Mercurial > hg > orthanc
annotate OrthancServer/DicomDirWriter.cpp @ 1380:31b884468b05
fix
author | Sebastien Jodogne <s.jodogne@gmail.com> |
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date | Fri, 29 May 2015 13:23:54 +0200 |
parents | 6e7e5ed91c2d |
children | f967bdf8534e |
rev | line source |
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1 /** |
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2 * Orthanc - A Lightweight, RESTful DICOM Store |
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3 * Copyright (C) 2012-2015 Sebastien Jodogne, Medical Physics |
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4 * Department, University Hospital of Liege, Belgium |
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5 * |
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6 * This program is free software: you can redistribute it and/or |
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7 * modify it under the terms of the GNU General Public License as |
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8 * published by the Free Software Foundation, either version 3 of the |
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9 * License, or (at your option) any later version. |
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10 * |
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11 * In addition, as a special exception, the copyright holders of this |
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12 * program give permission to link the code of its release with the |
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13 * OpenSSL project's "OpenSSL" library (or with modified versions of it |
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14 * that use the same license as the "OpenSSL" library), and distribute |
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15 * the linked executables. You must obey the GNU General Public License |
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16 * in all respects for all of the code used other than "OpenSSL". If you |
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17 * modify file(s) with this exception, you may extend this exception to |
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18 * your version of the file(s), but you are not obligated to do so. If |
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19 * you do not wish to do so, delete this exception statement from your |
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20 * version. If you delete this exception statement from all source files |
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21 * in the program, then also delete it here. |
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22 * |
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23 * This program is distributed in the hope that it will be useful, but |
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24 * WITHOUT ANY WARRANTY; without even the implied warranty of |
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25 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU |
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26 * General Public License for more details. |
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27 * |
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28 * You should have received a copy of the GNU General Public License |
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29 * along with this program. If not, see <http://www.gnu.org/licenses/>. |
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30 **/ |
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31 |
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32 |
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33 |
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34 |
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35 |
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36 /*========================================================================= |
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37 |
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38 This file is based on portions of the following project: |
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39 |
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40 Program: DCMTK 3.6.0 |
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41 Module: http://dicom.offis.de/dcmtk.php.en |
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42 |
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43 Copyright (C) 1994-2011, OFFIS e.V. |
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44 All rights reserved. |
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45 |
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46 This software and supporting documentation were developed by |
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47 |
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48 OFFIS e.V. |
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49 R&D Division Health |
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50 Escherweg 2 |
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51 26121 Oldenburg, Germany |
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52 |
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53 Redistribution and use in source and binary forms, with or without |
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54 modification, are permitted provided that the following conditions |
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55 are met: |
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56 |
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57 - Redistributions of source code must retain the above copyright |
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58 notice, this list of conditions and the following disclaimer. |
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59 |
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60 - Redistributions in binary form must reproduce the above copyright |
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61 notice, this list of conditions and the following disclaimer in the |
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62 documentation and/or other materials provided with the distribution. |
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63 |
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64 - Neither the name of OFFIS nor the names of its contributors may be |
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65 used to endorse or promote products derived from this software |
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66 without specific prior written permission. |
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67 |
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68 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS |
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69 "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT |
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70 LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR |
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71 A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT |
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72 HOLDER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, |
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73 SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT |
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74 LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, |
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75 DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY |
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76 THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT |
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77 (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE |
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78 OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. |
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79 |
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80 =========================================================================*/ |
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81 |
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82 |
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83 |
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84 /*** |
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85 |
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86 Validation: |
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87 |
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88 # sudo apt-get install dicom3tools |
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89 # dciodvfy DICOMDIR 2>&1 | less |
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90 # dcentvfy DICOMDIR 2>&1 | less |
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91 |
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92 http://www.dclunie.com/dicom3tools/dciodvfy.html |
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93 |
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94 DICOMDIR viewer working with Wine under Linux: |
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95 http://www.microdicom.com/ |
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96 |
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97 ***/ |
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98 |
