Mercurial > hg > orthanc
annotate OrthancFramework/Sources/FileStorage/FilesystemStorage.cpp @ 5195:32df369198ac
fix /tools/reset crashing when ExtraMainDicomTags were defined
| author | Alain Mazy <am@osimis.io> |
|---|---|
| date | Tue, 28 Mar 2023 10:48:13 +0200 |
| parents | 0ea402b4d901 |
| children | b216b57bbe6a |
| rev | line source |
|---|---|
| 0 | 1 /** |
| 59 | 2 * Orthanc - A Lightweight, RESTful DICOM Store |
| 1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2023 Osimis S.A., Belgium |
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6 * Copyright (C) 2021-2023 Sebastien Jodogne, ICTEAM UCLouvain, Belgium |
| 0 | 7 * |
| 8 * This program is free software: you can redistribute it and/or | |
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9 * modify it under the terms of the GNU Lesser General Public License |
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10 * as published by the Free Software Foundation, either version 3 of |
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11 * the License, or (at your option) any later version. |
| 136 | 12 * |
| 0 | 13 * This program is distributed in the hope that it will be useful, but |
| 14 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
| 15 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
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16 * Lesser General Public License for more details. |
| 0 | 17 * |
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18 * You should have received a copy of the GNU Lesser General Public |
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19 * License along with this program. If not, see |
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20 * <http://www.gnu.org/licenses/>. |
| 0 | 21 **/ |
| 22 | |
| 23 | |
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24 #include "../PrecompiledHeaders.h" |
| 1123 | 25 #include "FilesystemStorage.h" |
| 0 | 26 |
| 27 // http://stackoverflow.com/questions/1576272/storing-large-number-of-files-in-file-system | |
| 28 // http://stackoverflow.com/questions/446358/storing-a-large-number-of-images | |
| 29 | |
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30 #include "../Logging.h" |
| 234 | 31 #include "../OrthancException.h" |
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32 #include "../StringMemoryBuffer.h" |
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33 #include "../SystemToolbox.h" |
| 234 | 34 #include "../Toolbox.h" |
| 0 | 35 |
| 36 #include <boost/filesystem/fstream.hpp> | |
| 1397 | 37 |
| 0 | 38 |
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39 static std::string ToString(const boost::filesystem::path& p) |
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40 { |
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41 #if BOOST_HAS_FILESYSTEM_V3 == 1 |
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42 return p.filename().string(); |
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43 #else |
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44 return p.filename(); |
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45 #endif |
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46 } |
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47 |
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48 |
| 59 | 49 namespace Orthanc |
| 0 | 50 { |
| 1123 | 51 boost::filesystem::path FilesystemStorage::GetPath(const std::string& uuid) const |
| 0 | 52 { |
| 53 namespace fs = boost::filesystem; | |
| 54 | |
| 55 if (!Toolbox::IsUuid(uuid)) | |
| 56 { | |
| 59 | 57 throw OrthancException(ErrorCode_ParameterOutOfRange); |
| 0 | 58 } |
| 59 | |
| 60 fs::path path = root_; | |
| 61 | |
| 62 path /= std::string(&uuid[0], &uuid[2]); | |
| 63 path /= std::string(&uuid[2], &uuid[4]); | |
| 64 path /= uuid; | |
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65 |
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66 #if BOOST_HAS_FILESYSTEM_V3 == 1 |
| 0 | 67 path.make_preferred(); |
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68 #endif |
| 0 | 69 |
| 70 return path; | |
| 71 } | |
| 72 | |
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73 void FilesystemStorage::Setup(const std::string& root) |
| 0 | 74 { |
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75 //root_ = boost::filesystem::absolute(root).string(); |
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76 root_ = root; |
| 0 | 77 |
| 2140 | 78 SystemToolbox::MakeDirectory(root); |
| 0 | 79 } |
| 80 | |
| 4300 | 81 FilesystemStorage::FilesystemStorage(const std::string &root) : |
| 82 fsyncOnWrite_(false) | |
| 83 { | |
| 84 Setup(root); | |
| 85 } | |
| 86 | |
| 87 FilesystemStorage::FilesystemStorage(const std::string &root, | |
| 88 bool fsyncOnWrite) : | |
| 89 fsyncOnWrite_(fsyncOnWrite) | |
| 90 { | |
| 91 Setup(root); | |
| 92 } | |
| 93 | |
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94 |
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95 |
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96 static const char* GetDescriptionInternal(FileContentType content) |
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97 { |
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98 // This function is for logging only (internal use), a more |
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99 // fully-featured version is available in ServerEnumerations.cpp |
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100 switch (content) |
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101 { |
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102 case FileContentType_Unknown: |
