Mercurial > hg > orthanc
annotate OrthancServer/Sources/Database/SQLiteDatabaseWrapper.cpp @ 4666:3294385a245a
typo
author | Alain Mazy <am@osimis.io> |
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date | Fri, 21 May 2021 11:25:35 +0200 |
parents | f7d5372b59b3 |
children | f0038043fb97 b8fcd331b4b3 |
rev | line source |
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183 | 1 /** |
2 * Orthanc - A Lightweight, RESTful DICOM Store | |
1900 | 3 * Copyright (C) 2012-2016 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * Copyright (C) 2017-2021 Osimis S.A., Belgium |
183 | 6 * |
7 * This program is free software: you can redistribute it and/or | |
8 * modify it under the terms of the GNU General Public License as | |
9 * published by the Free Software Foundation, either version 3 of the | |
10 * License, or (at your option) any later version. | |
11 * | |
12 * In addition, as a special exception, the copyright holders of this | |
13 * program give permission to link the code of its release with the | |
14 * OpenSSL project's "OpenSSL" library (or with modified versions of it | |
15 * that use the same license as the "OpenSSL" library), and distribute | |
16 * the linked executables. You must obey the GNU General Public License | |
17 * in all respects for all of the code used other than "OpenSSL". If you | |
18 * modify file(s) with this exception, you may extend this exception to | |
19 * your version of the file(s), but you are not obligated to do so. If | |
20 * you do not wish to do so, delete this exception statement from your | |
21 * version. If you delete this exception statement from all source files | |
22 * in the program, then also delete it here. | |
23 * | |
24 * This program is distributed in the hope that it will be useful, but | |
25 * WITHOUT ANY WARRANTY; without even the implied warranty of | |
26 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU | |
27 * General Public License for more details. | |
28 * | |
29 * You should have received a copy of the GNU General Public License | |
30 * along with this program. If not, see <http://www.gnu.org/licenses/>. | |
31 **/ | |
32 | |
33 | |
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34 #include "../PrecompiledHeadersServer.h" |
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35 #include "SQLiteDatabaseWrapper.h" |
183 | 36 |
4045 | 37 #include "../../../OrthancFramework/Sources/DicomFormat/DicomArray.h" |
38 #include "../../../OrthancFramework/Sources/Logging.h" | |
39 #include "../../../OrthancFramework/Sources/SQLite/Transaction.h" | |
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40 #include "../Search/ISqlLookupFormatter.h" |
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41 #include "../ServerToolbox.h" |
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42 #include "Compatibility/ICreateInstance.h" |
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43 #include "Compatibility/IGetChildrenMetadata.h" |
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44 #include "Compatibility/ILookupResourceAndParent.h" |
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45 #include "Compatibility/ISetResourcesContent.h" |
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46 #include "VoidDatabaseListener.h" |
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47 |
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48 #include <OrthancServerResources.h> |
183 | 49 |
50 #include <stdio.h> | |
1247 | 51 #include <boost/lexical_cast.hpp> |
183 | 52 |
53 namespace Orthanc | |
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54 { |
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55 class SQLiteDatabaseWrapper::LookupFormatter : public ISqlLookupFormatter |
183 | 56 { |
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57 private: |
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58 std::list<std::string> values_; |
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59 |
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60 public: |
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61 virtual std::string GenerateParameter(const std::string& value) ORTHANC_OVERRIDE |
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62 { |
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63 values_.push_back(value); |
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64 return "?"; |
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65 } |
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66 |
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67 virtual std::string FormatResourceType(ResourceType level) ORTHANC_OVERRIDE |
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68 { |
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69 return boost::lexical_cast<std::string>(level); |
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70 } |
183 | 71 |
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72 virtual std::string FormatWildcardEscape() ORTHANC_OVERRIDE |
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73 { |
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74 return "ESCAPE '\\'"; |
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75 } |
1158 | 76 |
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77 void Bind(SQLite::Statement& statement) const |
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78 { |
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79 size_t pos = 0; |
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80 |
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81 for (std::list<std::string>::const_iterator |
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82 it = values_.begin(); it != values_.end(); ++it, pos++) |
1158 | 83 { |
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84 statement.BindString(pos, *it); |
1158 | 85 } |
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86 } |
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87 }; |
1158 | 88 |
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89 |
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90 class SQLiteDatabaseWrapper::SignalRemainingAncestor : public SQLite::IScalarFunction |
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91 { |
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92 private: |
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93 bool hasRemainingAncestor_; |
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94 std::string remainingPublicId_; |
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95 ResourceType remainingType_; |
660 | 96 |
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97 public: |
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98 SignalRemainingAncestor() : |
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99 hasRemainingAncestor_(false) |
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100 { |
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101 } |
183 | 102 |
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103 void Reset() |
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104 { |
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105 hasRemainingAncestor_ = false; |
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106 } |
183 | 107 |
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108 virtual const char* GetName() const ORTHANC_OVERRIDE |
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109 { |
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110 return "SignalRemainingAncestor"; |
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111 } |
183 | 112 |
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113 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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114 { |
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115 return 2; |
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116 } |
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117 |
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118 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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119 { |
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120 CLOG(TRACE, SQLITE) << "There exists a remaining ancestor with public ID \"" |
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121 << context.GetStringValue(0) << "\" of type " |
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122 << context.GetIntValue(1); |
183 | 123 |
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124 if (!hasRemainingAncestor_ || |
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125 remainingType_ >= context.GetIntValue(1)) |
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126 { |
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127 hasRemainingAncestor_ = true; |
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128 remainingPublicId_ = context.GetStringValue(0); |
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129 remainingType_ = static_cast<ResourceType>(context.GetIntValue(1)); |
183 | 130 } |
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131 } |
183 | 132 |
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133 bool HasRemainingAncestor() const |
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134 { |
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135 return hasRemainingAncestor_; |
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136 } |
183 | 137 |
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138 const std::string& GetRemainingAncestorId() const |
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139 { |
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140 assert(hasRemainingAncestor_); |
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141 return remainingPublicId_; |
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142 } |
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143 |
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144 ResourceType GetRemainingAncestorType() const |
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145 { |
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146 assert(hasRemainingAncestor_); |
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147 return remainingType_; |
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148 } |
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149 }; |
183 | 150 |
151 | |
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152 class SQLiteDatabaseWrapper::TransactionBase : |
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153 public SQLiteDatabaseWrapper::UnitTestsTransaction, |
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154 public Compatibility::ICreateInstance, |
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155 public Compatibility::IGetChildrenMetadata, |
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156 public Compatibility::ILookupResourceAndParent, |
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157 public Compatibility::ISetResourcesContent |
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158 { |
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159 private: |
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160 void AnswerLookup(std::list<std::string>& resourcesId, |
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161 std::list<std::string>& instancesId, |
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162 ResourceType level) |
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163 { |
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164 resourcesId.clear(); |
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165 instancesId.clear(); |
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166 |
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167 std::unique_ptr<SQLite::Statement> statement; |
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168 |
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169 switch (level) |
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170 { |
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171 case ResourceType_Patient: |
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172 { |
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173 statement.reset( |
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174 new SQLite::Statement( |
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175 db_, SQLITE_FROM_HERE, |
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176 "SELECT patients.publicId, instances.publicID FROM Lookup AS patients " |
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177 "INNER JOIN Resources studies ON patients.internalId=studies.parentId " |
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178 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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179 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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180 "GROUP BY patients.publicId")); |
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181 |
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182 break; |
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183 } |
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184 |
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185 case ResourceType_Study: |
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186 { |
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187 statement.reset( |
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188 new SQLite::Statement( |
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189 db_, SQLITE_FROM_HERE, |
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190 "SELECT studies.publicId, instances.publicID FROM Lookup AS studies " |
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191 "INNER JOIN Resources series ON studies.internalId=series.parentId " |
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192 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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193 "GROUP BY studies.publicId")); |
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194 |
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195 break; |
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196 } |
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197 |
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198 case ResourceType_Series: |
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199 { |
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200 statement.reset( |
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201 new SQLite::Statement( |
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202 db_, SQLITE_FROM_HERE, |
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203 "SELECT series.publicId, instances.publicID FROM Lookup AS series " |
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204 "INNER JOIN Resources instances ON series.internalId=instances.parentId " |
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205 "GROUP BY series.publicId")); |
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206 |
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207 break; |
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208 } |
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209 |
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210 case ResourceType_Instance: |
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211 { |
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212 statement.reset( |
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213 new SQLite::Statement( |
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214 db_, SQLITE_FROM_HERE, "SELECT publicId, publicId FROM Lookup")); |
