708 b074943fca35
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1 =======================
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2 === Orthanc Roadmap ===
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3 =======================
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4
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5 For higher-level ideas in the roadmap, please first read the
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6 "Contributing to Orthanc" section of the Orthanc Book:
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7 https://book.orthanc-server.com/contributing.html
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8
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9
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10 Some features are being funded by an OpenCollective one-time donations.
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11 selected features are marked with priorities ((1) - higher, (2) - medium, (3) - nice to have)
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12
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13 =======
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14 General
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15 =======
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16
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17 * Configure an user-defined site UID root if generating DICOM UIDs
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18 ("FromDcmtkBridge::GenerateUuid()")
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19 * Improve handling of errors in the command queue:
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20 https://groups.google.com/d/msg/orthanc-users/--njEbqcDDI/rBu8XL-Mm-cJ
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21 * Support partial file retrieval in Orthanc::HttpClient
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22 * Support retry counter in Orthanc::HttpClient
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23 * Option to enable DNS lookups in DICOM:
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24 https://hg.orthanc-server.com/orthanc/file/Orthanc-1.9.3/OrthancFramework/Sources/OrthancFramework.cpp#l88
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25 * Toolbox::ComputeMD5() fails on files larger than 4GB
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26 * Add an option to run Orthanc in read-only mode both for DICOM and for Rest API.
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27 * Logging: add some information like Thread-Id/job-id to contextualize the logs.
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28 For a DICOM Transfer, that would be nice to include the modality in the context + a study identifier or a job id.
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29 * (1) Accept extra DICOM tags dictionaries in the DCMTK format '.dic' (easier to use than declare
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30 them in the Orthanc configuration file). Even the standard dictionaries could be
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31 overriden by these custom dictionaries.
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32 * Provide more flexibility wrt Dicom TLS ciphers and TLS version:
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33 https://groups.google.com/g/orthanc-users/c/X4IhmXCSr7I/m/EirawAFcBwAJ
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34 Can maybe be achieved by adding a configuration to select the TLS Security Profile:
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35 https://github.com/DCMTK/dcmtk/blob/master/dcmtls/include/dcmtk/dcmtls/tlsciphr.h#L83
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36 (e.g: TSP_Profile_BCP195_ND instead of TSP_Profile_BCP195)
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37 * Add configurations to enable/disable warnings:
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38 - Modifying an instance while keeping its original SOPInstanceUID: This should be avoided!
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39 - Modifying a study while keeping its original StudyInstanceUID: This should be avoided!
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41
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42 ============================
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43 Documentation (Orthanc Book)
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44 ============================
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45
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46 * Write a getting started guide (step by step) for each platform to replace
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47 https://book.orthanc-server.com/users/cookbook.html :
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48 - Ubuntu/Debian
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49 - Windows
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50 - OSX
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51 - Docker on Linux
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52 Each step by step guide should contain:
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53 - get binaries
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54 - launch
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55 - open explorer
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56 - edit configuration file
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57 - restart and observe changes
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58
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59 * Explain how log rotation can be achieved (no built-in support in Orthanc)
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60 * Explain how to interface with Mirth/NextGen Connect
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61 https://en.wikipedia.org/wiki/NextGen_Connect
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62 * How to reproduce issues by replacing Orthanc with storescp or wlmscpfs
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63 * How to capture TCP traffic of DICOM protocol using tcpdump and Wireshark
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64 * Add more configurations of viewers (Weasis, Slicer...):
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65 https://book.orthanc-server.com/integrations.html
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66 * Discuss HL7 in a dedicated page:
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67 https://groups.google.com/d/msg/orthanc-users/4dt4992O0lQ/opTjTFU2BgAJ
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68 https://groups.google.com/g/orthanc-users/c/Spjtcj9vSPo/m/ktUArWxUDQAJ
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71 ================
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72 Orthanc Explorer
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73 ================
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74
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75 * Option to tune the number of results for a local lookup:
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76 https://groups.google.com/g/orthanc-users/c/LF39musq02Y/
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77
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79 ========
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80 REST API
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81 ========
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82
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83 ----------
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84 Short-term
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85 ----------
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86
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87
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88 --------
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89 Mid-term
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90 --------
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91
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92 * (1) Archive jobs: Resume downloads using "range requests":
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93 https://developer.mozilla.org/en-US/docs/Web/HTTP/Range_requests
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94 * (3) Create DICOM from DICOMweb JSON ("application/dicom+json")
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95 with "/tools/create-dicom"
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96 * (2) Create multi-frame images with /tools/create-dicom (by adding a
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97 "MultiFrame" flag to avoid creating a series), or modify PixelData
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98 of a multi-frame image:
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99 https://groups.google.com/g/orthanc-users/c/y3-xa_GcdLM/m/m0Kr5G5UPAAJ
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100 * (1) Specify the transfer syntax in /tools/create-dicom
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101 https://groups.google.com/g/orthanc-users/c/o15Dekecgds/m/xmPE2y3bAwAJ
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102 * Support Palette PNG in /tools/create-dicom:
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103 https://discourse.orthanc-server.org/t/404-on-tools-create-dicom-endpoint-with-specific-png/3562
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104 * (1) In the /studies/{id}/anonymize route, add an option to remove
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105 secondary captures. They usually contains Patient info in the
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106 image. The SOPClassUID might be used to identify such secondary
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107 captures.