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103 return "Unknown"; |
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104 |
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105 case FileContentType_Dicom: |
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106 return "DICOM"; |
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107 |
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108 case FileContentType_DicomAsJson: |
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109 return "JSON summary of DICOM"; |
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110 |
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111 case FileContentType_DicomUntilPixelData: |
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112 return "DICOM until pixel data"; |
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113 |
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114 default: |
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115 return "User-defined"; |
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116 } |
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117 } |
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118 |
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119 |
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120 void FilesystemStorage::Create(const std::string& uuid, |
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121 const void* content, |
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122 size_t size, |
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123 FileContentType type) |
| 0 | 124 { |
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125 LOG(INFO) << "Creating attachment \"" << uuid << "\" of \"" << GetDescriptionInternal(type) |
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126 << "\" type (size: " << (size / (1024 * 1024) + 1) << "MB)"; |
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127 |
| 0 | 128 boost::filesystem::path path; |
| 129 | |
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130 path = GetPath(uuid); |
| 0 | 131 |
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132 if (boost::filesystem::exists(path)) |
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133 { |
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134 // Extremely unlikely case: This Uuid has already been created |
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135 // in the past. |
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136 throw OrthancException(ErrorCode_InternalError); |
| 0 | 137 } |
| 138 | |
| 139 if (boost::filesystem::exists(path.parent_path())) | |
| 140 { | |
| 141 if (!boost::filesystem::is_directory(path.parent_path())) | |
| 142 { | |
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143 throw OrthancException(ErrorCode_DirectoryOverFile); |
| 0 | 144 } |
| 145 } | |
| 146 else | |
| 147 { | |
| 148 if (!boost::filesystem::create_directories(path.parent_path())) | |
| 149 { | |
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150 throw OrthancException(ErrorCode_FileStorageCannotWrite); |
| 0 | 151 } |
| 152 } | |
| 153 | |
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154 SystemToolbox::WriteFile(content, size, path.string(), fsyncOnWrite_); |
| 0 | 155 } |
| 156 | |
| 157 | |
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158 IMemoryBuffer* FilesystemStorage::Read(const std::string& uuid, |
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159 FileContentType type) |
| 0 | 160 { |
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161 LOG(INFO) << "Reading attachment \"" << uuid << "\" of \"" << GetDescriptionInternal(type) |
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162 << "\" content type"; |
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163 |
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164 std::string content; |
| 2140 | 165 SystemToolbox::ReadFile(content, GetPath(uuid).string()); |
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166 |
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167 return StringMemoryBuffer::CreateFromSwap(content); |
| 0 | 168 } |
| 169 | |
| 170 | |
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171 IMemoryBuffer* FilesystemStorage::ReadRange(const std::string& uuid, |
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172 FileContentType type, |
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173 uint64_t start /* inclusive */, |
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174 uint64_t end /* exclusive */) |
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175 { |
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176 LOG(INFO) << "Reading attachment \"" << uuid << "\" of \"" << GetDescriptionInternal(type) |
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177 << "\" content type (range from " << start << " to " << end << ")"; |
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178 |
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179 std::string content; |
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180 SystemToolbox::ReadFileRange( |
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181 content, GetPath(uuid).string(), start, end, true /* throw if overflow */); |
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182 |
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183 return StringMemoryBuffer::CreateFromSwap(content); |
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184 } |
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185 |
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186 |
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187 bool FilesystemStorage::HasReadRange() const |