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215 |
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216 break; |
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217 } |
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218 |
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219 default: |
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220 throw OrthancException(ErrorCode_InternalError); |
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221 } |
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222 |
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223 assert(statement.get() != NULL); |
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224 |
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225 while (statement->Step()) |
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226 { |
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227 resourcesId.push_back(statement->ColumnString(0)); |
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228 instancesId.push_back(statement->ColumnString(1)); |
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229 } |
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230 } |
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231 |
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232 |
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233 void ClearTable(const std::string& tableName) |
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234 { |
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235 db_.Execute("DELETE FROM " + tableName); |
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236 } |
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237 |
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238 |
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239 void GetChangesInternal(std::list<ServerIndexChange>& target, |
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240 bool& done, |
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241 SQLite::Statement& s, |
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242 uint32_t maxResults) |
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243 { |
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244 target.clear(); |
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245 |
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246 while (target.size() < maxResults && s.Step()) |
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247 { |
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248 int64_t seq = s.ColumnInt64(0); |
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249 ChangeType changeType = static_cast<ChangeType>(s.ColumnInt(1)); |
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250 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(3)); |
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251 const std::string& date = s.ColumnString(4); |
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252 |
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253 int64_t internalId = s.ColumnInt64(2); |
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254 std::string publicId = GetPublicId(internalId); |
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255 |
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256 target.push_back(ServerIndexChange(seq, changeType, resourceType, publicId, date)); |
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257 } |
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258 |
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259 done = !(target.size() == maxResults && s.Step()); |
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260 } |
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261 |
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262 |
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263 void GetExportedResourcesInternal(std::list<ExportedResource>& target, |
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264 bool& done, |
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265 SQLite::Statement& s, |
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266 uint32_t maxResults) |
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267 { |
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268 target.clear(); |
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269 |
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270 while (target.size() < maxResults && s.Step()) |
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271 { |
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272 int64_t seq = s.ColumnInt64(0); |
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273 ResourceType resourceType = static_cast<ResourceType>(s.ColumnInt(1)); |
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274 std::string publicId = s.ColumnString(2); |
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275 |
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276 ExportedResource resource(seq, |
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277 resourceType, |
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278 publicId, |
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279 s.ColumnString(3), // modality |
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280 s.ColumnString(8), // date |
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281 s.ColumnString(4), // patient ID |
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282 s.ColumnString(5), // study instance UID |
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283 s.ColumnString(6), // series instance UID |
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284 s.ColumnString(7)); // sop instance UID |
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285 |
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286 target.push_back(resource); |
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287 } |
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288 |
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289 done = !(target.size() == maxResults && s.Step()); |
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290 } |
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291 |
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292 |
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293 void GetChildren(std::list<std::string>& childrenPublicIds, |
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294 int64_t id) |
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295 { |
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296 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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297 s.BindInt64(0, id); |
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298 |
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299 childrenPublicIds.clear(); |
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300 while (s.Step()) |
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301 { |
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302 childrenPublicIds.push_back(s.ColumnString(0)); |
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303 } |
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304 } |
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305 |
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306 boost::mutex::scoped_lock lock_; |
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307 IDatabaseListener& listener_; |
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308 SignalRemainingAncestor& signalRemainingAncestor_; |
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309 |
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310 public: |
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311 TransactionBase(boost::mutex& mutex, |
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312 SQLite::Connection& db, |
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313 IDatabaseListener& listener, |
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314 SignalRemainingAncestor& signalRemainingAncestor) : |
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315 UnitTestsTransaction(db), |
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316 lock_(mutex), |
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317 listener_(listener), |
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318 signalRemainingAncestor_(signalRemainingAncestor) |
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319 { |
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320 } |
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321 |
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322 IDatabaseListener& GetListener() const |
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323 { |
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324 return listener_; |
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325 } |
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326 |
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327 |
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328 virtual void AddAttachment(int64_t id, |
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329 const FileInfo& attachment, |
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330 int64_t revision) ORTHANC_OVERRIDE |
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331 { |
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332 // TODO - REVISIONS |
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333 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO AttachedFiles VALUES(?, ?, ?, ?, ?, ?, ?, ?)"); |
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334 s.BindInt64(0, id); |
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335 s.BindInt(1, attachment.GetContentType()); |
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336 s.BindString(2, attachment.GetUuid()); |
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337 s.BindInt64(3, attachment.GetCompressedSize()); |
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338 s.BindInt64(4, attachment.GetUncompressedSize()); |
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339 s.BindInt(5, attachment.GetCompressionType()); |
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340 s.BindString(6, attachment.GetUncompressedMD5()); |
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341 s.BindString(7, attachment.GetCompressedMD5()); |
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342 s.Run(); |
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343 } |
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344 |
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345 |
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346 virtual void ApplyLookupResources(std::list<std::string>& resourcesId, |
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347 std::list<std::string>* instancesId, |
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348 const std::vector<DatabaseConstraint>& lookup, |
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349 ResourceType queryLevel, |
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350 size_t limit) ORTHANC_OVERRIDE |
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351 { |
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352 LookupFormatter formatter; |
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353 |
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354 std::string sql; |
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355 LookupFormatter::Apply(sql, formatter, lookup, queryLevel, limit); |
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356 |
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357 sql = "CREATE TEMPORARY TABLE Lookup AS " + sql; |
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358 |
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359 { |
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360 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DROP TABLE IF EXISTS Lookup"); |
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361 s.Run(); |
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362 } |
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363 |
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364 { |
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365 SQLite::Statement statement(db_, sql); |
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366 formatter.Bind(statement); |
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367 statement.Run(); |
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368 } |
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369 |
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370 if (instancesId != NULL) |
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371 { |
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372 AnswerLookup(resourcesId, *instancesId, queryLevel); |
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373 } |
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374 else |
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375 { |
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376 resourcesId.clear(); |
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377 |
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378 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Lookup"); |
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379 |
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380 while (s.Step()) |
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381 { |
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382 resourcesId.push_back(s.ColumnString(0)); |
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383 } |
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384 } |
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385 } |
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386 |
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387 |
4592 | 388 // From the "ICreateInstance" interface |
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389 virtual void AttachChild(int64_t parent, |
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390 int64_t child) ORTHANC_OVERRIDE |
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391 { |
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392 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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393 s.BindInt64(0, parent); |
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394 s.BindInt64(1, child); |
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395 s.Run(); |
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396 } |
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397 |
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398 |
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399 virtual void ClearChanges() ORTHANC_OVERRIDE |
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400 { |
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401 ClearTable("Changes"); |
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402 } |
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403 |
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404 virtual void ClearExportedResources() ORTHANC_OVERRIDE |
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405 { |
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406 ClearTable("ExportedResources"); |
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407 } |
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408 |
1241 | 409 |
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410 virtual void ClearMainDicomTags(int64_t id) ORTHANC_OVERRIDE |