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108 * Support "/preview" and "/matlab" for LUT color images
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109 * Try to transcode files if a simple decoding fails:
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110 https://groups.google.com/g/orthanc-users/c/b8168-NkAhA/m/Df3j-CO9CgAJ
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111 * (2) Ranges of DICOM tags for "Keep" and "Remove" in ".../modify" and ".../anonymize":
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112 https://groups.google.com/g/orthanc-users/c/6dETktKo9v8/m/b0LUvSfwAgAJ
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113 * return error code/reason in HTTP response if resubmit/cancel/pause fails ...
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114 * filter /changes by type e.g: /changes?filter=StablePatient
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115 https://groups.google.com/g/orthanc-users/c/r20kDb0axms/m/2tzbQzYJAgAJ
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116 * save more details in jobs e.g: the resources being sent/exported ...
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117 https://groups.google.com/g/orthanc-users/c/rDDusFG5Lco/m/TzTUjWXLAQAJ
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118 * allow filtering/ordering on the /jobs route:
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119 https://groups.google.com/g/orthanc-users/c/hsZ1jng5rIg/m/8xZL2C1VBgAJ
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120 * Also implement a GET variant of /tools/create-archive + sibling routes
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121 in which resources & transcode options are provided as get arguments.
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122 https://groups.google.com/g/orthanc-users/c/PmaRZ609ztA/m/JdwXvIBKAQAJ
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123 * Allow skiping automatic conversion of color-space in transcoding/decoding.
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124 The patch that was initialy provided was breaking the IngestTranscoding.
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125 https://discourse.orthanc-server.org/t/orthanc-convert-ybr-to-rgb-but-does-not-change-metadata/3533/9
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126
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128 ---------
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129 Long-term
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130 ---------
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131
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132 * Stick to the JSONapi or JAREST guidelines for a "v2" of the API:
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133 https://groups.google.com/forum/#!msg/orthanc-users/Bag-SwEE9ZI/-w7QXI6p7-oJ
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134 http://www.admiraalit.nl/jarest/
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135
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137 =====
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138 DICOM
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139 =====
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140
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141 --------
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142 Mid-term
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143 --------
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144
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145 * Support C-GET SCU (note that C-GET SCP was introduced in Orthanc 1.7.0)
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146 * Support "Retrieve AE Title" (0008,0054) in C-FIND:
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147 - On SCP side: done by https://hg.orthanc-server.com/orthanc/rev/1ec3e1e18f50
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148 - On SCU side:
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149 https://groups.google.com/d/msg/orthanc-users/wPl0g5mqZco/5X1Z8tEzBgAJ
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150 * Check Big Endian transfer syntax in ParsedDicomFile::EmbedImage and
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151 DicomImageDecoder
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152 * Strict hierarchical C-FIND:
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153 https://groups.google.com/d/msg/orthanc-users/VBHpeGVSNKM/tkaVvjWFBwAJ
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154 * report DIMSE error codes in Rest API and job status for /store /query /move /retrieve
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155 * report progress report of C-Move operation in jop progress. There are
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156 progress callbacks available in DIMSE_moveUser
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157 https://groups.google.com/g/orthanc-users/c/c8cGnA7FzsE/m/BSs66D8wBwAJ
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158 * Log outgoing C-Find queries
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159
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160 ---------
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161 Long-term
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162 ---------
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163
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164 * Support extended association (e.g. for C-Find relational queries):
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165 https://groups.google.com/d/msg/orthanc-users/xD4d3mpc6ms/srF7E2goAAAJ
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166 * Support C-MOVE-CANCEL:
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167 https://groups.google.com/d/msg/orthanc-users/KnduYBFd06A/o86cl5SeCAAJ
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168
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169 --------------------
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170 Internationalization
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171 --------------------
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172
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173 * Support multiple specific character sets (cf. "SCSH32" in orthanc-tests)
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174 - http://dicom.nema.org/medical/dicom/current/output/chtml/part03/sect_C.12.html#sect_C.12.1.1.2
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175 - Japanese test: http://dicom.nema.org/MEDICAL/dicom/2017c/output/chtml/part05/sect_H.3.2.html
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176 * Support Supplementary Kanji set (ISO 2022 IR 159)
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177 * Create DICOM files with multibyte encodings (Korean, JapaneseKanji, SimplifiedChinese)
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178
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179
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180 ===========
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181 Performance
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182 ===========
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183
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184 * (3) ServerContext::DicomCacheLocker => give access to the raw buffer,
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185 useful in ServerContext::DecodeDicomInstance()
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186 * (2) DicomMap: create a cache to the main DICOM tags index
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187 * (3) Check out rapidjson: https://github.com/miloyip/nativejson-benchmark
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188 * For C-Find results: we could store the computed tags
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189 in metadata on some events like NewSeries + DeletedSeries (same for other computer tags).