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99 |
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100 #include "PrecompiledHeadersServer.h" |
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101 #include "DicomDirWriter.h" |
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102 |
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103 #include "FromDcmtkBridge.h" |
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104 #include "ToDcmtkBridge.h" |
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105 |
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106 #include "../Core/OrthancException.h" |
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107 #include "../Core/Uuid.h" |
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108 |
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109 #include <dcmtk/dcmdata/dcdicdir.h> |
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110 #include <dcmtk/dcmdata/dcmetinf.h> |
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111 #include <dcmtk/dcmdata/dcdeftag.h> |
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112 #include <dcmtk/dcmdata/dcuid.h> |
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113 #include <dcmtk/dcmdata/dcddirif.h> |
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114 #include <dcmtk/dcmdata/dcvrui.h> |
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115 #include <dcmtk/dcmdata/dcsequen.h> |
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116 #include <dcmtk/dcmdata/dcostrmf.h> |
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117 #include "dcmtk/dcmdata/dcvrda.h" /* for class DcmDate */ |
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118 #include "dcmtk/dcmdata/dcvrtm.h" /* for class DcmTime */ |
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119 |
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120 #include <memory> |
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121 #include <glog/logging.h> |
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122 |
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123 namespace Orthanc |
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124 { |
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125 class DicomDirWriter::PImpl |
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126 { |
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127 private: |
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128 std::string fileSetId_; |
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129 Toolbox::TemporaryFile file_; |
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130 std::auto_ptr<DcmDicomDir> dir_; |
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131 |
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132 typedef std::pair<ResourceType, std::string> IndexKey; |
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133 typedef std::map<IndexKey, DcmDirectoryRecord* > Index; |
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134 Index index_; |
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135 |
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136 |
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137 /******************************************************************************* |
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138 * Functions adapted from "dcmdata/libsrc/dcddirif.cc" from DCMTK 3.6.0 |
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139 *******************************************************************************/ |
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140 |
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141 // print an error message to the console (stderr) that something went wrong with an attribute |
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142 static void printAttributeErrorMessage(const DcmTagKey &key, |
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143 const OFCondition &error, |
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144 const char *operation) |
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145 { |
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146 if (error.bad()) |
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147 { |
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148 OFString str; |
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149 if (operation != NULL) |
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150 { |
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151 str = "cannot "; |
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152 str += operation; |
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153 str += " "; |
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154 } |
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155 LOG(ERROR) << error.text() << ": " << str << DcmTag(key).getTagName() << " " << key; |
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156 } |
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157 } |
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158 |
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159 // copy element from dataset to directory record |
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160 static void copyElement(DcmItem& dataset, |
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161 const DcmTagKey &key, |
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162 DcmDirectoryRecord& record, |
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163 const OFBool optional, |
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164 const OFBool copyEmpty) |
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165 { |
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166 /* check whether tag exists in source dataset (if optional) */ |
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167 if (!optional || (copyEmpty && dataset.tagExists(key)) || dataset.tagExistsWithValue(key)) |
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168 { |
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169 DcmElement *delem = NULL; |
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170 /* get copy of element from source dataset */ |
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171 OFCondition status = dataset.findAndGetElement(key, delem, OFFalse /*searchIntoSub*/, OFTrue /*createCopy*/); |
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172 if (status.good()) |
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173 { |
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174 /* ... and insert it into the destination dataset (record) */ |
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175 status = record.insert(delem, OFTrue /*replaceOld*/); |
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176 if (status.good()) |
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177 { |
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178 DcmTag tag(key); |
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179 /* check for correct VR in the dataset */ |
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180 if (delem->getVR() != tag.getEVR()) |
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181 { |
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182 /* create warning message */ |
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183 LOG(WARNING) << "DICOMDIR: possibly wrong VR: " |
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184 << tag.getTagName() << " " << key << " with " |
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185 << DcmVR(delem->getVR()).getVRName() << " found, expected " |
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186 << tag.getVRName() << " instead"; |
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187 } |
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188 } else |
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189 delete delem; |
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190 } else if (status == EC_TagNotFound) |
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191 status = record.insertEmptyElement(key); |
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192 printAttributeErrorMessage(key, status, "insert"); |
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193 } |
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194 } |
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195 |
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196 // copy optional string value from dataset to directory record |
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197 static void copyStringWithDefault(DcmItem& dataset, |
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198 const DcmTagKey &key, |
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199 DcmDirectoryRecord& record, |
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200 const char *defaultValue, |
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201 const OFBool printWarning) |
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202 { |
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203 OFCondition status; |
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204 if (dataset.tagExistsWithValue(key)) |
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205 { |
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206 OFString stringValue; |
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207 /* retrieve string value from source dataset and put it into the destination dataset */ |
