Mercurial > hg > orthanc

annotate OrthancServer/Sources/Database/Compatibility/DatabaseLookup.cpp @ 5464:38f1d06875ad pg-transactions

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author Alain Mazy <am@osimis.io>
date Tue, 12 Dec 2023 17:20:10 +0100
parents 0ea402b4d901
children 48b8dae6dc77
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium
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7 *
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8 * This program is free software: you can redistribute it and/or
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9 * modify it under the terms of the GNU General Public License as
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10 * published by the Free Software Foundation, either version 3 of the
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11 * License, or (at your option) any later version.
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12 *
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13 * This program is distributed in the hope that it will be useful, but
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14 * WITHOUT ANY WARRANTY; without even the implied warranty of
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15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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16 * General Public License for more details.
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17 *
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18 * You should have received a copy of the GNU General Public License
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19 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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20 **/
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21
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22
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23 #include "../../PrecompiledHeadersServer.h"
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24 #include "DatabaseLookup.h"
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25
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26 #include "../../../../OrthancFramework/Sources/OrthancException.h"
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27 #include "../../Search/DicomTagConstraint.h"
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28 #include "../../ServerToolbox.h"
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29 #include "SetOfResources.h"
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30
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31 namespace Orthanc
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32 {
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33 namespace Compatibility
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34 {
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35 namespace
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36 {
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37 // Anonymous namespace to avoid clashes between compiler modules
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38 class MainTagsConstraints : boost::noncopyable
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39 {
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40 private:
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41 std::vector<DicomTagConstraint*> constraints_;
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42
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43 public:
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44 ~MainTagsConstraints()
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45 {
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46 for (size_t i = 0; i < constraints_.size(); i++)
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47 {
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48 assert(constraints_[i] != NULL);
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49 delete constraints_[i];
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50 }
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51 }
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52
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53 void Reserve(size_t n)
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54 {
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55 constraints_.reserve(n);
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56 }
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57
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58 size_t GetSize() const
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59 {
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60 return constraints_.size();
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61 }
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62
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63 DicomTagConstraint& GetConstraint(size_t i) const
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64 {
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65 if (i >= constraints_.size())
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66 {
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67 throw OrthancException(ErrorCode_ParameterOutOfRange);
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68 }
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69 else
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70 {
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71 assert(constraints_[i] != NULL);
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72 return *constraints_[i];
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73 }
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74 }
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75
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76 void Add(const DatabaseConstraint& constraint)
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77 {
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78 constraints_.push_back(new DicomTagConstraint(constraint));
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79 }
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80 };
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81 }
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82
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83
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84 static void ApplyIdentifierConstraint(SetOfResources& candidates,
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85 ILookupResources& compatibility,
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86 const DatabaseConstraint& constraint,
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87 ResourceType level)
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88 {
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89 std::list<int64_t> matches;
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90
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91 switch (constraint.GetConstraintType())
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92 {
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93 case ConstraintType_Equal:
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94 compatibility.LookupIdentifier(matches, level, constraint.GetTag(),
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95 IdentifierConstraintType_Equal, constraint.GetSingleValue());
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96 break;
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97
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98 case ConstraintType_SmallerOrEqual:
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99 compatibility.LookupIdentifier(matches, level, constraint.GetTag(),
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100 IdentifierConstraintType_SmallerOrEqual, constraint.GetSingleValue());
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101 break;
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102
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103 case ConstraintType_GreaterOrEqual:
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104 compatibility.LookupIdentifier(matches, level, constraint.GetTag(),
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105 IdentifierConstraintType_GreaterOrEqual, constraint.GetSingleValue());
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106
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107 break;
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108