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411 { |
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412 { |
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413 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM DicomIdentifiers WHERE id=?"); |
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414 s.BindInt64(0, id); |
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415 s.Run(); |
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416 } |
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417 |
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418 { |
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419 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM MainDicomTags WHERE id=?"); |
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420 s.BindInt64(0, id); |
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421 s.Run(); |
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422 } |
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423 } |
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424 |
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425 |
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426 virtual bool CreateInstance(CreateInstanceResult& result, |
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427 int64_t& instanceId, |
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428 const std::string& patient, |
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429 const std::string& study, |
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430 const std::string& series, |
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431 const std::string& instance) ORTHANC_OVERRIDE |
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432 { |
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433 return ICreateInstance::Apply |
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434 (*this, result, instanceId, patient, study, series, instance); |
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435 } |
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436 |
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437 |
4592 | 438 // From the "ICreateInstance" interface |
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439 virtual int64_t CreateResource(const std::string& publicId, |
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440 ResourceType type) ORTHANC_OVERRIDE |
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441 { |
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442 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); |
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443 s.BindInt(0, type); |
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444 s.BindString(1, publicId); |
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445 s.Run(); |
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446 return db_.GetLastInsertRowId(); |
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447 } |
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448 |
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449 |
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450 virtual void DeleteAttachment(int64_t id, |
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451 FileContentType attachment) ORTHANC_OVERRIDE |
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452 { |
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453 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM AttachedFiles WHERE id=? AND fileType=?"); |
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454 s.BindInt64(0, id); |
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455 s.BindInt(1, attachment); |
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456 s.Run(); |
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457 } |
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458 |
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459 |
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460 virtual void DeleteMetadata(int64_t id, |
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461 MetadataType type) ORTHANC_OVERRIDE |
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462 { |
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463 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Metadata WHERE id=? and type=?"); |
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464 s.BindInt64(0, id); |
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465 s.BindInt(1, type); |
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466 s.Run(); |
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467 } |
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468 |
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469 |
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470 virtual void DeleteResource(int64_t id) ORTHANC_OVERRIDE |
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471 { |
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472 signalRemainingAncestor_.Reset(); |
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473 |
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474 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM Resources WHERE internalId=?"); |
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475 s.BindInt64(0, id); |
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476 s.Run(); |
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477 |
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478 if (signalRemainingAncestor_.HasRemainingAncestor()) |
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479 { |
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480 listener_.SignalRemainingAncestor(signalRemainingAncestor_.GetRemainingAncestorType(), |
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481 signalRemainingAncestor_.GetRemainingAncestorId()); |
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482 } |
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483 } |
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484 |
183 | 485 |
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486 virtual void GetAllMetadata(std::map<MetadataType, std::string>& target, |
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487 int64_t id) ORTHANC_OVERRIDE |
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488 { |
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489 target.clear(); |
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490 |
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491 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT type, value FROM Metadata WHERE id=?"); |
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492 s.BindInt64(0, id); |
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493 |
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494 while (s.Step()) |
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495 { |
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496 MetadataType key = static_cast<MetadataType>(s.ColumnInt(0)); |
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497 target[key] = s.ColumnString(1); |
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498 } |
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499 } |
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500 |
183 | 501 |
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502 virtual void GetAllPublicIds(std::list<std::string>& target, |
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503 ResourceType resourceType) ORTHANC_OVERRIDE |
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504 { |
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505 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE resourceType=?"); |
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506 s.BindInt(0, resourceType); |
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507 |
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508 target.clear(); |
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509 while (s.Step()) |
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510 { |
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511 target.push_back(s.ColumnString(0)); |
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512 } |
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513 } |
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514 |
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515 |
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516 virtual void GetAllPublicIds(std::list<std::string>& target, |
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517 ResourceType resourceType, |
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518 size_t since, |
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519 size_t limit) ORTHANC_OVERRIDE |
183 | 520 { |
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521 if (limit == 0) |
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522 { |
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523 target.clear(); |
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524 return; |
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525 } |
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526 |
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527 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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528 "SELECT publicId FROM Resources WHERE " |
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529 "resourceType=? LIMIT ? OFFSET ?"); |
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530 s.BindInt(0, resourceType); |
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531 s.BindInt64(1, limit); |
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532 s.BindInt64(2, since); |
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533 |
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534 target.clear(); |
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535 while (s.Step()) |
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536 { |
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537 target.push_back(s.ColumnString(0)); |
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538 } |
183 | 539 } |
540 | |
541 | |
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542 virtual void GetChanges(std::list<ServerIndexChange>& target /*out*/, |
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543 bool& done /*out*/, |
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544 int64_t since, |
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545 uint32_t maxResults) ORTHANC_OVERRIDE |
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546 { |
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547 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes WHERE seq>? ORDER BY seq LIMIT ?"); |
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548 s.BindInt64(0, since); |
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549 s.BindInt(1, maxResults + 1); |
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550 GetChangesInternal(target, done, s, maxResults); |
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551 } |
183 | 552 |
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553 |
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554 virtual void GetChildrenMetadata(std::list<std::string>& target, |
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555 int64_t resourceId, |
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556 MetadataType metadata) ORTHANC_OVERRIDE |
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557 { |
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558 IGetChildrenMetadata::Apply(*this, target, resourceId, metadata); |
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559 } |
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560 |
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561 |
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562 virtual void GetChildrenInternalId(std::list<int64_t>& target, |
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563 int64_t id) ORTHANC_OVERRIDE |
183 | 564 { |
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565 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.internalId FROM Resources AS a, Resources AS b " |
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566 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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567 s.BindInt64(0, id); |
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568 |
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569 target.clear(); |
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570 |
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571 while (s.Step()) |
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572 { |
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573 target.push_back(s.ColumnInt64(0)); |
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574 } |
183 | 575 } |
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576 |
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577 |
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578 virtual void GetChildrenPublicId(std::list<std::string>& target, |
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579 int64_t id) ORTHANC_OVERRIDE |
183 | 580 { |
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581 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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582 "WHERE a.parentId = b.internalId AND b.internalId = ?"); |
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583 s.BindInt64(0, id); |
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584 |
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585 target.clear(); |
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586 |
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587 while (s.Step()) |
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588 { |
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589 target.push_back(s.ColumnString(0)); |
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590 } |
183 | 591 } |
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592 |
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593 |
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594 virtual void GetExportedResources(std::list<ExportedResource>& target, |
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595 bool& done, |
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596 int64_t since, |
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597 uint32_t maxResults) ORTHANC_OVERRIDE |
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598 { |
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599 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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600 "SELECT * FROM ExportedResources WHERE seq>? ORDER BY seq LIMIT ?"); |
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601 s.BindInt64(0, since); |
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602 s.BindInt(1, maxResults + 1); |
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603 GetExportedResourcesInternal(target, done, s, maxResults); |
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604 } |
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605 |
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606 |
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607 virtual void GetLastChange(std::list<ServerIndexChange>& target /*out*/) ORTHANC_OVERRIDE |
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608 { |
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609 bool done; // Ignored |