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208 status = dataset.findAndGetOFStringArray(key, stringValue); |
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209 if (status.good()) |
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210 status = record.putAndInsertString(key, stringValue.c_str()); |
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211 } else { |
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212 if (printWarning && (defaultValue != NULL)) |
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213 { |
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214 /* create warning message */ |
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215 LOG(WARNING) << "DICOMDIR: " << DcmTag(key).getTagName() << " " |
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216 << key << " missing, using alternative: " << defaultValue; |
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217 } |
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218 /* put default value */ |
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219 status = record.putAndInsertString(key, defaultValue); |
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220 } |
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221 } |
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222 |
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223 // create alternative study date if absent in dataset |
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224 static OFString &alternativeStudyDate(DcmItem& dataset, |
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225 OFString &result) |
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226 { |
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227 /* use another date if present */ |
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228 if (dataset.findAndGetOFStringArray(DCM_SeriesDate, result).bad() || result.empty()) |
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229 { |
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230 if (dataset.findAndGetOFStringArray(DCM_AcquisitionDate, result).bad() || result.empty()) |
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231 { |
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232 if (dataset.findAndGetOFStringArray(DCM_ContentDate, result).bad() || result.empty()) |
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233 { |
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234 /* use current date, "19000101" in case of error */ |
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235 DcmDate::getCurrentDate(result); |
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236 } |
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237 } |
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238 } |
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239 return result; |
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240 } |
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241 |
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242 |
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243 // create alternative study time if absent in dataset |
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244 static OFString &alternativeStudyTime(DcmItem& dataset, |
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245 OFString &result) |
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246 { |
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247 /* use another time if present */ |
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248 if (dataset.findAndGetOFStringArray(DCM_SeriesTime, result).bad() || result.empty()) |
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249 { |
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250 if (dataset.findAndGetOFStringArray(DCM_AcquisitionTime, result).bad() || result.empty()) |
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251 { |
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252 if (dataset.findAndGetOFStringArray(DCM_ContentTime, result).bad() || result.empty()) |
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253 { |
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254 /* use current time, "0000" in case of error */ |
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255 DcmTime::getCurrentTime(result); |
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256 } |
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257 } |
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258 } |
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259 return result; |
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260 } |
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261 |
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262 |
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263 static void copyElementType1(DcmItem& dataset, |
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264 const DcmTagKey &key, |
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265 DcmDirectoryRecord& record) |
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266 { |
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267 copyElement(dataset, key, record, OFFalse /*optional*/, OFFalse /*copyEmpty*/); |
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268 } |
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269 |
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270 static void copyElementType1C(DcmItem& dataset, |
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271 const DcmTagKey &key, |
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272 DcmDirectoryRecord& record) |
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273 { |
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274 copyElement(dataset, key, record, OFTrue /*optional*/, OFFalse /*copyEmpty*/); |
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275 } |
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276 |
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277 static void copyElementType2(DcmItem& dataset, |
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278 const DcmTagKey &key, |
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279 DcmDirectoryRecord& record) |
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280 { |
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281 copyElement(dataset, key, record, OFFalse /*optional*/, OFTrue /*copyEmpty*/); |
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282 } |
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283 |
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284 /******************************************************************************* |
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285 * End of functions adapted from "dcmdata/libsrc/dcddirif.cc" from DCMTK 3.6.0 |
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286 *******************************************************************************/ |
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287 |
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288 |
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289 DcmDicomDir& GetDicomDir() |
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290 { |
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291 if (dir_.get() == NULL) |
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292 { |
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293 dir_.reset(new DcmDicomDir(file_.GetPath().c_str(), |
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294 fileSetId_.c_str())); |
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295 } |
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296 |
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297 return *dir_; |
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298 } |
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299 |
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300 |
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301 DcmDirectoryRecord& GetRoot() |
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302 { |
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303 return GetDicomDir().getRootRecord(); |
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304 } |
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305 |
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306 |
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307 public: |
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308 PImpl() : fileSetId_("ORTHANC_MEDIA") |
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309 { |
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310 } |
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311 |
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312 void FillPatient(DcmDirectoryRecord& record, |
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313 DcmItem& dicom) |
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314 { |
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315 // cf. "DicomDirInterface::buildPatientRecord()" |
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316 |
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317 copyElementType1C(dicom, DCM_PatientID, record); |
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318 copyElementType2(dicom, DCM_PatientName, record); |
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319 } |
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320 |
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321 void FillStudy(DcmDirectoryRecord& record, |