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109 case ConstraintType_Wildcard:
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110 compatibility.LookupIdentifier(matches, level, constraint.GetTag(),
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111 IdentifierConstraintType_Wildcard, constraint.GetSingleValue());
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112
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113 break;
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114
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115 case ConstraintType_List:
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116 for (size_t i = 0; i < constraint.GetValuesCount(); i++)
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117 {
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118 std::list<int64_t> tmp;
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119 compatibility.LookupIdentifier(tmp, level, constraint.GetTag(),
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120 IdentifierConstraintType_Wildcard, constraint.GetValue(i));
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121 matches.splice(matches.end(), tmp);
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122 }
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123
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124 break;
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125
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126 default:
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127 throw OrthancException(ErrorCode_InternalError);
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128 }
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129
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130 candidates.Intersect(matches);
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131 }
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132
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133
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134 static void ApplyIdentifierRange(SetOfResources& candidates,
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135 ILookupResources& compatibility,
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136 const DatabaseConstraint& smaller,
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137 const DatabaseConstraint& greater,
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138 ResourceType level)
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139 {
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140 assert(smaller.GetConstraintType() == ConstraintType_SmallerOrEqual &&
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141 greater.GetConstraintType() == ConstraintType_GreaterOrEqual &&
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142 smaller.GetTag() == greater.GetTag() &&
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143 ServerToolbox::IsIdentifier(smaller.GetTag(), level));
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144
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145 std::list<int64_t> matches;
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146 compatibility.LookupIdentifierRange(matches, level, smaller.GetTag(),
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147 greater.GetSingleValue(), smaller.GetSingleValue());
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148 candidates.Intersect(matches);
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149 }
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150
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151
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152 static void ApplyLevel(SetOfResources& candidates,
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153 IDatabaseWrapper::ITransaction& transaction,
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154 ILookupResources& compatibility,
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155 const std::vector<DatabaseConstraint>& lookup,
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156 ResourceType level)
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157 {
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158 typedef std::set<const DatabaseConstraint*> SetOfConstraints;
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159 typedef std::map<DicomTag, SetOfConstraints> Identifiers;
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160
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161 // (1) Select which constraints apply to this level, and split
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162 // them between "identifier tags" constraints and "main DICOM
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163 // tags" constraints
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164
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165 Identifiers identifiers;
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166 SetOfConstraints mainTags;
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167
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168 for (size_t i = 0; i < lookup.size(); i++)
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169 {
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170 if (lookup[i].GetLevel() == level)
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171 {
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172 if (lookup[i].IsIdentifier())
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173 {
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174 identifiers[lookup[i].GetTag()].insert(&lookup[i]);
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175 }
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176 else
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177 {
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178 mainTags.insert(&lookup[i]);
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179 }
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180 }
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181 }
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182
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183
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184 // (2) Apply the constraints over the identifiers
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185
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186 for (Identifiers::const_iterator it = identifiers.begin();
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187 it != identifiers.end(); ++it)
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188 {
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189 // Check whether some range constraint over identifiers is
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190 // present at this level
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191 const DatabaseConstraint* smaller = NULL;
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192 const DatabaseConstraint* greater = NULL;
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193
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194 for (SetOfConstraints::const_iterator it2 = it->second.begin();
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195 it2 != it->second.end(); ++it2)
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196 {
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197 assert(*it2 != NULL);
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198
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199 if ((*it2)->GetConstraintType() == ConstraintType_SmallerOrEqual)
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200 {
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201 smaller = *it2;
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202 }
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203
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204 if ((*it2)->GetConstraintType() == ConstraintType_GreaterOrEqual)
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205 {
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206 greater = *it2;
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207 }
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208 }
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209
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210 if (smaller != NULL &&
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211 greater != NULL)
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212 {
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213 // There is a range constraint: Apply it, as it is more efficient
