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annotate OrthancServer/Search/Compatibility/DatabaseLookup.cpp @ 3054:3638de45a08c db-changes

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backward compatibility with filtering identifiers
author Sebastien Jodogne <s.jodogne@gmail.com>
date Fri, 21 Dec 2018 12:45:24 +0100
parents 3f986ce336c8
children 71ac4f28176f
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1 /**
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2 * Orthanc - A Lightweight, RESTful DICOM Store
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3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics
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4 * Department, University Hospital of Liege, Belgium
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5 * Copyright (C) 2017-2018 Osimis S.A., Belgium
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6 *
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7 * This program is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License as
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9 * published by the Free Software Foundation, either version 3 of the
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10 * License, or (at your option) any later version.
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11 *
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12 * In addition, as a special exception, the copyright holders of this
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13 * program give permission to link the code of its release with the
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14 * OpenSSL project's "OpenSSL" library (or with modified versions of it
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15 * that use the same license as the "OpenSSL" library), and distribute
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16 * the linked executables. You must obey the GNU General Public License
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17 * in all respects for all of the code used other than "OpenSSL". If you
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18 * modify file(s) with this exception, you may extend this exception to
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19 * your version of the file(s), but you are not obligated to do so. If
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20 * you do not wish to do so, delete this exception statement from your
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21 * version. If you delete this exception statement from all source files
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22 * in the program, then also delete it here.
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23 *
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24 * This program is distributed in the hope that it will be useful, but
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25 * WITHOUT ANY WARRANTY; without even the implied warranty of
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26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
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27 * General Public License for more details.
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28 *
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29 * You should have received a copy of the GNU General Public License
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30 * along with this program. If not, see <http://www.gnu.org/licenses/>.
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31 **/
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32
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33
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34 #include "../../PrecompiledHeadersServer.h"
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35 #include "DatabaseLookup.h"
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36
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37 #include "../../../Core/OrthancException.h"
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38 #include "../../ServerToolbox.h"
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39 #include "SetOfResources.h"
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40
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41 namespace Orthanc
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42 {
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43 namespace Compatibility
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44 {
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45 static void ApplyIdentifierConstraint(SetOfResources& candidates,
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46 CompatibilityDatabaseWrapper& database,
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47 const DatabaseConstraint& constraint,
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48 ResourceType level)
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49 {
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50 std::list<int64_t> matches;
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51
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52 switch (constraint.GetConstraintType())
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53 {
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54 case ConstraintType_Equal:
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55 database.LookupIdentifier(matches, level, constraint.GetTag(),
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56 IdentifierConstraintType_Equal, constraint.GetSingleValue());
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57 break;
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58
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59 case ConstraintType_SmallerOrEqual:
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60 database.LookupIdentifier(matches, level, constraint.GetTag(),
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61 IdentifierConstraintType_SmallerOrEqual, constraint.GetSingleValue());
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62 break;
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63
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64 case ConstraintType_GreaterOrEqual:
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65 database.LookupIdentifier(matches, level, constraint.GetTag(),
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66 IdentifierConstraintType_GreaterOrEqual, constraint.GetSingleValue());
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67
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68 break;
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69
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70 case ConstraintType_Wildcard:
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71 database.LookupIdentifier(matches, level, constraint.GetTag(),
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72 IdentifierConstraintType_Wildcard, constraint.GetSingleValue());
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73
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74 break;
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75
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76 case ConstraintType_List:
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77 {
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78 for (size_t i = 0; i < constraint.GetValuesCount(); i++)
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79 {
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80 std::list<int64_t> tmp;
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81 database.LookupIdentifier(tmp, level, constraint.GetTag(),
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82 IdentifierConstraintType_Wildcard, constraint.GetValue(i));
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83 matches.splice(matches.end(), tmp);
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84 }
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85
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86 break;
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87 }
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88
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89 default:
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90 throw OrthancException(ErrorCode_InternalError);
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91 }
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92
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93 candidates.Intersect(matches);
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94 }
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95
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96
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97 static void ApplyIdentifierRange(SetOfResources& candidates,
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98 CompatibilityDatabaseWrapper& database,
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99 const DatabaseConstraint& smaller,
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100 const DatabaseConstraint& greater,
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101 ResourceType level)
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102 {
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103 assert(smaller.GetConstraintType() == ConstraintType_SmallerOrEqual &&
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104 greater.GetConstraintType() == ConstraintType_GreaterOrEqual &&
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105 smaller.GetTag() == greater.GetTag() &&
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106 ServerToolbox::IsIdentifier(smaller.GetTag(), level));
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107
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108 std::list<int64_t> matches;
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109 database.LookupIdentifierRange(matches, level, smaller.GetTag(),
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110 greater.GetSingleValue(), smaller.GetSingleValue());
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111 candidates.Intersect(matches);
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112 }
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113
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114
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115 static void ApplyLevel(SetOfResources& candidates,
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116 CompatibilityDatabaseWrapper& database,
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117 const std::vector<DatabaseConstraint>& lookup,
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118 ResourceType level)
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119 {
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120 typedef std::set<const DatabaseConstraint*> SetOfConstraints;
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121 typedef std::map<DicomTag, SetOfConstraints> Identifiers;
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122
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123 Identifiers identifiers;
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124 SetOfConstraints mainTags;
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125
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126 for (size_t i = 0; i < lookup.size(); i++)
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127 {
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128 if (lookup[i].GetLevel() == level)
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129 {
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130 if (lookup[i].IsIdentifier())
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131 {
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132 identifiers[lookup[i].GetTag()].insert(&lookup[i]);
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133 }
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134 else
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135 {
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136 mainTags.insert(&lookup[i]);
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137 }
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138 }
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139 }
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140
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141 for (Identifiers::const_iterator it = identifiers.begin();
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142 it != identifiers.end(); ++it)
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143 {
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144 const DatabaseConstraint* smaller = NULL;
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145 const DatabaseConstraint* greater = NULL;
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146
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147 for (SetOfConstraints::const_iterator it2 = it->second.begin();