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610 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM Changes ORDER BY seq DESC LIMIT 1"); |
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611 GetChangesInternal(target, done, s, 1); |
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612 } |
183 | 613 |
614 | |
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615 int64_t GetLastChangeIndex() ORTHANC_OVERRIDE |
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616 { |
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617 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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618 "SELECT seq FROM sqlite_sequence WHERE name='Changes'"); |
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619 |
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620 if (s.Step()) |
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621 { |
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622 int64_t c = s.ColumnInt(0); |
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623 assert(!s.Step()); |
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624 return c; |
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625 } |
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626 else |
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627 { |
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628 // No change has been recorded so far in the database |
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629 return 0; |
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630 } |
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631 } |
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632 |
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633 |
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634 virtual void GetLastExportedResource(std::list<ExportedResource>& target) ORTHANC_OVERRIDE |
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635 { |
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636 bool done; // Ignored |
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637 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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638 "SELECT * FROM ExportedResources ORDER BY seq DESC LIMIT 1"); |
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639 GetExportedResourcesInternal(target, done, s, 1); |
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640 } |
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641 |
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642 |
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643 virtual void GetMainDicomTags(DicomMap& map, |
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644 int64_t id) ORTHANC_OVERRIDE |
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645 { |
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646 map.Clear(); |
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647 |
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648 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT * FROM MainDicomTags WHERE id=?"); |
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649 s.BindInt64(0, id); |
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650 while (s.Step()) |
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651 { |
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652 map.SetValue(s.ColumnInt(1), |
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653 s.ColumnInt(2), |
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654 s.ColumnString(3), false); |
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655 } |
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656 } |
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657 |
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658 |
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659 virtual std::string GetPublicId(int64_t resourceId) ORTHANC_OVERRIDE |
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660 { |
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661 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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662 "SELECT publicId FROM Resources WHERE internalId=?"); |
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663 s.BindInt64(0, resourceId); |
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664 |
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665 if (s.Step()) |
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666 { |
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667 return s.ColumnString(0); |
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668 } |
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669 else |
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670 { |
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671 throw OrthancException(ErrorCode_UnknownResource); |
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672 } |
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673 } |
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674 |
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675 |
4595
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676 virtual uint64_t GetResourcesCount(ResourceType resourceType) ORTHANC_OVERRIDE |
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677 { |
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678 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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679 "SELECT COUNT(*) FROM Resources WHERE resourceType=?"); |
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680 s.BindInt(0, resourceType); |
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681 |
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682 if (!s.Step()) |
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683 { |
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684 return 0; |
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685 } |
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686 else |
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687 { |
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688 int64_t c = s.ColumnInt(0); |
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689 assert(!s.Step()); |
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690 return c; |
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691 } |
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692 } |
183 | 693 |
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694 |
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695 virtual ResourceType GetResourceType(int64_t resourceId) ORTHANC_OVERRIDE |
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696 { |
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697 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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698 "SELECT resourceType FROM Resources WHERE internalId=?"); |
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699 s.BindInt64(0, resourceId); |
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700 |
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701 if (s.Step()) |
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702 { |
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703 return static_cast<ResourceType>(s.ColumnInt(0)); |
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704 } |
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705 else |
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706 { |
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707 throw OrthancException(ErrorCode_UnknownResource); |
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708 } |
3809
2bf30ef727e3
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|
709 } |
4591
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710 |
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changeset
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711 |
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712 virtual uint64_t GetTotalCompressedSize() ORTHANC_OVERRIDE |
218 | 713 { |
4591
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714 // Old SQL query that was used in Orthanc <= 1.5.0: |
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715 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(compressedSize) FROM AttachedFiles"); |
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716 |
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717 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=0"); |
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718 s.Run(); |
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719 return static_cast<uint64_t>(s.ColumnInt64(0)); |
218 | 720 } |
183 | 721 |
722 | |
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723 virtual uint64_t GetTotalUncompressedSize() ORTHANC_OVERRIDE |
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724 { |
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725 // Old SQL query that was used in Orthanc <= 1.5.0: |
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726 // SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT SUM(uncompressedSize) FROM AttachedFiles"); |
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727 |
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728 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT value FROM GlobalIntegers WHERE key=1"); |
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729 s.Run(); |
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730 return static_cast<uint64_t>(s.ColumnInt64(0)); |
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731 } |
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732 |
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733 |
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734 virtual bool IsDiskSizeAbove(uint64_t threshold) ORTHANC_OVERRIDE |
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735 { |
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736 return GetTotalCompressedSize() > threshold; |
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737 } |
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738 |
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739 |
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740 virtual bool IsExistingResource(int64_t internalId) ORTHANC_OVERRIDE |
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741 { |
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742 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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743 "SELECT * FROM Resources WHERE internalId=?"); |
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744 s.BindInt64(0, internalId); |
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745 return s.Step(); |
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746 } |
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747 |
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748 |
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749 virtual bool IsProtectedPatient(int64_t internalId) ORTHANC_OVERRIDE |
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750 { |
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751 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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752 "SELECT * FROM PatientRecyclingOrder WHERE patientId = ?"); |
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753 s.BindInt64(0, internalId); |
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754 return !s.Step(); |
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755 } |
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|
756 |
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changeset
|
757 |
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758 virtual void ListAvailableAttachments(std::set<FileContentType>& target, |
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759 int64_t id) ORTHANC_OVERRIDE |
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760 { |
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761 target.clear(); |
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762 |
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763 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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764 "SELECT fileType FROM AttachedFiles WHERE id=?"); |
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765 s.BindInt64(0, id); |
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766 |
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767 while (s.Step()) |
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768 { |
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769 target.insert(static_cast<FileContentType>(s.ColumnInt(0))); |
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770 } |
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771 } |
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|
772 |
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|
773 |
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774 virtual void LogChange(int64_t internalId, |
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775 const ServerIndexChange& change) ORTHANC_OVERRIDE |
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776 { |
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|
777 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Changes VALUES(NULL, ?, ?, ?, ?)"); |
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778 s.BindInt(0, change.GetChangeType()); |
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779 s.BindInt64(1, internalId); |
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|
780 s.BindInt(2, change.GetResourceType()); |
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781 s.BindString(3, change.GetDate()); |
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782 s.Run(); |
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783 } |
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784 |
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|
785 |
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786 virtual void LogExportedResource(const ExportedResource& resource) ORTHANC_OVERRIDE |
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787 { |
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788 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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789 "INSERT INTO ExportedResources VALUES(NULL, ?, ?, ?, ?, ?, ?, ?, ?)"); |
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790 |
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791 s.BindInt(0, resource.GetResourceType()); |
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792 s.BindString(1, resource.GetPublicId()); |
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793 s.BindString(2, resource.GetModality()); |
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794 s.BindString(3, resource.GetPatientId()); |
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795 s.BindString(4, resource.GetStudyInstanceUid()); |
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796 s.BindString(5, resource.GetSeriesInstanceUid()); |
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|
797 s.BindString(6, resource.GetSopInstanceUid()); |
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798 s.BindString(7, resource.GetDate()); |
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799 s.Run(); |
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800 } |
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801 |
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|
802 |