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322 DcmItem& dicom) |
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323 { |
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324 // cf. "DicomDirInterface::buildStudyRecord()" |
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325 |
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326 OFString tmpString; |
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327 /* copy attribute values from dataset to study record */ |
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328 copyStringWithDefault(dicom, DCM_StudyDate, record, |
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329 alternativeStudyDate(dicom, tmpString).c_str(), OFTrue /*printWarning*/); |
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330 copyStringWithDefault(dicom, DCM_StudyTime, record, |
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331 alternativeStudyTime(dicom, tmpString).c_str(), OFTrue /*printWarning*/); |
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332 copyElementType2(dicom, DCM_StudyDescription, record); |
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333 copyElementType1(dicom, DCM_StudyInstanceUID, record); |
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334 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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335 copyElementType1C(dicom, DCM_StudyID, record); |
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336 copyElementType2(dicom, DCM_AccessionNumber, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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337 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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338 |
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Creation of ZIP archives for media storage, with DICOMDIR
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339 void FillSeries(DcmDirectoryRecord& record, |
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Creation of ZIP archives for media storage, with DICOMDIR
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340 DcmItem& dicom) |
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Creation of ZIP archives for media storage, with DICOMDIR
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341 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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342 // cf. "DicomDirInterface::buildSeriesRecord()" |
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Creation of ZIP archives for media storage, with DICOMDIR
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343 |
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Creation of ZIP archives for media storage, with DICOMDIR
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344 /* copy attribute values from dataset to series record */ |
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345 copyElementType1(dicom, DCM_Modality, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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346 copyElementType1(dicom, DCM_SeriesInstanceUID, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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347 /* use type 1C instead of 1 in order to avoid unwanted overwriting */ |
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Creation of ZIP archives for media storage, with DICOMDIR
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348 copyElementType1C(dicom, DCM_SeriesNumber, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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349 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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350 |
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Creation of ZIP archives for media storage, with DICOMDIR
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351 void FillInstance(DcmDirectoryRecord& record, |
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Creation of ZIP archives for media storage, with DICOMDIR
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352 DcmItem& dicom, |
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Creation of ZIP archives for media storage, with DICOMDIR
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353 DcmMetaInfo& metaInfo, |
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Creation of ZIP archives for media storage, with DICOMDIR
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354 const char* path) |
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Creation of ZIP archives for media storage, with DICOMDIR
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355 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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356 // cf. "DicomDirInterface::buildImageRecord()" |
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Creation of ZIP archives for media storage, with DICOMDIR
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357 |
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Creation of ZIP archives for media storage, with DICOMDIR
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358 /* copy attribute values from dataset to image record */ |
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Creation of ZIP archives for media storage, with DICOMDIR
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359 copyElementType1(dicom, DCM_InstanceNumber, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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360 //copyElementType1C(dicom, DCM_ImageType, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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361 copyElementType1C(dicom, DCM_ReferencedImageSequence, record); |
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Creation of ZIP archives for media storage, with DICOMDIR
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362 |
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363 OFString tmp; |
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364 |
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365 DcmElement* item = record.remove(DCM_ReferencedImageSequence); |
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Creation of ZIP archives for media storage, with DICOMDIR
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366 if (item != NULL) |
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Creation of ZIP archives for media storage, with DICOMDIR
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367 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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368 delete item; |
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Creation of ZIP archives for media storage, with DICOMDIR
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369 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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370 |
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Creation of ZIP archives for media storage, with DICOMDIR
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371 if (record.putAndInsertString(DCM_ReferencedFileID, path).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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372 dicom.findAndGetOFStringArray(DCM_SOPClassUID, tmp).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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373 record.putAndInsertString(DCM_ReferencedSOPClassUIDInFile, tmp.c_str()).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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374 dicom.findAndGetOFStringArray(DCM_SOPInstanceUID, tmp).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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375 record.putAndInsertString(DCM_ReferencedSOPInstanceUIDInFile, tmp.c_str()).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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376 metaInfo.findAndGetOFStringArray(DCM_TransferSyntaxUID, tmp).bad() || |
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Creation of ZIP archives for media storage, with DICOMDIR
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377 record.putAndInsertString(DCM_ReferencedTransferSyntaxUIDInFile, tmp.c_str()).bad()) |
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Creation of ZIP archives for media storage, with DICOMDIR
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378 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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379 throw OrthancException(ErrorCode_BadFileFormat); |
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Creation of ZIP archives for media storage, with DICOMDIR
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380 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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381 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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382 |
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Creation of ZIP archives for media storage, with DICOMDIR
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383 |
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Creation of ZIP archives for media storage, with DICOMDIR
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384 |
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385 bool CreateResource(DcmDirectoryRecord*& target, |