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214 ApplyIdentifierRange(candidates, compatibility, *smaller, *greater, level);
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215 }
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216 else
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217 {
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218 smaller = NULL;
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219 greater = NULL;
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220 }
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221
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222 for (SetOfConstraints::const_iterator it2 = it->second.begin();
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223 it2 != it->second.end(); ++it2)
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224 {
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225 // Check to avoid applying twice the range constraint
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226 if (*it2 != smaller &&
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227 *it2 != greater)
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228 {
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229 ApplyIdentifierConstraint(candidates, compatibility, **it2, level);
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230 }
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231 }
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232 }
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233
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234
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235 // (3) Apply the constraints over the main DICOM tags (no index
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236 // here, so this is less efficient than filtering over the
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237 // identifiers)
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238 if (!mainTags.empty())
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239 {
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240 MainTagsConstraints c;
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241 c.Reserve(mainTags.size());
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242
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243 for (SetOfConstraints::const_iterator it = mainTags.begin();
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244 it != mainTags.end(); ++it)
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245 {
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246 assert(*it != NULL);
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247 c.Add(**it);
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248 }
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249
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250 std::list<int64_t> source;
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251 candidates.Flatten(compatibility, source);
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252 candidates.Clear();
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253
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254 std::list<int64_t> filtered;
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255 for (std::list<int64_t>::const_iterator candidate = source.begin();
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256 candidate != source.end(); ++candidate)
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257 {
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258 DicomMap tags;
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259 transaction.GetMainDicomTags(tags, *candidate);
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260
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diff changeset
261 bool match = true;
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262
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263 for (size_t i = 0; i < c.GetSize(); i++)
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264 {
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265 if (!c.GetConstraint(i).IsMatch(tags))
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266 {
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267 match = false;
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268 break;
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269 }
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270 }
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271
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272 if (match)
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273 {
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274 filtered.push_back(*candidate);
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275 }
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276 }
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277
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diff changeset
278 candidates.Intersect(filtered);
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279 }
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280 }
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281
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282
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283 static std::string GetOneInstance(IDatabaseWrapper::ITransaction& compatibility,
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284 int64_t resource,
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285 ResourceType level)
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286 {
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287 for (int i = level; i < ResourceType_Instance; i++)
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288 {
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289 assert(compatibility.GetResourceType(resource) == static_cast<ResourceType>(i));
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290
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291 std::list<int64_t> children;
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292 compatibility.GetChildrenInternalId(children, resource);
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293
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294 if (children.empty())
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295 {
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296 throw OrthancException(ErrorCode_Database);
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297 }
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298
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299 resource = children.front();
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300 }
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301
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302 return compatibility.GetPublicId(resource);
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303 }
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304
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305
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306 void DatabaseLookup::ApplyLookupResources(std::list<std::string>& resourcesId,
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307 std::list<std::string>* instancesId,
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308 const std::vector<DatabaseConstraint>& lookup,
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309 ResourceType queryLevel,
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310 size_t limit)
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311 {
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312 // This is a re-implementation of
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313 // "../../../Resources/Graveyard/DatabaseOptimizations/LookupResource.cpp"
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314
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315 assert(ResourceType_Patient < ResourceType_Study &&
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316 ResourceType_Study < ResourceType_Series &&
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317 ResourceType_Series < ResourceType_Instance);
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318
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319 ResourceType upperLevel = queryLevel;
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320 ResourceType lowerLevel = queryLevel;
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321