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190 OtherTags that could be saved in Metadata as well:
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191 - ModalitiesInStudy
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192 - all computed counters at series/study/patient level
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193 - RequestAttributesSequence (sequence that must be included in all DicomWeb QIDO-RS for series)
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194 * Investigate increase of CPU consumption while idle after anonymize/delete
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195 (https://discourse.orthanc-server.org/t/onchange-callbacks-and-cpu-loads/3534)
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196
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197 * Long-shot & not sure it is even feasible at all: try to reduce memory usage by implementing streaming
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198 when receiving DICOM instances from the Rest API or from DICOM and store files directly to disk as they
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199 are received. Note that this would likely require rewriting large parts of Orthanc. Note sure that
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200 would be compatible with Transcoding.
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201 Use case: receiving 10 1GB instances in parallel can consume up to 20 GB
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202 Alternative option 1: write an "external application/plugin" that would take care of these receptions, write the
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203 file at the right place and send a signal to Orthanc to "adopt" the file.
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204 Alternative option 2: declare a memory resource (X GB) that is available for reception. Every time
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205 Orthanc starts receiving a file, it reserves the memory or twice the memory (through a Semaphore)
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206 if no memory is available, it waits and possibly timeouts returning a 503 or DIMSE A700 (out of resources).
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207 This would at least protect from "out of memory" crashes.
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208 Alternative option 3: Configure DCMTK to "stream" DICOM files on a temporary file on disk. Pass the file handle
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209 to Orthanc and/or the Storage plugin (instead of passing a memory buffer) -> the object-storage plugin could
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210 "stream" the file to the storage. The HTTP server could also "stream" its response from file handles.
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211 Transcoding should be "file based" too.
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212
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213
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214 ========
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215 Database
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216 ========
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217
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218 * Integration test searching for "\" and "%" in PatientName, PatientID...