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Creation of ZIP archives for media storage, with DICOMDIR
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386 ResourceType level, |
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Creation of ZIP archives for media storage, with DICOMDIR
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387 DcmFileFormat& dicom, |
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Creation of ZIP archives for media storage, with DICOMDIR
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388 const char* filename, |
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Creation of ZIP archives for media storage, with DICOMDIR
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389 const char* path) |
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Creation of ZIP archives for media storage, with DICOMDIR
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390 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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391 DcmDataset& dataset = *dicom.getDataset(); |
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Creation of ZIP archives for media storage, with DICOMDIR
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392 |
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Creation of ZIP archives for media storage, with DICOMDIR
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393 OFCondition result; |
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Creation of ZIP archives for media storage, with DICOMDIR
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394 OFString id; |
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Creation of ZIP archives for media storage, with DICOMDIR
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395 E_DirRecType type; |
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Creation of ZIP archives for media storage, with DICOMDIR
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396 |
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Creation of ZIP archives for media storage, with DICOMDIR
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397 switch (level) |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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398 { |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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399 case ResourceType_Patient: |
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Creation of ZIP archives for media storage, with DICOMDIR
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400 result = dataset.findAndGetOFString(DCM_PatientID, id); |
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Creation of ZIP archives for media storage, with DICOMDIR
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401 type = ERT_Patient; |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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402 break; |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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403 |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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404 case ResourceType_Study: |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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405 result = dataset.findAndGetOFString(DCM_StudyInstanceUID, id); |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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406 type = ERT_Study; |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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407 break; |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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408 |
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Creation of ZIP archives for media storage, with DICOMDIR
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409 case ResourceType_Series: |
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Creation of ZIP archives for media storage, with DICOMDIR
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410 result = dataset.findAndGetOFString(DCM_SeriesInstanceUID, id); |
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Creation of ZIP archives for media storage, with DICOMDIR
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411 type = ERT_Series; |
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Creation of ZIP archives for media storage, with DICOMDIR
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412 break; |
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Creation of ZIP archives for media storage, with DICOMDIR
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413 |
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Creation of ZIP archives for media storage, with DICOMDIR
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414 case ResourceType_Instance: |
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Creation of ZIP archives for media storage, with DICOMDIR
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415 result = dataset.findAndGetOFString(DCM_SOPInstanceUID, id); |
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Creation of ZIP archives for media storage, with DICOMDIR
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416 type = ERT_Image; |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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417 break; |
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Creation of ZIP archives for media storage, with DICOMDIR
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418 |
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Creation of ZIP archives for media storage, with DICOMDIR
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419 default: |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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420 throw OrthancException(ErrorCode_InternalError); |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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421 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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422 |
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Creation of ZIP archives for media storage, with DICOMDIR
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423 if (!result.good()) |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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424 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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425 throw OrthancException(ErrorCode_InternalError); |
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Creation of ZIP archives for media storage, with DICOMDIR
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parents:
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426 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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427 |
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Creation of ZIP archives for media storage, with DICOMDIR
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428 IndexKey key = std::make_pair(level, std::string(id.c_str())); |
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Creation of ZIP archives for media storage, with DICOMDIR
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429 Index::iterator it = index_.find(key); |
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Creation of ZIP archives for media storage, with DICOMDIR
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430 |
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Creation of ZIP archives for media storage, with DICOMDIR
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431 if (it != index_.end()) |
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Creation of ZIP archives for media storage, with DICOMDIR
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432 { |
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Creation of ZIP archives for media storage, with DICOMDIR
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433 target = it->second; |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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434 return false; // Already existing |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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435 } |
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Creation of ZIP archives for media storage, with DICOMDIR
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436 |
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Creation of ZIP archives for media storage, with DICOMDIR
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437 std::auto_ptr<DcmDirectoryRecord> record(new DcmDirectoryRecord(type, NULL, filename)); |
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Creation of ZIP archives for media storage, with DICOMDIR
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438 |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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439 switch (level) |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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440 { |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
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441 case ResourceType_Patient: |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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442 FillPatient(*record, dataset); |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