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188 { |
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189 return true; |
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190 } |
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191 |
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192 |
| 1123 | 193 uintmax_t FilesystemStorage::GetSize(const std::string& uuid) const |
| 0 | 194 { |
| 195 boost::filesystem::path path = GetPath(uuid); | |
| 196 return boost::filesystem::file_size(path); | |
| 197 } | |
| 198 | |
| 199 | |
| 200 | |
| 1123 | 201 void FilesystemStorage::ListAllFiles(std::set<std::string>& result) const |
| 0 | 202 { |
| 203 namespace fs = boost::filesystem; | |
| 204 | |
| 205 result.clear(); | |
| 206 | |
| 207 if (fs::exists(root_) && fs::is_directory(root_)) | |
| 208 { | |
| 209 for (fs::recursive_directory_iterator current(root_), end; current != end ; ++current) | |
| 210 { | |
| 2140 | 211 if (SystemToolbox::IsRegularFile(current->path().string())) |
| 0 | 212 { |
| 213 try | |
| 214 { | |
| 215 fs::path d = current->path(); | |
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216 std::string uuid = ToString(d); |
| 0 | 217 if (Toolbox::IsUuid(uuid)) |
| 218 { | |
| 219 fs::path p0 = d.parent_path().parent_path().parent_path(); | |
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220 std::string p1 = ToString(d.parent_path().parent_path()); |
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221 std::string p2 = ToString(d.parent_path()); |
| 0 | 222 if (p1.length() == 2 && |
| 223 p2.length() == 2 && | |
| 224 p1 == uuid.substr(0, 2) && | |
| 225 p2 == uuid.substr(2, 2) && | |
| 226 p0 == root_) | |
| 227 { | |
| 228 result.insert(uuid); | |
| 229 } | |
| 230 } | |
| 231 } | |
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232 catch (fs::filesystem_error&) |
| 0 | 233 { |
| 234 } | |
| 235 } | |
| 236 } | |
| 237 } | |
| 238 } | |
| 239 | |
| 240 | |
| 1123 | 241 void FilesystemStorage::Clear() |
| 0 | 242 { |
| 243 namespace fs = boost::filesystem; | |
| 244 typedef std::set<std::string> List; | |
| 245 | |
| 246 List result; | |
| 247 ListAllFiles(result); | |
| 248 | |
| 656 | 249 for (List::const_iterator it = result.begin(); it != result.end(); ++it) |
| 0 | 250 { |
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251 Remove(*it, FileContentType_Unknown /*ignored in this class*/); |
| 0 | 252 } |
| 253 } | |
| 254 | |
| 255 | |
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256 void FilesystemStorage::Remove(const std::string& uuid, |
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257 FileContentType type) |
| 0 | 258 { |
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259 LOG(INFO) << "Deleting attachment \"" << uuid << "\" of type " << static_cast<int>(type); |
| 1397 | 260 |
| 0 | 261 namespace fs = boost::filesystem; |
| 262 | |
| 263 fs::path p = GetPath(uuid); | |
| 147 | 264 |
| 265 try | |
| 266 { | |
| 267 fs::remove(p); | |
| 268 } | |
| 148 | 269 catch (...) |
| 147 | 270 { |
| 271 // Ignore the error | |
| 272 } | |
| 0 | 273 |
| 274 // Remove the two parent directories, ignoring the error code if | |
| 275 // these directories are not empty | |
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276 |
| 142 | 277 try |
| 278 { | |
| 147 | 279 #if BOOST_HAS_FILESYSTEM_V3 == 1 |
| 280 boost::system::error_code err; | |
| 281 fs::remove(p.parent_path(), err); | |
| 282 fs::remove(p.parent_path().parent_path(), err); | |
| 283 #else | |
| 284 fs::remove(p.parent_path()); | |
| 285 fs::remove(p.parent_path().parent_path()); | |
| 286 #endif | |
| 142 | 287 } |
| 148 | 288 catch (...) |
| 142 | 289 { |
| 290 // Ignore the error | |
| 291 } | |
| 292 } | |
| 293 | |
| 294 | |
| 1123 | 295 uintmax_t FilesystemStorage::GetCapacity() const |
| 0 | 296 { |
| 297 return boost::filesystem::space(root_).capacity; | |
| 298 } | |
| 299 | |
| 1123 | 300 uintmax_t FilesystemStorage::GetAvailableSpace() const |
| 0 | 301 { |
| 302 return boost::filesystem::space(root_).available; | |
| 303 } | |
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304 |
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305 |
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306 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
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307 FilesystemStorage::FilesystemStorage(std::string root) : |
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308 fsyncOnWrite_(false) |
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309 { |
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310 Setup(root); |
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311 } |
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312 #endif |
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313 |
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314 |
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315 #if ORTHANC_BUILDING_FRAMEWORK_LIBRARY == 1 |
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316 void FilesystemStorage::Read(std::string& content, |
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317 const std::string& uuid, |
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318 FileContentType type) |
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319 { |
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320 std::unique_ptr<IMemoryBuffer> buffer(Read(uuid, type)); |
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321 buffer->MoveToString(content); |
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322 } |
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323 #endif |
| 0 | 324 } |