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148 it2 != it->second.end(); ++it2)
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149 {
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150 if ((*it2)->GetConstraintType() == ConstraintType_SmallerOrEqual)
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151 {
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152 smaller = *it2;
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153 }
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154
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155 if ((*it2)->GetConstraintType() == ConstraintType_GreaterOrEqual)
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156 {
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157 greater = *it2;
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158 }
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159 }
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160
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161 if (smaller != NULL &&
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162 greater != NULL)
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163 {
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164 ApplyIdentifierRange(candidates, database, *smaller, *greater, level);
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165 }
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166 else
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167 {
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168 smaller = NULL;
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169 greater = NULL;
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170 }
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171
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172 for (SetOfConstraints::const_iterator it2 = it->second.begin();
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173 it2 != it->second.end(); ++it2)
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174 {
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175 if (*it2 != smaller &&
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176 *it2 != greater)
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177 {
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178 ApplyIdentifierConstraint(candidates, database, **it2, level);
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179 }
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180 }
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181 }
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182
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183
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184 // TODO - Fiter main DICOM tags
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185 }
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186
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187
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188 static std::string GetOneInstance(IDatabaseWrapper& database,
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189 int64_t resource,
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190 ResourceType level)
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191 {
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192 for (int i = level; i < ResourceType_Instance; i++)
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193 {
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194 assert(database.GetResourceType(resource) == static_cast<ResourceType>(i));
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195
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196 std::list<int64_t> children;
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197 database.GetChildrenInternalId(children, resource);
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198
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199 if (children.empty())
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200 {
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201 throw OrthancException(ErrorCode_Database);
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202 }
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203
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204 resource = children.front();
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205 }
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206
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207 return database.GetPublicId(resource);
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208 }
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209
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210
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211 void DatabaseLookup::ApplyLookupResources(std::vector<std::string>& resourcesId,
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212 std::vector<std::string>* instancesId,
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213 const std::vector<DatabaseConstraint>& lookup,
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214 ResourceType queryLevel,
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215 size_t limit)
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216 {
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217 // This is a re-implementation of
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218 // "../../../Resources/Graveyard/DatabaseOptimizations/LookupResource.cpp"
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219
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220 assert(ResourceType_Patient < ResourceType_Study &&
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221 ResourceType_Study < ResourceType_Series &&
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222 ResourceType_Series < ResourceType_Instance);
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223
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224 ResourceType upperLevel = queryLevel;
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225 ResourceType lowerLevel = queryLevel;
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226
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227 for (size_t i = 0; i < lookup.size(); i++)
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228 {
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229 ResourceType level = lookup[i].GetLevel();
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230
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231 if (level < upperLevel)
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232 {
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233 upperLevel = level;
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234 }
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235
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236 if (level > lowerLevel)
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237 {
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238 lowerLevel = level;
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239 }
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240 }
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241
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242 assert(upperLevel <= queryLevel &&
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243 queryLevel <= lowerLevel);
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244
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245 SetOfResources candidates(database_, upperLevel);
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246
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247 for (int level = upperLevel; level <= lowerLevel; level++)
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248 {
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249 ApplyLevel(candidates, database_, lookup, static_cast<ResourceType>(level));
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250
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251 if (level != lowerLevel)
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252 {
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253 candidates.GoDown();
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254 }
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255 }
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256
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257 std::list<int64_t> resources;
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258 candidates.Flatten(resources);
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259
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260 // Climb up, up to queryLevel
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261
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262 for (int level = lowerLevel; level > queryLevel; level--)
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263 {
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264 std::list<int64_t> parents;
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265 for (std::list<int64_t>::const_iterator
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266 it = resources.begin(); it != resources.end(); ++it)
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267 {
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268 int64_t parent;
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269 if (database_.LookupParent(parent, *it))
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270 {
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271 parents.push_back(parent);
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272 }
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273 }
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274
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275 resources.swap(parents);
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276 }
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277
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278 // Apply the limit, if given
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279
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280 if (limit != 0 &&
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281 resources.size() > limit)
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282 {
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283 resources.resize(limit);
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284 }
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285
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286 // Get the public ID of all the selected resources
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287
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288 resourcesId.resize(resources.size());
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289
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290 if (instancesId != NULL)
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291 {
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292 instancesId->resize(resources.size());
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293 }
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294
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295 size_t pos = 0;
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296
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297 for (std::list<int64_t>::const_iterator
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298 it = resources.begin(); it != resources.end(); ++it, pos++)
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299 {
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300 assert(database_.GetResourceType(*it) == queryLevel);
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301
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302 resourcesId[pos] = database_.GetPublicId(*it);
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303
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304 if (instancesId != NULL)
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305 {
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306 // Collect one child instance for each of the selected resources
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307 if (queryLevel == ResourceType_Instance)
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308 {
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309 (*instancesId) [pos] = resourcesId[pos];
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310 }
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311 else
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312 {
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313 (*instancesId) [pos] = GetOneInstance(database_, *it, queryLevel);
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314 }
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315 }
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316 }
3052
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317 }
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318 }
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319 }