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|
803 virtual bool LookupAttachment(FileInfo& attachment, |
4627
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804 int64_t& revision, |
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805 int64_t id, |
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806 FileContentType contentType) ORTHANC_OVERRIDE |
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807 { |
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808 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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809 "SELECT uuid, uncompressedSize, compressionType, compressedSize, " |
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|
810 "uncompressedMD5, compressedMD5 FROM AttachedFiles WHERE id=? AND fileType=?"); |
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811 s.BindInt64(0, id); |
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812 s.BindInt(1, contentType); |
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changeset
|
813 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
814 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
815 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
816 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
817 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
818 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
819 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
820 attachment = FileInfo(s.ColumnString(0), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
821 contentType, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
822 s.ColumnInt64(1), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
823 s.ColumnString(4), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
824 static_cast<CompressionType>(s.ColumnInt(2)), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
825 s.ColumnInt64(3), |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
826 s.ColumnString(5)); |
4627
f7d5372b59b3
handling revisions of attachments
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4623
diff
changeset
|
827 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
828 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
829 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
830 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
831 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
832 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
833 virtual bool LookupGlobalProperty(std::string& target, |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
834 GlobalProperty property, |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
835 bool shared) ORTHANC_OVERRIDE |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
836 { |
4607
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
837 // The "shared" info is not used by the SQLite database, as it |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
838 // can only be used by one Orthanc server. |
f75c63aa9de0
differentiating between shared and private global properties
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4595
diff
changeset
|
839 |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
840 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
841 "SELECT value FROM GlobalProperties WHERE property=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
842 s.BindInt(0, property); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
843 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
844 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
845 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
846 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
847 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
848 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
849 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
850 target = s.ColumnString(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
851 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
852 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
853 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
854 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
855 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
856 virtual bool LookupMetadata(std::string& target, |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
857 int64_t& revision, |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
858 int64_t id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
859 MetadataType type) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
860 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
861 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
862 "SELECT value FROM Metadata WHERE id=? AND type=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
863 s.BindInt64(0, id); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
864 s.BindInt(1, type); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
865 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
866 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
867 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
868 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
869 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
870 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
871 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
872 target = s.ColumnString(0); |
4623
95ffe3b6ef7c
handling of revisions for metadata
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4607
diff
changeset
|
873 revision = 0; // TODO - REVISIONS |
4591
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
874 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
875 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
876 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
877 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
878 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
879 virtual bool LookupParent(int64_t& parentId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
880 int64_t resourceId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
881 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
882 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
883 "SELECT parentId FROM Resources WHERE internalId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
884 s.BindInt64(0, resourceId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
885 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
886 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
887 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
888 throw OrthancException(ErrorCode_UnknownResource); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
889 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
890 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
891 if (s.ColumnIsNull(0)) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
892 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
893 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
894 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
895 else |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
896 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
897 parentId = s.ColumnInt(0); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
898 return true; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
899 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
900 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
901 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
902 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
903 virtual bool LookupResourceAndParent(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
904 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
905 std::string& parentPublicId, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
906 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
907 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
908 return ILookupResourceAndParent::Apply(*this, id, type, parentPublicId, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
909 } |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
910 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
911 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
912 virtual bool LookupResource(int64_t& id, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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parents:
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diff
changeset
|
913 ResourceType& type, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
914 const std::string& publicId) ORTHANC_OVERRIDE |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
915 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
916 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
917 "SELECT internalId, resourceType FROM Resources WHERE publicId=?"); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
918 s.BindString(0, publicId); |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
919 |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
920 if (!s.Step()) |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
921 { |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
4589
diff
changeset
|
922 return false; |
ff8170d17d90
moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
923 } |
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|
924 else |
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|
925 { |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
926 id = s.ColumnInt(0); |
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|
927 type = static_cast<ResourceType>(s.ColumnInt(1)); |
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|
928 |
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
929 // Check whether there is a single resource with this public id |
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|
930 assert(!s.Step()); |
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|
931 |
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|
932 return true; |
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|
933 } |
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|
934 } |
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|
935 |
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936 |
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937 virtual bool SelectPatientToRecycle(int64_t& internalId) ORTHANC_OVERRIDE |
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938 { |
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939 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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940 "SELECT patientId FROM PatientRecyclingOrder ORDER BY seq ASC LIMIT 1"); |
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|
941 |
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942 if (!s.Step()) |
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|
943 { |
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944 // No patient remaining or all the patients are protected |
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|
945 return false; |
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|
946 } |
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|
947 else |
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|
948 { |
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|
949 internalId = s.ColumnInt(0); |
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|
950 return true; |
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|
951 } |
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|
952 } |
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diff
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|
953 |
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diff
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|
954 |
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955 virtual bool SelectPatientToRecycle(int64_t& internalId, |
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956 int64_t patientIdToAvoid) ORTHANC_OVERRIDE |
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957 { |
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958 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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959 "SELECT patientId FROM PatientRecyclingOrder " |
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960 "WHERE patientId != ? ORDER BY seq ASC LIMIT 1"); |
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961 s.BindInt64(0, patientIdToAvoid); |
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962 |
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963 if (!s.Step()) |
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964 { |
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965 // No patient remaining or all the patients are protected |
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|
966 return false; |
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|
967 } |
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968 else |
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969 { |
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970 internalId = s.ColumnInt(0); |
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|
971 return true; |
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|
972 } |
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973 } |
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|
974 |
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|
975 |
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|
976 virtual void SetGlobalProperty(GlobalProperty property, |
4607
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|
977 bool shared, |
4591
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978 const std::string& value) ORTHANC_OVERRIDE |
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|
979 { |
4607
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|
980 // The "shared" info is not used by the SQLite database, as it |
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|
981 // can only be used by one Orthanc server. |
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|
982 |
4591
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|
983 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO GlobalProperties VALUES(?, ?)"); |
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|
984 s.BindInt(0, property); |
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|
985 s.BindString(1, value); |
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|
986 s.Run(); |
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|
987 } |
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|
988 |
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|
989 |
4592 | 990 // From the "ISetResourcesContent" interface |
4591
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991 virtual void SetIdentifierTag(int64_t id, |
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992 const DicomTag& tag, |
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993 const std::string& value) ORTHANC_OVERRIDE |
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|
994 { |
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|
995 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
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996 s.BindInt64(0, id); |
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|
997 s.BindInt(1, tag.GetGroup()); |
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|
998 s.BindInt(2, tag.GetElement()); |
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999 s.BindString(3, value); |
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|
1000 s.Run(); |
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1001 } |