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219
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220
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221 =======
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222 Plugins
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223 =======
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224
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225 ---
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226 SDK
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227 ---
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228
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229 * Implement PluginsJob::GetOutput() to allow user-defined jobs to provide output:
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230 https://groups.google.com/g/orthanc-users/c/GZ7u0bTTVoo/m/Z7iTNTi2BgAJ
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231 * Add plugins for normalized operations (notably so as to support
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232 Print SCU/SCP, cf. "dcmprscp"):
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233 https://web.archive.org/web/20170923150432/https://www.medicalconnections.co.uk/kb/DICOM_Print_Service
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234 * Provide access to the Orthanc::DicomUserConnection class in plugins:
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235 https://groups.google.com/d/msg/orthanc-users/ycDA1xPuTRY/nsT2_GOtEgAJ
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236 * Provide a C++ callback similar to "ReceivedInstanceFilter()" in Lua
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237 https://book.orthanc-server.com/users/lua.html#filtering-incoming-dicom-instances
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238 https://groups.google.com/d/msg/orthanc-users/BtvLTE5Ni8A/vIMhmMgfBAAJ
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239 * In "OrthancPluginLog[Error|Warning|Info]()", prefix the log line with
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240 the name of the plugin, as retrieved by "OrthancPluginGetName()"
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241 * Update the SDK to handle buffer sizes > 4GB (all sizes are currently coded in uint32_t)
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242 * Add a C-Get SCP handler: OrthancPluginRegisterGetCallback
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243 https://groups.google.com/g/orthanc-users/c/NRhPkYX9IXQ/m/mWS11g0jBwAJ
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244 * Add a primitive for user authentication (to generate 401 HTTP status, whereas
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245 the "RegisterIncomingHttpRequestFilter()" can only generate 403 HTTP status)
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246 https://groups.google.com/g/orthanc-users/c/ymtaAmgSs6Q/m/PqVBactQAQAJ
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247
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248 ----------------
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249 Ideas of plugins
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250 ----------------
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251
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252 * DICOM-RT primitives (RT-STRUCT, RT-PLAN, RT-DOSE)
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253 * Converter to/from NIfTI
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254 * Decode JPEG2k with grok: https://github.com/GrokImageCompression/grok
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255 * Generate dynamic HTTP content using Lua:
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256 https://groups.google.com/d/msg/orthanc-users/KompazkxRSs/5Rh03mzgDAAJ
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257 * More generally, expose more callbacks of the plugin SDK in Lua:
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258 https://groups.google.com/d/msg/orthanc-users/_FbiRHuXPGM/J-OAv7zaCAAJ
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259 * Configuration interface plugin
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260
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261
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262 ===
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263 Lua
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264 ===
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265
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266 * Configure HTTP headers from Lua (in RestApiPost(), RestApiPut()
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267 and RestApiDelete().
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268 https://groups.google.com/forum/#!msg/orthanc-users/WNnW187OILM/6XX_bm96BwAJ
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269
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270
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271 ================
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272 Code refactoring
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273 ================
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274
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275 * Use Semaphore::Locker everywhere (instead of explicit
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276 Release() and Acquire())
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277 * Avoid direct calls to FromDcmtkBridge (make most of its
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278 methods private), go through ParsedDicomFile wherever possible
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279
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280
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281 =================
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282 Platform-specific
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283 =================
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284
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285 ---------
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286 Packaging
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287 ---------
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288
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289 * RHEL through EPEL (as of 2021, CentOS seems to be over):
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290 http://fedoraproject.org/wiki/EPEL_Package_Maintainers
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291 * Fedora: Are DICOM dictionaries correctly located?
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292 https://groups.google.com/g/orthanc-users/c/YB_LTBuUQNA/m/3H1xsrZJDgAJ
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293
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294 ------------------------
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295 Big-endian architectures
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296 ------------------------
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297
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298 * Check the generated 16bpp PNG images
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299
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300 -----------------
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301 Microsoft Windows
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302 -----------------
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303
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304 * Add compatibility with non-ASCII paths (Orthanc expresses its paths
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305 as UTF-8 strings, but Windows expects them to be translated to the
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306 system locale)
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307 * Fix error message when stopping the service:
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308 https://groups.google.com/g/orthanc-users/c/NyrwUJ9N6Ec/m/sTZIcWvaAgAJ
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309
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310
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311 ====
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312 Misc
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313 ====
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314
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315 -----------------
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316 Maintenance tools
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317 -----------------
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318
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319 * Standalone tool to detect corrupted files:
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320 https://groups.google.com/g/orthanc-users/c/KASEJ9Gx3vQ/m/MIJFJdRhAwAJ
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321 * Standalone tool to detect orphan files in OrthancStorage
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322
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323 ----------------------------------
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324 Code quality and integration tests
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325 ----------------------------------
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326
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327 * Have a look at openQA (cf. GNU Health)
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328 * Add integration tests for LUT
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329 * Add more complex testing scenarios like data-migration, change of
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330 configuration files, multiple orthanc interacting togethers with various
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331 config. This should probably look like the python toolbox tests ...
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332 - add a test to validate Modalities and Peers stored in DB are not lost
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333 while upgrading from one version to the other (Sylvain)
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334 * On Ubuntu 20.04, accesses to unitialized memory are sometimes
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335 reported in libgjpeg by valgrind, if running the following command
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336 (this is probably unrelated to Orthanc):
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337 $ ./Start.sh --force Orthanc.test_bitbucket_issue_141 Orthanc.test_create_pdf Orthanc.test_decode_brainix_as_jpeg
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338
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339
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340 ---------------------
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341 External applications
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342 ---------------------
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343
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344 * Create REST bindings with Slicer
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345 * Create REST bindings with Horos/OsiriX