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443 break; |
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Creation of ZIP archives for media storage, with DICOMDIR
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444 |
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Creation of ZIP archives for media storage, with DICOMDIR
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445 case ResourceType_Study: |
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Creation of ZIP archives for media storage, with DICOMDIR
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446 FillStudy(*record, dataset); |
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Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
447 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
448 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
449 case ResourceType_Series: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
450 FillSeries(*record, dataset); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
451 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
452 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
453 case ResourceType_Instance: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
454 FillInstance(*record, dataset, *dicom.getMetaInfo(), path); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
455 break; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
456 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
457 default: |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
458 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
459 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
460 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
461 if (record->isAffectedBySpecificCharacterSet()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
462 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
463 copyElementType1C(dataset, DCM_SpecificCharacterSet, *record); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
464 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
465 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
466 target = record.get(); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
467 GetRoot().insertSub(record.release()); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
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|
468 index_[key] = target; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
469 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
470 return true; // Newly created |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
471 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
472 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
473 void Read(std::string& s) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
474 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
475 if (!GetDicomDir().write(DICOMDIR_DEFAULT_TRANSFERSYNTAX, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
476 EET_UndefinedLength /*encodingType*/, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
477 EGL_withoutGL /*groupLength*/).good()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
478 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
479 throw OrthancException(ErrorCode_InternalError); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
480 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
481 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
482 file_.Read(s); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
483 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
484 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
485 void SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
486 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
487 dir_.reset(NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
488 fileSetId_ = id; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
489 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
490 }; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
491 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
492 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
493 DicomDirWriter::DicomDirWriter() : pimpl_(new PImpl) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
494 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
495 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
496 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
497 DicomDirWriter::~DicomDirWriter() |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
498 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
499 if (pimpl_) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
500 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
501 delete pimpl_; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
502 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
503 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
504 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
505 void DicomDirWriter::SetFileSetId(const std::string& id) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
506 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
507 pimpl_->SetFileSetId(id); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
508 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
509 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
510 void DicomDirWriter::Add(const std::string& directory, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
511 const std::string& filename, |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
512 ParsedDicomFile& dicom) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
513 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
514 std::string path; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
515 if (directory.empty()) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
516 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
517 path = filename; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
518 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
519 else |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
520 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
521 if (directory[directory.length() - 1] == '/' || |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
522 directory[directory.length() - 1] == '\\') |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
523 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
524 throw OrthancException(ErrorCode_ParameterOutOfRange); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
525 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
526 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
527 path = directory + '\\' + filename; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
528 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
529 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
530 DcmFileFormat& fileFormat = *reinterpret_cast<DcmFileFormat*>(dicom.GetDcmtkObject()); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
531 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
532 DcmDirectoryRecord* instance; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
533 bool isNewInstance = pimpl_->CreateResource(instance, ResourceType_Instance, fileFormat, filename.c_str(), path.c_str()); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
534 if (isNewInstance) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
535 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
536 DcmDirectoryRecord* series; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
537 bool isNewSeries = pimpl_->CreateResource(series, ResourceType_Series, fileFormat, filename.c_str(), NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
538 series->insertSub(instance); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
539 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
540 if (isNewSeries) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
541 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
542 DcmDirectoryRecord* study; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
543 bool isNewStudy = pimpl_->CreateResource(study, ResourceType_Study, fileFormat, filename.c_str(), NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
544 study->insertSub(series); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
545 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
546 if (isNewStudy) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
547 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
548 DcmDirectoryRecord* patient; |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
549 pimpl_->CreateResource(patient, ResourceType_Patient, fileFormat, filename.c_str(), NULL); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
550 patient->insertSub(study); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
551 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
552 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
553 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
554 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
555 |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
556 void DicomDirWriter::Encode(std::string& target) |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
557 { |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
558 pimpl_->Read(target); |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
559 } |
82567bac5e25
Creation of ZIP archives for media storage, with DICOMDIR
Sebastien Jodogne <s.jodogne@gmail.com>
parents:
diff
changeset
|
560 } |