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|
1002 |
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|
1003 |
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1004 virtual void SetProtectedPatient(int64_t internalId, |
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1005 bool isProtected) ORTHANC_OVERRIDE |
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1006 { |
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1007 if (isProtected) |
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|
1008 { |
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1009 SQLite::Statement s(db_, SQLITE_FROM_HERE, "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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1010 s.BindInt64(0, internalId); |
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1011 s.Run(); |
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1012 } |
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1013 else if (IsProtectedPatient(internalId)) |
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1014 { |
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|
1015 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
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1016 s.BindInt64(0, internalId); |
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1017 s.Run(); |
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1018 } |
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1019 else |
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1020 { |
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|
1021 // Nothing to do: The patient is already unprotected |
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1022 } |
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1023 } |
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|
1024 |
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|
1025 |
4592 | 1026 // From the "ISetResourcesContent" interface |
4591
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1027 virtual void SetMainDicomTag(int64_t id, |
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1028 const DicomTag& tag, |
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1029 const std::string& value) ORTHANC_OVERRIDE |
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1030 { |
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|
1031 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); |
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1032 s.BindInt64(0, id); |
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1033 s.BindInt(1, tag.GetGroup()); |
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1034 s.BindInt(2, tag.GetElement()); |
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1035 s.BindString(3, value); |
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1036 s.Run(); |
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1037 } |
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1038 |
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1039 |
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1040 virtual void SetMetadata(int64_t id, |
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1041 MetadataType type, |
4623
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1042 const std::string& value, |
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1043 int64_t revision) ORTHANC_OVERRIDE |
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1044 { |
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1045 // TODO - REVISIONS |
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1046 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT OR REPLACE INTO Metadata VALUES(?, ?, ?)"); |
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1047 s.BindInt64(0, id); |
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1048 s.BindInt(1, type); |
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1049 s.BindString(2, value); |
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1050 s.Run(); |
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1051 } |
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1052 |
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1053 |
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1054 virtual void SetResourcesContent(const Orthanc::ResourcesContent& content) ORTHANC_OVERRIDE |
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1055 { |
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1056 ISetResourcesContent::Apply(*this, content); |
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1057 } |
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1058 |
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1059 |
4592 | 1060 // From the "ICreateInstance" interface |
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1061 virtual void TagMostRecentPatient(int64_t patient) ORTHANC_OVERRIDE |
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1062 { |
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1063 { |
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1064 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1065 "DELETE FROM PatientRecyclingOrder WHERE patientId=?"); |
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1066 s.BindInt64(0, patient); |
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1067 s.Run(); |
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1068 |
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1069 assert(db_.GetLastChangeCount() == 0 || |
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1070 db_.GetLastChangeCount() == 1); |
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1071 |
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1072 if (db_.GetLastChangeCount() == 0) |
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1073 { |
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1074 // The patient was protected, there was nothing to delete from the recycling order |
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1075 return; |
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1076 } |
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1077 } |
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1078 |
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1079 { |
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1080 SQLite::Statement s(db_, SQLITE_FROM_HERE, |
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1081 "INSERT INTO PatientRecyclingOrder VALUES(NULL, ?)"); |
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1082 s.BindInt64(0, patient); |
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1083 s.Run(); |
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1084 } |
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1085 } |
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1086 }; |
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1087 |
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1088 |
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1089 class SQLiteDatabaseWrapper::SignalFileDeleted : public SQLite::IScalarFunction |
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1090 { |
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1091 private: |
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1092 SQLiteDatabaseWrapper& sqlite_; |
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1093 |
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1094 public: |
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1095 SignalFileDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1096 sqlite_(sqlite) |
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1097 { |
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1098 } |
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1099 |
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1100 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1101 { |
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1102 return "SignalFileDeleted"; |
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1103 } |
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1104 |
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1105 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1106 { |
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1107 return 7; |
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1108 } |
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1109 |
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1110 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1111 { |
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1112 if (sqlite_.activeTransaction_ != NULL) |
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1113 { |
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1114 std::string uncompressedMD5, compressedMD5; |
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1115 |
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1116 if (!context.IsNullValue(5)) |
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1117 { |
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1118 uncompressedMD5 = context.GetStringValue(5); |
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1119 } |
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1120 |
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1121 if (!context.IsNullValue(6)) |
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1122 { |
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1123 compressedMD5 = context.GetStringValue(6); |
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1124 } |
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1125 |
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1126 FileInfo info(context.GetStringValue(0), |
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1127 static_cast<FileContentType>(context.GetIntValue(1)), |
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1128 static_cast<uint64_t>(context.GetInt64Value(2)), |
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1129 uncompressedMD5, |
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1130 static_cast<CompressionType>(context.GetIntValue(3)), |
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1131 static_cast<uint64_t>(context.GetInt64Value(4)), |
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1132 compressedMD5); |
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1133 |
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1134 sqlite_.activeTransaction_->GetListener().SignalAttachmentDeleted(info); |
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1135 } |
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1136 } |
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1137 }; |
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1138 |
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1139 |
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1140 class SQLiteDatabaseWrapper::SignalResourceDeleted : public SQLite::IScalarFunction |
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1141 { |
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1142 private: |
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1143 SQLiteDatabaseWrapper& sqlite_; |
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1144 |
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1145 public: |
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1146 SignalResourceDeleted(SQLiteDatabaseWrapper& sqlite) : |
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1147 sqlite_(sqlite) |
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1148 { |
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1149 } |
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1150 |
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1151 virtual const char* GetName() const ORTHANC_OVERRIDE |
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1152 { |
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1153 return "SignalResourceDeleted"; |
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1154 } |
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1155 |
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1156 virtual unsigned int GetCardinality() const ORTHANC_OVERRIDE |
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1157 { |
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1158 return 2; |
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1159 } |
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1160 |
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1161 virtual void Compute(SQLite::FunctionContext& context) ORTHANC_OVERRIDE |
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1162 { |
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1163 if (sqlite_.activeTransaction_ != NULL) |
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1164 { |
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1165 sqlite_.activeTransaction_->GetListener(). |
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1166 SignalResourceDeleted(static_cast<ResourceType>(context.GetIntValue(1)), |
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1167 context.GetStringValue(0)); |
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1168 } |
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1169 } |
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1170 }; |
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1171 |
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1172 |
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1173 class SQLiteDatabaseWrapper::ReadWriteTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1174 { |
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1175 private: |
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1176 SQLiteDatabaseWrapper& that_; |
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1177 std::unique_ptr<SQLite::Transaction> transaction_; |
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1178 int64_t initialDiskSize_; |
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1179 |
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1180 public: |
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1181 ReadWriteTransaction(SQLiteDatabaseWrapper& that, |
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1182 IDatabaseListener& listener) : |
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1183 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1184 that_(that), |
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1185 transaction_(new SQLite::Transaction(that_.db_)) |
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1186 { |
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1187 if (that_.activeTransaction_ != NULL) |
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1188 { |
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1189 throw OrthancException(ErrorCode_InternalError); |
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1190 } |
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1191 |
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1192 that_.activeTransaction_ = this; |
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1193 |
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1194 #if defined(NDEBUG) |
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1195 // Release mode |
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1196 initialDiskSize_ = 0; |
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1197 #else |
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1198 // Debug mode |
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1199 initialDiskSize_ = static_cast<int64_t>(GetTotalCompressedSize()); |
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1200 #endif |