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322 for (size_t i = 0; i < lookup.size(); i++)
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323 {
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324 ResourceType level = lookup[i].GetLevel();
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325
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326 if (level < upperLevel)
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327 {
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328 upperLevel = level;
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329 }
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330
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331 if (level > lowerLevel)
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332 {
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333 lowerLevel = level;
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334 }
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335 }
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336
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337 assert(upperLevel <= queryLevel &&
3f986ce336c8 working on Compatibility::DatabaseLookup
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338 queryLevel <= lowerLevel);
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339
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340 SetOfResources candidates(transaction_, upperLevel);
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341
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342 for (int level = upperLevel; level <= lowerLevel; level++)
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343 {
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344 ApplyLevel(candidates, transaction_, compatibility_, lookup, static_cast<ResourceType>(level));
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345
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346 if (level != lowerLevel)
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347 {
3f986ce336c8 working on Compatibility::DatabaseLookup
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348 candidates.GoDown();
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349 }
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350 }
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351
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352 std::list<int64_t> resources;
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353 candidates.Flatten(compatibility_, resources);
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354
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355 // Climb up, up to queryLevel
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diff changeset
356
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diff changeset
357 for (int level = lowerLevel; level > queryLevel; level--)
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358 {
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359 std::list<int64_t> parents;
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360 for (std::list<int64_t>::const_iterator
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diff changeset
361 it = resources.begin(); it != resources.end(); ++it)
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diff changeset
362 {
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diff changeset
363 int64_t parent;
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diff changeset
364 if (transaction_.LookupParent(parent, *it))
3053
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diff changeset
365 {
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diff changeset
366 parents.push_back(parent);
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diff changeset
367 }
3f986ce336c8 working on Compatibility::DatabaseLookup
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diff changeset
368 }
3f986ce336c8 working on Compatibility::DatabaseLookup
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diff changeset
369
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diff changeset
370 resources.swap(parents);
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diff changeset
371 }
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parents: 3052
diff changeset
372
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diff changeset
373 // Apply the limit, if given
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diff changeset
374
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diff changeset
375 if (limit != 0 &&
3f986ce336c8 working on Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3052
diff changeset
376 resources.size() > limit)
3f986ce336c8 working on Compatibility::DatabaseLookup
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diff changeset
377 {
3f986ce336c8 working on Compatibility::DatabaseLookup
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diff changeset
378 resources.resize(limit);
3f986ce336c8 working on Compatibility::DatabaseLookup
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diff changeset
379 }
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parents: 3052
diff changeset
380
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diff changeset
381 // Get the public ID of all the selected resources
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diff changeset
382
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diff changeset
383 size_t pos = 0;
3f986ce336c8 working on Compatibility::DatabaseLookup
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parents: 3052
diff changeset
384
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diff changeset
385 for (std::list<int64_t>::const_iterator
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parents: 3052
diff changeset
386 it = resources.begin(); it != resources.end(); ++it, pos++)
3f986ce336c8 working on Compatibility::DatabaseLookup
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parents: 3052
diff changeset
387 {
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diff changeset
388 assert(transaction_.GetResourceType(*it) == queryLevel);
3053
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diff changeset
389
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diff changeset
390 const std::string resource = transaction_.GetPublicId(*it);
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diff changeset
391 resourcesId.push_back(resource);
3053
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diff changeset
392
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parents: 3052
diff changeset
393 if (instancesId != NULL)
3f986ce336c8 working on Compatibility::DatabaseLookup
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parents: 3052
diff changeset
394 {
3f986ce336c8 working on Compatibility::DatabaseLookup
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parents: 3052
diff changeset
395 if (queryLevel == ResourceType_Instance)
3f986ce336c8 working on Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3052
diff changeset
396 {
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diff changeset
397 // The resource is itself the instance
ead8576a02ef IDatabaseWrapper::ApplyLookupResources now returns lists
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diff changeset
398 instancesId->push_back(resource);
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diff changeset
399 }
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parents: 3052
diff changeset
400 else
3f986ce336c8 working on Compatibility::DatabaseLookup
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parents: 3052
diff changeset
401 {
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diff changeset
402 // Collect one child instance for each of the selected resources
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parents: 4437
diff changeset
403 instancesId->push_back(GetOneInstance(transaction_, *it, queryLevel));
3053
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diff changeset
404 }
3f986ce336c8 working on Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3052
diff changeset
405 }
3f986ce336c8 working on Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents: 3052
diff changeset
406 }
3052
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Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
407 }
c7db469bbe8e new class: Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
408 }
c7db469bbe8e new class: Compatibility::DatabaseLookup
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff changeset
409 }