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1201 } |
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1202 |
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1203 virtual ~ReadWriteTransaction() |
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1204 { |
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1205 assert(that_.activeTransaction_ != NULL); |
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1206 that_.activeTransaction_ = NULL; |
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1207 } |
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1208 |
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1209 void Begin() |
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1210 { |
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1211 transaction_->Begin(); |
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1212 } |
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1213 |
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1214 virtual void Rollback() ORTHANC_OVERRIDE |
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1215 { |
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1216 transaction_->Rollback(); |
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1217 } |
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1218 |
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1219 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1220 { |
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1221 transaction_->Commit(); |
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1222 |
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1223 assert(initialDiskSize_ + fileSizeDelta >= 0 && |
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1224 initialDiskSize_ + fileSizeDelta == static_cast<int64_t>(GetTotalCompressedSize())); |
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1225 } |
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1226 }; |
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1227 |
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1228 |
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1229 class SQLiteDatabaseWrapper::ReadOnlyTransaction : public SQLiteDatabaseWrapper::TransactionBase |
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1230 { |
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1231 private: |
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1232 SQLiteDatabaseWrapper& that_; |
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1233 |
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1234 public: |
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1235 ReadOnlyTransaction(SQLiteDatabaseWrapper& that, |
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1236 IDatabaseListener& listener) : |
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1237 TransactionBase(that.mutex_, that.db_, listener, *that.signalRemainingAncestor_), |
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1238 that_(that) |
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1239 { |
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1240 if (that_.activeTransaction_ != NULL) |
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1241 { |
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1242 throw OrthancException(ErrorCode_InternalError); |
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1243 } |
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1244 |
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1245 that_.activeTransaction_ = this; |
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1246 } |
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1247 |
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1248 virtual ~ReadOnlyTransaction() |
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1249 { |
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1250 assert(that_.activeTransaction_ != NULL); |
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1251 that_.activeTransaction_ = NULL; |
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1252 } |
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1253 |
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1254 virtual void Rollback() ORTHANC_OVERRIDE |
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1255 { |
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1256 } |
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1257 |
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1258 virtual void Commit(int64_t fileSizeDelta /* only used in debug */) ORTHANC_OVERRIDE |
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1259 { |
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1260 if (fileSizeDelta != 0) |
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1261 { |
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1262 throw OrthancException(ErrorCode_InternalError); |
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1263 } |
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1264 } |
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1265 }; |
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1266 |
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1267 |
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1268 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper(const std::string& path) : |
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1269 activeTransaction_(NULL), |
1847 | 1270 signalRemainingAncestor_(NULL), |
1271 version_(0) | |
183 | 1272 { |
1273 db_.Open(path); | |
1274 } | |
1275 | |
2773
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1276 |
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1277 SQLiteDatabaseWrapper::SQLiteDatabaseWrapper() : |
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1278 activeTransaction_(NULL), |
1847 | 1279 signalRemainingAncestor_(NULL), |
1280 version_(0) | |
183 | 1281 { |
1282 db_.OpenInMemory(); | |
1283 } | |
1284 | |
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1285 SQLiteDatabaseWrapper::~SQLiteDatabaseWrapper() |
3116 | 1286 { |
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1287 if (activeTransaction_ != NULL) |
3116 | 1288 { |
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1289 LOG(ERROR) << "A SQLite transaction is still active in the SQLiteDatabaseWrapper destructor: Expect a crash"; |
3116 | 1290 } |
1291 } | |
1292 | |
1293 | |
3017
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1294 void SQLiteDatabaseWrapper::Open() |
183 | 1295 { |
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1296 { |
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1297 boost::mutex::scoped_lock lock(mutex_); |
1717
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1298 |
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1299 if (signalRemainingAncestor_ != NULL) |
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1300 { |
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1301 throw OrthancException(ErrorCode_BadSequenceOfCalls); // Cannot open twice |
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1302 } |
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1303 |
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1304 signalRemainingAncestor_ = dynamic_cast<SignalRemainingAncestor*>(db_.Register(new SignalRemainingAncestor)); |
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1305 db_.Register(new SignalFileDeleted(*this)); |
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1306 db_.Register(new SignalResourceDeleted(*this)); |
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1307 |
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1308 db_.Execute("PRAGMA ENCODING=\"UTF-8\";"); |
374 | 1309 |
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1310 // Performance tuning of SQLite with PRAGMAs |
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1311 // http://www.sqlite.org/pragma.html |
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1312 db_.Execute("PRAGMA SYNCHRONOUS=NORMAL;"); |
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1313 db_.Execute("PRAGMA JOURNAL_MODE=WAL;"); |
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1314 db_.Execute("PRAGMA LOCKING_MODE=EXCLUSIVE;"); |
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1315 db_.Execute("PRAGMA WAL_AUTOCHECKPOINT=1000;"); |
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1316 //db_.Execute("PRAGMA TEMP_STORE=memory"); |
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1317 |
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1318 // Make "LIKE" case-sensitive in SQLite |
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1319 db_.Execute("PRAGMA case_sensitive_like = true;"); |
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1320 } |
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1321 |
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1322 VoidDatabaseListener listener; |
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1323 |
183 | 1324 { |
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1325 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadOnly, listener)); |
1239 | 1326 |
3116 | 1327 if (!db_.DoesTableExist("GlobalProperties")) |
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1328 { |
3116 | 1329 LOG(INFO) << "Creating the database"; |
3018
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1330 std::string query; |
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|
1331 ServerResources::GetFileResource(query, ServerResources::PREPARE_DATABASE); |
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1332 db_.Execute(query); |
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1333 } |
3116 | 1334 |
1335 // Check the version of the database | |
1336 std::string tmp; | |
4607
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1337 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_DatabaseSchemaVersion, true /* unused in SQLite */)) |
3116 | 1338 { |
1339 tmp = "Unknown"; | |
1340 } | |
1341 | |
1342 bool ok = false; | |
1343 try | |
1344 { | |
1345 LOG(INFO) << "Version of the Orthanc database: " << tmp; | |
1346 version_ = boost::lexical_cast<unsigned int>(tmp); | |
1347 ok = true; | |
1348 } | |
1349 catch (boost::bad_lexical_cast&) | |
1350 { | |
1351 } | |
1352 | |
1353 if (!ok) | |
1354 { | |
1355 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion, | |
1356 "Incompatible version of the Orthanc database: " + tmp); | |
1357 } | |
1358 | |
1359 // New in Orthanc 1.5.1 | |
1360 if (version_ == 6) | |
1361 { | |
4607
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1362 if (!transaction->LookupGlobalProperty(tmp, GlobalProperty_GetTotalSizeIsFast, true /* unused in SQLite */) || |
3116 | 1363 tmp != "1") |
1364 { | |
1365 LOG(INFO) << "Installing the SQLite triggers to track the size of the attachments"; | |
1366 std::string query; | |
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1367 ServerResources::GetFileResource(query, ServerResources::INSTALL_TRACK_ATTACHMENTS_SIZE); |
3116 | 1368 db_.Execute(query); |
1369 } | |
1370 } | |
1371 | |
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1372 transaction->Commit(0); |
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1373 } |
1247 | 1374 } |
1375 | |
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1376 |
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1377 void SQLiteDatabaseWrapper::Close() |
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1378 { |
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1379 boost::mutex::scoped_lock lock(mutex_); |
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1380 db_.Close(); |
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1381 } |
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1382 |
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1383 |
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1384 static void ExecuteUpgradeScript(SQLite::Connection& db, |
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1385 ServerResources::FileResourceId script) |
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1386 { |
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1387 std::string upgrade; |
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1388 ServerResources::GetFileResource(upgrade, script); |
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1389 db.BeginTransaction(); |
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1390 db.Execute(upgrade); |
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1391 db.CommitTransaction(); |
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1392 } |
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1393 |
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1394 |
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1395 void SQLiteDatabaseWrapper::Upgrade(unsigned int targetVersion, |
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1396 IStorageArea& storageArea) |
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1397 { |
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1398 boost::mutex::scoped_lock lock(mutex_); |
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1399 |
1664
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1400 if (targetVersion != 6) |
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1401 { |
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1402 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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1403 } |
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1404 |
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1405 // This version of Orthanc is only compatible with versions 3, 4, |
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diff
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|
1406 // 5 and 6 of the DB schema |
1615
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|
1407 if (version_ != 3 && |
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|
1408 version_ != 4 && |
1664
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|
1409 version_ != 5 && |
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diff
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|
1410 version_ != 6) |
1615
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1411 { |
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|
1412 throw OrthancException(ErrorCode_IncompatibleDatabaseVersion); |
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|
1413 } |
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1414 |
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1415 if (version_ == 3) |
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1416 { |
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diff
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|
1417 LOG(WARNING) << "Upgrading database version from 3 to 4"; |
4031
e3b3af80732d
ServerResources, and moving EmbeddedResourceHttpHandler from Core to OrthancServer
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1418 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_3_TO_4); |
1615
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Primitives to upgrade the database version in plugins
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1419 version_ = 4; |
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|
1420 } |
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Primitives to upgrade the database version in plugins
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1421 |
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Primitives to upgrade the database version in plugins
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1422 if (version_ == 4) |
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1423 { |
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1424 LOG(WARNING) << "Upgrading database version from 4 to 5"; |
4031
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|
1425 ExecuteUpgradeScript(db_, ServerResources::UPGRADE_DATABASE_4_TO_5); |
1615
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1426 version_ = 5; |
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|
1427 } |
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1428 |
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1429 if (version_ == 5) |
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1430 { |
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|
1431 LOG(WARNING) << "Upgrading database version from 5 to 6"; |
1668
de1413733c97
reconstructing main dicom tags
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diff
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1432 // No change in the DB schema, the step from version 5 to 6 only |
1710 | 1433 // consists in reconstructing the main DICOM tags information |
1434 // (as more tags got included). | |
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1435 |
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|
1436 VoidDatabaseListener listener; |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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1437 |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1438 { |
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1439 std::unique_ptr<ITransaction> transaction(StartTransaction(TransactionType_ReadWrite, listener)); |
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|
1440 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Patient); |
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1441 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Study); |
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1442 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Series); |
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1443 ServerToolbox::ReconstructMainDicomTags(*transaction, storageArea, ResourceType_Instance); |
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|
1444 db_.Execute("UPDATE GlobalProperties SET value=\"6\" WHERE property=" + |
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|
1445 boost::lexical_cast<std::string>(GlobalProperty_DatabaseSchemaVersion) + ";"); |
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moving all accesses to databases from IDatabaseWrapper to ITransaction
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|
1446 transaction->Commit(0); |
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1447 } |
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1448 |
1664
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|
1449 version_ = 6; |
1729 | 1450 } |
1615
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1451 } |
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1452 |
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1453 |
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|
1454 IDatabaseWrapper::ITransaction* SQLiteDatabaseWrapper::StartTransaction(TransactionType type, |
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|
1455 IDatabaseListener& listener) |
4570
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|
1456 { |
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|
1457 switch (type) |
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|
1458 { |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1459 case TransactionType_ReadOnly: |
4589
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attaching the listener to transactions in IDatabaseWrapper
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diff
changeset
|
1460 return new ReadOnlyTransaction(*this, listener); // This is a no-op transaction in SQLite (thanks to mutex) |
4570
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|
1461 |
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|
1462 case TransactionType_ReadWrite: |
648defffc8cc
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|
1463 { |
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|
1464 std::unique_ptr<ReadWriteTransaction> transaction; |
4589
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|
1465 transaction.reset(new ReadWriteTransaction(*this, listener)); |
4570
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|
1466 transaction->Begin(); |
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|
1467 return transaction.release(); |
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|
1468 } |
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|
1469 |
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|
1470 default: |
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|
1471 throw OrthancException(ErrorCode_InternalError); |
648defffc8cc
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Sebastien Jodogne <s.jodogne@gmail.com>
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|
1472 } |
3019
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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3018
diff
changeset
|
1473 } |
8336204d95dc
refactoring computation of disk size for recycling
Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1474 |
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diff
changeset
|
1475 |
4594
d494b4f1103e
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
changeset
|
1476 void SQLiteDatabaseWrapper::FlushToDisk() |
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|
1477 { |
d494b4f1103e
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diff
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|
1478 boost::mutex::scoped_lock lock(mutex_); |
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Sebastien Jodogne <s.jodogne@gmail.com>
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diff
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|
1479 db_.FlushToDisk(); |
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|
1480 } |
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|
1481 |
d494b4f1103e
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changeset
|
1482 |
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changeset
|
1483 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::CreateResource(const std::string& publicId, |
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|
1484 ResourceType type) |
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1485 { |
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|
1486 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO Resources VALUES(NULL, ?, ?, NULL)"); |
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1487 s.BindInt(0, type); |
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|
1488 s.BindString(1, publicId); |
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1489 s.Run(); |
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1490 return db_.GetLastInsertRowId(); |
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1491 } |
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1492 |
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1493 |
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|
1494 void SQLiteDatabaseWrapper::UnitTestsTransaction::AttachChild(int64_t parent, |
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|
1495 int64_t child) |
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1496 { |
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|
1497 SQLite::Statement s(db_, SQLITE_FROM_HERE, "UPDATE Resources SET parentId = ? WHERE internalId = ?"); |
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|
1498 s.BindInt64(0, parent); |
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|
1499 s.BindInt64(1, child); |
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1500 s.Run(); |
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|
1501 } |
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|
1502 |
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1503 |
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|
1504 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetIdentifierTag(int64_t id, |
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|
1505 const DicomTag& tag, |
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|
1506 const std::string& value) |
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1507 { |
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|
1508 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO DicomIdentifiers VALUES(?, ?, ?, ?)"); |
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|
1509 s.BindInt64(0, id); |
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changeset
|
1510 s.BindInt(1, tag.GetGroup()); |
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|
1511 s.BindInt(2, tag.GetElement()); |
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|
1512 s.BindString(3, value); |
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|
1513 s.Run(); |
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|
1514 } |
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|
1515 |
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|
1516 |
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1517 void SQLiteDatabaseWrapper::UnitTestsTransaction::SetMainDicomTag(int64_t id, |
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1518 const DicomTag& tag, |
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1519 const std::string& value) |
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1520 { |
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1521 SQLite::Statement s(db_, SQLITE_FROM_HERE, "INSERT INTO MainDicomTags VALUES(?, ?, ?, ?)"); |
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1522 s.BindInt64(0, id); |
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1523 s.BindInt(1, tag.GetGroup()); |
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1524 s.BindInt(2, tag.GetElement()); |
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1525 s.BindString(3, value); |
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1526 s.Run(); |
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1527 } |
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1528 |
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1529 |
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1530 int64_t SQLiteDatabaseWrapper::UnitTestsTransaction::GetTableRecordCount(const std::string& table) |
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1531 { |
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1532 /** |
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1533 * "Generally one cannot use SQL parameters/placeholders for |
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1534 * database identifiers (tables, columns, views, schemas, etc.) or |
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1535 * database functions (e.g., CURRENT_DATE), but instead only for |
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1536 * binding literal values." => To avoid any SQL injection, we |
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1537 * check that the "table" parameter has only alphabetic |
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1538 * characters. |
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1539 * https://stackoverflow.com/a/1274764/881731 |
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1540 **/ |
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1541 for (size_t i = 0; i < table.size(); i++) |
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1542 { |
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1543 if (!isalpha(table[i])) |
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1544 { |
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1545 throw OrthancException(ErrorCode_ParameterOutOfRange); |
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1546 } |
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1547 } |
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1548 |
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1549 // Don't use "SQLITE_FROM_HERE", otherwise "table" would be cached |
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1550 SQLite::Statement s(db_, "SELECT COUNT(*) FROM " + table); |
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1551 |
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1552 if (s.Step()) |
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1553 { |
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1554 int64_t c = s.ColumnInt(0); |
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1555 assert(!s.Step()); |
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1556 return c; |
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1557 } |
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1558 else |
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1559 { |
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1560 throw OrthancException(ErrorCode_InternalError); |
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1561 } |
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1562 } |
3121 | 1563 |
1564 | |
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1565 bool SQLiteDatabaseWrapper::UnitTestsTransaction::GetParentPublicId(std::string& target, |
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1566 int64_t id) |
3121 | 1567 { |
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1568 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT a.publicId FROM Resources AS a, Resources AS b " |
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1569 "WHERE a.internalId = b.parentId AND b.internalId = ?"); |
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1570 s.BindInt64(0, id); |
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1571 |
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1572 if (s.Step()) |
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1573 { |
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1574 target = s.ColumnString(0); |
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1575 return true; |
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1576 } |
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1577 else |
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1578 { |
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1579 return false; |
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1580 } |
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1581 } |
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1582 |
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1583 |
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1584 void SQLiteDatabaseWrapper::UnitTestsTransaction::GetChildren(std::list<std::string>& childrenPublicIds, |
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1585 int64_t id) |
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1586 { |
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1587 SQLite::Statement s(db_, SQLITE_FROM_HERE, "SELECT publicId FROM Resources WHERE parentId=?"); |
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1588 s.BindInt64(0, id); |
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1589 |
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1590 childrenPublicIds.clear(); |
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1591 while (s.Step()) |
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1592 { |
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1593 childrenPublicIds.push_back(s.ColumnString(0)); |
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1594 } |
3121 | 1595 } |
183 | 1596 } |